RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15534
(157 letters)
>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma
mansoni) [TaxId: 6183]}
Length = 208
Score = 77.6 bits (191), Expect = 5e-19
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 83 EQGQFLALDLGGTNFRVILMHLK-KGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISD 141
E G FLALDLGGTN+RV+ + L+ KG + Y IP E GSG +LF ++A ++D
Sbjct: 64 ETGNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAEKMSGSGTELFKYIAETLAD 123
Query: 142 FVHEYQVHDRVIPMG 156
F+ + D+ +G
Sbjct: 124 FLENNGMKDKKFDLG 138
>d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 205
Score = 77.2 bits (190), Expect = 6e-19
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIV----KHYHIPDELRLGSGLKLFDFLAAC 138
E G FL+LDLGGTNFRV+L+ + +G V + Y IP++ G+ LFD+++ C
Sbjct: 57 EVGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISEC 116
Query: 139 ISDFVHEYQVHDRVIPMG 156
ISDF+ ++Q+ + +P+G
Sbjct: 117 ISDFLDKHQMKHKKLPLG 134
>d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 75.7 bits (186), Expect = 3e-18
Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 83 EQGQFLALDLGGTNFRVILMHL--KKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACIS 140
E+G F+ALDLGG++FR++ + + +K + Y P+ + GSG +LFD +A C+
Sbjct: 61 EKGDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLG 120
Query: 141 DFVHEYQVHDRVIPMG 156
DF+ + ++ D+ +P+G
Sbjct: 121 DFMEKRKIKDKKLPVG 136
>d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 205
Score = 74.1 bits (182), Expect = 1e-17
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 83 EQGQFLALDLGGTNFRVILMHLK--KGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACIS 140
E G FLALDLGGTNFRV+L+ ++ K + K Y IP E+ G+G +LFD + +CIS
Sbjct: 59 ENGDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCIS 118
Query: 141 DFVHEYQVHDRVIPMG 156
DF+ + +P+G
Sbjct: 119 DFLDYMGIKGPRMPLG 134
>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 207
Score = 69.5 bits (170), Expect = 6e-16
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLK-LFDFLAACISD 141
E G FLA+DLGGTN RV+L+ L D Y +PD +R L++F+A +
Sbjct: 61 ESGDFLAIDLGGTNLRVVLVKLGGDRTFDTTQSKYRLPDAMRTTQNPDELWEFIADSLKA 120
Query: 142 FV--HEYQVHDRVIPMG 156
F+ Q IP+G
Sbjct: 121 FIDEQFPQGISEPIPLG 137
>d1woqa1 c.55.1.10 (A:11-139) Inorganic
polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter
sp. KM [TaxId: 184230]}
Length = 129
Score = 35.6 bits (81), Expect = 6e-04
Identities = 11/69 (15%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 88 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQ 147
+ +D+GGT + ++ LKKG +++ + + + + +A +++ +
Sbjct: 5 IGIDIGGTGIKGGIVDLKKG----KLLGERFRVPTPQPATPESVAEAVALVVAELSARPE 60
Query: 148 VHDRVIPMG 156
P+G
Sbjct: 61 APAAGSPVG 69
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 114
Score = 32.3 bits (73), Expect = 0.007
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 88 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDEL--RLGSGLKLFDFLAACISDFVHE 145
+D+GGT + + ++ + ++L L L D+ +S
Sbjct: 4 ATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAV 63
Query: 146 YQVHDRVI 153
Q +
Sbjct: 64 NQETGVID 71
>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli
[TaxId: 562]}
Length = 319
Score = 31.7 bits (70), Expect = 0.027
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 88 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQ 147
L D+GGTN R+ L + G ++ K Y D + L A I ++ E++
Sbjct: 4 LVGDVGGTNARLALCDIASGEISQA--KTYSGLD----------YPSLEAVIRVYLEEHK 51
Query: 148 VHDRVIPMG 156
V + +
Sbjct: 52 VEVKDGCIA 60
>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007
{Vibrio cholerae [TaxId: 666]}
Length = 128
Score = 31.0 bits (69), Expect = 0.029
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 86 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAA 137
QFL++ LG + L L ++ D + + I + L L +
Sbjct: 5 QFLSMRLGRGYLTIALHELGGEVLIDTKIDIHEIDQDDVLARLLFEIEEFFQ 56
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId:
562]}
Length = 129
Score = 30.7 bits (68), Expect = 0.032
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 142
E +L+L + + L L LV +E + D L D + + I F
Sbjct: 2 EAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL-------PLLDRIISHIDQF 54
Query: 143 VHEYQVHD 150
+Q
Sbjct: 55 FIRHQKKL 62
>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus
subtilis [TaxId: 1423]}
Length = 118
Score = 30.5 bits (68), Expect = 0.036
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDEL 123
++ GGT F + G + D I +PDE
Sbjct: 2 LGGIEAGGTKFVCAVGRE-DGTIIDRIEFPTKMPDET 37
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX
{Salmonella typhimurium [TaxId: 90371]}
Length = 117
Score = 30.2 bits (67), Expect = 0.041
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 146
+ D+GGT + + + L ++ V H S D + + + +
Sbjct: 2 YYGFDIGGTKIALGVFDSTRRLQWEKRVPTPHT-------SYSAFLDAVCELVEEADQRF 54
Query: 147 QVHDRVIPMG 156
V V
Sbjct: 55 GVKGSVGIGI 64
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga
maritima [TaxId: 2336]}
Length = 128
Score = 27.9 bits (61), Expect = 0.37
Identities = 5/67 (7%), Positives = 16/67 (23%), Gaps = 6/67 (8%)
Query: 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 146
L +++ L+ ++ E D + + + I
Sbjct: 6 VLGIEVTRDEIAACLIDASMNILAHEAHPLPSQSD------REETLNVMYRIIDRAKDMM 59
Query: 147 QVHDRVI 153
+ +
Sbjct: 60 EKLGSKL 66
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli
[TaxId: 562]}
Length = 110
Score = 27.4 bits (60), Expect = 0.40
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 88 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDEL 123
L D+GGTN R+ L + G ++ L
Sbjct: 5 LVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSL 40
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 57
Score = 25.1 bits (55), Expect = 0.99
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 83 EQGQFL-ALDLGGTNFRVILMHLKKGLVTDEIVKHYHI 119
E F AL+ G +F I I+++Y++
Sbjct: 8 EACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 45
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK
{Escherichia coli [TaxId: 562]}
Length = 119
Score = 25.9 bits (56), Expect = 1.4
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 10/69 (14%)
Query: 88 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQ 147
LA+D+GGT L+ +I +P + L +S V Q
Sbjct: 4 LAIDIGGTKLAAALIGA-----DGQIRDRRELPTPASQT-----PEALRDALSALVSPLQ 53
Query: 148 VHDRVIPMG 156
H + + +
Sbjct: 54 AHAQRVAIA 62
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 26.3 bits (57), Expect = 1.5
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDE 122
L +D+G T + I++ K +V +V
Sbjct: 4 TLGIDVGSTASKCIILKDGKEIVAKSLVAVGTGTSG 39
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase
CV2896 {Chromobacterium violaceum [TaxId: 536]}
Length = 114
Score = 25.0 bits (54), Expect = 2.8
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 87 FLALDLGGTNFRVILM 102
+ +D GGT R+ L
Sbjct: 6 LIGVDGGGTGTRIRLH 21
>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 24.9 bits (54), Expect = 4.1
Identities = 8/75 (10%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 142
+G ++ + L L +Y + + + G K F+ + ++D
Sbjct: 54 VEGAYILRESQRQPGCYTLA-----LRFGNQTLNYRLFHDGKHFVGEKRFESIHDLVTDG 108
Query: 143 VHEYQVHDRVIPMGE 157
+ + +
Sbjct: 109 LITLYIETKAAEYIS 123
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 252
Score = 25.1 bits (54), Expect = 4.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLV 109
E+ +ALD G T+ R ++M ++
Sbjct: 1 EKKYIVALDQGTTSSRAVVMDHDANII 27
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 252
Score = 24.7 bits (53), Expect = 5.7
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI 119
+A+D G T+ R I+ + +
Sbjct: 3 VMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQY 35
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 23.6 bits (51), Expect = 9.6
Identities = 3/12 (25%), Positives = 4/12 (33%)
Query: 109 VTDEIVKHYHIP 120
D + Y I
Sbjct: 88 ANDSGPRRYTIA 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.395
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 555,796
Number of extensions: 23463
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 24
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.2 bits)