Query psy15536
Match_columns 200
No_of_seqs 217 out of 1020
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 23:50:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00349 Hexokinase_1: Hexokin 100.0 2.3E-54 5E-59 359.5 13.4 153 44-200 45-199 (206)
2 PLN02405 hexokinase 100.0 4.2E-52 9E-57 382.9 14.8 153 43-200 76-235 (497)
3 PLN02914 hexokinase 100.0 9.6E-52 2.1E-56 379.7 14.9 153 43-200 76-235 (490)
4 PLN02362 hexokinase 100.0 1.6E-51 3.5E-56 379.8 14.5 153 43-200 76-235 (509)
5 PLN02596 hexokinase-like 100.0 1.5E-50 3.3E-55 371.8 14.6 152 43-200 77-235 (490)
6 PTZ00107 hexokinase; Provision 100.0 1.9E-50 4.2E-55 369.8 14.7 154 42-200 54-224 (464)
7 KOG1369|consensus 100.0 5.9E-47 1.3E-51 344.5 13.5 152 45-200 69-222 (474)
8 COG5026 Hexokinase [Carbohydra 100.0 3.8E-43 8.2E-48 313.9 12.4 151 45-200 58-211 (466)
9 PLN02405 hexokinase 99.7 7.1E-18 1.5E-22 156.2 3.6 68 1-69 222-289 (497)
10 PLN02914 hexokinase 99.7 9.5E-18 2.1E-22 155.0 3.8 68 1-69 222-289 (490)
11 PLN02362 hexokinase 99.7 1.4E-17 3.1E-22 154.5 3.7 68 1-69 222-289 (509)
12 PLN02596 hexokinase-like 99.7 1.8E-17 3.8E-22 153.2 3.8 67 2-69 223-289 (490)
13 KOG1369|consensus 99.7 2.8E-17 6E-22 150.5 2.8 75 2-78 210-286 (474)
14 PTZ00107 hexokinase; Provision 99.5 3.5E-15 7.6E-20 137.5 3.2 60 1-68 211-274 (464)
15 COG5026 Hexokinase [Carbohydra 99.5 1.9E-14 4.1E-19 129.9 4.7 79 2-80 199-279 (466)
16 PF03727 Hexokinase_2: Hexokin 98.9 4.4E-10 9.4E-15 95.7 1.5 42 23-68 1-42 (243)
17 PRK09698 D-allose kinase; Prov 97.9 0.00012 2.7E-09 63.3 11.5 112 65-198 3-116 (302)
18 PF00480 ROK: ROK family; Int 97.8 0.00022 4.7E-09 56.8 9.6 103 70-198 1-103 (179)
19 COG1940 NagC Transcriptional r 97.7 0.0006 1.3E-08 59.4 11.4 117 62-198 2-118 (314)
20 smart00732 YqgFc Likely ribonu 97.6 0.0011 2.4E-08 47.7 10.2 95 67-200 2-97 (99)
21 PRK13311 N-acetyl-D-glucosamin 97.5 0.0022 4.7E-08 54.6 11.9 104 68-197 2-107 (256)
22 PRK12408 glucokinase; Provisio 97.2 0.00097 2.1E-08 59.3 7.2 29 60-88 9-38 (336)
23 PRK13310 N-acetyl-D-glucosamin 97.2 0.0051 1.1E-07 53.3 11.3 106 68-197 2-107 (303)
24 PRK05082 N-acetylmannosamine k 97.2 0.0061 1.3E-07 52.5 11.5 106 68-198 3-108 (291)
25 TIGR00744 ROK_glcA_fam ROK fam 97.2 0.0047 1E-07 53.7 10.8 107 69-198 1-109 (318)
26 PRK09557 fructokinase; Reviewe 97.2 0.0057 1.2E-07 53.0 11.2 105 68-198 2-108 (301)
27 PRK14101 bifunctional glucokin 96.8 0.0036 7.9E-08 60.2 7.4 67 66-146 18-84 (638)
28 PRK00292 glk glucokinase; Prov 96.6 0.0073 1.6E-07 52.8 7.3 22 67-88 3-24 (316)
29 PF00370 FGGY_N: FGGY family o 96.4 0.027 6E-07 47.2 9.5 59 68-127 2-63 (245)
30 TIGR00749 glk glucokinase, pro 96.4 0.0083 1.8E-07 52.6 6.6 65 69-145 1-67 (316)
31 PTZ00288 glucokinase 1; Provis 96.1 0.067 1.5E-06 49.1 10.7 115 65-198 25-141 (405)
32 TIGR01314 gntK_FGGY gluconate 95.3 0.074 1.6E-06 49.6 8.1 60 68-128 2-64 (505)
33 PF02685 Glucokinase: Glucokin 95.2 0.032 7E-07 49.5 5.1 101 69-198 1-103 (316)
34 PRK10939 autoinducer-2 (AI-2) 94.3 0.22 4.8E-06 46.7 8.3 73 67-141 4-81 (520)
35 TIGR01311 glycerol_kin glycero 94.1 0.22 4.8E-06 46.3 7.9 61 68-129 3-66 (493)
36 PRK00047 glpK glycerol kinase; 93.7 0.29 6.2E-06 45.6 8.0 61 67-128 6-69 (498)
37 TIGR01234 L-ribulokinase L-rib 93.7 0.31 6.6E-06 45.9 8.1 73 68-142 3-90 (536)
38 TIGR01315 5C_CHO_kinase FGGY-f 93.7 0.31 6.6E-06 46.0 8.1 108 68-177 2-120 (541)
39 PLN02295 glycerol kinase 93.7 0.34 7.4E-06 45.3 8.4 61 68-129 2-65 (512)
40 PRK15027 xylulokinase; Provisi 93.5 0.38 8.3E-06 44.6 8.3 60 67-127 1-63 (484)
41 PTZ00294 glycerol kinase-like 93.2 0.48 1E-05 44.2 8.6 61 67-128 3-66 (504)
42 COG1070 XylB Sugar (pentulose 92.9 0.48 1E-05 44.4 8.1 61 67-127 5-68 (502)
43 PRK10331 L-fuculokinase; Provi 92.8 0.53 1.1E-05 43.5 8.1 60 67-127 3-67 (470)
44 PRK13318 pantothenate kinase; 92.5 0.51 1.1E-05 40.2 7.1 17 68-84 2-18 (258)
45 TIGR01312 XylB D-xylulose kina 92.4 0.5 1.1E-05 43.4 7.5 71 69-141 1-74 (481)
46 PRK13321 pantothenate kinase; 92.0 0.45 9.8E-06 40.6 6.2 48 68-122 2-49 (256)
47 TIGR01174 ftsA cell division p 91.6 7.1 0.00015 34.8 13.7 57 68-126 2-59 (371)
48 TIGR02628 fuculo_kin_coli L-fu 91.6 0.81 1.8E-05 42.3 7.8 58 68-126 3-65 (465)
49 PRK04123 ribulokinase; Provisi 91.3 1.2 2.6E-05 42.0 8.8 61 67-128 4-74 (548)
50 TIGR01175 pilM type IV pilus a 90.9 3.8 8.3E-05 35.9 11.1 101 67-182 4-107 (348)
51 TIGR02627 rhamnulo_kin rhamnul 88.5 1.9 4.2E-05 39.6 7.6 56 69-125 1-63 (454)
52 smart00842 FtsA Cell division 87.9 4.2 9.1E-05 32.7 8.5 58 68-126 1-58 (187)
53 COG0837 Glk Glucokinase [Carbo 85.5 2.9 6.3E-05 37.1 6.6 23 66-88 6-28 (320)
54 PRK15080 ethanolamine utilizat 82.8 8.9 0.00019 32.9 8.5 61 60-125 18-78 (267)
55 PF01869 BcrAD_BadFG: BadF/Bad 78.7 12 0.00026 31.7 7.8 57 69-129 1-57 (271)
56 COG4972 PilM Tfp pilus assembl 77.4 18 0.00039 32.6 8.6 121 68-190 12-168 (354)
57 TIGR00241 CoA_E_activ CoA-subs 76.0 9.8 0.00021 32.1 6.5 19 68-87 2-20 (248)
58 PLN02669 xylulokinase 74.2 14 0.0003 35.2 7.7 57 67-124 9-81 (556)
59 PF11104 PilM_2: Type IV pilus 72.0 18 0.00039 31.9 7.4 60 70-130 1-61 (340)
60 COG1069 AraB Ribulose kinase [ 70.2 16 0.00035 34.9 6.9 97 67-164 4-104 (544)
61 KOG2517|consensus 63.4 57 0.0012 31.1 9.1 94 66-164 6-102 (516)
62 TIGR02707 butyr_kinase butyrat 62.1 23 0.0005 31.9 6.1 56 68-129 2-61 (351)
63 PRK09472 ftsA cell division pr 61.9 38 0.00083 30.9 7.7 59 67-126 9-67 (420)
64 PRK13410 molecular chaperone D 57.0 12 0.00025 36.7 3.5 19 66-84 2-20 (668)
65 PRK13411 molecular chaperone D 55.5 37 0.00079 33.1 6.7 29 65-94 185-213 (653)
66 PRK00290 dnaK molecular chaper 54.8 11 0.00024 36.3 2.9 19 66-84 2-20 (627)
67 COG0554 GlpK Glycerol kinase [ 54.3 31 0.00068 32.6 5.7 102 66-178 5-119 (499)
68 PRK05183 hscA chaperone protei 50.9 13 0.00029 35.8 2.8 20 65-84 18-37 (616)
69 PF00012 HSP70: Hsp70 protein; 50.6 37 0.00079 32.0 5.7 54 64-121 186-241 (602)
70 COG3734 DgoK 2-keto-3-deoxy-ga 50.1 16 0.00035 32.3 2.9 23 65-87 4-26 (306)
71 PF07549 Sec_GG: SecD/SecF GG 50.0 9 0.0002 22.0 1.0 14 67-80 9-23 (31)
72 TIGR02350 prok_dnaK chaperone 49.7 58 0.0013 31.1 6.9 29 65-94 182-210 (595)
73 CHL00094 dnaK heat shock prote 48.8 58 0.0013 31.4 6.8 29 65-94 186-214 (621)
74 PRK00290 dnaK molecular chaper 48.2 51 0.0011 31.7 6.4 29 65-94 184-212 (627)
75 PRK13410 molecular chaperone D 48.1 59 0.0013 31.8 6.8 29 65-94 186-214 (668)
76 TIGR00555 panK_eukar pantothen 47.7 58 0.0013 28.5 6.1 20 68-87 2-21 (279)
77 cd00529 RuvC_resolvase Hollida 47.2 1.1E+02 0.0023 24.0 7.0 22 67-88 1-22 (154)
78 PRK13320 pantothenate kinase; 46.8 58 0.0013 27.7 5.8 17 68-84 4-20 (244)
79 CHL00094 dnaK heat shock prote 45.2 22 0.00048 34.3 3.4 19 66-84 2-20 (621)
80 PTZ00186 heat shock 70 kDa pre 45.1 70 0.0015 31.3 6.8 29 65-94 211-239 (657)
81 PLN03184 chloroplast Hsp70; Pr 44.9 64 0.0014 31.6 6.5 29 65-94 223-251 (673)
82 PRK13324 pantothenate kinase; 44.7 79 0.0017 27.2 6.4 47 68-120 2-48 (258)
83 PTZ00009 heat shock 70 kDa pro 44.6 66 0.0014 31.3 6.5 29 65-94 193-221 (653)
84 TIGR03123 one_C_unchar_1 proba 43.6 20 0.00044 32.0 2.6 20 65-84 127-146 (318)
85 PF11215 DUF3010: Protein of u 43.3 71 0.0015 25.2 5.3 58 68-129 3-62 (138)
86 COG2971 Predicted N-acetylgluc 42.4 98 0.0021 27.5 6.7 59 67-129 6-64 (301)
87 TIGR03706 exo_poly_only exopol 42.4 1.4E+02 0.0031 25.8 7.8 57 68-124 2-62 (300)
88 PRK10854 exopolyphosphatase; P 41.9 1.6E+02 0.0035 27.7 8.5 57 67-124 12-73 (513)
89 PF09907 DUF2136: Uncharacteri 41.8 30 0.00065 24.3 2.8 21 66-86 36-57 (76)
90 PTZ00009 heat shock 70 kDa pro 41.7 30 0.00066 33.6 3.7 19 66-84 4-22 (653)
91 PF14574 DUF4445: Domain of un 41.3 35 0.00075 31.6 3.9 22 69-90 4-25 (412)
92 TIGR00671 baf pantothenate kin 41.3 1E+02 0.0022 26.1 6.5 46 69-121 2-47 (243)
93 KOG1794|consensus 40.6 2.5E+02 0.0055 25.2 8.8 106 66-200 3-112 (336)
94 PLN03184 chloroplast Hsp70; Pr 40.5 34 0.00073 33.5 3.9 19 66-84 39-57 (673)
95 COG3894 Uncharacterized metal- 38.7 54 0.0012 31.4 4.7 33 69-101 167-200 (614)
96 PF01968 Hydantoinase_A: Hydan 38.5 30 0.00064 30.1 2.9 19 66-84 77-95 (290)
97 PF02075 RuvC: Crossover junct 37.6 2E+02 0.0042 22.4 7.3 56 68-123 1-57 (149)
98 PTZ00400 DnaK-type molecular c 36.7 38 0.00082 33.1 3.5 19 66-84 41-59 (663)
99 KOG1794|consensus 35.8 32 0.00069 30.7 2.6 32 5-37 103-134 (336)
100 COG1521 Pantothenate kinase ty 35.8 2.5E+02 0.0054 24.2 8.0 32 152-183 90-121 (251)
101 PTZ00186 heat shock 70 kDa pre 35.2 33 0.00071 33.6 2.8 20 65-84 26-45 (657)
102 PRK13411 molecular chaperone D 35.0 36 0.00078 33.1 3.1 19 66-84 2-20 (653)
103 PRK00039 ruvC Holliday junctio 35.0 2E+02 0.0043 23.0 6.9 57 67-123 3-60 (164)
104 PTZ00400 DnaK-type molecular c 34.3 93 0.002 30.4 5.8 27 66-93 226-252 (663)
105 COG5146 PanK Pantothenate kina 32.8 70 0.0015 28.0 4.1 48 67-123 19-66 (342)
106 PF14450 FtsA: Cell division p 30.5 51 0.0011 24.5 2.7 21 68-88 1-21 (120)
107 COG0443 DnaK Molecular chapero 30.5 1.8E+02 0.0038 28.1 6.9 23 64-86 170-192 (579)
108 PRK11031 guanosine pentaphosph 28.0 3E+02 0.0065 25.8 7.9 57 67-124 7-68 (496)
109 PHA02858 EIF2a-like PKR inhibi 27.5 33 0.00071 24.8 1.1 12 134-145 5-16 (86)
110 PRK13326 pantothenate kinase; 26.1 1.9E+02 0.0041 24.9 5.7 45 67-118 7-51 (262)
111 cd01817 RGS12_RBD Ubiquitin do 25.6 73 0.0016 22.4 2.5 20 168-188 19-38 (73)
112 PRK01433 hscA chaperone protei 25.4 80 0.0017 30.5 3.6 25 64-88 191-215 (595)
113 COG1077 MreB Actin-like ATPase 25.0 87 0.0019 28.3 3.5 54 57-118 145-198 (342)
114 PF06406 StbA: StbA protein; 24.3 75 0.0016 27.8 3.0 21 64-84 162-182 (318)
115 COG0145 HyuA N-methylhydantoin 24.1 67 0.0014 31.7 2.8 23 62-84 274-296 (674)
116 PRK05183 hscA chaperone protei 23.7 87 0.0019 30.3 3.5 24 65-88 200-223 (616)
117 TIGR01991 HscA Fe-S protein as 23.6 54 0.0012 31.5 2.1 16 69-84 2-17 (599)
118 TIGR01991 HscA Fe-S protein as 21.8 1.1E+02 0.0023 29.5 3.7 25 64-88 179-203 (599)
119 PF14587 Glyco_hydr_30_2: O-Gl 21.8 1.8E+02 0.0038 26.8 4.9 68 106-190 150-223 (384)
120 PRK11678 putative chaperone; P 21.8 1.1E+02 0.0024 28.5 3.7 24 65-88 208-231 (450)
121 PF12078 DUF3557: Domain of un 21.6 82 0.0018 24.0 2.4 14 133-146 141-154 (154)
122 PRK13317 pantothenate kinase; 21.3 87 0.0019 27.2 2.8 19 67-85 3-21 (277)
123 TIGR02350 prok_dnaK chaperone 21.3 62 0.0014 30.9 2.0 17 68-84 2-18 (595)
124 TIGR02529 EutJ ethanolamine ut 21.2 4.9E+02 0.011 21.7 8.0 18 70-87 1-18 (239)
125 PF08338 DUF1731: Domain of un 20.7 30 0.00065 22.0 -0.2 13 134-146 29-41 (48)
126 PF05378 Hydant_A_N: Hydantoin 20.4 90 0.002 25.1 2.5 19 69-87 2-20 (176)
127 TIGR02261 benz_CoA_red_D benzo 20.2 3.3E+02 0.0071 23.6 6.0 20 68-87 3-22 (262)
128 COG2859 Uncharacterized protei 20.0 2.3E+02 0.0049 24.3 4.8 75 72-146 31-108 (237)
No 1
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=2.3e-54 Score=359.49 Aligned_cols=153 Identities=47% Similarity=0.803 Sum_probs=135.0
Q ss_pred cccccccccCCcccccccCccccceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHH
Q psy15536 44 KVKHWETERHGEKNNFPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 123 (200)
Q Consensus 44 ~i~k~~~~~~~~v~~~P~g~E~G~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f 123 (200)
+++|+|+ |+..+|+|.|+|.|||||+|||||||++|+|.|++.+++.+++|+||++++.+++++||||||+||++|
T Consensus 45 ~l~MlPs----~v~~~P~G~E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f 120 (206)
T PF00349_consen 45 SLKMLPS----YVTSLPTGNEKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGSGEELFDFIADCIAEF 120 (206)
T ss_dssp SS-EEEE----SEESSTTSTTEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHH
T ss_pred eeecccc----ccccCCCCCCCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCCcccHHHHHHHHHHHH
Confidence 3889988 678899999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HhhccC--CCcceeeeEEeecccccccCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEccCceeC
Q psy15536 124 VHEYQV--HDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLNDTTGTY 200 (200)
Q Consensus 124 ~~~~~~--~~~~l~lGftFSFP~~q~~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivNDTVatL 200 (200)
+++++. .++++||||||||||+|+++++|+|++|||||.+++++|+|++++|++||+|++..+++|+||+|||||||
T Consensus 121 ~~~~~~~~~~~~l~lGfTFSFP~~q~~~~~g~li~wtKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTL 199 (206)
T PF00349_consen 121 LKEHNLESRDEKLPLGFTFSFPVEQTSLNSGTLIRWTKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTL 199 (206)
T ss_dssp HHHTTTTSTTSEEEEEEEEESSEEESSTTEEEE----TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHH
T ss_pred HHHhcccccccccceEEEEEEEEEeccCCCeEEEEeeccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHh
Confidence 999876 57899999999999999999999999999999999999999999999999999955599999999999996
No 2
>PLN02405 hexokinase
Probab=100.00 E-value=4.2e-52 Score=382.85 Aligned_cols=153 Identities=40% Similarity=0.598 Sum_probs=142.6
Q ss_pred ccccccccccCCcccccccCccccceEEEecCCceeEEEEEEEcCCc--eEEEEEEEeecCcccccccchhHHHHHHHHH
Q psy15536 43 DKVKHWETERHGEKNNFPRKIEQGQFLALDLGGTNFRVILMHLKKGL--VTDEIVKHYHIPDELRLGSGLKLFDFLAACI 120 (200)
Q Consensus 43 ~~i~k~~~~~~~~v~~~P~g~E~G~f~alDlGGTnlRv~~v~l~g~~--~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i 120 (200)
++++|+|+ |+..+|+|+|.|.|||||||||||||++|+|.|++ .+++.+++|+||+++|.+++++||||||+||
T Consensus 76 s~l~MlpS----yv~~lPtG~E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i 151 (497)
T PLN02405 76 SKLKMLIS----YVDNLPSGDEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAAL 151 (497)
T ss_pred CCcceecc----ccccCCCCCcceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHH
Confidence 46889988 78899999999999999999999999999999854 4677889999999999999999999999999
Q ss_pred HHHHhhccCC-----CcceeeeEEeecccccccCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEcc
Q psy15536 121 SDFVHEYQVH-----DRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLND 195 (200)
Q Consensus 121 ~~f~~~~~~~-----~~~l~lGftFSFP~~q~~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivND 195 (200)
++|+++++.. ++.+||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|++ ++|+|+|||||
T Consensus 152 ~~fl~~~~~~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~-l~v~v~AlvND 230 (497)
T PLN02405 152 AKFVATEGEDFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVG-LDMRVSALVND 230 (497)
T ss_pred HHHHHhcccccccCcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcC-CCceEEEEEec
Confidence 9999987532 35799999999999999999999999999999999999999999999999998 89999999999
Q ss_pred CceeC
Q psy15536 196 TTGTY 200 (200)
Q Consensus 196 TVatL 200 (200)
|||||
T Consensus 231 TVGTL 235 (497)
T PLN02405 231 TIGTL 235 (497)
T ss_pred CHHHH
Confidence 99997
No 3
>PLN02914 hexokinase
Probab=100.00 E-value=9.6e-52 Score=379.66 Aligned_cols=153 Identities=41% Similarity=0.658 Sum_probs=142.7
Q ss_pred ccccccccccCCcccccccCccccceEEEecCCceeEEEEEEEcCCc--eEEEEEEEeecCcccccccchhHHHHHHHHH
Q psy15536 43 DKVKHWETERHGEKNNFPRKIEQGQFLALDLGGTNFRVILMHLKKGL--VTDEIVKHYHIPDELRLGSGLKLFDFLAACI 120 (200)
Q Consensus 43 ~~i~k~~~~~~~~v~~~P~g~E~G~f~alDlGGTnlRv~~v~l~g~~--~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i 120 (200)
++++|+|+ |+..+|+|+|.|.|||||||||||||++|+|.|++ .+++.+++|+||++++.+++++||||||+||
T Consensus 76 s~l~MlpT----yv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i 151 (490)
T PLN02914 76 GDLKMILS----YVDSLPSGNEKGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGL 151 (490)
T ss_pred CCcceecc----ccCCCCCCCeeeEEEEEecCCceEEEEEEEecCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHH
Confidence 45899988 67789999999999999999999999999999864 4677899999999999999999999999999
Q ss_pred HHHHhhccC-----CCcceeeeEEeecccccccCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEcc
Q psy15536 121 SDFVHEYQV-----HDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLND 195 (200)
Q Consensus 121 ~~f~~~~~~-----~~~~l~lGftFSFP~~q~~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivND 195 (200)
++|+++++. .++.+||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|++ ++|+|+|||||
T Consensus 152 ~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~WTKGF~~~gv~G~DVv~lL~~Al~r~~-l~v~v~AivND 230 (490)
T PLN02914 152 ANFVAKEGGKFHLPEGRKREIGFTFSFPVKQTSIDSGILMKWTKGFAVSGTAGKDVVACLNEAMERQG-LDMRVSALVND 230 (490)
T ss_pred HHHHHhccccccCCccccccceeeEeeeeecCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcC-CCceEEEEEEc
Confidence 999998752 235799999999999999999999999999999999999999999999999998 89999999999
Q ss_pred CceeC
Q psy15536 196 TTGTY 200 (200)
Q Consensus 196 TVatL 200 (200)
|||||
T Consensus 231 TVGTL 235 (490)
T PLN02914 231 TVGTL 235 (490)
T ss_pred CHHHH
Confidence 99997
No 4
>PLN02362 hexokinase
Probab=100.00 E-value=1.6e-51 Score=379.84 Aligned_cols=153 Identities=39% Similarity=0.593 Sum_probs=141.3
Q ss_pred ccccccccccCCcccccccCccccceEEEecCCceeEEEEEEEcCCceEEE--EEEEeecCcccccccchhHHHHHHHHH
Q psy15536 43 DKVKHWETERHGEKNNFPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDE--IVKHYHIPDELRLGSGLKLFDFLAACI 120 (200)
Q Consensus 43 ~~i~k~~~~~~~~v~~~P~g~E~G~f~alDlGGTnlRv~~v~l~g~~~~~~--~~~~~~ip~~~~~~~~~~lFd~ia~~i 120 (200)
++++|+|+ |+..+|+|+|+|.|||||||||||||++|+|.|++...+ .+++|+||+++|.+++++||||||+||
T Consensus 76 s~l~MlPT----yv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i 151 (509)
T PLN02362 76 SKLKMLLT----FVDDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSL 151 (509)
T ss_pred CCCceecC----ccCCCCCCCcceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHH
Confidence 45888888 677899999999999999999999999999999765544 447899999999999999999999999
Q ss_pred HHHHhhccCC-----CcceeeeEEeecccccccCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEcc
Q psy15536 121 SDFVHEYQVH-----DRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLND 195 (200)
Q Consensus 121 ~~f~~~~~~~-----~~~l~lGftFSFP~~q~~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivND 195 (200)
++|+++++.. .+.+||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|++ ++|+|+|||||
T Consensus 152 ~~fl~~~~~~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~-l~v~v~AlvND 230 (509)
T PLN02362 152 KQFVEKEENGSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRG-LDMRVAALVND 230 (509)
T ss_pred HHHHHhcCccccccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcC-CCcEEEEEEEc
Confidence 9999987643 25699999999999999999999999999999999999999999999999998 89999999999
Q ss_pred CceeC
Q psy15536 196 TTGTY 200 (200)
Q Consensus 196 TVatL 200 (200)
|||||
T Consensus 231 TVgTL 235 (509)
T PLN02362 231 TVGTL 235 (509)
T ss_pred CHHHH
Confidence 99997
No 5
>PLN02596 hexokinase-like
Probab=100.00 E-value=1.5e-50 Score=371.76 Aligned_cols=152 Identities=26% Similarity=0.471 Sum_probs=141.7
Q ss_pred ccccccccccCCcccccccCccccceEEEecCCceeEEEEEEEcCCce--EEEEEEEeecCcccccccchhHHHHHHHHH
Q psy15536 43 DKVKHWETERHGEKNNFPRKIEQGQFLALDLGGTNFRVILMHLKKGLV--TDEIVKHYHIPDELRLGSGLKLFDFLAACI 120 (200)
Q Consensus 43 ~~i~k~~~~~~~~v~~~P~g~E~G~f~alDlGGTnlRv~~v~l~g~~~--~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i 120 (200)
++++|+|+ |+..+|+|+|.|.|||||+|||||||++|+|.|+.. .++.+++|+||++++.+++++||||||+||
T Consensus 77 s~l~MlpT----yv~~lPtG~E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i 152 (490)
T PLN02596 77 TTLNMLVS----YVASLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALEL 152 (490)
T ss_pred CCCceecc----cCCCCCCCCcceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHH
Confidence 46899988 678899999999999999999999999999998743 677889999999999999999999999999
Q ss_pred HHHHhhccCC-----CcceeeeEEeecccccccCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEcc
Q psy15536 121 SDFVHEYQVH-----DRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLND 195 (200)
Q Consensus 121 ~~f~~~~~~~-----~~~l~lGftFSFP~~q~~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivND 195 (200)
++|+++++.. ++.+||||||||||+|+++++|+|++| |||++++++|+||+++|++|++|++ ++++|+||+||
T Consensus 153 ~~fl~~~~~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~W-KgF~~~~~vG~Dvv~lL~~Al~r~~-l~v~v~AivND 230 (490)
T PLN02596 153 AKFVAEHPGDEADTPERVKKLGFTVSYPVDQAAASSGSAIKW-KSFSADDTVGKALVNDINRALEKHG-LKIRVFALVDD 230 (490)
T ss_pred HHHHHhhccccccCcccccccceEEeeeeeecCCCCEEEEEe-ccccCCCccCcHHHHHHHHHHHhcC-CCceEEEEEEc
Confidence 9999887543 246999999999999999999999999 9999999999999999999999998 89999999999
Q ss_pred CceeC
Q psy15536 196 TTGTY 200 (200)
Q Consensus 196 TVatL 200 (200)
|||||
T Consensus 231 TVgTL 235 (490)
T PLN02596 231 TIGNL 235 (490)
T ss_pred CHHHH
Confidence 99997
No 6
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=1.9e-50 Score=369.84 Aligned_cols=154 Identities=36% Similarity=0.638 Sum_probs=144.0
Q ss_pred hccccccccccCCcccccccCccccceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccc---------cchhH
Q psy15536 42 ADKVKHWETERHGEKNNFPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLG---------SGLKL 112 (200)
Q Consensus 42 ~~~i~k~~~~~~~~v~~~P~g~E~G~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~---------~~~~l 112 (200)
-++++|+|+ |+..+|+|.|.|.|||||||||||||++|+|.|++.+++.+++|+||++++.+ ++++|
T Consensus 54 ~s~l~Mlps----~v~~lPtG~E~G~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~l 129 (464)
T PTZ00107 54 ECSFKMLDS----CVYNLPTGKEKGVYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDL 129 (464)
T ss_pred CCCcccccc----ccCCCCCCCccceEEEEecCCceEEEEEEEeCCCCceeeEEEEEeCCHHHhccccccccccCCHHHH
Confidence 356899988 67789999999999999999999999999999988888899999999999998 89999
Q ss_pred HHHHHHHHHHHHhhcc-C--CCcceeeeEEeecccccccCCceEEEeeccceec-----CCCCCccHHHHHHHHHHHcCC
Q psy15536 113 FDFLAACISDFVHEYQ-V--HDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKS-----SGVEKEDVVKMLKDAIHRRQD 184 (200)
Q Consensus 113 Fd~ia~~i~~f~~~~~-~--~~~~l~lGftFSFP~~q~~~~~~~li~wtKgf~~-----~~~~g~dv~~~L~~al~r~~~ 184 (200)
|||||+||++|+++++ . ..+.+||||||||||+|+++++|+|++|||||++ ++++|+||+++|++||+|++
T Consensus 130 Fd~IA~~i~~fl~~~~~~~~~~~~l~lGfTFSFP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~- 208 (464)
T PTZ00107 130 FDHIAKSIKKMMEENGDPEDLNKPVPVGFTFSFPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNN- 208 (464)
T ss_pred HHHHHHHHHHHHHhccccccccccccceeEEeeeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcC-
Confidence 9999999999999876 2 2357999999999999999999999999999999 89999999999999999997
Q ss_pred CCceEEEEEccCceeC
Q psy15536 185 NHVEIVCVLNDTTGTY 200 (200)
Q Consensus 185 ~~v~v~aivNDTVatL 200 (200)
++++|+||||||||||
T Consensus 209 l~v~v~AivNDTVgTL 224 (464)
T PTZ00107 209 VPANVVAVLNDTVGTL 224 (464)
T ss_pred CCceEEEEEEcCHHHH
Confidence 8999999999999997
No 7
>KOG1369|consensus
Probab=100.00 E-value=5.9e-47 Score=344.55 Aligned_cols=152 Identities=47% Similarity=0.831 Sum_probs=142.7
Q ss_pred ccccccccCCcccccccCccccceEEEecCCceeEEEEEEEcCCc-eEEEEEEEeecCcccccccchhHHHHHHHHHHHH
Q psy15536 45 VKHWETERHGEKNNFPRKIEQGQFLALDLGGTNFRVILMHLKKGL-VTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 123 (200)
Q Consensus 45 i~k~~~~~~~~v~~~P~g~E~G~f~alDlGGTnlRv~~v~l~g~~-~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f 123 (200)
++|+|+ ++..+|.|+|.|.|||||+|||||||++|+|.|++ .+.+..++|+||+++|.+++++||||||+|+++|
T Consensus 69 ~~mlpt----~V~~lP~G~E~G~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F 144 (474)
T KOG1369|consen 69 VKMLPT----YVPDLPDGTEKGKFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYAIPEEIMQGTGEELFDFIARCLADF 144 (474)
T ss_pred cccchh----hcccCCCCCcCCCEEEEecCCCceEEEEEEecCCcccceeeeeeEecCHHHHcCchHHHHHHHHHHHHHH
Confidence 778877 78899999999999999999999999999999987 4566778999999999999999999999999999
Q ss_pred HhhccCCCcc-eeeeEEeecccccccCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEccCceeC
Q psy15536 124 VHEYQVHDRV-IPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLNDTTGTY 200 (200)
Q Consensus 124 ~~~~~~~~~~-l~lGftFSFP~~q~~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivNDTVatL 200 (200)
+++++..+.+ +||||||||||+|+|+++|+|++|||||++++++|+|++++|++||+|++...+.|+|++|||||||
T Consensus 145 ~~~~~~~~~~~l~lgFTFSfP~~Q~si~~g~L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl 222 (474)
T KOG1369|consen 145 LDKMGLKGASKLPLGFTFSFPCRQTSIDKGTLIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTL 222 (474)
T ss_pred HHHhccccccccccceEEeeeeeecccccceEEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhH
Confidence 9998876555 9999999999999999999999999999999999999999999999999955599999999999996
No 8
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-43 Score=313.89 Aligned_cols=151 Identities=38% Similarity=0.588 Sum_probs=141.3
Q ss_pred ccccccccCCcccccccCccccceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccc-cchhHHHHHHHHHHHH
Q psy15536 45 VKHWETERHGEKNNFPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLG-SGLKLFDFLAACISDF 123 (200)
Q Consensus 45 i~k~~~~~~~~v~~~P~g~E~G~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~-~~~~lFd~ia~~i~~f 123 (200)
+.|.|+ |+..+|.+.|.|.+||||+||||||||+|+|.|++++++.+.++.+|.+.... +.++||++||++++.|
T Consensus 58 l~MIP~----~v~~~p~g~e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~~sks~lp~e~~~~~~~~~l~~~iadrl~~f 133 (466)
T COG5026 58 LPMIPT----WVAPLPTGNESGSVLAIDLGGTNLRVCLVVLGGDGTFDIEQSKSFLPVECRDSESRDELFGFIADRLAAF 133 (466)
T ss_pred cccccc----cccCCCCCCCCCCEEEEecCCceEEEEEEEeCCCCCcccccCcccCchhhccCCChHHHHHHHHHHHHHH
Confidence 455555 88899999999999999999999999999999999999988888899999887 6899999999999999
Q ss_pred HhhccCC--CcceeeeEEeecccccccCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEccCceeC
Q psy15536 124 VHEYQVH--DRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLNDTTGTY 200 (200)
Q Consensus 124 ~~~~~~~--~~~l~lGftFSFP~~q~~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivNDTVatL 200 (200)
+++++.. .+++|+|||||||+.|+++++|.|++|||||++++++|+|++++|+++|++++ ++|+|+||+|||||||
T Consensus 134 i~~~~~~~~~~~l~~gfTFSYP~~q~sin~g~l~rwTKgf~i~e~ig~dvv~~l~e~l~~r~-~pi~v~aviNDttgtl 211 (466)
T COG5026 134 IKEQHPSGYGSKLPIGFTFSYPLNQTSINEGQLIRWTKGFDIPEVIGTDVVRLLQEALSARN-LPIRVVAVINDTTGTL 211 (466)
T ss_pred HHHhCchhccCcceeeEEEeccccccccCceeeEeecccCcchhhhhhhHHHHHHHHHHhcC-CceEEEEEecccHHHH
Confidence 9998763 56899999999999999999999999999999999999999999999999998 7799999999999996
No 9
>PLN02405 hexokinase
Probab=99.69 E-value=7.1e-18 Score=156.16 Aligned_cols=68 Identities=28% Similarity=0.482 Sum_probs=59.9
Q ss_pred CccceeeeccHHHhhhccccCccceEEEEeecccceehhhhhccccccccccCCcccccccCccccceE
Q psy15536 1 MQARYQMDHLRGTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHWETERHGEKNNFPRKIEQGQFL 69 (200)
Q Consensus 1 ~~~~~~~ndtvgtlla~~~~~~~~~igli~gtg~Na~Y~e~~~~i~k~~~~~~~~v~~~P~g~E~G~f~ 69 (200)
+++.+|+|||||||++++|.|++|.||+|+|||+|+||+|++++++||..+.. ....|++|+|||.|-
T Consensus 222 v~v~AlvNDTVGTL~a~aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~-~~~~miINtEwG~F~ 289 (497)
T PLN02405 222 MRVSALVNDTIGTLAGGRYYNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLP-KSGEMVINMEWGNFR 289 (497)
T ss_pred ceEEEEEecCHHHHHHhhcCCCCceEEEEEeCCeeeEEEeecccCccccccCC-CCCeEEEEeccccCC
Confidence 46789999999999999999999999999999999999999999999965321 235789999999884
No 10
>PLN02914 hexokinase
Probab=99.69 E-value=9.5e-18 Score=154.98 Aligned_cols=68 Identities=28% Similarity=0.483 Sum_probs=60.1
Q ss_pred CccceeeeccHHHhhhccccCccceEEEEeecccceehhhhhccccccccccCCcccccccCccccceE
Q psy15536 1 MQARYQMDHLRGTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHWETERHGEKNNFPRKIEQGQFL 69 (200)
Q Consensus 1 ~~~~~~~ndtvgtlla~~~~~~~~~igli~gtg~Na~Y~e~~~~i~k~~~~~~~~v~~~P~g~E~G~f~ 69 (200)
+++.+|+|||||||++++|.|++|.||+|+|||+|+||+|++++++||+.+.. ....|++|+|||.|-
T Consensus 222 v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNacY~E~~~~i~k~~~~~~-~~~~miINtEwG~F~ 289 (490)
T PLN02914 222 MRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDAIPKLQGQKS-SSGRTIINTEWGAFS 289 (490)
T ss_pred ceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeEEEeecccccccccCCC-CCceEEEeccccccC
Confidence 46789999999999999999999999999999999999999999999965322 234689999999983
No 11
>PLN02362 hexokinase
Probab=99.68 E-value=1.4e-17 Score=154.51 Aligned_cols=68 Identities=31% Similarity=0.493 Sum_probs=60.1
Q ss_pred CccceeeeccHHHhhhccccCccceEEEEeecccceehhhhhccccccccccCCcccccccCccccceE
Q psy15536 1 MQARYQMDHLRGTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHWETERHGEKNNFPRKIEQGQFL 69 (200)
Q Consensus 1 ~~~~~~~ndtvgtlla~~~~~~~~~igli~gtg~Na~Y~e~~~~i~k~~~~~~~~v~~~P~g~E~G~f~ 69 (200)
+++.+|+|||||||++++|.+++|.+|+|+|||+|+||+|+++++.|++.... ....|++|+|||.|.
T Consensus 222 v~v~AlvNDTVgTL~a~aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~-~~~~miINtEwG~F~ 289 (509)
T PLN02362 222 MRVAALVNDTVGTLALGHYHDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLT-TSGSMVVNMEWGNFW 289 (509)
T ss_pred cEEEEEEEcCHHHHHhhhcCCCCceEEEEEECCccceEeeehhhcccccccCC-CCCcEEEEeeccCCC
Confidence 35789999999999999999999999999999999999999999999965322 234689999999994
No 12
>PLN02596 hexokinase-like
Probab=99.68 E-value=1.8e-17 Score=153.23 Aligned_cols=67 Identities=27% Similarity=0.450 Sum_probs=59.3
Q ss_pred ccceeeeccHHHhhhccccCccceEEEEeecccceehhhhhccccccccccCCcccccccCccccceE
Q psy15536 2 QARYQMDHLRGTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHWETERHGEKNNFPRKIEQGQFL 69 (200)
Q Consensus 2 ~~~~~~ndtvgtlla~~~~~~~~~igli~gtg~Na~Y~e~~~~i~k~~~~~~~~v~~~P~g~E~G~f~ 69 (200)
++.+|+|||||||++++|.|++|.+|+|+|||+|+||+|++++++|+..... ....|++|+|||.|-
T Consensus 223 ~v~AivNDTVgTL~a~aY~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~~~-~~~~miINtEwG~F~ 289 (490)
T PLN02596 223 RVFALVDDTIGNLAGGRYYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSP-ESQEIVISTEWGNFN 289 (490)
T ss_pred eEEEEEEcCHHHHHhhhcCCCCeEEEEEEecccceEEEEEccccccccCCCC-CCCeEEEEeccccCC
Confidence 5779999999999999999999999999999999999999999999954322 234789999999984
No 13
>KOG1369|consensus
Probab=99.66 E-value=2.8e-17 Score=150.54 Aligned_cols=75 Identities=32% Similarity=0.482 Sum_probs=65.6
Q ss_pred ccceeeeccHHHhhhccccCccceEEEEeecccceehhhhhccccccccccCCcccccccCccccceE--EEecCCcee
Q psy15536 2 QARYQMDHLRGTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHWETERHGEKNNFPRKIEQGQFL--ALDLGGTNF 78 (200)
Q Consensus 2 ~~~~~~ndtvgtlla~~~~~~~~~igli~gtg~Na~Y~e~~~~i~k~~~~~~~~v~~~P~g~E~G~f~--alDlGGTnl 78 (200)
.+-+++|||||||++++|.+++|.||+|+|||||+||+|+.++++||+...... .|.+|+|||.|- ..|+=.|-+
T Consensus 210 ~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~~~~i~k~~~~~~~~--~miIN~EWG~F~~~~~~l~~T~y 286 (474)
T KOG1369|consen 210 DVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMEDMRNIEKVEGDAGRG--PMCINTEWGAFGDNSLDLPRTEY 286 (474)
T ss_pred EEEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeeeccchhhcccccCCC--ceEEEccccCCCccccccchhhH
Confidence 466899999999999999999999999999999999999999999998754322 799999999997 667655554
No 14
>PTZ00107 hexokinase; Provisional
Probab=99.53 E-value=3.5e-15 Score=137.47 Aligned_cols=60 Identities=32% Similarity=0.467 Sum_probs=51.1
Q ss_pred CccceeeeccHHHhhhccccC----ccceEEEEeecccceehhhhhccccccccccCCcccccccCccccce
Q psy15536 1 MQARYQMDHLRGTLLQGASLD----HKTAIGLILGTGSNACYLEKADKVKHWETERHGEKNNFPRKIEQGQF 68 (200)
Q Consensus 1 ~~~~~~~ndtvgtlla~~~~~----~~~~igli~gtg~Na~Y~e~~~~i~k~~~~~~~~v~~~P~g~E~G~f 68 (200)
+++.+|+|||||||++++|.+ ++|.||+|+|||+|+||+|+... .+. ...|++|+|||.|
T Consensus 211 v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~NacY~E~~~~---~~~-----~~~~iINtEwG~F 274 (464)
T PTZ00107 211 ANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSNACYFEPEVS---AYG-----YAGTPINMECGNF 274 (464)
T ss_pred ceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccccceeeehhhc---cCC-----CCcEEEEeecccc
Confidence 467899999999999999999 99999999999999999996432 111 2358999999988
No 15
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=1.9e-14 Score=129.86 Aligned_cols=79 Identities=28% Similarity=0.418 Sum_probs=64.4
Q ss_pred ccceeeeccHHHhhhccccCccceEEEEeecccceehhhhhccccccccccCCcccccccCccccceE--EEecCCceeE
Q psy15536 2 QARYQMDHLRGTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHWETERHGEKNNFPRKIEQGQFL--ALDLGGTNFR 79 (200)
Q Consensus 2 ~~~~~~ndtvgtlla~~~~~~~~~igli~gtg~Na~Y~e~~~~i~k~~~~~~~~v~~~P~g~E~G~f~--alDlGGTnlR 79 (200)
.+-+++|||+||+|++.|.++++.||+|+|||+|+||+|+.+.++|++.+....-..|.+|+|||.|- =+.++-|.+-
T Consensus 199 ~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~d~~~~~~pm~iN~EwGsfdn~~~~Lp~t~yd 278 (466)
T COG5026 199 RVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPRDDLPETGPMLINCEWGSFDNELSVLPRTKYD 278 (466)
T ss_pred EEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCccccccccCCeEEEecccccCcceeecccccee
Confidence 45689999999999999999999999999999999999999999999855333344589999999986 2234444443
Q ss_pred E
Q psy15536 80 V 80 (200)
Q Consensus 80 v 80 (200)
|
T Consensus 279 v 279 (466)
T COG5026 279 V 279 (466)
T ss_pred e
Confidence 3
No 16
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=98.90 E-value=4.4e-10 Score=95.72 Aligned_cols=42 Identities=40% Similarity=0.748 Sum_probs=36.4
Q ss_pred cceEEEEeecccceehhhhhccccccccccCCcccccccCccccce
Q psy15536 23 KTAIGLILGTGSNACYLEKADKVKHWETERHGEKNNFPRKIEQGQF 68 (200)
Q Consensus 23 ~~~igli~gtg~Na~Y~e~~~~i~k~~~~~~~~v~~~P~g~E~G~f 68 (200)
+|.||+|+|||+|+||+|++++++++++ ....|.+|+|||.|
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~~~~~----~~~~~iINtEwg~f 42 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIPKLKG----KDGKMIINTEWGNF 42 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-TTSST----SSSEEEEEE-GGGT
T ss_pred CcEEEEEEeCCeeEEEeeecccCccccc----cCCeEEEEeecCCC
Confidence 5899999999999999999999999977 34578999999999
No 17
>PRK09698 D-allose kinase; Provisional
Probab=97.94 E-value=0.00012 Score=63.34 Aligned_cols=112 Identities=17% Similarity=0.321 Sum_probs=71.0
Q ss_pred ccceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeecc-
Q psy15536 65 QGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSFP- 143 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSFP- 143 (200)
.+.++++|+|||++|++++++.|+- +.++.++.|.. .+ .+.++.+++.|.+++++.+ . ..+|+.+++|
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~i---~~~~~~~~~~~---~~-~~~~~~l~~~i~~~~~~~~--~--~i~gigia~pG 71 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGEI---LHCEKKRTAEV---IA-PDLVSGLGEMIDEYLRRFN--A--RCHGIVMGFPA 71 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCCE---EEEEEeCCccc---cc-hHHHHHHHHHHHHHHHHcC--C--CeeEEEEeCCc
Confidence 3468999999999999999998752 34455555532 12 2349999999999988753 2 2345555555
Q ss_pred -cccccCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEccCce
Q psy15536 144 -MHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLNDTTG 198 (200)
Q Consensus 144 -~~q~~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivNDTVa 198 (200)
++. +.+.++. +..+..++..+.++.+.|++.+ + +| +.+.||..+
T Consensus 72 ~vd~---~~g~i~~-~~~~~~~~~~~~~l~~~l~~~~---~-~p---v~v~NDa~a 116 (302)
T PRK09698 72 LVSK---DRRTVIS-TPNLPLTALDLYDLADKLENTL---N-CP---VFFSRDVNL 116 (302)
T ss_pred ceeC---CCCEEEe-cCCCCccccccCCHHHHHHHHh---C-CC---EEEcchHhH
Confidence 543 3444433 3333323455668888877664 3 33 578898754
No 18
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=97.79 E-value=0.00022 Score=56.83 Aligned_cols=103 Identities=22% Similarity=0.331 Sum_probs=71.5
Q ss_pred EEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeecccccccC
Q psy15536 70 ALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSFPMHQRSL 149 (200)
Q Consensus 70 alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSFP~~q~~~ 149 (200)
+||+|+|.+|++++++.|+ .+.++++++| .+.+++.+.+.+.+.+++.+.+.. -+|+.++=|++..
T Consensus 1 gidig~~~i~~~l~d~~g~---ii~~~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~----gIgi~~pG~v~~~-- 66 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGE---IIYSESIPTP-----TSPEELLDALAELIERLLADYGRS----GIGISVPGIVDSE-- 66 (179)
T ss_dssp EEEEESSEEEEEEEETTSC---EEEEEEEEHH-----SSHHHHHHHHHHHHHHHHHHHTCE----EEEEEESSEEETT--
T ss_pred CEEECCCEEEEEEECCCCC---EEEEEEEECC-----CCHHHHHHHHHHHHHHHHhhcccc----cEEEeccccCcCC--
Confidence 5899999999999999885 2355667776 456899999999999998875422 4555555556652
Q ss_pred CceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEccCce
Q psy15536 150 DSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLNDTTG 198 (200)
Q Consensus 150 ~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivNDTVa 198 (200)
++.++.... .+..+.++.+.|++.+ + + ++.+.||..+
T Consensus 67 -~g~i~~~~~----~~~~~~~l~~~l~~~~---~-~---pv~i~Nd~~~ 103 (179)
T PF00480_consen 67 -KGRIISSPN----PGWENIPLKEELEERF---G-V---PVIIENDANA 103 (179)
T ss_dssp -TTEEEECSS----GTGTTCEHHHHHHHHH---T-S---EEEEEEHHHH
T ss_pred -CCeEEecCC----CCcccCCHHHHhhccc---c-e---EEEEecCCCc
Confidence 245554332 3445578888888776 2 2 4578898753
No 19
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.0006 Score=59.38 Aligned_cols=117 Identities=20% Similarity=0.254 Sum_probs=73.8
Q ss_pred CccccceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEee
Q psy15536 62 KIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFS 141 (200)
Q Consensus 62 g~E~G~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFS 141 (200)
+.+...+++||+|||+++++++++.|+ .+..+..+.|..... +++.+-|++.++++++..+ .+...+|+-++
T Consensus 2 ~~~~~~~lgidIggt~i~~~l~d~~g~---~l~~~~~~~~~~~~~---~~~~~~i~~~i~~~~~~~~--~~~~~iGIgi~ 73 (314)
T COG1940 2 NPEAMTVLGIDIGGTKIKVALVDLDGE---ILLRERIPTPTPDPE---EAILEAILALVAELLKQAQ--GRVAIIGIGIP 73 (314)
T ss_pred CccCcEEEEEEecCCEEEEEEECCCCc---EEEEEEEecCCCCch---hHHHHHHHHHHHHHHHhcC--CcCceEEEEec
Confidence 345668899999999999999999886 234455555553222 6888899999999888764 33456777777
Q ss_pred cccccccCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEccCce
Q psy15536 142 FPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLNDTTG 198 (200)
Q Consensus 142 FP~~q~~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivNDTVa 198 (200)
-|..... +..+.+.-.+. ...+-|+.+.|++.+. +| +.|-||+.+
T Consensus 74 ~pg~~~~---~~~~~~~~~~~--~~~~~~l~~~L~~~~~----~P---v~veNDan~ 118 (314)
T COG1940 74 GPGDVDN---GTVIVPAPNLG--WWNGVDLAEELEARLG----LP---VFVENDANA 118 (314)
T ss_pred cceeccC---CcEEeecCCCC--ccccccHHHHHHHHHC----CC---EEEecHHHH
Confidence 7765432 22222111111 1223467777776552 33 367788643
No 20
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.61 E-value=0.0011 Score=47.72 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=52.7
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeeccccc
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSFPMHQ 146 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSFP~~q 146 (200)
++++||+|||+.++++++-.|+-. ... +...+. ..+++++.+.+.+.++ . +-++-.++|-..
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~~~--~~~-~~~~~~-----~~~~~~~~l~~~i~~~----~------~~~i~Ig~pg~v 63 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKLA--DPL-EVIPRT-----NKEADAARLKKLIKKY----Q------PDLIVIGLPLNM 63 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCCEe--cCE-EEEEec-----CcchHHHHHHHHHHHh----C------CCEEEEeCCcCC
Confidence 479999999999999997655421 111 111111 3466777777766653 1 234445555433
Q ss_pred ccCCceEEE-eeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEccCceeC
Q psy15536 147 RSLDSGILV-TWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLNDTTGTY 200 (200)
Q Consensus 147 ~~~~~~~li-~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivNDTVatL 200 (200)
+|.+. .| . .++.+.|++ + .++ .+.+.||.-+|+
T Consensus 64 ----~g~~~~~~---------~-~~l~~~l~~----~--~~~-pv~~~nDa~st~ 97 (99)
T smart00732 64 ----NGTASRET---------E-EAFAELLKE----R--FNL-PVVLVDERLATV 97 (99)
T ss_pred ----CCCcCHHH---------H-HHHHHHHHH----h--hCC-cEEEEeCCcccc
Confidence 12221 12 1 344555444 3 233 357999998774
No 21
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.48 E-value=0.0022 Score=54.55 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=65.8
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeecc--cc
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSFP--MH 145 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSFP--~~ 145 (200)
++++|+|||++|++++++.|+- +.+++++.|. .+.+++.+.+.+.+.++..... ...|..+|.| ++
T Consensus 2 ~lgidiggt~i~~~l~d~~g~i---~~~~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~-----~~~gIgv~~pG~vd 69 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQR---IWHKRVPTPR----EDYPQLLQILRDLTEEADTYCG-----VQGSVGIGIPGLPN 69 (256)
T ss_pred EEEEEECCCcEEEEEECCCCCE---EEEEEecCCC----cCHHHHHHHHHHHHHHHHhhcC-----CCceEEEEecCcEE
Confidence 6899999999999999998752 2444555553 2346788888888877643321 2236666666 43
Q ss_pred cccCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEccCc
Q psy15536 146 QRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLNDTT 197 (200)
Q Consensus 146 q~~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivNDTV 197 (200)
. +.+.+ .+. ..+.-.+.++.+.|++.+ + .| +.+-||+-
T Consensus 70 ~---~~g~i-~~~---~~~~w~~~~l~~~l~~~~---~-~p---V~leNDan 107 (256)
T PRK13311 70 A---DDGTV-FTA---NVPSAMGQPLQADLSRLI---Q-RE---VRIDNDAN 107 (256)
T ss_pred C---CCCEE-Ecc---CCCcccCCChHHHHHHHH---C-CC---EEEEchhh
Confidence 2 34443 343 223334568888877665 2 33 57889964
No 22
>PRK12408 glucokinase; Provisional
Probab=97.24 E-value=0.00097 Score=59.28 Aligned_cols=29 Identities=31% Similarity=0.525 Sum_probs=22.5
Q ss_pred ccCccccc-eEEEecCCceeEEEEEEEcCC
Q psy15536 60 PRKIEQGQ-FLALDLGGTNFRVILMHLKKG 88 (200)
Q Consensus 60 P~g~E~G~-f~alDlGGTnlRv~~v~l~g~ 88 (200)
.++.|.+. ++++|+||||.|+++++-.+.
T Consensus 9 ~~~~~~~~~~L~~DIGGT~i~~al~d~~g~ 38 (336)
T PRK12408 9 AVAVPRPESFVAADVGGTHVRVALVCASPD 38 (336)
T ss_pred cccCcccccEEEEEcChhhhheeEEeccCC
Confidence 34455444 899999999999999986554
No 23
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.21 E-value=0.0051 Score=53.34 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=66.3
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeecccccc
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSFPMHQR 147 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSFP~~q~ 147 (200)
++++|+|||++|++++++.|+- +.++.++.|. .+.+++.+.|++.+.++....+. ...+|+.+.=|++.
T Consensus 2 ~lgidig~t~i~~~l~d~~g~i---~~~~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~~---~~~igia~pG~vd~- 70 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLEL---QWEERVPTPR----DSYDAFLDAVCELVAEADQRFGC---KGSVGIGIPGMPET- 70 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCcE---EEEEEecCCC----cCHHHHHHHHHHHHHHHHhhcCC---cceEEEeCCCcccC-
Confidence 6899999999999999997742 2334455553 24578888988888887654321 12366666666653
Q ss_pred cCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEccCc
Q psy15536 148 SLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLNDTT 197 (200)
Q Consensus 148 ~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivNDTV 197 (200)
+.+.+. +. ..++-.+-++.+.|++.+ + +| +.+-||.-
T Consensus 71 --~~g~~~-~~---~~~~w~~~~l~~~l~~~~---~-~p---V~ieNDa~ 107 (303)
T PRK13310 71 --EDGTLY-AA---NVPAASGKPLRADLSARL---G-RD---VRLDNDAN 107 (303)
T ss_pred --CCCEEe-cc---CcccccCCcHHHHHHHHH---C-CC---eEEeccHh
Confidence 344443 22 123334557777776654 3 33 46889874
No 24
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=97.18 E-value=0.0061 Score=52.52 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=65.4
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeecccccc
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSFPMHQR 147 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSFP~~q~ 147 (200)
++++|+|||++|++++++.|+- +..+.++.|.. .+.+++.+.|++.+.++..+ ...+|+.+.-|++.
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i---~~~~~~~~~~~---~~~~~~~~~i~~~i~~~~~~------~~~igi~~pG~vd~- 69 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQI---RQRRQIPTPAS---QTPEALRQALSALVSPLQAQ------ADRVAVASTGIIND- 69 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcE---EEEEEecCCCC---CCHHHHHHHHHHHHHHhhhc------CcEEEEeCcccccC-
Confidence 7999999999999999998752 23444555532 24567888888888877532 23466666666652
Q ss_pred cCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEccCce
Q psy15536 148 SLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLNDTTG 198 (200)
Q Consensus 148 ~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivNDTVa 198 (200)
+....+. .....+..+.|+.+.|++.+ + +| +.+.||+.+
T Consensus 70 ----~~~~~~~-~~~~~~w~~~~l~~~l~~~~---~-~p---v~v~NDa~a 108 (291)
T PRK05082 70 ----GILTALN-PHNLGGLLHFPLVQTLEQLT---D-LP---TIALNDAQA 108 (291)
T ss_pred ----CeeEEec-CCCCccccCCChHHHHHHHh---C-CC---EEEECcHHH
Confidence 2221111 11122334667777776543 3 33 578999754
No 25
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=97.17 E-value=0.0047 Score=53.69 Aligned_cols=107 Identities=13% Similarity=0.237 Sum_probs=67.8
Q ss_pred EEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeecc--ccc
Q psy15536 69 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSFP--MHQ 146 (200)
Q Consensus 69 ~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSFP--~~q 146 (200)
+++|+|||++|++++++.|+- +.+..++.+ .+.+++++.+.+.|.+++++.+... ...+|+.++.| ++.
T Consensus 1 lgidig~t~~~~~l~d~~g~i---~~~~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~~-~~i~gIgva~pG~vd~ 71 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNI---LSKWKVPTD-----TTPETIVDAIASAVDSFIQHIAKVG-HEIVAIGIGAPGPVNR 71 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCE---EEEEEeCCC-----CCHHHHHHHHHHHHHHHHHhcCCCc-cceEEEEEeccccccC
Confidence 479999999999999998752 233444443 1458899999999999998765332 23466666666 543
Q ss_pred ccCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEccCce
Q psy15536 147 RSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLNDTTG 198 (200)
Q Consensus 147 ~~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivNDTVa 198 (200)
.++.+ .|.-.+.. .+.++.+.|++.+ + +| +.+.||+-+
T Consensus 72 ---~~g~~-~~~~~~~w---~~~~l~~~l~~~~---~-~p---v~v~NDa~~ 109 (318)
T TIGR00744 72 ---QRGTV-YFAVNLDW---KQEPLKEKVEARV---G-LP---VVVENDANA 109 (318)
T ss_pred ---CCCEE-EecCCCCC---CCCCHHHHHHHHH---C-CC---EEEechHHH
Confidence 33443 23322222 3446777766544 2 33 578999754
No 26
>PRK09557 fructokinase; Reviewed
Probab=97.16 E-value=0.0057 Score=53.03 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=64.2
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeecc--cc
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSFP--MH 145 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSFP--~~ 145 (200)
++++|+|||++|++++++.|+- +.+++++.|. .+.+++.+.|++.+.++....+ ...|+..|.| ++
T Consensus 2 ~lgidig~t~~~~~l~d~~g~i---~~~~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~-----~~~gIgi~~pG~vd 69 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGEE---LFRKRLPTPR----DDYQQTIEAIATLVDMAEQATG-----QRGTVGVGIPGSIS 69 (301)
T ss_pred EEEEEECCCcEEEEEECCCCCE---EEEEEecCCC----CCHHHHHHHHHHHHHHHHhhcC-----CceEEEecCcccCc
Confidence 6899999999999999997752 2344455542 2446788888888887765432 1245555554 54
Q ss_pred cccCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEccCce
Q psy15536 146 QRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLNDTTG 198 (200)
Q Consensus 146 q~~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivNDTVa 198 (200)
. ++|++...... -..+.++.+.|++.+ + +| +.+.||..+
T Consensus 70 ~---~~g~i~~~~~~----~~~~~~l~~~l~~~~---~-~p---v~~~NDa~a 108 (301)
T PRK09557 70 P---YTGLVKNANST----WLNGQPLDKDLSARL---N-RE---VRLANDANC 108 (301)
T ss_pred C---CCCeEEecCCc----cccCCCHHHHHHHHH---C-CC---EEEccchhH
Confidence 3 34554432111 112457777777665 2 33 468899764
No 27
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=96.81 E-value=0.0036 Score=60.16 Aligned_cols=67 Identities=24% Similarity=0.364 Sum_probs=38.5
Q ss_pred cceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeecccc
Q psy15536 66 GQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSFPMH 145 (200)
Q Consensus 66 G~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSFP~~ 145 (200)
|..+++|+||||.|+++++-.| .. ...++++-+. |+.+.+.|.+|+++.+. .+...+|+..-=|++
T Consensus 18 ~~~L~iDIGGT~ir~al~~~~g--~i-~~~~~~~t~~----------~~~~~~~i~~~l~~~~~-~~~~~igig~pGpVd 83 (638)
T PRK14101 18 GPRLLADVGGTNARFALETGPG--EI-TQIRVYPGAD----------YPTLTDAIRKYLKDVKI-GRVNHAAIAIANPVD 83 (638)
T ss_pred CCEEEEEcCchhheeeeecCCC--cc-cceeEEecCC----------CCCHHHHHHHHHHhcCC-CCcceEEEEEecCcc
Confidence 4589999999999999985333 22 2223332221 34455667777765432 222345555555566
Q ss_pred c
Q psy15536 146 Q 146 (200)
Q Consensus 146 q 146 (200)
.
T Consensus 84 ~ 84 (638)
T PRK14101 84 G 84 (638)
T ss_pred C
Confidence 4
No 28
>PRK00292 glk glucokinase; Provisional
Probab=96.62 E-value=0.0073 Score=52.83 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.1
Q ss_pred ceEEEecCCceeEEEEEEEcCC
Q psy15536 67 QFLALDLGGTNFRVILMHLKKG 88 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~ 88 (200)
.++++|+|||++|++++++.+.
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~~~ 24 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWANG 24 (316)
T ss_pred eEEEEEcCccceEEEEEecCCC
Confidence 3799999999999999998554
No 29
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=96.44 E-value=0.027 Score=47.17 Aligned_cols=59 Identities=12% Similarity=0.349 Sum_probs=41.9
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEeec--C-cccccccchhHHHHHHHHHHHHHhhc
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--P-DELRLGSGLKLFDFLAACISDFVHEY 127 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~i--p-~~~~~~~~~~lFd~ia~~i~~f~~~~ 127 (200)
|++||+|.|+.|+++++-.|+ .+...++.++. | +.....+.+++++.+.+++++.+++.
T Consensus 2 ~lgiDiGTts~K~~l~d~~g~-iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~ 63 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDGK-IVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQA 63 (245)
T ss_dssp EEEEEECSSEEEEEEEETTSC-EEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEcccceEEEEEeCCCC-EEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhc
Confidence 789999999999999995443 33344444433 2 12233467899999999999998875
No 30
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=96.43 E-value=0.0083 Score=52.63 Aligned_cols=65 Identities=28% Similarity=0.415 Sum_probs=36.7
Q ss_pred EEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccCC--CcceeeeEEeecccc
Q psy15536 69 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVH--DRVIPMGFTFSFPMH 145 (200)
Q Consensus 69 ~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~--~~~l~lGftFSFP~~ 145 (200)
|++|+||||.|+++++-.+....+ .+. +.. +.|+-+.+.|.+|+++.+.. ......|+..+-|++
T Consensus 1 l~~DIGGT~i~~glvd~~g~~l~~--~~~---~~~-------~~~~~l~~~i~~~l~~~~~~~~~~~~~~~Igi~Gpv~ 67 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPGEISQ--AKT---YSG-------LDFPSLEAVVRVYLEEHKVELKDPIAKGCFAIACPIT 67 (316)
T ss_pred CeEecCcceeeEEEEecCCCceee--eEE---Eec-------CCCCCHHHHHHHHHHhcccccCCCcCeEEEEEeCccc
Confidence 589999999999999765532111 111 110 12444555566666543221 112337777778874
No 31
>PTZ00288 glucokinase 1; Provisional
Probab=96.08 E-value=0.067 Score=49.08 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=61.2
Q ss_pred ccceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeecc-
Q psy15536 65 QGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSFP- 143 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSFP- 143 (200)
.+-+++.|+||||.|+++.++...+.........+++ ++..+..++.+++++.+....+....-. ....+ +|+.|
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a-~iAvAG 100 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFN--VTKTDIRELLEFFDEVLQKLKKNLSFIQ-RVAAG-AISVPG 100 (405)
T ss_pred CCeEEEEEecCCceEEEEEeccCCCCCceeEEEEecc--cccccHHHHHHHHHHHHHHHHhcCcccc-CcCeE-EEEEeC
Confidence 3468999999999999999994322112233333444 1223446666666666655443321111 12222 55554
Q ss_pred -cccccCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEccCce
Q psy15536 144 -MHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLNDTTG 198 (200)
Q Consensus 144 -~~q~~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivNDTVa 198 (200)
+..-. -.|....|.-.+.+++. .-.+ ++++-+.++||=.|
T Consensus 101 PV~~~~-~~~~~~~~~~~~~lTNl-pw~i-------------~~~~~~~liNDfeA 141 (405)
T PTZ00288 101 PVTGGQ-LAGPFNNLKGIARLTDY-PVEL-------------FPPGRSALLNDLEA 141 (405)
T ss_pred ceeCCE-eeccccccccccccCCC-Cchh-------------cCCCeEEEEEhHHH
Confidence 54211 11234777655555553 1101 56777899999544
No 32
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.34 E-value=0.074 Score=49.60 Aligned_cols=60 Identities=13% Similarity=0.291 Sum_probs=41.0
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEee--cC-cccccccchhHHHHHHHHHHHHHhhcc
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYH--IP-DELRLGSGLKLFDFLAACISDFVHEYQ 128 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~--ip-~~~~~~~~~~lFd~ia~~i~~f~~~~~ 128 (200)
+++||+|+|+.|+++++..|+- ....+..|+ .| ......+.+++++-+.+++++.+++.+
T Consensus 2 ~lgiDiGtt~~K~~l~d~~g~i-~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~ 64 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEENGKI-VAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLE 64 (505)
T ss_pred EEEEeccccceEEEEEcCCCCE-EEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCC
Confidence 6899999999999999976642 222333333 12 112233567899999999999887643
No 33
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=95.24 E-value=0.032 Score=49.47 Aligned_cols=101 Identities=21% Similarity=0.265 Sum_probs=52.4
Q ss_pred EEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeec--cccc
Q psy15536 69 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSF--PMHQ 146 (200)
Q Consensus 69 ~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSF--P~~q 146 (200)
|+-|+||||-|+++++..+...-....++|+- .....|.+.+.+.+++. ..+ . ..|-.-||+. |+..
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~~~~~~------~~~~s~~~~l~~~l~~~--~~~-~--~~p~~~~iavAGPV~~ 69 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDIRRYPS------ADFPSFEDALADYLAEL--DAG-G--PEPDSACIAVAGPVRD 69 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEEEEEEG------CCCCHHHHHHHHHHHHT--CHH-H--TCEEEEEEEESS-EET
T ss_pred CeEEeCcccEEEEEEEcCCCCccccccEEEec------CCcCCHHHHHHHHHHhc--ccC-C--CccceEEEEEecCccC
Confidence 57899999999999999876521223334432 23345555555544432 011 1 1233444444 5654
Q ss_pred ccCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCCceEEEEEccCce
Q psy15536 147 RSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVEIVCVLNDTTG 198 (200)
Q Consensus 147 ~~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~v~aivNDTVa 198 (200)
++.++..|. +.++ .+.|.+. +.++-+.++||=.|
T Consensus 70 ---~~~~lTN~~--W~i~-----------~~~l~~~--lg~~~v~liNDfeA 103 (316)
T PF02685_consen 70 ---GKVRLTNLP--WTID-----------ADELAQR--LGIPRVRLINDFEA 103 (316)
T ss_dssp ---TCEE-SSSC--CEEE-----------HHHCHCC--CT-TCEEEEEHHHH
T ss_pred ---CEEEecCCC--cccc-----------HHHHHHH--hCCceEEEEcccch
Confidence 566666553 3322 1222322 45556789999543
No 34
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.26 E-value=0.22 Score=46.66 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=48.0
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEEEEEEeecC-----cccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEee
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIP-----DELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFS 141 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip-----~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFS 141 (200)
-+++||+|.|+.|+++++..|+ .....+..|+.+ +.......+++++-+.+++++.+++.+...+ --.|+.+|
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~-~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~~-~I~aI~~s 81 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGN-QIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPAS-DIAAVSAT 81 (520)
T ss_pred EEEEEecCCCceEEEEECCCCC-EEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCcc-ceEEEEEE
Confidence 4789999999999999998775 333344444322 1122335688999999999998876433221 23466666
No 35
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=94.08 E-value=0.22 Score=46.27 Aligned_cols=61 Identities=18% Similarity=0.347 Sum_probs=42.0
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEeec--Ccc-cccccchhHHHHHHHHHHHHHhhccC
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--PDE-LRLGSGLKLFDFLAACISDFVHEYQV 129 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~i--p~~-~~~~~~~~lFd~ia~~i~~f~~~~~~ 129 (200)
+++||+|+|+.|+++++..|+ .....+..++. |.. ......+++|+.+.+++++.+++.+.
T Consensus 3 ~lgiDiGtt~iKa~l~d~~g~-~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~ 66 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKDGN-IVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGI 66 (493)
T ss_pred EEEEecCCCceEEEEECCCCC-EEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 689999999999999997764 23333333332 221 11224678999999999998877543
No 36
>PRK00047 glpK glycerol kinase; Provisional
Probab=93.73 E-value=0.29 Score=45.61 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=42.9
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEEEEEEeec--Ccc-cccccchhHHHHHHHHHHHHHhhcc
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--PDE-LRLGSGLKLFDFLAACISDFVHEYQ 128 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~i--p~~-~~~~~~~~lFd~ia~~i~~f~~~~~ 128 (200)
-+++||+|+|+.|+++++..|+. ....++.|++ |.. ....+.+++++-+.+++.+.+++.+
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~~-~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~ 69 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGNI-VSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAG 69 (498)
T ss_pred EEEEEecCCCceEEEEECCCCCE-EEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 37899999999999999987753 3334444542 221 1123568899999999999887644
No 37
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=93.68 E-value=0.31 Score=45.92 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=49.4
Q ss_pred eEEEecCCceeEEEEEE-EcCCceEEEEEEEee-------cC-------cccccccchhHHHHHHHHHHHHHhhccCCCc
Q psy15536 68 FLALDLGGTNFRVILMH-LKKGLVTDEIVKHYH-------IP-------DELRLGSGLKLFDFLAACISDFVHEYQVHDR 132 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~-l~g~~~~~~~~~~~~-------ip-------~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~ 132 (200)
+++||+|.|+.|+++++ ..|+. ....++.|+ .| ......+.+++++-+.+++++.+++.+...+
T Consensus 3 ~lgiD~GTss~Ka~l~d~~~G~~-~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~~~~~ 81 (536)
T TIGR01234 3 AIGVDFGTLSGRALAVDVATGEE-IATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELGVDPA 81 (536)
T ss_pred EEEEecCCCceEEEEEECCCCcE-eeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 78999999999999999 77753 334445554 23 2233445789999999999998877543221
Q ss_pred ceeeeEEeec
Q psy15536 133 VIPMGFTFSF 142 (200)
Q Consensus 133 ~l~lGftFSF 142 (200)
--.|+.||-
T Consensus 82 -~I~aI~~s~ 90 (536)
T TIGR01234 82 -DVVGIGVDF 90 (536)
T ss_pred -HEEEEEEec
Confidence 234555554
No 38
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=93.68 E-value=0.31 Score=46.05 Aligned_cols=108 Identities=13% Similarity=0.190 Sum_probs=61.2
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEeec--Cc-ccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeeccc
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--PD-ELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSFPM 144 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~i--p~-~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSFP~ 144 (200)
+++||+|+|+.|+++++..|+- ....++.++. |. .......+++++-+.+++++.+++.+... .--.|+.+|.+.
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~i-~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~-~~I~~Igis~~~ 79 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGDI-LALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDP-NSVKGIGFDATC 79 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCCE-EEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCh-hheEEEEecccc
Confidence 6899999999999999977652 2233333432 22 22334568899999999999887654322 112344444441
Q ss_pred ccccC-CceEEEeecccee-------cCCCCCccHHHHHHH
Q psy15536 145 HQRSL-DSGILVTWTKSFK-------SSGVEKEDVVKMLKD 177 (200)
Q Consensus 145 ~q~~~-~~~~li~wtKgf~-------~~~~~g~dv~~~L~~ 177 (200)
.--.+ .+|..+.|.+.++ ..|....+..+.|++
T Consensus 80 s~v~~D~~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~ 120 (541)
T TIGR01315 80 SLVVLTHDGEPLPVSKNGGADQNIILWMDHRALAEAEKINA 120 (541)
T ss_pred cceEEcCCCCeeecCCCCCcccceeEeecCcHHHHHHHHHH
Confidence 11111 3466665543322 234444455555543
No 39
>PLN02295 glycerol kinase
Probab=93.67 E-value=0.34 Score=45.32 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=43.6
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEeec--Cc-ccccccchhHHHHHHHHHHHHHhhccC
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--PD-ELRLGSGLKLFDFLAACISDFVHEYQV 129 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~i--p~-~~~~~~~~~lFd~ia~~i~~f~~~~~~ 129 (200)
+++||+|.|+.|+++++..|+- ....+..|++ |+ .......+++|+-+.++|.+.+++.+.
T Consensus 2 vlgID~GTts~Ka~l~d~~G~~-~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~ 65 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDARP-VASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAA 65 (512)
T ss_pred EEEEecCCCceEEEEECCCCCE-EEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999977753 3334444442 32 223345689999999999998877544
No 40
>PRK15027 xylulokinase; Provisional
Probab=93.45 E-value=0.38 Score=44.58 Aligned_cols=60 Identities=13% Similarity=0.252 Sum_probs=43.1
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEEEEEEeec--C-cccccccchhHHHHHHHHHHHHHhhc
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--P-DELRLGSGLKLFDFLAACISDFVHEY 127 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~i--p-~~~~~~~~~~lFd~ia~~i~~f~~~~ 127 (200)
.|++||+|.|+.|+++++..|+ .....++.|++ | +.....+.+++++.+.+++++.+++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~-vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~ 63 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGE-VVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH 63 (484)
T ss_pred CEEEEEecccceEEEEEcCCCC-EEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC
Confidence 3799999999999999997664 33334455543 2 22233456789999999999988764
No 41
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=93.25 E-value=0.48 Score=44.20 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=42.6
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEEEEEEeec--C-cccccccchhHHHHHHHHHHHHHhhcc
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--P-DELRLGSGLKLFDFLAACISDFVHEYQ 128 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~i--p-~~~~~~~~~~lFd~ia~~i~~f~~~~~ 128 (200)
-+++||+|.|+.|+++++..|+ .....+..+++ | +.....+.+++|+-+.+++.+.+++.+
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~-~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 66 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGN-VVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLR 66 (504)
T ss_pred EEEEEecCCCceEEEEECCCCC-EEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 3789999999999999998774 33334444442 2 122233567899999999999887654
No 42
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=92.90 E-value=0.48 Score=44.36 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=44.3
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCc---ccccccchhHHHHHHHHHHHHHhhc
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPD---ELRLGSGLKLFDFLAACISDFVHEY 127 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~---~~~~~~~~~lFd~ia~~i~~f~~~~ 127 (200)
.+++||+|.|+.|+.+++..+..........+.+.. .....+.++++..+.++|.+.+++.
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~ 68 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEES 68 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhc
Confidence 579999999999999999986333344443343321 1223456999999999999998875
No 43
>PRK10331 L-fuculokinase; Provisional
Probab=92.78 E-value=0.53 Score=43.52 Aligned_cols=60 Identities=20% Similarity=0.219 Sum_probs=41.1
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEEEEEEeec----Cc-ccccccchhHHHHHHHHHHHHHhhc
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI----PD-ELRLGSGLKLFDFLAACISDFVHEY 127 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~i----p~-~~~~~~~~~lFd~ia~~i~~f~~~~ 127 (200)
-+++||+|.|+.|+++++..|+- ....+..++. |. .......+++++-+.+++++.+++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~~-~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~ 67 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGKI-VARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL 67 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCcE-EEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC
Confidence 37899999999999999987752 3333333321 11 1223355789999999999988753
No 44
>PRK13318 pantothenate kinase; Reviewed
Probab=92.50 E-value=0.51 Score=40.23 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=16.2
Q ss_pred eEEEecCCceeEEEEEE
Q psy15536 68 FLALDLGGTNFRVILMH 84 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~ 84 (200)
+|+||+|||++|+++++
T Consensus 2 iL~IDIGnT~iK~al~d 18 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE 18 (258)
T ss_pred EEEEEECCCcEEEEEEE
Confidence 68999999999999998
No 45
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=92.45 E-value=0.5 Score=43.41 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=45.7
Q ss_pred EEEecCCceeEEEEEEEcCCceEEEEEEEeec---CcccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEee
Q psy15536 69 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHI---PDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFS 141 (200)
Q Consensus 69 ~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~i---p~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFS 141 (200)
++||+|.|++|++++++.|+- ....+..++. ++.....+.+++++.+.+++.+++++.+... .-..|+.+|
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i-~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~-~~I~gIgvs 74 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEV-IASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMG-QDIKGIGIS 74 (481)
T ss_pred CceeecCcceEEEEECCCCCE-EEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCc-ccEEEEEEe
Confidence 479999999999999987752 2222222321 1112234568899999999999998765432 224555555
No 46
>PRK13321 pantothenate kinase; Reviewed
Probab=92.02 E-value=0.45 Score=40.63 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=29.7
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHH
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISD 122 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~ 122 (200)
+++||+|||++|+++++ .+ + +. ..|++|-.... +.+++.+.+.+.+.+
T Consensus 2 iL~IDIGnT~ik~gl~~-~~--~--i~-~~~~~~T~~~~-~~~~~~~~l~~l~~~ 49 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GD--R--LL-RSFRLPTDKSR-TSDELGILLLSLFRH 49 (256)
T ss_pred EEEEEECCCeEEEEEEE-CC--E--EE-EEEEEecCCCC-CHHHHHHHHHHHHHH
Confidence 68999999999999988 33 2 21 13555543222 335666666655543
No 47
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=91.64 E-value=7.1 Score=34.83 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=35.9
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEeecC-cccccccchhHHHHHHHHHHHHHhh
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIP-DELRLGSGLKLFDFLAACISDFVHE 126 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip-~~~~~~~~~~lFd~ia~~i~~f~~~ 126 (200)
+.+||+|-+++|++..+..+++.+++..... .| .-+++|.-.+ .+-+++.|.+.+++
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~-~~~~gi~~G~I~d-~~~~~~~i~~al~~ 59 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGT-HPSRGIKKGVIND-IEAAVGSIQRAIEA 59 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEE-ecCCCccCcEEEc-HHHHHHHHHHHHHH
Confidence 5799999999999999987766555533322 23 2344554333 44456666665554
No 48
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=91.58 E-value=0.81 Score=42.26 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=40.5
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEeec----C-cccccccchhHHHHHHHHHHHHHhh
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI----P-DELRLGSGLKLFDFLAACISDFVHE 126 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~i----p-~~~~~~~~~~lFd~ia~~i~~f~~~ 126 (200)
+++||+|.|+.|+++++..|+ .....+..++. | +.....+.+++|+-+.+++++.+++
T Consensus 3 ilgiD~GTss~K~~l~d~~g~-~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~ 65 (465)
T TIGR02628 3 ILVLDCGATNLRAIAINRQGK-IVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE 65 (465)
T ss_pred EEEEecCCCcEEEEEEcCCCC-EEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999997664 23333333331 1 1122335678999999999998864
No 49
>PRK04123 ribulokinase; Provisional
Probab=91.34 E-value=1.2 Score=42.02 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=40.5
Q ss_pred ceEEEecCCceeEEEEEEE-cCCceEEEEEEEeec--------Cc-ccccccchhHHHHHHHHHHHHHhhcc
Q psy15536 67 QFLALDLGGTNFRVILMHL-KKGLVTDEIVKHYHI--------PD-ELRLGSGLKLFDFLAACISDFVHEYQ 128 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l-~g~~~~~~~~~~~~i--------p~-~~~~~~~~~lFd~ia~~i~~f~~~~~ 128 (200)
.+++||+|.|+.|+++++. .|+ .....+..|+. |. .......+++++-+.++|.+.+++.+
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~ 74 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGE-ELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAG 74 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCc-EeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcC
Confidence 4789999999999999995 664 22233334431 11 11222356788989999999887644
No 50
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=90.87 E-value=3.8 Score=35.94 Aligned_cols=101 Identities=11% Similarity=0.180 Sum_probs=60.3
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEE-EEEEeecCcccc-cccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeeccc
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDE-IVKHYHIPDELR-LGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSFPM 144 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~-~~~~~~ip~~~~-~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSFP~ 144 (200)
.+++||+|.+++|++.++-.++ .+++ .....++|.... .+.-.+ .+-+++.|.+.+++.+...+ -..+++|.
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~-~~~v~~~~~~~~p~~~i~~g~i~d-~~~~~~~l~~~~~~~~~~~k----~v~~alp~ 77 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGD-RYKLEHYAVEPLPAGIFTEGHIVE-YQAVAEALKELLSELGINTK----KAATAVPG 77 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCC-ceEEEEEEEEECCCCcccCCCccC-HHHHHHHHHHHHHHcCCCcc----eEEEEecC
Confidence 5799999999999988876554 3444 444567776543 332111 34566777777766543321 34667775
Q ss_pred ccccCCceEEEeeccceecCC-CCCccHHHHHHHHHHHc
Q psy15536 145 HQRSLDSGILVTWTKSFKSSG-VEKEDVVKMLKDAIHRR 182 (200)
Q Consensus 145 ~q~~~~~~~li~wtKgf~~~~-~~g~dv~~~L~~al~r~ 182 (200)
.+. + +|-+.++. +-.+++.+.+.-..+++
T Consensus 78 ~~~------~---~r~~~~p~~i~~~el~~~i~~e~~~~ 107 (348)
T TIGR01175 78 SAV------I---TKVIPVPAGLDERELEFAVYIEASHY 107 (348)
T ss_pred Cee------E---EEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 541 1 12355664 55667777776555554
No 51
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=88.53 E-value=1.9 Score=39.59 Aligned_cols=56 Identities=14% Similarity=0.032 Sum_probs=36.4
Q ss_pred EEEecCCceeEEEEEEEcCC-ceEEEEEEEeecCcc-c-----ccccchhHHHHHHHHHHHHHh
Q psy15536 69 LALDLGGTNFRVILMHLKKG-LVTDEIVKHYHIPDE-L-----RLGSGLKLFDFLAACISDFVH 125 (200)
Q Consensus 69 ~alDlGGTnlRv~~v~l~g~-~~~~~~~~~~~ip~~-~-----~~~~~~~lFd~ia~~i~~f~~ 125 (200)
+|||+|.|+.|++++...++ ++..+... ++.++- . .....+++++.+.+++++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEI-HRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEE-EeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 58999999999999999865 33332111 111111 1 112346899999999998765
No 52
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=87.92 E-value=4.2 Score=32.74 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=38.1
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhh
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHE 126 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~ 126 (200)
|.+||+|-++++++..++.+++.+++......-+.-++.|.-.+ .+-+++.|.+.+++
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s~gi~~G~I~d-~~~~~~~I~~ai~~ 58 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPSRGIRKGVIVD-IEAAARAIREAVEE 58 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCCccCcEEEC-HHHHHHHHHHHHHH
Confidence 47899999999999999987666666544433233455555333 45556666666554
No 53
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=85.53 E-value=2.9 Score=37.13 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=19.1
Q ss_pred cceEEEecCCceeEEEEEEEcCC
Q psy15536 66 GQFLALDLGGTNFRVILMHLKKG 88 (200)
Q Consensus 66 G~f~alDlGGTnlRv~~v~l~g~ 88 (200)
...|+=|+||||.|+++|+....
T Consensus 6 ~p~LvgDIGGTnaRfaLv~~a~~ 28 (320)
T COG0837 6 YPRLVGDIGGTNARFALVEIAPA 28 (320)
T ss_pred CceEEEecCCcceEEEEeccCCC
Confidence 35677799999999999988654
No 54
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=82.80 E-value=8.9 Score=32.87 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=36.3
Q ss_pred ccCccccceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHh
Q psy15536 60 PRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVH 125 (200)
Q Consensus 60 P~g~E~G~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~ 125 (200)
|.-+.++.+.+||+|-|++|+...+..++ . .........-++.|.-.+ ++-....|..+++
T Consensus 18 ~~~~~~~~~~~iDiGSssi~~vv~~~~~~-~---~~~~~~~~~~vr~G~i~d-i~~a~~~i~~~~~ 78 (267)
T PRK15080 18 PVATESPLKVGVDLGTANIVLAVLDEDGQ-P---VAGALEWADVVRDGIVVD-FIGAVTIVRRLKA 78 (267)
T ss_pred CCCCCCCEEEEEEccCceEEEEEEcCCCC-E---EEEEeccccccCCCEEee-HHHHHHHHHHHHH
Confidence 44456778999999999999988766443 1 111122222333333222 6666666766665
No 55
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=78.67 E-value=12 Score=31.68 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=37.7
Q ss_pred EEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccC
Q psy15536 69 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQV 129 (200)
Q Consensus 69 ~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~ 129 (200)
+.||-|||..|+++++..|+ +..+...-|.+......++...-|.+-+.+.+++.+.
T Consensus 1 lGIDgGgTkt~~vl~d~~g~----il~~~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~ 57 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN----ILGRGKGGGANYNSVGFEEAMENIKEAIEEALSQAGL 57 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE----EEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEeeChheeeeEEEeCCCC----EEEEEEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCC
Confidence 57999999999999998664 2233333444444333466677777777887776554
No 56
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.35 E-value=18 Score=32.64 Aligned_cols=121 Identities=12% Similarity=0.186 Sum_probs=78.0
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEE-EEEEeecCcccccccchhHHHHHHHHHHHHHhhccCCCc--------------
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDE-IVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDR-------------- 132 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~-~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~-------------- 132 (200)
-..||+|-+..+++-.+-.| ..+.+ +...-++|+.++....-.=.+-+++.|++.+++.+...+
T Consensus 12 ~vGIdI~~~sVKvvqLs~~g-~~~kLe~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k~aa~AVP~s~aitk 90 (354)
T COG4972 12 AVGIDIGSHSVKVVQLSRSG-NRYKLEKYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSKNAATAVPGSAAITK 90 (354)
T ss_pred eeeEeeccceEEEEEEcccC-CceeeeeeeecccCccccccCCcccHHHHHHHHHHHHHhcCcchhhhhhhcCccceeeE
Confidence 57899999999996555223 24555 334557898877655545577888888888877654210
Q ss_pred -----------------ceeeeEEeecccccccCCceEEEeeccc---eecC-CCCCccHHHHHHHHHHHcCCCCceEE
Q psy15536 133 -----------------VIPMGFTFSFPMHQRSLDSGILVTWTKS---FKSS-GVEKEDVVKMLKDAIHRRQDNHVEIV 190 (200)
Q Consensus 133 -----------------~l~lGftFSFP~~q~~~~~~~li~wtKg---f~~~-~~~g~dv~~~L~~al~r~~~~~v~v~ 190 (200)
....+.-++||.+.-+++=-.|-.-.-+ ..+- -.--+++++...++|+.-| +..+|+
T Consensus 91 ~i~vp~~lde~eL~~~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AG-l~~~vl 168 (354)
T COG4972 91 TIPVPDELDEKELEDQVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAG-LEPKVL 168 (354)
T ss_pred EeccCCcccHHHHHHHHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcC-CCceEE
Confidence 0235678999999888765544333222 1110 0123688999999999998 565554
No 57
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=75.96 E-value=9.8 Score=32.06 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=16.7
Q ss_pred eEEEecCCceeEEEEEEEcC
Q psy15536 68 FLALDLGGTNFRVILMHLKK 87 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g 87 (200)
+++||+|.|+.|+++++ .|
T Consensus 2 ~lGIDiGtts~K~vl~d-~g 20 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME-DG 20 (248)
T ss_pred EEEEEcChhheEEEEEc-CC
Confidence 57899999999999997 44
No 58
>PLN02669 xylulokinase
Probab=74.21 E-value=14 Score=35.21 Aligned_cols=57 Identities=12% Similarity=0.259 Sum_probs=35.4
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEEEEEEeec--Cc-----ccccccc---------hhHHHHHHHHHHHHH
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--PD-----ELRLGSG---------LKLFDFLAACISDFV 124 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~i--p~-----~~~~~~~---------~~lFd~ia~~i~~f~ 124 (200)
-||+||+|.|++|.++++..|+- +...+..|++ |. -....+. ..+++-+...+.+..
T Consensus 9 ~~LGiD~GT~s~Ka~l~d~~g~v-v~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~ 81 (556)
T PLN02669 9 LFLGFDSSTQSLKATVLDSNLRI-VASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA 81 (556)
T ss_pred eEEEEecccCCeEEEEEcCCCCE-EEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999977753 2333333431 21 1111111 145588888888865
No 59
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=71.96 E-value=18 Score=31.91 Aligned_cols=60 Identities=12% Similarity=0.217 Sum_probs=34.9
Q ss_pred EEecCCceeEEEEEEEcCCceEEE-EEEEeecCcccccccchhHHHHHHHHHHHHHhhccCC
Q psy15536 70 ALDLGGTNFRVILMHLKKGLVTDE-IVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVH 130 (200)
Q Consensus 70 alDlGGTnlRv~~v~l~g~~~~~~-~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~ 130 (200)
.||+|-..+|++.++-.+++ +.+ ..-..++|........-.=.+.+++.|.+.+++++.+
T Consensus 1 GiDiG~~siK~v~l~~~~~~-~~l~~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~~ 61 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNR-FQLEAFASIPLPPGAISDGEIVDPEALAEALKELLKENKIK 61 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT---EEEEEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT--
T ss_pred CeecCCCeEEEEEEEEcCCc-cEEEEEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 48999999999777775543 444 5566788887643222223456777777777776553
No 60
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=70.18 E-value=16 Score=34.86 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=66.8
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEEEE---EEeecCcccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeecc
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDEIV---KHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSFP 143 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~~~---~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSFP 143 (200)
-++++|+|--.-|+++++...+....... ..|.++......+..+.+.-+...|.+.+++-+... .--.|+.|++-
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~-~~V~gIGvDaT 82 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDP-ADVVGIGVDAT 82 (544)
T ss_pred EEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCCh-hHeeEEEEcce
Confidence 36899999999999999997322222222 233455555556789999999999999999876544 34467777776
Q ss_pred cccccCCc-eEEEeeccceecC
Q psy15536 144 MHQRSLDS-GILVTWTKSFKSS 164 (200)
Q Consensus 144 ~~q~~~~~-~~li~wtKgf~~~ 164 (200)
|.---+++ |.-+.+...|...
T Consensus 83 cSlvv~d~~g~pl~v~~~~~~~ 104 (544)
T COG1069 83 CSLVVIDRDGNPLAVLPEFPNN 104 (544)
T ss_pred eeeEEECCCCCeeccCCCCCCC
Confidence 66544433 4666666666654
No 61
>KOG2517|consensus
Probab=63.43 E-value=57 Score=31.13 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=56.8
Q ss_pred cceEEEecCCceeEEEEEEEcCCceEEEEEEEeec--C-cccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeec
Q psy15536 66 GQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--P-DELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSF 142 (200)
Q Consensus 66 G~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~i--p-~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSF 142 (200)
.-+++||.|-|.-|.++.+-.-+......++.... | +.....+.++++.-+.+||+.-.++-...+ .-..|.|=|=
T Consensus 6 ~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~-~~~~~~~~ig 84 (516)
T KOG2517|consen 6 PVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLN-IKVVGATCIG 84 (516)
T ss_pred ceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhcccc-ccccccEEEE
Confidence 35799999999999999984333333333332222 2 234445679999999999998776543211 1223333333
Q ss_pred ccccccCCceEEEeeccceecC
Q psy15536 143 PMHQRSLDSGILVTWTKSFKSS 164 (200)
Q Consensus 143 P~~q~~~~~~~li~wtKgf~~~ 164 (200)
=+.| +...+-|.|...-+
T Consensus 85 v~~q----r~~~v~w~~~tg~p 102 (516)
T KOG2517|consen 85 VVNQ----REGSVLWNKRTGEP 102 (516)
T ss_pred EEec----CCceEEeecCCCCc
Confidence 3444 34566777776544
No 62
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=62.09 E-value=23 Score=31.89 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=34.7
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEeecC-cccccccchhHHHHHH---HHHHHHHhhccC
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIP-DELRLGSGLKLFDFLA---ACISDFVHEYQV 129 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip-~~~~~~~~~~lFd~ia---~~i~~f~~~~~~ 129 (200)
.|+|+.|||+.|+++++-.+. +.++...-+ +++ +..+..-+.++ +.|.+++++++.
T Consensus 2 il~in~Gsts~k~alf~~~~~----~~~~~~~~~~~~~--~~~~~~~~q~~~r~~~i~~~l~~~~~ 61 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERP----LFEETLRHSVEEL--GRFKNVIDQFEFRKQVILQFLEEHGI 61 (351)
T ss_pred EEEEecCchhheEEEEeCCCc----eeeeeecCCHHHh--cccccHHHHHHHHHHHHHHHHHHcCC
Confidence 589999999999999776553 222212112 222 23345556666 778888887653
No 63
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=61.94 E-value=38 Score=30.92 Aligned_cols=59 Identities=8% Similarity=0.159 Sum_probs=36.8
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhh
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHE 126 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~ 126 (200)
-+.+||+|-|.+++++.++.+++.+++......-..-++.|.-.+ .+-.+++|.+-+++
T Consensus 9 ~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~gi~~G~I~d-~~~~~~aI~~av~~ 67 (420)
T PRK09472 9 LVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGMDKGGVND-LESVVKCVQRAIDQ 67 (420)
T ss_pred EEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCCCccCCEEEc-HHHHHHHHHHHHHH
Confidence 578999999999999888876665665443332234455554322 44455555555443
No 64
>PRK13410 molecular chaperone DnaK; Provisional
Probab=56.98 E-value=12 Score=36.68 Aligned_cols=19 Identities=42% Similarity=0.684 Sum_probs=17.1
Q ss_pred cceEEEecCCceeEEEEEE
Q psy15536 66 GQFLALDLGGTNFRVILMH 84 (200)
Q Consensus 66 G~f~alDlGGTnlRv~~v~ 84 (200)
|..++||||.||-.|++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVME 20 (668)
T ss_pred CcEEEEEeCCCcEEEEEEE
Confidence 5689999999999999876
No 65
>PRK13411 molecular chaperone DnaK; Provisional
Probab=55.50 E-value=37 Score=33.07 Aligned_cols=29 Identities=34% Similarity=0.604 Sum_probs=23.1
Q ss_pred ccceEEEecCCceeEEEEEEEcCCceEEEE
Q psy15536 65 QGQFLALDLGGTNFRVILMHLKKGLVTDEI 94 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~l~g~~~~~~~ 94 (200)
.+.++.+|+||.++-|.++++.++ .+++.
T Consensus 185 ~~~vlV~DlGgGT~dvsi~~~~~~-~~~V~ 213 (653)
T PRK13411 185 EQLILVFDLGGGTFDVSILQLGDG-VFEVK 213 (653)
T ss_pred CCEEEEEEcCCCeEEEEEEEEeCC-EEEEE
Confidence 567999999999999999999653 44443
No 66
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=54.82 E-value=11 Score=36.35 Aligned_cols=19 Identities=42% Similarity=0.698 Sum_probs=16.8
Q ss_pred cceEEEecCCceeEEEEEE
Q psy15536 66 GQFLALDLGGTNFRVILMH 84 (200)
Q Consensus 66 G~f~alDlGGTnlRv~~v~ 84 (200)
+..++||||.||.+++.++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVME 20 (627)
T ss_pred CcEEEEEeCcccEEEEEEE
Confidence 3579999999999999886
No 67
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=54.27 E-value=31 Score=32.60 Aligned_cols=102 Identities=20% Similarity=0.327 Sum_probs=71.9
Q ss_pred cceEEEecCCceeEEEEEEEcCCceEEE----EEEEeecCcccccccchhHHHHHHHHHHHHHhhccCCC-cceeeeEEe
Q psy15536 66 GQFLALDLGGTNFRVILMHLKKGLVTDE----IVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHD-RVIPMGFTF 140 (200)
Q Consensus 66 G~f~alDlGGTnlRv~~v~l~g~~~~~~----~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~-~~l~lGftF 140 (200)
.-.+|||-|-|+-|..+..-.|+-. .. ..+.|+-|.-+. ....+++.-...++.+.+.+.++.. +.--+|+|
T Consensus 5 ~yIlAiDqGTTssRaivfd~~g~iv-a~~q~e~~Q~yP~~GWVE-hDp~eIw~~~~~~l~~a~~~~~i~~~~iaaIGIT- 81 (499)
T COG0554 5 KYILAIDQGTTSSRAIVFDEDGNIV-AIAQREFTQIYPQPGWVE-HDPLEIWASVRSVLKEALAKAGIKPGEIAAIGIT- 81 (499)
T ss_pred cEEEEEecCCcceeEEEECCCCCch-hhhhhhhhhhCCCCCccc-cCHHHHHHHHHHHHHHHHHHcCCCccceEEEEee-
Confidence 4578999999999999887776532 22 223455565554 4679999999999999888776543 45568887
Q ss_pred ecccccccCCceEEEeeccc--------eecCCCCCccHHHHHHHH
Q psy15536 141 SFPMHQRSLDSGILVTWTKS--------FKSSGVEKEDVVKMLKDA 178 (200)
Q Consensus 141 SFP~~q~~~~~~~li~wtKg--------f~~~~~~g~dv~~~L~~a 178 (200)
+| +-+.+-|.|. +-..+-...++++.|.+.
T Consensus 82 ----NQ----RETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~ 119 (499)
T COG0554 82 ----NQ----RETTVVWDKETGKPIYNAIVWQDRRTADICEELKAD 119 (499)
T ss_pred ----cc----ceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhc
Confidence 34 7889999983 222344566777777665
No 68
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=50.89 E-value=13 Score=35.83 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=16.9
Q ss_pred ccceEEEecCCceeEEEEEE
Q psy15536 65 QGQFLALDLGGTNFRVILMH 84 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~ 84 (200)
+...++||||.||-.|+.++
T Consensus 18 ~~~~iGIDlGTt~s~va~~~ 37 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVR 37 (616)
T ss_pred CCeEEEEEeccccEEEEEEE
Confidence 33579999999999999874
No 69
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=50.56 E-value=37 Score=31.99 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=33.9
Q ss_pred cccceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCccccccc--chhHHHHHHHHHH
Q psy15536 64 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGS--GLKLFDFLAACIS 121 (200)
Q Consensus 64 E~G~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~--~~~lFd~ia~~i~ 121 (200)
..+.++.+|+||.++-+.+++...+ .+++....+. .++ -|. ...|++|+.+.+.
T Consensus 186 ~~~~vlv~D~Gggt~dvs~~~~~~~-~~~v~~~~~~--~~l-GG~~~D~~l~~~~~~~~~ 241 (602)
T PF00012_consen 186 KGKTVLVVDFGGGTFDVSVVEFSNG-QFEVLATAGD--NNL-GGRDFDEALAEYLLEKFK 241 (602)
T ss_dssp SEEEEEEEEEESSEEEEEEEEEETT-EEEEEEEEEE--TTC-SHHHHHHHHHHHHHHHHH
T ss_pred cccceeccccccceEeeeehhcccc-cccccccccc--ccc-ccceecceeecccccccc
Confidence 4668999999999999999999754 4444332221 111 111 2566666666554
No 70
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=50.06 E-value=16 Score=32.34 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=19.7
Q ss_pred ccceEEEecCCceeEEEEEEEcC
Q psy15536 65 QGQFLALDLGGTNFRVILMHLKK 87 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~l~g 87 (200)
...|+++|=|.||||+-+++=+|
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~dg 26 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGDG 26 (306)
T ss_pred CceEEEEecCCccEEEEEEcCCc
Confidence 46799999999999998877655
No 71
>PF07549 Sec_GG: SecD/SecF GG Motif; InterPro: IPR022646 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents a GG-containing domain found in the N-terminal region of prokaryotic SecD and SecF protein export membrane proteins. It is found in association with PF02355 from PFAM. SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=50.00 E-value=9 Score=22.03 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=9.4
Q ss_pred ceEEEec-CCceeEE
Q psy15536 67 QFLALDL-GGTNFRV 80 (200)
Q Consensus 67 ~f~alDl-GGTnlRv 80 (200)
--+.||| ||+.+.+
T Consensus 9 ln~GlDf~GG~~i~~ 23 (31)
T PF07549_consen 9 LNLGLDFTGGTSITL 23 (31)
T ss_dssp S-EECCCC-EEEEEE
T ss_pred ccccEEcCCCeEEEE
Confidence 3478999 9988765
No 72
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=49.69 E-value=58 Score=31.08 Aligned_cols=29 Identities=31% Similarity=0.666 Sum_probs=22.9
Q ss_pred ccceEEEecCCceeEEEEEEEcCCceEEEE
Q psy15536 65 QGQFLALDLGGTNFRVILMHLKKGLVTDEI 94 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~l~g~~~~~~~ 94 (200)
...++.+|+||.++-+.++++.+. .+++.
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~~~~~-~~~v~ 210 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILEIGDG-VFEVL 210 (595)
T ss_pred CcEEEEEECCCCeEEEEEEEecCC-eEEEE
Confidence 467899999999999999999653 34443
No 73
>CHL00094 dnaK heat shock protein 70
Probab=48.77 E-value=58 Score=31.40 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=22.6
Q ss_pred ccceEEEecCCceeEEEEEEEcCCceEEEE
Q psy15536 65 QGQFLALDLGGTNFRVILMHLKKGLVTDEI 94 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~l~g~~~~~~~ 94 (200)
...++.+|+||.++-|.++++.+ +.+++.
T Consensus 186 ~~~vlV~DlGgGT~DvSv~~~~~-~~~~vl 214 (621)
T CHL00094 186 NETILVFDLGGGTFDVSILEVGD-GVFEVL 214 (621)
T ss_pred CCEEEEEEcCCCeEEEEEEEEcC-CEEEEE
Confidence 35689999999999999999965 344443
No 74
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=48.19 E-value=51 Score=31.74 Aligned_cols=29 Identities=31% Similarity=0.643 Sum_probs=22.8
Q ss_pred ccceEEEecCCceeEEEEEEEcCCceEEEE
Q psy15536 65 QGQFLALDLGGTNFRVILMHLKKGLVTDEI 94 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~l~g~~~~~~~ 94 (200)
...++.+|+||.++-+.++++.+. .+++.
T Consensus 184 ~~~vlV~D~GggT~dvsv~~~~~~-~~~vl 212 (627)
T PRK00290 184 DEKILVYDLGGGTFDVSILEIGDG-VFEVL 212 (627)
T ss_pred CCEEEEEECCCCeEEEEEEEEeCC-eEEEE
Confidence 366899999999999999999653 44443
No 75
>PRK13410 molecular chaperone DnaK; Provisional
Probab=48.11 E-value=59 Score=31.85 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=23.0
Q ss_pred ccceEEEecCCceeEEEEEEEcCCceEEEE
Q psy15536 65 QGQFLALDLGGTNFRVILMHLKKGLVTDEI 94 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~l~g~~~~~~~ 94 (200)
.+.++.+|+||.++-|.++++.++ .+++.
T Consensus 186 ~~~vlV~DlGgGT~Dvsv~~~~~g-~~~V~ 214 (668)
T PRK13410 186 SQTVLVFDLGGGTFDVSLLEVGNG-VFEVK 214 (668)
T ss_pred CCEEEEEECCCCeEEEEEEEEcCC-eEEEE
Confidence 457899999999999999999653 44443
No 76
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=47.66 E-value=58 Score=28.48 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=16.1
Q ss_pred eEEEecCCceeEEEEEEEcC
Q psy15536 68 FLALDLGGTNFRVILMHLKK 87 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g 87 (200)
.++||+|||..+++...-++
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~ 21 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKG 21 (279)
T ss_pred eEEEEeCcceEEEEEEcCCC
Confidence 57899999999998865434
No 77
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=47.22 E-value=1.1e+02 Score=23.99 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.3
Q ss_pred ceEEEecCCceeEEEEEEEcCC
Q psy15536 67 QFLALDLGGTNFRVILMHLKKG 88 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~ 88 (200)
+.++||.|-+|+=.++++..++
T Consensus 1 rILGIDPGl~~~G~av~~~~~~ 22 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGR 22 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCC
Confidence 4689999999999999998774
No 78
>PRK13320 pantothenate kinase; Reviewed
Probab=46.78 E-value=58 Score=27.67 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=16.1
Q ss_pred eEEEecCCceeEEEEEE
Q psy15536 68 FLALDLGGTNFRVILMH 84 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~ 84 (200)
+|+||+|-|+++.++++
T Consensus 4 ~L~iDiGNT~ik~~~~~ 20 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFE 20 (244)
T ss_pred EEEEEeCCCcEEEEEEE
Confidence 79999999999999988
No 79
>CHL00094 dnaK heat shock protein 70
Probab=45.22 E-value=22 Score=34.26 Aligned_cols=19 Identities=42% Similarity=0.669 Sum_probs=16.7
Q ss_pred cceEEEecCCceeEEEEEE
Q psy15536 66 GQFLALDLGGTNFRVILMH 84 (200)
Q Consensus 66 G~f~alDlGGTnlRv~~v~ 84 (200)
+..++||||.||-.++.++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVME 20 (621)
T ss_pred CceEEEEeCcccEEEEEEE
Confidence 3578999999999999875
No 80
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=45.06 E-value=70 Score=31.32 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=22.9
Q ss_pred ccceEEEecCCceeEEEEEEEcCCceEEEE
Q psy15536 65 QGQFLALDLGGTNFRVILMHLKKGLVTDEI 94 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~l~g~~~~~~~ 94 (200)
.+.++.+||||.+|-|.++++.++ .+++.
T Consensus 211 ~~~vlV~DlGGGT~DvSil~~~~g-~~~V~ 239 (657)
T PTZ00186 211 DSLIAVYDLGGGTFDISVLEIAGG-VFEVK 239 (657)
T ss_pred CCEEEEEECCCCeEEEEEEEEeCC-EEEEE
Confidence 457899999999999999999653 44443
No 81
>PLN03184 chloroplast Hsp70; Provisional
Probab=44.94 E-value=64 Score=31.60 Aligned_cols=29 Identities=31% Similarity=0.623 Sum_probs=22.7
Q ss_pred ccceEEEecCCceeEEEEEEEcCCceEEEE
Q psy15536 65 QGQFLALDLGGTNFRVILMHLKKGLVTDEI 94 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~l~g~~~~~~~ 94 (200)
...++.+|+||.++-|.++++.+. .+++.
T Consensus 223 ~~~vlV~DlGgGT~DvSi~~~~~~-~~eVl 251 (673)
T PLN03184 223 NETILVFDLGGGTFDVSVLEVGDG-VFEVL 251 (673)
T ss_pred CCEEEEEECCCCeEEEEEEEecCC-EEEEE
Confidence 456899999999999999999653 44443
No 82
>PRK13324 pantothenate kinase; Reviewed
Probab=44.72 E-value=79 Score=27.20 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=29.8
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHH
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACI 120 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i 120 (200)
.|+||+|=||.+.++.+ +++ ....|+++......+.++++-++...+
T Consensus 2 iL~iDiGNT~ik~gl~~--~~~----~~~~~r~~t~~~~~t~de~~~~l~~~~ 48 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD--GDR----IVSQIRYATSSVDSTSDQMGVFLRQAL 48 (258)
T ss_pred EEEEEeCCCceEEEEEE--CCE----EEEEEEEecCccccchHHHHHHHHHHH
Confidence 68999999999999987 322 112466655222335566666655544
No 83
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=44.60 E-value=66 Score=31.30 Aligned_cols=29 Identities=31% Similarity=0.614 Sum_probs=22.9
Q ss_pred ccceEEEecCCceeEEEEEEEcCCceEEEE
Q psy15536 65 QGQFLALDLGGTNFRVILMHLKKGLVTDEI 94 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~l~g~~~~~~~ 94 (200)
...++.+|+||.++-|.++++.++ .+++.
T Consensus 193 ~~~vlv~D~GggT~dvsv~~~~~~-~~~v~ 221 (653)
T PTZ00009 193 EKNVLIFDLGGGTFDVSLLTIEDG-IFEVK 221 (653)
T ss_pred CCEEEEEECCCCeEEEEEEEEeCC-eEEEE
Confidence 456899999999999999999654 34443
No 84
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=43.56 E-value=20 Score=31.95 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.6
Q ss_pred ccceEEEecCCceeEEEEEE
Q psy15536 65 QGQFLALDLGGTNFRVILMH 84 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~ 84 (200)
.+..+.+|+|||+..++.|+
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCCEEEEEcCccceeeEEec
Confidence 66789999999999998864
No 85
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=43.25 E-value=71 Score=25.17 Aligned_cols=58 Identities=21% Similarity=0.438 Sum_probs=38.9
Q ss_pred eEEEecCCceeEEEEEEEcCCc--eEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccC
Q psy15536 68 FLALDLGGTNFRVILMHLKKGL--VTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQV 129 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~--~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~ 129 (200)
.+++++=|+..++|++.+.++. .++...+++.+++.-.. +++=+|... ++.++++++.
T Consensus 3 vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~l~~~~~~---~~vr~Fq~~-f~kl~~dy~V 62 (138)
T PF11215_consen 3 VCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFSLSDDNST---EEVRKFQFT-FAKLMEDYKV 62 (138)
T ss_pred EEEEEEecCeEEEEEEecCCCceECCccceeEEEcCCCccH---HHHHHHHHH-HHHHHHHcCC
Confidence 4678899999999999987653 24557788888876444 444444333 5666666654
No 86
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=42.40 E-value=98 Score=27.51 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=42.0
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHHHhhccC
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQV 129 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~ 129 (200)
-||.||=|||.-|..+-+..|+ +.-+-..=|-++....-++=+.-|.+-|.+.+.+.+.
T Consensus 6 ~~lGVDGGGTkt~a~l~~~~g~----vlg~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~ 64 (301)
T COG2971 6 YFLGVDGGGTKTRAVLADEDGN----VLGRGKSGPANIQLVGKEEAVRNIKDAIREALDEAGL 64 (301)
T ss_pred EEEEEccCCcceEEEEEcCCCc----EEEEeccCCceecccchHHHHHHHHHHHHHHHHhcCC
Confidence 5899999999999988875543 2333334466666655577788888888888866543
No 87
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=42.38 E-value=1.4e+02 Score=25.81 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=34.0
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEE--EEEEeecCccc-cccc-chhHHHHHHHHHHHHH
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDE--IVKHYHIPDEL-RLGS-GLKLFDFLAACISDFV 124 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~--~~~~~~ip~~~-~~~~-~~~lFd~ia~~i~~f~ 124 (200)
|-+||+|-.++|+.+.++.++..-.+ ......+.+.+ .++. .++=.+-+.+++.+|.
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~ 62 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFA 62 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 56899999999999999864321112 23334555443 2222 2455556666666664
No 88
>PRK10854 exopolyphosphatase; Provisional
Probab=41.93 E-value=1.6e+02 Score=27.74 Aligned_cols=57 Identities=23% Similarity=0.439 Sum_probs=37.3
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEE---EEEEeecCcccc-ccc-chhHHHHHHHHHHHHH
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDE---IVKHYHIPDELR-LGS-GLKLFDFLAACISDFV 124 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~---~~~~~~ip~~~~-~~~-~~~lFd~ia~~i~~f~ 124 (200)
.|-+||+|-.++|+.+++..++ .+++ ..+...+-+.+- ++. .++=.+-..+++..|.
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~-~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~ 73 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDG-AMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFA 73 (513)
T ss_pred EEEEEEeccchheEEEEEecCC-cEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHH
Confidence 5789999999999999998754 3333 223344544432 222 3577777777777773
No 89
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=41.82 E-value=30 Score=24.31 Aligned_cols=21 Identities=19% Similarity=0.664 Sum_probs=17.2
Q ss_pred cceEEEecCCceeEEEE-EEEc
Q psy15536 66 GQFLALDLGGTNFRVIL-MHLK 86 (200)
Q Consensus 66 G~f~alDlGGTnlRv~~-v~l~ 86 (200)
+.+.+.|+||.++|+.. |...
T Consensus 36 ~~~~vFnI~GN~yRlI~~I~f~ 57 (76)
T PF09907_consen 36 NNRVVFNIGGNKYRLIAKIDFE 57 (76)
T ss_pred CCEEEEEcCCCcEEEEEEEEeC
Confidence 68999999999999864 5553
No 90
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=41.67 E-value=30 Score=33.60 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.4
Q ss_pred cceEEEecCCceeEEEEEE
Q psy15536 66 GQFLALDLGGTNFRVILMH 84 (200)
Q Consensus 66 G~f~alDlGGTnlRv~~v~ 84 (200)
+..++||||.||-.|++++
T Consensus 4 ~~~iGIDlGTt~s~va~~~ 22 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWK 22 (653)
T ss_pred ccEEEEEeCcccEEEEEEe
Confidence 4579999999999999875
No 91
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=41.33 E-value=35 Score=31.58 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=17.2
Q ss_pred EEEecCCceeEEEEEEEcCCce
Q psy15536 69 LALDLGGTNFRVILMHLKKGLV 90 (200)
Q Consensus 69 ~alDlGGTnlRv~~v~l~g~~~ 90 (200)
+|+|+|-|+++..+++|..+..
T Consensus 4 iAvDiGTTti~~~L~dl~~G~~ 25 (412)
T PF14574_consen 4 IAVDIGTTTIAAYLVDLETGEV 25 (412)
T ss_dssp EEEEE-SSEEEEEEEETTT--E
T ss_pred EEEEcchhheeeEEEECCCCCE
Confidence 6999999999999999975543
No 92
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=41.27 E-value=1e+02 Score=26.12 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=30.1
Q ss_pred EEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHH
Q psy15536 69 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACIS 121 (200)
Q Consensus 69 ~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~ 121 (200)
|++|+|=||+.+++.+ ++ + +. ..|++|-+... +.+++..++...+.
T Consensus 2 L~iDiGNT~i~~g~~~--~~-~--~~-~~~r~~t~~~~-t~de~~~~l~~~~~ 47 (243)
T TIGR00671 2 LLIDVGNTRIVFALNS--GN-K--VY-QFWRLATNLMK-TYDEHSEFLKELFG 47 (243)
T ss_pred EEEEECCCcEEEEEEE--CC-E--EE-EEEEecCCCcc-ChHHHHHHHHHHHH
Confidence 7899999999999876 33 2 22 24777755543 55666665555443
No 93
>KOG1794|consensus
Probab=40.63 E-value=2.5e+02 Score=25.19 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=59.1
Q ss_pred cceEEEecCCceeEEEEEEEcCCceEE---EEEEEeecCcccccccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeec
Q psy15536 66 GQFLALDLGGTNFRVILMHLKKGLVTD---EIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSF 142 (200)
Q Consensus 66 G~f~alDlGGTnlRv~~v~l~g~~~~~---~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSF 142 (200)
|-|..+|=|+|.-|+.+|.=.+..-.+ .....|.|+. +.--+-|++.|.+-..+.+...+.
T Consensus 3 ~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh~~ig~-------~~~~~rie~~i~~A~~k~g~d~~~--------- 66 (336)
T KOG1794|consen 3 DFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNHWLIGS-------TTCASRIEDMIREAKEKAGWDKKG--------- 66 (336)
T ss_pred ceeEeecCCcceeEEEEECCCCCEeeEeeccccccccCCc-------hHHHHHHHHHHHHHHhhcCCCccC---------
Confidence 568889999999999998754432111 1234455553 344455555555544443332211
Q ss_pred ccccccCCceEEEeeccceecCCCCCccHHHHHHHHHHHcCCCC-ceEEEEEccCceeC
Q psy15536 143 PMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNH-VEIVCVLNDTTGTY 200 (200)
Q Consensus 143 P~~q~~~~~~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~~~~-v~v~aivNDTVatL 200 (200)
| |.+- |...+++.-.|-++.|.+-|+.+. +. .+=..|.||++++|
T Consensus 67 ~----------lr~l--gL~lSg~d~e~~~~~lv~~~R~~f-ps~ae~~~v~sDa~~sl 112 (336)
T KOG1794|consen 67 P----------LRSL--GLGLSGTDQEDKNRKLVTEFRDKF-PSVAENFYVTSDADGSL 112 (336)
T ss_pred c----------ccee--eeecccCCchhHHHHHHHHHHHhc-cchhheeeeehhHHHHH
Confidence 1 1111 223344444566666777776664 33 34478999998865
No 94
>PLN03184 chloroplast Hsp70; Provisional
Probab=40.54 E-value=34 Score=33.47 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=16.7
Q ss_pred cceEEEecCCceeEEEEEE
Q psy15536 66 GQFLALDLGGTNFRVILMH 84 (200)
Q Consensus 66 G~f~alDlGGTnlRv~~v~ 84 (200)
+..++||||.||-.|++++
T Consensus 39 ~~viGIDlGTt~s~va~~~ 57 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAME 57 (673)
T ss_pred CCEEEEEeCcCcEEEEEEE
Confidence 3689999999999999875
No 95
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=38.70 E-value=54 Score=31.42 Aligned_cols=33 Identities=36% Similarity=0.606 Sum_probs=24.4
Q ss_pred EEEecCCceeEEEEEEEcCCceEEE-EEEEeecC
Q psy15536 69 LALDLGGTNFRVILMHLKKGLVTDE-IVKHYHIP 101 (200)
Q Consensus 69 ~alDlGGTnlRv~~v~l~g~~~~~~-~~~~~~ip 101 (200)
+|+|+|-|.+|..+|+|+.+..... ....-+||
T Consensus 167 vAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~ 200 (614)
T COG3894 167 VAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLP 200 (614)
T ss_pred eEEecccceeeeEEEeccCCcEEEeeeccCCCCC
Confidence 7999999999999999987654433 33334454
No 96
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=38.53 E-value=30 Score=30.12 Aligned_cols=19 Identities=26% Similarity=0.578 Sum_probs=14.8
Q ss_pred cceEEEecCCceeEEEEEE
Q psy15536 66 GQFLALDLGGTNFRVILMH 84 (200)
Q Consensus 66 G~f~alDlGGTnlRv~~v~ 84 (200)
...+.+|+|||..-++++.
T Consensus 77 ~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 77 ENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp SSEEEEEE-SS-EEEEEEE
T ss_pred CCEEEEeCCCCEEEEEEEE
Confidence 3589999999999999985
No 97
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=37.65 E-value=2e+02 Score=22.44 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=28.8
Q ss_pred eEEEecCCceeEEEEEEEcCCceEEEEEEEeecCccccc-ccchhHHHHHHHHHHHH
Q psy15536 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRL-GSGLKLFDFLAACISDF 123 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~-~~~~~lFd~ia~~i~~f 123 (200)
.|.||-|-++.-.++++..++.-.-+..-..+.+..... ..-.++++++.+.|.+|
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~I~t~~~~~~~~Rl~~I~~~l~~li~~~ 57 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGTIKTSSKDSLPERLKEIYEELEELIEEY 57 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE---S--HHHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeCeEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 378999999999999999665422223333333332111 11245566655555554
No 98
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=36.73 E-value=38 Score=33.06 Aligned_cols=19 Identities=42% Similarity=0.688 Sum_probs=17.0
Q ss_pred cceEEEecCCceeEEEEEE
Q psy15536 66 GQFLALDLGGTNFRVILMH 84 (200)
Q Consensus 66 G~f~alDlGGTnlRv~~v~ 84 (200)
|..++||||.||-.|++++
T Consensus 41 ~~viGIDlGTt~s~va~~~ 59 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIME 59 (663)
T ss_pred CcEEEEEECcccEEEEEEe
Confidence 5689999999999999875
No 99
>KOG1794|consensus
Probab=35.80 E-value=32 Score=30.72 Aligned_cols=32 Identities=34% Similarity=0.414 Sum_probs=24.2
Q ss_pred eeeeccHHHhhhccccCccceEEEEeeccccee
Q psy15536 5 YQMDHLRGTLLQGASLDHKTAIGLILGTGSNAC 37 (200)
Q Consensus 5 ~~~ndtvgtlla~~~~~~~~~igli~gtg~Na~ 37 (200)
++.||+.+++.++..- .+-=+-||-|||+|+-
T Consensus 103 ~v~sDa~~sl~a~t~g-~~~GiVLiaGTgs~cr 134 (336)
T KOG1794|consen 103 YVTSDADGSLAAATPG-GEGGIVLIAGTGSNCR 134 (336)
T ss_pred eeehhHHHHHhhcCCC-CCCcEEEEecCCceeE
Confidence 6889999999886542 2445678999999974
No 100
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=35.76 E-value=2.5e+02 Score=24.22 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=22.1
Q ss_pred eEEEeeccceecCCCCCccHHHHHHHHHHHcC
Q psy15536 152 GILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQ 183 (200)
Q Consensus 152 ~~li~wtKgf~~~~~~g~dv~~~L~~al~r~~ 183 (200)
+....+.-.++.+.-+|.|-..-+-.|.+..+
T Consensus 90 ~~~~g~~~~~~~p~elG~DR~~n~vaA~~~~~ 121 (251)
T COG1521 90 KQLLGIRVLYDNPEELGADRIANAVAAYHKYG 121 (251)
T ss_pred hhccCCcccCCChhhhcHHHHHHHHHHHHHcC
Confidence 33444444455666789999888888888776
No 101
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=35.23 E-value=33 Score=33.56 Aligned_cols=20 Identities=40% Similarity=0.529 Sum_probs=17.2
Q ss_pred ccceEEEecCCceeEEEEEE
Q psy15536 65 QGQFLALDLGGTNFRVILMH 84 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~ 84 (200)
.+..++||||-||-.|+.++
T Consensus 26 ~~~viGIDLGTTnS~vA~~~ 45 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMD 45 (657)
T ss_pred cceEEEEEeCcCeEEEEEEe
Confidence 34689999999999999875
No 102
>PRK13411 molecular chaperone DnaK; Provisional
Probab=35.04 E-value=36 Score=33.14 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=16.6
Q ss_pred cceEEEecCCceeEEEEEE
Q psy15536 66 GQFLALDLGGTNFRVILMH 84 (200)
Q Consensus 66 G~f~alDlGGTnlRv~~v~ 84 (200)
+..++||||.||-.|++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLE 20 (653)
T ss_pred CcEEEEEeCcccEEEEEEE
Confidence 3579999999999999875
No 103
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=35.02 E-value=2e+02 Score=22.95 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=33.3
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCccc-ccccchhHHHHHHHHHHHH
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDEL-RLGSGLKLFDFLAACISDF 123 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~-~~~~~~~lFd~ia~~i~~f 123 (200)
+.|.||-|-++.=.++++..++...-+..-..+.+... ....-.++|++|.+.|.+|
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~~~~~~~~G~i~t~~~~~~~~Rl~~I~~~l~~~i~~~ 60 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGRRLSYVASGVIRTPSDLDLPERLKQIYDGLSELIDEY 60 (164)
T ss_pred EEEEEccccCceeEEEEEecCCeEEEEEeeEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999887643211233333444321 1112356666666666554
No 104
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=34.26 E-value=93 Score=30.39 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=21.6
Q ss_pred cceEEEecCCceeEEEEEEEcCCceEEE
Q psy15536 66 GQFLALDLGGTNFRVILMHLKKGLVTDE 93 (200)
Q Consensus 66 G~f~alDlGGTnlRv~~v~l~g~~~~~~ 93 (200)
..++.+|+||.++-|.++++.++ .+++
T Consensus 226 ~~vlV~DlGgGT~DvSv~~~~~g-~~~v 252 (663)
T PTZ00400 226 KTIAVYDLGGGTFDISILEILGG-VFEV 252 (663)
T ss_pred cEEEEEeCCCCeEEEEEEEecCC-eeEE
Confidence 46899999999999999998653 3444
No 105
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=32.84 E-value=70 Score=27.98 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=28.4
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHHHHHHH
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 123 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f 123 (200)
.-+|||+|||=-+|..-.. .-.+..+.+.++. .-+++.+|++.-|.+-
T Consensus 19 ~~vaiDiGGtLaKvv~sp~------~snrl~F~t~eT~---kId~~ve~l~~li~~h 66 (342)
T COG5146 19 MKVAIDIGGTLAKVVQSPS------QSNRLTFKTEETK---KIDQVVEWLNNLIQQH 66 (342)
T ss_pred EEEEEecCceeeeeeeCcc------cccceeeehHhhh---hHHHHHHHHHHHHHHH
Confidence 3489999999888855111 1123334444433 2377788887766554
No 106
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=30.52 E-value=51 Score=24.52 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=16.3
Q ss_pred eEEEecCCceeEEEEEEEcCC
Q psy15536 68 FLALDLGGTNFRVILMHLKKG 88 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g~ 88 (200)
+.+||+|++..++++.+....
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~ 21 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD 21 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE
T ss_pred CEEEEcCCCcEEEEEEEeCCC
Confidence 468999999999999887443
No 107
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=30.51 E-value=1.8e+02 Score=28.07 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=21.1
Q ss_pred cccceEEEecCCceeEEEEEEEc
Q psy15536 64 EQGQFLALDLGGTNFRVILMHLK 86 (200)
Q Consensus 64 E~G~f~alDlGGTnlRv~~v~l~ 86 (200)
+.+.+++.||||-+|-+-+|++.
T Consensus 170 ~~~~vlV~DlGGGTfDvSll~~~ 192 (579)
T COG0443 170 KEKTVLVYDLGGGTFDVSLLEIG 192 (579)
T ss_pred CCcEEEEEEcCCCCEEEEEEEEc
Confidence 56689999999999999999998
No 108
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=28.02 E-value=3e+02 Score=25.84 Aligned_cols=57 Identities=18% Similarity=0.337 Sum_probs=36.6
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEE---EEEEeecCccc-cccc-chhHHHHHHHHHHHHH
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDE---IVKHYHIPDEL-RLGS-GLKLFDFLAACISDFV 124 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~---~~~~~~ip~~~-~~~~-~~~lFd~ia~~i~~f~ 124 (200)
.+-+||+|-..+|+.+++..++ .++. ..+...+.+.+ .+|. .++=.+-..+++..|.
T Consensus 7 ~~A~IDIGSNSirL~I~~~~~~-~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~ 68 (496)
T PRK11031 7 LYAAIDLGSNSFHMLVVREVAG-SIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFA 68 (496)
T ss_pred EEEEEEccccceeEEEEEecCC-ceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHH
Confidence 4779999999999999998653 3332 23344554433 2222 3566777777777764
No 109
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=27.50 E-value=33 Score=24.83 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=9.8
Q ss_pred eeeeEEeecccc
Q psy15536 134 IPMGFTFSFPMH 145 (200)
Q Consensus 134 l~lGftFSFP~~ 145 (200)
-.|+||++||=.
T Consensus 5 ~~lafcy~~P~v 16 (86)
T PHA02858 5 SDLAFCYVFPNI 16 (86)
T ss_pred ceeEEEEecCCC
Confidence 469999999943
No 110
>PRK13326 pantothenate kinase; Reviewed
Probab=26.11 E-value=1.9e+02 Score=24.91 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=28.4
Q ss_pred ceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHH
Q psy15536 67 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAA 118 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~ 118 (200)
..|+||+|=||.++++.+ +++ +. ..|+++.+. ..+.++++.++..
T Consensus 7 ~~L~IDiGNT~ik~glf~--~~~---l~-~~~r~~t~~-~~t~de~~~~l~~ 51 (262)
T PRK13326 7 SQLIIDIGNTSISFALYK--DNK---MQ-IFCKLKTKL-DLSFDELYSFLKE 51 (262)
T ss_pred EEEEEEeCCCeEEEEEEE--CCE---EE-EEEEeccCC-CCCHHHHHHHHhc
Confidence 479999999999999987 332 11 246666433 2245666655544
No 111
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=25.64 E-value=73 Score=22.35 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=16.8
Q ss_pred CccHHHHHHHHHHHcCCCCce
Q psy15536 168 KEDVVKMLKDAIHRRQDNHVE 188 (200)
Q Consensus 168 g~dv~~~L~~al~r~~~~~v~ 188 (200)
|..+.+.|.++++++| ++..
T Consensus 19 G~ti~d~L~kllekRg-l~~~ 38 (73)
T cd01817 19 GESIRDLLSGLCEKRG-INYA 38 (73)
T ss_pred CCCHHHHHHHHHHHcC-CChh
Confidence 7889999999999998 5543
No 112
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=25.42 E-value=80 Score=30.48 Aligned_cols=25 Identities=36% Similarity=0.868 Sum_probs=21.5
Q ss_pred cccceEEEecCCceeEEEEEEEcCC
Q psy15536 64 EQGQFLALDLGGTNFRVILMHLKKG 88 (200)
Q Consensus 64 E~G~f~alDlGGTnlRv~~v~l~g~ 88 (200)
+.+.++.+|+||.+|-|.++++.++
T Consensus 191 ~~~~vlV~DlGGGT~DvSi~~~~~~ 215 (595)
T PRK01433 191 QKGCYLVYDLGGGTFDVSILNIQEG 215 (595)
T ss_pred CCCEEEEEECCCCcEEEEEEEEeCC
Confidence 4568999999999999999998653
No 113
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=24.95 E-value=87 Score=28.29 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=34.4
Q ss_pred cccccCccccceEEEecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHHH
Q psy15536 57 NNFPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAA 118 (200)
Q Consensus 57 ~~~P~g~E~G~f~alDlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~ 118 (200)
..+|+....|. ..+|+||=.--|+.+.|.| .+.+++.++-.+.++ +.+-.|+-+
T Consensus 145 aglpi~ep~G~-mvvDIGgGTTevaVISlgg----iv~~~Sirv~GD~~D---e~Ii~yvr~ 198 (342)
T COG1077 145 AGLPIMEPTGS-MVVDIGGGTTEVAVISLGG----IVSSSSVRVGGDKMD---EAIIVYVRK 198 (342)
T ss_pred CCCcccCCCCC-EEEEeCCCceeEEEEEecC----EEEEeeEEEecchhh---HHHHHHHHH
Confidence 35788888887 5689977666799999977 235555555544443 344444433
No 114
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=24.32 E-value=75 Score=27.85 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=16.2
Q ss_pred cccceEEEecCCceeEEEEEE
Q psy15536 64 EQGQFLALDLGGTNFRVILMH 84 (200)
Q Consensus 64 E~G~f~alDlGGTnlRv~~v~ 84 (200)
+....+.||+||+++=++.|+
T Consensus 162 ~~~~~lVVDIGG~T~Dv~~v~ 182 (318)
T PF06406_consen 162 EDESVLVVDIGGRTTDVAVVR 182 (318)
T ss_dssp TTSEEEEEEE-SS-EEEEEEE
T ss_pred ccCcEEEEEcCCCeEEeeeec
Confidence 456789999999999998885
No 115
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.12 E-value=67 Score=31.69 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=19.3
Q ss_pred CccccceEEEecCCceeEEEEEE
Q psy15536 62 KIEQGQFLALDLGGTNFRVILMH 84 (200)
Q Consensus 62 g~E~G~f~alDlGGTnlRv~~v~ 84 (200)
+...|+.++.|+|||...++++.
T Consensus 274 g~~~g~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 274 GLKAGNAIVFDMGGTSTDVALII 296 (674)
T ss_pred ccccCCEEEEEcCCcceeeeeee
Confidence 45556799999999999999876
No 116
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=23.72 E-value=87 Score=30.26 Aligned_cols=24 Identities=38% Similarity=0.779 Sum_probs=21.0
Q ss_pred ccceEEEecCCceeEEEEEEEcCC
Q psy15536 65 QGQFLALDLGGTNFRVILMHLKKG 88 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~l~g~ 88 (200)
.+.++.+|+||.++-|.++++.++
T Consensus 200 ~~~vlV~DlGGGT~DvSv~~~~~~ 223 (616)
T PRK05183 200 EGVIAVYDLGGGTFDISILRLSKG 223 (616)
T ss_pred CCEEEEEECCCCeEEEEEEEeeCC
Confidence 567899999999999999999654
No 117
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=23.63 E-value=54 Score=31.53 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=14.6
Q ss_pred EEEecCCceeEEEEEE
Q psy15536 69 LALDLGGTNFRVILMH 84 (200)
Q Consensus 69 ~alDlGGTnlRv~~v~ 84 (200)
++||||.||-.|+.++
T Consensus 2 iGIDlGTtns~va~~~ 17 (599)
T TIGR01991 2 VGIDLGTTNSLVASVR 17 (599)
T ss_pred EEEEEccccEEEEEEE
Confidence 6899999999999886
No 118
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=21.85 E-value=1.1e+02 Score=29.54 Aligned_cols=25 Identities=40% Similarity=0.804 Sum_probs=21.3
Q ss_pred cccceEEEecCCceeEEEEEEEcCC
Q psy15536 64 EQGQFLALDLGGTNFRVILMHLKKG 88 (200)
Q Consensus 64 E~G~f~alDlGGTnlRv~~v~l~g~ 88 (200)
..+.++.+|+||.++-|.++++.++
T Consensus 179 ~~~~vlV~DlGgGT~DvSi~~~~~~ 203 (599)
T TIGR01991 179 SEGIYAVYDLGGGTFDVSILKLTKG 203 (599)
T ss_pred CCCEEEEEEcCCCeEEEEEEEEcCC
Confidence 3567999999999999999999653
No 119
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=21.80 E-value=1.8e+02 Score=26.83 Aligned_cols=68 Identities=19% Similarity=0.477 Sum_probs=35.9
Q ss_pred cccchhHHHHHHHHHHHHHhhccCCCcceeeeEEeecccccccCCceEEEeeccc------eecCCCCCccHHHHHHHHH
Q psy15536 106 LGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKS------FKSSGVEKEDVVKMLKDAI 179 (200)
Q Consensus 106 ~~~~~~lFd~ia~~i~~f~~~~~~~~~~l~lGftFSFP~~q~~~~~~~li~wtKg------f~~~~~~g~dv~~~L~~al 179 (200)
...-++|=+|+|+.++.| +..+ +-|++==|++...-+ |..+ |...+ -.++...|..+|
T Consensus 150 ~d~y~~FA~YLa~Vv~~~-~~~G-------I~f~~IsP~NEP~~~------W~~~~QEG~~~~~~e--~a~vI~~L~~~L 213 (384)
T PF14587_consen 150 PDNYDAFADYLADVVKHY-KKWG-------INFDYISPFNEPQWN------WAGGSQEGCHFTNEE--QADVIRALDKAL 213 (384)
T ss_dssp TT-HHHHHHHHHHHHHHH-HCTT---------EEEEE--S-TTS-------GG--SS-B----HHH--HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH-HhcC-------CccceeCCcCCCCCC------CCCCCcCCCCCCHHH--HHHHHHHHHHHH
Confidence 333467888888877776 4422 334444477765532 6333 22222 258889999999
Q ss_pred HHcCCCCceEE
Q psy15536 180 HRRQDNHVEIV 190 (200)
Q Consensus 180 ~r~~~~~v~v~ 190 (200)
+++| +.-+|.
T Consensus 214 ~~~G-L~t~I~ 223 (384)
T PF14587_consen 214 KKRG-LSTKIS 223 (384)
T ss_dssp HHHT--S-EEE
T ss_pred HhcC-CCceEE
Confidence 9998 676653
No 120
>PRK11678 putative chaperone; Provisional
Probab=21.78 E-value=1.1e+02 Score=28.47 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=20.6
Q ss_pred ccceEEEecCCceeEEEEEEEcCC
Q psy15536 65 QGQFLALDLGGTNFRVILMHLKKG 88 (200)
Q Consensus 65 ~G~f~alDlGGTnlRv~~v~l~g~ 88 (200)
...++.+||||.++-+.+|++.++
T Consensus 208 ~~~vlV~D~GGGT~D~Svv~~~~~ 231 (450)
T PRK11678 208 EKRVLVVDIGGGTTDCSMLLMGPS 231 (450)
T ss_pred CCeEEEEEeCCCeEEEEEEEecCc
Confidence 456899999999999999999653
No 121
>PF12078 DUF3557: Domain of unknown function (DUF3557); InterPro: IPR021942 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length.
Probab=21.65 E-value=82 Score=24.00 Aligned_cols=14 Identities=43% Similarity=0.683 Sum_probs=11.8
Q ss_pred ceeeeEEeeccccc
Q psy15536 133 VIPMGFTFSFPMHQ 146 (200)
Q Consensus 133 ~l~lGftFSFP~~q 146 (200)
..++|-+|||-++|
T Consensus 141 ~r~IGt~~sf~~~~ 154 (154)
T PF12078_consen 141 GRPIGTCFSFGIKQ 154 (154)
T ss_pred CCCCcEEEEEEEEC
Confidence 36799999998876
No 122
>PRK13317 pantothenate kinase; Provisional
Probab=21.31 E-value=87 Score=27.19 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=16.1
Q ss_pred ceEEEecCCceeEEEEEEE
Q psy15536 67 QFLALDLGGTNFRVILMHL 85 (200)
Q Consensus 67 ~f~alDlGGTnlRv~~v~l 85 (200)
..+.||+|||..+++.++=
T Consensus 3 ~~iGIDiGstt~K~v~~~~ 21 (277)
T PRK13317 3 MKIGIDAGGTLTKIVYLEE 21 (277)
T ss_pred ceEEEEeCcccEEEEEEcC
Confidence 4689999999999987664
No 123
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=21.28 E-value=62 Score=30.86 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=15.2
Q ss_pred eEEEecCCceeEEEEEE
Q psy15536 68 FLALDLGGTNFRVILMH 84 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~ 84 (200)
.++||||.||.+++.++
T Consensus 2 viGIDlGtt~s~va~~~ 18 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVME 18 (595)
T ss_pred EEEEEeCcccEEEEEEE
Confidence 57899999999999875
No 124
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=21.17 E-value=4.9e+02 Score=21.69 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=13.4
Q ss_pred EEecCCceeEEEEEEEcC
Q psy15536 70 ALDLGGTNFRVILMHLKK 87 (200)
Q Consensus 70 alDlGGTnlRv~~v~l~g 87 (200)
.||+|-++.++...+-.+
T Consensus 1 g~dig~~~ik~v~~~~~~ 18 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDG 18 (239)
T ss_pred CCCcccceEEEEEEecCC
Confidence 379999999986554444
No 125
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=20.68 E-value=30 Score=22.03 Aligned_cols=13 Identities=31% Similarity=0.869 Sum_probs=6.2
Q ss_pred eeeeEEeeccccc
Q psy15536 134 IPMGFTFSFPMHQ 146 (200)
Q Consensus 134 l~lGftFSFP~~q 146 (200)
...||+|.||--+
T Consensus 29 ~~~GF~F~~p~l~ 41 (48)
T PF08338_consen 29 LEAGFQFRYPTLE 41 (48)
T ss_dssp HHTT---S-SSHH
T ss_pred HHCCCcccCCCHH
Confidence 4589999999543
No 126
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=20.41 E-value=90 Score=25.08 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=15.8
Q ss_pred EEEecCCceeEEEEEEEcC
Q psy15536 69 LALDLGGTNFRVILMHLKK 87 (200)
Q Consensus 69 ~alDlGGTnlRv~~v~l~g 87 (200)
++||.|||+--+.+++-..
T Consensus 2 igIDvGGT~TD~v~~d~~~ 20 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDT 20 (176)
T ss_pred eeEecCCCcEEEEEEeCCC
Confidence 5899999999998876653
No 127
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=20.24 E-value=3.3e+02 Score=23.65 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=17.2
Q ss_pred eEEEecCCceeEEEEEEEcC
Q psy15536 68 FLALDLGGTNFRVILMHLKK 87 (200)
Q Consensus 68 f~alDlGGTnlRv~~v~l~g 87 (200)
|+.||+|-|.-++.+++-.+
T Consensus 3 ~~GIDiGStttK~Vlid~~~ 22 (262)
T TIGR02261 3 TAGIDIGTGAIKTVLFEVDG 22 (262)
T ss_pred EEEEEcCcccEEEEEEecCC
Confidence 68899999999999887644
No 128
>COG2859 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.02 E-value=2.3e+02 Score=24.26 Aligned_cols=75 Identities=15% Similarity=0.004 Sum_probs=53.7
Q ss_pred ecCCceeEEEEEEEcCCceEEEEEEEeecCcccccccchhHHHHHH---HHHHHHHhhccCCCcceeeeEEeeccccc
Q psy15536 72 DLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLA---ACISDFVHEYQVHDRVIPMGFTFSFPMHQ 146 (200)
Q Consensus 72 DlGGTnlRv~~v~l~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia---~~i~~f~~~~~~~~~~l~lGftFSFP~~q 146 (200)
--+-||=|+..|+=..+.++.-..-.|+|.-+....+..+||.-+- ++|..|+.+++...+...+|--|+=|-.+
T Consensus 31 ~~~k~~er~v~VkGlSerev~adt~~w~i~~s~~~n~~~~l~~~l~~~~~kI~afl~~~gi~e~~Ismg~~~~~~~~~ 108 (237)
T COG2859 31 LEFKTNERYVIVKGLSEREVTADTIIWGISFSSQGNTLQALYQDLEQQTEKIQAFLQAQGIPEAEISMGPEYIDREVT 108 (237)
T ss_pred HHhcccccEEEEecccccceeeceEEEEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHcCCCHHHhhcCHhhhcccch
Confidence 3466788887777666666666777888888877777888887654 56788999888877778888334444333
Done!