RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15536
(200 letters)
>gnl|CDD|201171 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2.7.1.1)
contains two structurally similar domains represented by
this family and pfam03727. Some members of the family
have two copies of each of these domains.
Length = 205
Score = 184 bits (468), Expect = 3e-59
Identities = 70/145 (48%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 58 NFPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLA 117
+ P E+G FLALDLGGTNFRV+L+ L + Y +P+EL G+G +LFDF+A
Sbjct: 54 STPTGTEKGDFLALDLGGTNFRVLLVKLTGNGKVEMTQSKYRLPEELMTGTGEQLFDFIA 113
Query: 118 ACISDFVHEYQVH--DRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKML 175
C+ DF+ E +P+GFTFSFP Q S++ GIL+ WTK FK SGVE DVV +L
Sbjct: 114 DCLKDFMDEQFPLGKKEPLPLGFTFSFPCSQTSINEGILIRWTKGFKISGVEGHDVVPLL 173
Query: 176 KDAIHRRQDNHVEIVCVLNDTTGTY 200
++AI RR +++V V+NDT GT
Sbjct: 174 QEAIKRRGIPDIDVVAVVNDTVGTL 198
>gnl|CDD|227359 COG5026, COG5026, Hexokinase [Carbohydrate transport and
metabolism].
Length = 466
Score = 126 bits (318), Expect = 2e-34
Identities = 57/146 (39%), Positives = 82/146 (56%), Gaps = 6/146 (4%)
Query: 59 FPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVK-HYHIPDELRLGSGLK-LFDFL 116
P E G LA+DLGGTN RV L+ L G T +I + +P E R LF F+
Sbjct: 68 LPTGNESGSVLAIDLGGTNLRVCLVVLG-GDGTFDIEQSKSFLPVECRDSESRDELFGFI 126
Query: 117 AACISDFVHEYQVHD--RVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKM 174
A ++ F+ E +P+GFTFS+P++Q S++ G L+ WTK F V DVV++
Sbjct: 127 ADRLAAFIKEQHPSGYGSKLPIGFTFSYPLNQTSINEGQLIRWTKGFDIPEVIGTDVVRL 186
Query: 175 LKDAIHRRQDNHVEIVCVLNDTTGTY 200
L++A+ R + +V V+NDTTGT
Sbjct: 187 LQEALSARNLP-IRVVAVINDTTGTL 211
Score = 43.5 bits (103), Expect = 3e-05
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 12 GTLLQGASLDHKTAIGLILGTGSNACYLEKADKVK 46
GTLL +T IG+I GTG+N CY E ++
Sbjct: 209 GTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIP 243
>gnl|CDD|240270 PTZ00107, PTZ00107, hexokinase; Provisional.
Length = 464
Score = 121 bits (306), Expect = 1e-32
Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 58 NFPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLG---------S 108
N P E+G + A+D GGTNFR + + L+ G + + +P LG +
Sbjct: 66 NLPTGKEKGVYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKAT 125
Query: 109 GLKLFDFLAACISDFVHEYQVHD---RVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSS- 164
LFD +A I + E + + +P+GFTFSFP Q S+++ IL+ WTK F++
Sbjct: 126 ATDLFDHIAKSIKKMMEENGDPEDLNKPVPVGFTFSFPCTQLSVNNAILIDWTKGFETGR 185
Query: 165 ----GVEKEDVVKMLKDAIHRRQDNHVEIVCVLNDTTGT 199
VE +DV ++L DA R +V VLNDT GT
Sbjct: 186 ATNDPVEGKDVGELLNDAFKRNNVP-ANVVAVLNDTVGT 223
Score = 40.0 bits (94), Expect = 4e-04
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 12 GTLLQGASLDHKTA----IGLILGTGSNACYLE 40
GTL+ A K +G+I+GTGSNACY E
Sbjct: 222 GTLISCAYQKPKNTPPCQVGVIIGTGSNACYFE 254
>gnl|CDD|178502 PLN02914, PLN02914, hexokinase.
Length = 490
Score = 119 bits (299), Expect = 1e-31
Identities = 63/148 (42%), Positives = 87/148 (58%), Gaps = 8/148 (5%)
Query: 59 FPRKIEQGQFLALDLGGTNFRVILMHL--KKGLVTDEIVKHYHIPDELRLGSGLKLFDFL 116
P E+G F ALDLGGTNFRV+ + L K V + IP EL G+ +LFDF+
Sbjct: 88 LPSGNEKGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQELMFGTSEELFDFI 147
Query: 117 AACISDFVHE-----YQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDV 171
A+ +++FV + + R +GFTFSFP+ Q S+DSGIL+ WTK F SG +DV
Sbjct: 148 ASGLANFVAKEGGKFHLPEGRKREIGFTFSFPVKQTSIDSGILMKWTKGFAVSGTAGKDV 207
Query: 172 VKMLKDAIHRRQDNHVEIVCVLNDTTGT 199
V L +A+ RQ + + ++NDT GT
Sbjct: 208 VACLNEAM-ERQGLDMRVSALVNDTVGT 234
Score = 37.9 bits (88), Expect = 0.002
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 12 GTLLQGASLDHKTAIGLILGTGSNACYLEKADKV 45
GTL D + +ILGTG+NACY+E+ D +
Sbjct: 233 GTLAGARYWDDDVMVAVILGTGTNACYVERTDAI 266
>gnl|CDD|215226 PLN02405, PLN02405, hexokinase.
Length = 497
Score = 105 bits (263), Expect = 1e-26
Identities = 61/150 (40%), Positives = 81/150 (54%), Gaps = 8/150 (5%)
Query: 57 NNFPRKIEQGQFLALDLGGTNFRVILMHL--KKGLVTDEIVKHYHIPDELRLGSGLKLFD 114
+N P E+G F ALDLGGTNFRV+ + L K G V + + IP L GS LFD
Sbjct: 86 DNLPSGDEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFD 145
Query: 115 FLAACISDFVHEYQVHDRVIP-----MGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKE 169
F+AA ++ FV + P +GFTFSFP+ Q S+ SG L+ WTK F +
Sbjct: 146 FIAAALAKFVATEGEDFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQ 205
Query: 170 DVVKMLKDAIHRRQDNHVEIVCVLNDTTGT 199
DVV L A+ R + + ++NDT GT
Sbjct: 206 DVVGELTKAM-ERVGLDMRVSALVNDTIGT 234
Score = 37.5 bits (87), Expect = 0.003
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 12 GTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHW 48
GTL G + +ILGTG+NA Y+E+A + W
Sbjct: 233 GTLAGGRYYNPDVVAAVILGTGTNAAYVERAQAIPKW 269
>gnl|CDD|215206 PLN02362, PLN02362, hexokinase.
Length = 509
Score = 101 bits (253), Expect = 3e-25
Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 10/151 (6%)
Query: 57 NNFPRKIEQGQFLALDLGGTNFRVILMHL--KKGLVTDEIVKHYHIPDELRLGSGLKLFD 114
++ P E G + ALDLGGTNFRV+ + L ++ + + V+ + IP L + LFD
Sbjct: 86 DDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFD 145
Query: 115 FLAACISDFVHEYQVHDRVIP-----MGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKE 169
F+A+ + FV + + +GFTFSFP+ Q S+ SGIL+ WTK F S + +
Sbjct: 146 FIASSLKQFVEKEENGSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGK 205
Query: 170 DVVKMLKDAIHRRQ-DNHVEIVCVLNDTTGT 199
DV + L+ A++RR D V ++NDT GT
Sbjct: 206 DVAECLQGALNRRGLDMRVAA--LVNDTVGT 234
Score = 41.4 bits (97), Expect = 1e-04
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 12 GTLLQGASLDHKTAIGLILGTGSNACYLEKADKV 45
GTL G D T +I+GTG+NACYLE+ D +
Sbjct: 233 GTLALGHYHDPDTVAAVIIGTGTNACYLERTDAI 266
>gnl|CDD|178206 PLN02596, PLN02596, hexokinase-like.
Length = 490
Score = 53.7 bits (129), Expect = 9e-09
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 9/148 (6%)
Query: 58 NFPRKIEQGQFLALDLGGTNFRVILMHL--KKGLVTDEIVKHYHIPDELRLGSGLKLFDF 115
+ P E+G + L+L G+NF ++ L K ++D + IP + G+ +LFD+
Sbjct: 88 SLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDY 147
Query: 116 LAACISDFVHEYQVH-----DRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKED 170
+A ++ FV E+ +RV +GFT S+P+ Q + SG + W KSF + +
Sbjct: 148 IALELAKFVAEHPGDEADTPERVKKLGFTVSYPVDQAAASSGSAIKW-KSFSADDTVGKA 206
Query: 171 VVKMLKDAIHRRQDNHVEIVCVLNDTTG 198
+V + A+ + + + +++DT G
Sbjct: 207 LVNDINRALEKHGLK-IRVFALVDDTIG 233
Score = 30.2 bits (68), Expect = 0.69
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 7 MDHLRGTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHWETERHGEKNNFPRKIEQG 66
+D G L G + T + LG G+NA Y+E A + W++ E E G
Sbjct: 228 VDDTIGNLAGGRYYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSP-ESQEIVISTEWG 286
Query: 67 QFLALDLGGTNF 78
F + L T F
Sbjct: 287 NFNSCHLPITEF 298
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 45.7 bits (108), Expect = 3e-06
Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 69 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQ 128
L +D+G T+ + + L ++ +EIV + +L + L + + Q
Sbjct: 1 LGIDIGSTSTKAGVADLDGEILPEEIVPTPVG-RPGAVTDLDELEEALRELLKEA--LRQ 57
Query: 129 VHDRVIPMGFTFSFPMHQRSLDSGILVTW 157
+ + +G T + + + + IL
Sbjct: 58 LKSEIDAVGITEPGGVPKENREVIILPNL 86
>gnl|CDD|202746 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2.7.1.1)
contains two structurally similar domains represented
by this family and pfam00349. Some members of the
family have two copies of each of these domains.
Length = 238
Score = 41.1 bits (97), Expect = 1e-04
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 24 TAIGLILGTGSNACYLEKADKV-KHWETERH 53
IGLI+GTG+NACY+E+ + K +
Sbjct: 2 CEIGLIVGTGTNACYMEEMRNIEKLEGDDGR 32
>gnl|CDD|224851 COG1940, NagC, Transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism].
Length = 314
Score = 37.9 bits (88), Expect = 0.002
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 20/134 (14%)
Query: 64 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 123
E L +D+GGT +V L+ L ++ E P + + + A +++
Sbjct: 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRE---RIPTPTP---DPEEAILEAILALVAEL 57
Query: 124 VHEYQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQ 183
+ + Q +I +G +D+G ++ + D+ + L+ +
Sbjct: 58 LKQAQGRVAIIGIGIPGPGD-----VDNGTVIVPAPNL--GWWNGVDLAEELEARLGLP- 109
Query: 184 DNHVEIVCVLNDTT 197
V V ND
Sbjct: 110 ------VFVENDAN 117
>gnl|CDD|182034 PRK09698, PRK09698, D-allose kinase; Provisional.
Length = 302
Score = 30.7 bits (70), Expect = 0.37
Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 15/114 (13%)
Query: 68 FLALDLGGTNFRVILMHLKKGLVTDE-IVKHYHIPDELRLGSGLKLFDFLAACISDFVHE 126
L +D+GGT+ R LV E + H + + + L I +++
Sbjct: 6 VLGIDMGGTHIRF-------CLVDAEGEILHCEKKRTAEVIAPDLVSG-LGEMIDEYLRR 57
Query: 127 YQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIH 180
+ I MGF +R++ S T + + ++ D+ L++ ++
Sbjct: 58 FNARCHGIVMGFPALVSKDRRTVIS------TPNLPLTALDLYDLADKLENTLN 105
>gnl|CDD|227103 COG4762, COG4762, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 168
Score = 30.3 bits (68), Expect = 0.40
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 1 MQARYQMDHLRGTLLQGASLDHKTAIG-------LILGTGSNACYLEKADKVKHWETERH 53
M + GAS + G L LGTG AC+ AD + W R+
Sbjct: 1 MDLNALAELPLTYPEVGASATGRLPAGYNHLDVSLQLGTGE-ACFENAADALMSWGMHRN 59
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 30.4 bits (69), Expect = 0.57
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI 100
L +D+G T+ + +L G V +
Sbjct: 6 VLGIDIGTTSVKAVLFDEDGGEVVATARFENPV 38
>gnl|CDD|220732 pfam10401, IRF-3, Interferon-regulatory factor 3. This is the
interferon-regulatory factor 3 chain of the
hetero-dimeric structure which also contains the shorter
chain CREB-binding protein. These two subunits make up
the DRAF1 (double-stranded RNA-activated factor 1).
Viral dsRNA produced during viral transcription or
replication leads to the activation of DRAF1. The
DNA-binding specificity of DRAF1 correlates with
transcriptional induction of ISG
(interferon-alpha,beta-stimulated gene). IRF-3 preexists
in the cytoplasm of uninfected cells and translocates to
the nucleus following viral infection. Translocation of
IRF-3 is accompanied by an increase in serine and
threonine phosphorylation, and association with the CREB
coactivator occurs only after infection.
Length = 180
Score = 27.6 bits (62), Expect = 3.2
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 13/67 (19%)
Query: 97 HYHIPDELRLGSGLKLFDFLAACISDFVHE---YQVHDRVIP-----MGFTFSFPMHQRS 148
P++L +KLFD F+ E + R P + F +P +
Sbjct: 104 GSDRPNKLERNVPVKLFDL-----QQFLRELARFPEGRRRSPDYTIYLCFGEEWPDGRPR 158
Query: 149 LDSGILV 155
I V
Sbjct: 159 EKKLITV 165
>gnl|CDD|198349 cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial L-rhamnulose
kinases (RhuK, also known as rhamnulokinase; EC
2.7.1.5), which are encoded by the rhaB gene and
catalyze the ATP-dependent phosphorylation of
L-rhamnulose to produce L-rhamnulose-1-phosphate and
ADP. Some uncharacterized homologous sequences are also
included in this subfamily. The prototypical member of
this subfamily is Escherichia coli RhuK, which exists
as a monomer composed of two large domains. The ATP
binding site is located in the cleft between the two
domains. This model includes both the N-terminal
domain, which adopts a ribonuclease H-like fold, and
the structurally related C-terminal domain. The
presence of divalent Mg2+ or Mn2+ is required for
catalysis. Although an intramolecular disulfide bridge
is present in Rhuk, disulfide formation is not
important to the regulation of RhuK enzymatic activity.
Members of this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 440
Score = 27.5 bits (62), Expect = 5.5
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 68 FLALDLGGTNFRVILMHLKKG-LVTDEI 94
LA+DLG ++ RVIL L G L +E+
Sbjct: 2 VLAVDLGASSGRVILGSLDGGKLTLEEV 29
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this family,
including sll0033 (crtH) of Synechocystis sp. PCC 6803,
catalyze a cis-trans isomerization of carotenes to the
all-trans lycopene, a reaction that can also occur
non-enzymatically in light through photoisomerization
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 493
Score = 27.5 bits (61), Expect = 5.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 90 VTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQ 128
+ D + HYH+P+ L + + DF+ ++ F HE +
Sbjct: 82 IPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKE 120
>gnl|CDD|165538 PHA03281, PHA03281, envelope glycoprotein E; Provisional.
Length = 642
Score = 27.3 bits (60), Expect = 6.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 125 HEYQVHDRVIPMGFTFSFPMH 145
H + H V +G TFS MH
Sbjct: 356 HMWHYHSHVFSVGDTFSLAMH 376
>gnl|CDD|153169 cd04897, ACT_ACR_3, ACT domain-containing protein which is composed
almost entirely of four ACT domain repeats (the "ACR"
protein). This CD includes the third ACT domain, of a
novel type of ACT domain-containing protein which is
composed almost entirely of four ACT domain repeats (the
"ACR" protein). ACR proteins, found only in Arabidopsis
and Oryza, as yet, are proposed to function as novel
regulatory or sensor proteins in plants. Nine ACR gene
products have been described (ACR1-8 in Arabidopsis and
OsARC1-9 in Oryza) and are represented in this CD.
Members of this CD belong to the superfamily of ACT
regulatory domains.
Length = 75
Score = 25.5 bits (56), Expect = 7.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 163 SSGVEKEDVVKMLKDAIHRR 182
S+ E++ V+K L+ AI RR
Sbjct: 56 STEGERQRVIKCLEAAIERR 75
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 26.8 bits (60), Expect = 9.7
Identities = 8/43 (18%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 162 KSSGVEKEDVVKMLKDAI----HRRQDNHVEIVCVLNDTTGTY 200
+ G+++E V++ L++A+ ++ I ++ TG
Sbjct: 14 REKGIDREVVIEALEEALATAYKKKYGPEANIRVEIDRKTGDI 56
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.419
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,316,667
Number of extensions: 970584
Number of successful extensions: 773
Number of sequences better than 10.0: 1
Number of HSP's gapped: 755
Number of HSP's successfully gapped: 32
Length of query: 200
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 108
Effective length of database: 6,857,034
Effective search space: 740559672
Effective search space used: 740559672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)