RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15536
(200 letters)
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus,
mutation, glycolysis, nucleotide-binding, transfera;
HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A*
3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A*
3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X*
1v4t_A*
Length = 470
Score = 155 bits (393), Expect = 2e-45
Identities = 65/148 (43%), Positives = 97/148 (65%), Gaps = 4/148 (2%)
Query: 57 NNFPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIV----KHYHIPDELRLGSGLKL 112
+ P E G FL+LDLGGTNFRV+L+ + +G V + Y IP++ G+ L
Sbjct: 68 RSTPEGSEVGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEML 127
Query: 113 FDFLAACISDFVHEYQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVV 172
FD+++ CISDF+ ++Q+ + +P+GFTFSFP+ +D GIL+ WTK FK+SG E +VV
Sbjct: 128 FDYISECISDFLDKHQMKHKKLPLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVV 187
Query: 173 KMLKDAIHRRQDNHVEIVCVLNDTTGTY 200
+L+DAI RR D +++V ++NDT T
Sbjct: 188 GLLRDAIKRRGDFEMDVVAMVNDTVATM 215
Score = 52.0 bits (124), Expect = 2e-08
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 12 GTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHWETERHGEKNNFPRKIEQGQF--- 68
T++ DH+ +G+I+GTG NACY+E+ V+ E G++ E G F
Sbjct: 213 ATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNVELVE----GDEGRMCVNTEWGAFGDS 268
Query: 69 LALDLGGTNFRVIL 82
LD + ++
Sbjct: 269 GELDEFLLEYDRLV 282
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase,
structural genomics consortium, SGC, A enzyme,
ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo
sapiens}
Length = 445
Score = 149 bits (378), Expect = 1e-43
Identities = 67/145 (46%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 56 KNNFPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDF 115
P E+G FLALDLGGTNFRV+L+ + G+ + Y IP+ + GSG +LFD
Sbjct: 49 VRATPDGSERGDFLALDLGGTNFRVLLVRVTTGVQITS--EIYSIPETVAQGSGQQLFDH 106
Query: 116 LAACISDFVHEYQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKML 175
+ CI DF + + + +P+GFTFSFP Q LD GIL+ WTK FK+S E +DVV +L
Sbjct: 107 IVDCIVDFQQKQGLSGQSLPLGFTFSFPCRQLGLDQGILLNWTKGFKASDCEGQDVVSLL 166
Query: 176 KDAIHRRQDNHVEIVCVLNDTTGTY 200
++AI RRQ + +V ++NDT GT
Sbjct: 167 REAITRRQAVELNVVAIVNDTVGTM 191
Score = 50.8 bits (121), Expect = 6e-08
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 12 GTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHWETERHGEKNNFPRKIEQGQF 68
GT++ D + IGLI+GTG+NACY+E+ V G+ +E G F
Sbjct: 189 GTMMSCGYEDPRCEIGLIVGTGTNACYMEELRNVAGVP----GDSGRMCINMEWGAF 241
>1cza_N Hexokinase type I; structurally homologous domains, transferase;
HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3
c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A*
1hkc_A* 1bg3_A* 2nzt_A*
Length = 917
Score = 152 bits (384), Expect = 6e-43
Identities = 70/143 (48%), Positives = 96/143 (67%), Gaps = 2/143 (1%)
Query: 60 PRKIEQGQFLALDLGGTNFRVILMHLKKG--LVTDEIVKHYHIPDELRLGSGLKLFDFLA 117
P E G FLALDLGGTNFRV+L+ ++ G + K Y IP E+ G+G +LFD +
Sbjct: 520 PDGTENGDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIV 579
Query: 118 ACISDFVHEYQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKD 177
+CISDF+ + +P+GFTFSFP Q SLD+GIL+TWTK FK++ DVV +L+D
Sbjct: 580 SCISDFLDYMGIKGPRMPLGFTFSFPCQQTSLDAGILITWTKGFKATDCVGHDVVTLLRD 639
Query: 178 AIHRRQDNHVEIVCVLNDTTGTY 200
AI RR++ +++V V+NDT GT
Sbjct: 640 AIKRREEFDLDVVAVVNDTVGTM 662
Score = 151 bits (381), Expect = 2e-42
Identities = 65/146 (44%), Positives = 94/146 (64%), Gaps = 2/146 (1%)
Query: 57 NNFPRKIEQGQFLALDLGGTNFRVILMHL--KKGLVTDEIVKHYHIPDELRLGSGLKLFD 114
+ P E+G F+ALDLGG++FR++ + + +K + Y P+ + GSG +LFD
Sbjct: 69 RSIPDGSEKGDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFD 128
Query: 115 FLAACISDFVHEYQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKM 174
+A C+ DF+ + ++ D+ +P+GFTFSFP Q +D IL+TWTK FK+SGVE DVVK+
Sbjct: 129 HVAECLGDFMEKRKIKDKKLPVGFTFSFPCQQSKIDEAILITWTKRFKASGVEGADVVKL 188
Query: 175 LKDAIHRRQDNHVEIVCVLNDTTGTY 200
L AI +R D IV V+NDT GT
Sbjct: 189 LNKAIKKRGDYDANIVAVVNDTVGTM 214
Score = 51.7 bits (123), Expect = 3e-08
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 12 GTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHWETERHGEKNNFPRKIEQGQF 68
GT++ A + +GLI+GTGSNACY+E+ V+ E G++ +E G F
Sbjct: 660 GTMMTCAYEEPTCEVGLIVGTGSNACYMEEMKNVEMVE----GDQGQMCINMEWGAF 712
Score = 50.9 bits (121), Expect = 6e-08
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 12 GTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHWETE 51
GT++ D +GLI+GTG+NACY+E+ + E +
Sbjct: 212 GTMMTCGYDDQHCEVGLIIGTGTNACYMEELRHIDLVEGD 251
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma
mansoni} SCOP: c.55.1.3 c.55.1.3
Length = 451
Score = 147 bits (372), Expect = 1e-42
Identities = 60/145 (41%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Query: 57 NNFPRKIEQGQFLALDLGGTNFRVILMHLK-KGLVTDEIVKHYHIPDELRLGSGLKLFDF 115
P E G FLALDLGGTN+RV+ + L+ KG + Y IP E GSG +LF +
Sbjct: 59 TKTPNGTETGNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAEKMSGSGTELFKY 118
Query: 116 LAACISDFVHEYQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKML 175
+A ++DF+ + D+ +GFTFSFP Q+ L LV WTK F + GVE +V ++L
Sbjct: 119 IAETLADFLENNGMKDKKFDLGFTFSFPCVQKGLTHATLVRWTKGFSADGVEGHNVAELL 178
Query: 176 KDAIHRRQDNHVEIVCVLNDTTGTY 200
+ + +R + +V+ V V+NDT GT
Sbjct: 179 QTELDKR-ELNVKCVAVVNDTVGTL 202
Score = 53.5 bits (128), Expect = 8e-09
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 12 GTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHWETERHGE 55
GTL A D K A+GLI+GTG+N Y+E + KV+ + + E
Sbjct: 200 GTLASCALEDPKCAVGLIVGTGTNVAYIEDSSKVELMDGVKEPE 243
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression
binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A
{Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A*
3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Length = 485
Score = 142 bits (358), Expect = 2e-40
Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 3/146 (2%)
Query: 57 NNFPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFL 116
+P E G FLALDLGGTN RV+L+ L D Y +PD LR G+ +L+ F+
Sbjct: 71 VEYPTGKETGDFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRLPDHLRTGTSEQLWSFI 130
Query: 117 AACISDFVHEY--QVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKM 174
A C+ +FV E+ +P+GFTFS+P Q+ ++SG+L WTK F GVE DVV M
Sbjct: 131 AKCLKEFVDEWYPDGVSEPLPLGFTFSYPASQKKINSGVLQRWTKGFDIEGVEGHDVVPM 190
Query: 175 LKDAIHRRQDNHVEIVCVLNDTTGTY 200
L++ I + + +V ++NDTTGT
Sbjct: 191 LQEQIEKLNI-PINVVALINDTTGTL 215
Score = 52.7 bits (126), Expect = 1e-08
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 12 GTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHWETERHGEKNNFPR---KIEQGQF 68
GTL+ D +T +G+I+GTG N Y + ++ E + E G F
Sbjct: 213 GTLVASLYTDPQTKMGIIIGTGVNGAYYDVVSGIEKLEGLLPEDIGPDSPMAINCEYGSF 272
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG;
2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB:
1hkg_A
Length = 457
Score = 126 bits (318), Expect = 9e-35
Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 4/144 (2%)
Query: 58 NFPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLA 117
+ G FLA+ +GG + VIL+ L + L+ A
Sbjct: 53 KQVSGAQAGSFLAIVMGGGDLEVILISLAGRQESSIXASRSLAAAMSTTAIPSDLWGNXA 112
Query: 118 ACISDFVH-EYQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLK 176
+ F E+ +P+GFTF + + G + +F + + ++ +
Sbjct: 113 XSNAAFSSXEFSSXAGSVPLGFTFXEAGAKEXVIKGQITXQAXAFSLAXL--XKLISAMX 170
Query: 177 DAIHRRQDNHVEIVCVLNDTTGTY 200
+A D V + D+ G
Sbjct: 171 NAXFPAGD-XXXSVADIXDSHGIL 193
Score = 52.4 bits (125), Expect = 2e-08
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 12 GTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHWE 49
G L D +G+I G+G NA Y + +
Sbjct: 191 GILXXVNYTDAXIKMGIIFGSGVNAAYWCDSTXIGDAA 228
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA
binding P helix-turn-helix, phosphotransferase system;
2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10
c.55.1.10 PDB: 3bp8_A
Length = 406
Score = 35.3 bits (82), Expect = 0.009
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 64 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 123
E +L+L + + L L ++V L L L L D + + I F
Sbjct: 83 EAWHYLSLRISRGEIFLALRDLSS-----KLVVEESQE--LALKDDLPLLDRIISHIDQF 135
Query: 124 VHEYQV-HDRVIPMG 137
+Q +R+ +
Sbjct: 136 FIRHQKKLERLTSIA 150
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein
structure initiative, midwest center for structural
genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP:
a.4.5.63 c.55.1.10 c.55.1.10
Length = 429
Score = 33.8 bits (78), Expect = 0.026
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 64 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 123
QFL++ LG + L L E++ I + + L I +F
Sbjct: 106 LGWQFLSMRLGRGYLTIALHELGG-----EVLIDTKID--IHEIDQDDVLARLLFEIEEF 158
Query: 124 VHEYQVH-DRVIPMG 137
Y DRV +
Sbjct: 159 FQTYAAQLDRVTSIA 173
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET:
BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Length = 267
Score = 31.2 bits (71), Expect = 0.16
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 61 RKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACI 120
+ + + +D+GGT + ++ LKKG + E + +P + + +A +
Sbjct: 7 KSHKNAPLIGIDIGGTGIKGGIVDLKKGKLLGERFR---VPTPQPAT-PESVAEAVALVV 62
Query: 121 SDFVHEYQVHDRVIPMGFTF 140
++ + P+G TF
Sbjct: 63 AELSARPEAPAAGSPVGVTF 82
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase;
HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Length = 373
Score = 31.2 bits (70), Expect = 0.20
Identities = 10/76 (13%), Positives = 20/76 (26%), Gaps = 8/76 (10%)
Query: 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 127
D+GGT+ R+ + K V Y + K + ++ +
Sbjct: 31 TFVGDVGGTSARMGFVREGKNDSVHACVTRYSMKR--------KDITEIIEFFNEIIELM 82
Query: 128 QVHDRVIPMGFTFSFP 143
+ P
Sbjct: 83 PASVMKRVKAGVINVP 98
>3mcp_A Glucokinase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
transferase; 3.00A {Parabacteroides distasonis}
Length = 366
Score = 30.0 bits (68), Expect = 0.51
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 9/37 (24%)
Query: 69 LALDLGGTNFRVILMHLKKGLVTD--EIVKHYHIPDE 103
+ LD GGTNF + EI +P
Sbjct: 12 MTLDAGGTNFVF-------SAIQGGKEIADPVVLPAC 41
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.52
Identities = 22/146 (15%), Positives = 38/146 (26%), Gaps = 37/146 (25%)
Query: 74 GGTNFRVILMHLKKGLVTDEI---------VKHYHIPDELRLGSGLKLFDFLAACISDFV 124
T + L H L DE+ + +P E+ + +L +A I D +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGL 341
Query: 125 H--------EYQVHDRVIPMGFTFSFPMHQRSL---------DSGI----LVT-WTKSFK 162
+I P R + + I L W F
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW---FD 398
Query: 163 SSGVEKEDVVKML--KDAIHRRQDNH 186
+ VV L + ++
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKES 424
>2yhw_A Bifunctional UDP-N-acetylglucosamine
2-epimerase/N-acetylmannosamine kinase; transferase,
sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A
{Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Length = 343
Score = 29.3 bits (66), Expect = 0.77
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 69 LALDLGGTNFRVILMHLKKGLVTD--EIVKHYHIPDELRLGSGLKLFDFLAACISDFVHE 126
LA+DLGGTN RV +V+ EIVK Y + + + + + E
Sbjct: 33 LAVDLGGTNLRV-------AIVSMKGEIVKKYTQFNPKTYEERI---NLILQMCVEAAAE 82
Query: 127 YQV-HDRVIPMG 137
+ R++ +G
Sbjct: 83 AVKLNCRILGVG 94
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl
transfer, hexokinas actin superfamily, L-rhamnulose
kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 29.5 bits (67), Expect = 0.78
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 68 FLALDLGGTNFRVILMHLKKGLV 90
+A+DLG ++ RV+L ++
Sbjct: 6 CVAVDLGASSGRVMLARYERECR 28
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding,
transferase; HET: MSE BGC; 2.20A {Escherichia coli}
SCOP: c.55.1.7 PDB: 1q18_A*
Length = 332
Score = 29.4 bits (65), Expect = 0.78
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 127
L D+GGTN R+ L + G ++ K Y D + L A I ++ E+
Sbjct: 16 ALVGDVGGTNARLALCDIASGEISQ--AKTYSGLD----------YPSLEAVIRVYLEEH 63
Query: 128 QVH 130
+V
Sbjct: 64 KVE 66
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A
{Thermus thermophilus}
Length = 302
Score = 29.1 bits (66), Expect = 0.81
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 69 LALDLGGTNFRVILMHLKKGLVTD-EIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 127
+ LDLGGT G+ ++ +P G ++ + LA E
Sbjct: 4 VGLDLGGTKIAA-------GVFDGKRLLSKVVVPTPKE--GGERVAEALAEAAERAEREA 54
Query: 128 QVHDRVIPMG 137
V I +G
Sbjct: 55 GVRGEAIGLG 64
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 29.4 bits (66), Expect = 0.90
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIP 101
+ +DLG T +V L L ++ ++ +
Sbjct: 8 TIVIDLGKTLSKVSLWDLDGRMLDRQVRPSIPLE 41
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix,
structural PSI-2, protein structure initiative; HET:
MSE; 2.02A {Enterococcus faecalis}
Length = 326
Score = 29.1 bits (66), Expect = 0.91
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 68 FLALDLGGTNFRVILMHLKKGLVTD--EIVKHYHIPDELRLGSGLKLFDFLAACISDFVH 125
+ +DLGGT + ++T + + + I + G + + I +
Sbjct: 8 IIGIDLGGTTIKF-------AILTTDGVVQQKWSIETNILED-GKHIVPSIIESIRHRID 59
Query: 126 EYQV-HDRVIPMG 137
Y + + + +G
Sbjct: 60 LYNMKKEDFVGIG 72
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.65A {Cytophaga hutchinsonii}
Length = 321
Score = 29.1 bits (66), Expect = 0.94
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 42 ADKVKHWETERHGEKNNFPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTD--EIVKHYH 99
+DK+ H + L +D+GGT+ +K GLVT EI
Sbjct: 3 SDKIHHHHHHENLYFQGM--------ILGIDVGGTS-------VKFGLVTPEGEIQNATR 47
Query: 100 IPDELRLGSGLKLFDFLAACISDFVHEYQV 129
+ G+ + + I +F+ +Y +
Sbjct: 48 FMTADWVN-GIGFVESMKLEIGNFLKQYPI 76
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural
GENO protein structure initiative, midwest center for
structural genomics; HET: MLY MSE MLZ ADP; 1.66A
{Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Length = 302
Score = 28.8 bits (64), Expect = 1.1
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 9/39 (23%)
Query: 65 QGQFLALDLGGTNFRVILMHLKKGLVTD--EIVKHYHIP 101
++ GGT F + + I+ P
Sbjct: 2 NAMLGGIEAGGTXFVC-------AVGREDGTIIDRIEFP 33
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural
genomics, PSI, protein structure initiative; 3.20A
{Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Length = 291
Score = 28.6 bits (63), Expect = 1.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 18 ASLDHKTAIGLILGTGSNACYLEKADKVKH 47
K I ILGTGSN+C+ + V +
Sbjct: 102 GLCGQKAGIACILGTGSNSCFYNGKEIVSN 131
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23,
struc genomics, PSI, protein structure initiative; 2.20A
{Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Length = 305
Score = 28.3 bits (63), Expect = 1.8
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 20 LDHKTAIGLILGTGSNACYLEKADKVKH 47
+ I + LGTGS L +
Sbjct: 119 HGGQPGIIVALGTGSIGEALYPDGSHRE 146
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 2.30A
{Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Length = 291
Score = 28.2 bits (62), Expect = 2.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 18 ASLDHKTAIGLILGTGSNACYL 39
A I ILGTGSN+C
Sbjct: 104 ALCGDSEGIACILGTGSNSCLF 125
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 2.1
Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 33/116 (28%)
Query: 92 DEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGF------------- 138
+E+ Y L +G L F A +S+ + ++V G
Sbjct: 171 EELRDLYQTYHVL-VGD---LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 139 --------TFSFPMHQRSLDSGI--LVTWTKSFKSSGVEKEDVVKMLKDAIHRRQD 184
S P+ G+ L + + K G ++ LK A Q
Sbjct: 227 DKDYLLSIPISCPL------IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Score = 28.1 bits (62), Expect = 2.5
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 23/110 (20%)
Query: 9 HLRGTLLQGASLDHKTA------IGLILGTGSNACYLEKADKVKHWETERHGEK----N- 57
RG +Q A + I + G + + E V +R G N
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 58 NFPRKIEQ----GQFLALD-LGGT-NF----RVILMHLKKGLVTDEIVKH 97
N +Q G ALD + NF ++ ++ L+K L +E+ H
Sbjct: 1847 NVEN--QQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 26.2 bits (57), Expect = 9.3
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 169 EDVVKMLKDAIHRRQDNHVEIVCVLND 195
++ ++ + + + +R VEIV N
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIV---NY 1846
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar
methabolism, structural genomics, PSI, protein structure
initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10
c.55.1.10
Length = 289
Score = 27.9 bits (63), Expect = 2.2
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 14/73 (19%)
Query: 69 LALDLGGTNFRVILMHLKKGLVTD--EIVKHYHIPDELRLGSGLKLFDFLAACISDFVHE 126
LA+D+GGT L L+ +I +P + L +S V
Sbjct: 4 LAIDIGGTK-------LAAALIGADGQIRDRRELPTPASQTP-----EALRDALSALVSP 51
Query: 127 YQVHDRVIPMGFT 139
Q H + + + T
Sbjct: 52 LQAHAQRVAIAST 64
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 26.8 bits (59), Expect = 2.8
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 84 HLKKGLVTDEIVKHYHI---PDELRLGSGLKLFDFLAACISDFVHEYQVH 130
KG +++V+H+ I P +++ F +S V ++ +
Sbjct: 70 QPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYF--GSLSALVSQHSIS 117
>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.55A {Sinorhizobium meliloti}
Length = 330
Score = 27.4 bits (60), Expect = 3.0
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPD 102
+ A+D G ++FR+ ++ + G V E +
Sbjct: 9 YAAVDWGTSSFRLWIIG-EDGAVLAERRSAEGMTT 42
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics,
center for structural genomics of infec diseases, csgid,
transferase; 1.95A {Vibrio vulnificus}
Length = 327
Score = 27.2 bits (61), Expect = 4.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 17 GASLDHKTAIGLILGTG 33
D + +GLILGTG
Sbjct: 141 EELQDAPSVMGLILGTG 157
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 26.8 bits (60), Expect = 4.3
Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 163 SSGVEKEDVVKMLKDAI-HRRQD 184
S G+ ++ M+KD++ + QD
Sbjct: 113 SYGLTDSEIASMIKDSMSYAEQD 135
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A
{Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Length = 321
Score = 26.8 bits (60), Expect = 4.9
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 9/35 (25%)
Query: 69 LALDLGGTNFRVILMHLKKGLVTD--EIVKHYHIP 101
+ +D+GGT G+V + I+ + +
Sbjct: 5 IGVDIGGTKIAA-------GVVDEEGRILSTFKVA 32
>2ap1_A Putative regulator protein; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.90A
{Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Length = 327
Score = 26.8 bits (60), Expect = 4.9
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 17 GASLDHKTAIGLILGTG 33
+ +GLILGTG
Sbjct: 141 DEFTQYPLVMGLILGTG 157
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor
complex, catalytic fragment, S genomics, structural
genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens}
PDB: 3kcz_A* 1gs0_A
Length = 368
Score = 26.6 bits (58), Expect = 6.3
Identities = 17/82 (20%), Positives = 27/82 (32%)
Query: 3 ARYQMDHLRGTLLQGASLDHKTAIGLILGTGSNACYLEKADKVKHWETERHGEKNNFPRK 62
Y+ H L S + K + T + + +E E+ GEK F
Sbjct: 149 QHYRNLHCALRPLDHESYEFKVISQYLQSTHAPTHSDYTMTLLDLFEVEKDGEKEAFRED 208
Query: 63 IEQGQFLALDLGGTNFRVILMH 84
+ L +N+ IL H
Sbjct: 209 LHNRMLLWHGSRMSNWVGILSH 230
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3,
structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus}
SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B*
2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Length = 260
Score = 26.3 bits (57), Expect = 6.4
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 4/99 (4%)
Query: 49 ETERHGEKNNFPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGS 108
+ ++F R+ +F + F ++ +H EI Y + +++
Sbjct: 99 DGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDAVAEINSLYDVYLDVQQKW 158
Query: 109 GLK----LFDFLAACISDFVHEYQVHDRVIPMGFTFSFP 143
L + DF A C ++ F + P
Sbjct: 159 HLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIP 197
>3nuw_A 2-OXO-3-deoxygalactonate kinase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 2.09A {Klebsiella pneumoniae}
PDB: 3r1x_A*
Length = 295
Score = 26.2 bits (57), Expect = 7.9
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 67 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI 100
+++A+D G TN R L + + +
Sbjct: 7 RYIAIDWGSTNLRAWLY--QGEECLESRQSEAGV 38
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 26.2 bits (58), Expect = 8.1
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 9/127 (7%)
Query: 27 GLILGTGSNACYLEKADKVKHWETERHGEKNNFPRKIEQGQFLALDLGGTNFRVILMHLK 86
G+ L GS L+ + +E RK + +LG
Sbjct: 86 GIPLAVGSQMSALKDPSERLSYE---------IVRKENPNGLIFANLGSEATAAQAKEAV 136
Query: 87 KGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRVIPMGFTFSFPMHQ 146
+ + + + H ++ E+ + G + F I V V +GF S
Sbjct: 137 EMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAG 196
Query: 147 RSLDSGI 153
+ ++G
Sbjct: 197 KLYEAGA 203
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 25.7 bits (57), Expect = 9.8
Identities = 7/16 (43%), Positives = 14/16 (87%)
Query: 163 SSGVEKEDVVKMLKDA 178
SSG+ ++++ KM++DA
Sbjct: 116 SSGLNEDEIQKMVRDA 131
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics,
joint CEN structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Length = 310
Score = 26.0 bits (58), Expect = 9.9
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 17 GASLDHKTAIGLILGTG 33
L + + LGTG
Sbjct: 127 ENRLTQQLVLAAYLGTG 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.419
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,156,120
Number of extensions: 188183
Number of successful extensions: 554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 539
Number of HSP's successfully gapped: 55
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)