RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15536
(200 letters)
>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma
mansoni) [TaxId: 6183]}
Length = 208
Score = 169 bits (429), Expect = 5e-54
Identities = 60/144 (41%), Positives = 86/144 (59%), Gaps = 2/144 (1%)
Query: 58 NFPRKIEQGQFLALDLGGTNFRVILMHLK-KGLVTDEIVKHYHIPDELRLGSGLKLFDFL 116
P E G FLALDLGGTN+RV+ + L+ KG + Y IP E GSG +LF ++
Sbjct: 58 KTPNGTETGNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAEKMSGSGTELFKYI 117
Query: 117 AACISDFVHEYQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLK 176
A ++DF+ + D+ +GFTFSFP Q+ L LV WTK F + GVE +V ++L+
Sbjct: 118 AETLADFLENNGMKDKKFDLGFTFSFPCVQKGLTHATLVRWTKGFSADGVEGHNVAELLQ 177
Query: 177 DAIHRRQDNHVEIVCVLNDTTGTY 200
+ +R + +V+ V V+NDT GT
Sbjct: 178 TELDKR-ELNVKCVAVVNDTVGTL 200
>d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 167 bits (424), Expect = 3e-53
Identities = 65/146 (44%), Positives = 94/146 (64%), Gaps = 2/146 (1%)
Query: 57 NNFPRKIEQGQFLALDLGGTNFRVILMHL--KKGLVTDEIVKHYHIPDELRLGSGLKLFD 114
+ P E+G F+ALDLGG++FR++ + + +K + Y P+ + GSG +LFD
Sbjct: 54 RSIPDGSEKGDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFD 113
Query: 115 FLAACISDFVHEYQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKM 174
+A C+ DF+ + ++ D+ +P+GFTFSFP Q +D IL+TWTK FK+SGVE DVVK+
Sbjct: 114 HVAECLGDFMEKRKIKDKKLPVGFTFSFPCQQSKIDEAILITWTKRFKASGVEGADVVKL 173
Query: 175 LKDAIHRRQDNHVEIVCVLNDTTGTY 200
L AI +R D IV V+NDT GT
Sbjct: 174 LNKAIKKRGDYDANIVAVVNDTVGTM 199
>d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 205
Score = 166 bits (423), Expect = 3e-53
Identities = 65/147 (44%), Positives = 97/147 (65%), Gaps = 4/147 (2%)
Query: 58 NFPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIV----KHYHIPDELRLGSGLKLF 113
+ P E G FL+LDLGGTNFRV+L+ + +G V + Y IP++ G+ LF
Sbjct: 51 STPEGSEVGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLF 110
Query: 114 DFLAACISDFVHEYQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVK 173
D+++ CISDF+ ++Q+ + +P+GFTFSFP+ +D GIL+ WTK FK+SG E +VV
Sbjct: 111 DYISECISDFLDKHQMKHKKLPLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVVG 170
Query: 174 MLKDAIHRRQDNHVEIVCVLNDTTGTY 200
+L+DAI RR D +++V ++NDT T
Sbjct: 171 LLRDAIKRRGDFEMDVVAMVNDTVATM 197
>d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 205
Score = 164 bits (416), Expect = 4e-52
Identities = 70/145 (48%), Positives = 96/145 (66%), Gaps = 2/145 (1%)
Query: 58 NFPRKIEQGQFLALDLGGTNFRVILMHLK--KGLVTDEIVKHYHIPDELRLGSGLKLFDF 115
P E G FLALDLGGTNFRV+L+ ++ K + K Y IP E+ G+G +LFD
Sbjct: 53 RTPDGTENGDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDH 112
Query: 116 LAACISDFVHEYQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKML 175
+ +CISDF+ + +P+GFTFSFP Q SLD+GIL+TWTK FK++ DVV +L
Sbjct: 113 IVSCISDFLDYMGIKGPRMPLGFTFSFPCQQTSLDAGILITWTKGFKATDCVGHDVVTLL 172
Query: 176 KDAIHRRQDNHVEIVCVLNDTTGTY 200
+DAI RR++ +++V V+NDT GT
Sbjct: 173 RDAIKRREEFDLDVVAVVNDTVGTM 197
>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 207
Score = 156 bits (397), Expect = 3e-49
Identities = 60/146 (41%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 58 NFPRKIEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLK-LFDFL 116
+FP E G FLA+DLGGTN RV+L+ L D Y +PD +R L++F+
Sbjct: 55 DFPTGKESGDFLAIDLGGTNLRVVLVKLGGDRTFDTTQSKYRLPDAMRTTQNPDELWEFI 114
Query: 117 AACISDFV--HEYQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKM 174
A + F+ Q IP+GFTFSFP Q ++ GIL WTK F +E DVV M
Sbjct: 115 ADSLKAFIDEQFPQGISEPIPLGFTFSFPASQNKINEGILQRWTKGFDIPNIENHDVVPM 174
Query: 175 LKDAIHRRQDNHVEIVCVLNDTTGTY 200
L+ I +R +E+V ++NDTTGT
Sbjct: 175 LQKQITKRNIP-IEVVALINDTTGTL 199
>d1bdga2 c.55.1.3 (A:223-460) Hexokinase {Blood fluke (Schistosoma
mansoni) [TaxId: 6183]}
Length = 237
Score = 52.2 bits (125), Expect = 4e-09
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 23 KTAIGLILGTGSNACYLEKADKVKHWETERHGE 55
K A+GLI+GTG+N Y+E + KV+ + + E
Sbjct: 1 KCAVGLIVGTGTNVAYIEDSSKVELMDGVKEPE 33
>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 262
Score = 51.4 bits (123), Expect = 8e-09
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 24 TAIGLILGTGSNACYLEKADKVKHWETERHGEKNNFPRKI---EQGQF--LALDLGGTNF 78
T +G+I GTG N Y + ++ + + + E G F + L T +
Sbjct: 2 TKMGVIFGTGVNGAYYDVCSDIEKLQGKLSDDIPPSAPMAINCEYGSFDNEHVVLPRTKY 61
Query: 79 RVIL 82
+ +
Sbjct: 62 DITI 65
>d1v4sa2 c.55.1.3 (A:219-461) Glucokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 243
Score = 48.3 bits (115), Expect = 1e-07
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 26 IGLILGTGSNACYLEKADKVKHWETE 51
+G+I+GTG NACY+E+ V+ E +
Sbjct: 4 VGMIVGTGCNACYMEEMQNVELVEGD 29
>d1czan4 c.55.1.3 (N:671-913) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 243
Score = 47.2 bits (112), Expect = 2e-07
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 26 IGLILGTGSNACYLEKADKVKHWETE 51
+GLI+GTGSNACY+E+ V+ E +
Sbjct: 4 VGLIVGTGSNACYMEEMKNVEMVEGD 29
>d1czan2 c.55.1.3 (N:223-465) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 243
Score = 46.8 bits (111), Expect = 3e-07
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 26 IGLILGTGSNACYLEKADKVKHWETE 51
+GLI+GTG+NACY+E+ + E +
Sbjct: 4 VGLIIGTGTNACYMEELRHIDLVEGD 29
>d1woqa1 c.55.1.10 (A:11-139) Inorganic
polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter
sp. KM [TaxId: 184230]}
Length = 129
Score = 37.2 bits (85), Expect = 3e-04
Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 18/127 (14%)
Query: 69 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQ 128
+ +D+GGT + ++ LKKG +++ + + + + +A +++ +
Sbjct: 5 IGIDIGGTGIKGGIVDLKKG----KLLGERFRVPTPQPATPESVAEAVALVVAELSARPE 60
Query: 129 VHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNHVE 188
P+G TF + V + + D+ +L + R
Sbjct: 61 APAAGSPVGVTFPGIIQHG-------VVHSAANVDKSWLNTDIDALLTARLGRP------ 107
Query: 189 IVCVLND 195
V V+ND
Sbjct: 108 -VEVIND 113
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 114
Score = 31.5 bits (71), Expect = 0.020
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 69 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDEL--RLGSGLKLFDFLAACISDFVHE 126
+D+GGT + + ++ + ++L L L D+ +S
Sbjct: 4 ATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAV 63
Query: 127 YQVHDRVI 134
Q +
Sbjct: 64 NQETGVID 71
>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007
{Vibrio cholerae [TaxId: 666]}
Length = 128
Score = 30.6 bits (68), Expect = 0.055
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Query: 67 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHE 126
QFL++ LG + L L ++ D + + I + + L I +F
Sbjct: 5 QFLSMRLGRGYLTIALHELGGEVLIDTKIDIHEIDQD-------DVLARLLFEIEEFFQT 57
Query: 127 YQVHDRVIPMGFTFSFPMH 145
Y + +
Sbjct: 58 YAAQLDRVTSIAITLPGLV 76
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga
maritima [TaxId: 2336]}
Length = 128
Score = 29.8 bits (66), Expect = 0.10
Identities = 14/129 (10%), Positives = 35/129 (27%), Gaps = 21/129 (16%)
Query: 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 127
L +++ L+ ++ E D + + + I
Sbjct: 6 VLGIEVTRDEIAACLIDASMNILAHEAHPLPSQSD------REETLNVMYRIIDRAKDMM 59
Query: 128 QVH-DRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQDNH 186
+ ++ + P+ + GI++ + + +LK+
Sbjct: 60 EKLGSKLSALTVAAPGPI---DTERGIIIDPRNFPL----SQIPLANLLKEKYGIE---- 108
Query: 187 VEIVCVLND 195
V V ND
Sbjct: 109 ---VWVEND 114
>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus
subtilis [TaxId: 1423]}
Length = 118
Score = 29.7 bits (66), Expect = 0.10
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDEL 104
++ GGT F + G + D I +PDE
Sbjct: 2 LGGIEAGGTKFVCAVGRE-DGTIIDRIEFPTKMPDET 37
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId:
562]}
Length = 129
Score = 28.8 bits (63), Expect = 0.21
Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 19/132 (14%)
Query: 64 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 123
E +L+L + + L L LV +E + D L D + + I F
Sbjct: 2 EAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL-------PLLDRIISHIDQF 54
Query: 124 VHEYQVHDRVIPMGFTFSFPMHQRSLDSGILVTWTKSFKSSGVEKEDVVKMLKDAIHRRQ 183
+Q + ++GI+ + + L+
Sbjct: 55 FIRHQKKLE--RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL---GEALEQHTGVP- 108
Query: 184 DNHVEIVCVLND 195
V + +D
Sbjct: 109 ------VYIQHD 114
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX
{Salmonella typhimurium [TaxId: 90371]}
Length = 117
Score = 28.7 bits (63), Expect = 0.23
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 127
+ D+GGT + + + L ++ V H S D + + + +
Sbjct: 2 YYGFDIGGTKIALGVFDSTRRLQWEKRVPTPHT-------SYSAFLDAVCELVEEADQRF 54
Query: 128 QVHDRVIPMG 137
V V
Sbjct: 55 GVKGSVGIGI 64
>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli
[TaxId: 562]}
Length = 319
Score = 29.4 bits (64), Expect = 0.25
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 69 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQ 128
L D+GGTN R+ L + G ++ K Y D + L A I ++ E++
Sbjct: 4 LVGDVGGTNARLALCDIASGEISQA--KTYSGLD----------YPSLEAVIRVYLEEHK 51
Query: 129 VHDRVIPMG 137
V + +
Sbjct: 52 VEVKDGCIA 60
>d1zc6a2 c.55.1.5 (A:122-292) Probable N-acetylglucosamine kinase
CV2896 {Chromobacterium violaceum [TaxId: 536]}
Length = 171
Score = 28.1 bits (62), Expect = 0.49
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 26 IGLILGTGSNACYLEKADKVKH 47
I + LGTGS L +
Sbjct: 4 IIVALGTGSIGEALYPDGSHRE 25
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli
[TaxId: 562]}
Length = 110
Score = 27.4 bits (60), Expect = 0.51
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 69 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFD----FLAACISDFV 124
L D+GGTN R+ L + G ++ L + L + CI+
Sbjct: 5 LVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGCIAIAC 64
Query: 125 HEYQVHDRVIPMGFTFS 141
+ + FS
Sbjct: 65 PITGDWVAMTNHTWAFS 81
>d1zxoa2 c.55.1.5 (A:107-280) Hypothetical protein BT3618
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 174
Score = 27.6 bits (61), Expect = 0.67
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 23 KTAIGLILGTGSNACYLEKADKVKH 47
K I ILGTGSN+C+ + V +
Sbjct: 1 KAGIACILGTGSNSCFYNGKEIVSN 25
>d1zbsa1 c.55.1.5 (A:108-283) Hypothetical protein PG1100
{Porphyromonas gingivalis [TaxId: 837]}
Length = 176
Score = 26.2 bits (57), Expect = 2.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 26 IGLILGTGSNACYLEKADKVKH 47
I ILGTGSN+C + + +
Sbjct: 5 IACILGTGSNSCLFDGREIKAN 26
>d2ch5a1 c.55.1.5 (A:118-344) N-acetylglucosamine kinase, NAGK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 26.0 bits (56), Expect = 2.9
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 26 IGLILGTGSNACYLEKADKVKH 47
+ LI GTGSN +
Sbjct: 4 VVLISGTGSNCRLINPDGSESG 25
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 26.0 bits (56), Expect = 3.6
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 68 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDE 103
L +D+G T + I++ K +V +V
Sbjct: 4 TLGIDVGSTASKCIILKDGKEIVAKSLVAVGTGTSG 39
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK
{Escherichia coli [TaxId: 562]}
Length = 119
Score = 25.2 bits (54), Expect = 3.8
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 69 LALDLGGTNFRVILMHLKKGLVTDEIVKH 97
LA+D+GGT L+ + +
Sbjct: 4 LAIDIGGTKLAAALIGADGQIRDRRELPT 32
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase
CV2896 {Chromobacterium violaceum [TaxId: 536]}
Length = 114
Score = 25.0 bits (54), Expect = 4.4
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 68 FLALDLGGTNFRVILM 83
+ +D GGT R+ L
Sbjct: 6 LIGVDGGGTGTRIRLH 21
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 252
Score = 24.7 bits (53), Expect = 9.2
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 64 EQGQFLALDLGGTNFRVILMHLKKGLV 90
E+ +ALD G T+ R ++M ++
Sbjct: 1 EKKYIVALDQGTTSSRAVVMDHDANII 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.419
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 764,349
Number of extensions: 35170
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 32
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)