BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15537
(80 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BDG|A Chain A, Hexokinase From Schistosoma Mansoni Complexed With Glucose
Length = 451
Score = 65.5 bits (158), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 6 GTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKT-FRLLLAEDGSGKGA 64
G A ++RRI+R ++T+ VDGSLYK+HP+ + + L P T F L L+EDGSGKGA
Sbjct: 381 GIACILRRINRSEVTVGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRLSEDGSGKGA 440
Query: 65 GLASA 69
+A
Sbjct: 441 AAIAA 445
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 849 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 908
Query: 72 LKL 74
++L
Sbjct: 909 VRL 911
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 20 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLG 75
T+ VDGSLYK HP+ K ++ LVP+ R LL+E GSGKGA + +A+A +L
Sbjct: 409 TVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGKGAAMVTAVAYRLA 464
>pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
Length = 917
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 849 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 908
Query: 72 LKL 74
++L
Sbjct: 909 VRL 911
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 20 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLG 75
T+ VDGSLYK HP+ K ++ LVP+ R LL+E GSGKGA + +A+A +L
Sbjct: 409 TVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGKGAAMVTAVAYRLA 464
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 849 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 908
Query: 72 LKL 74
++L
Sbjct: 909 VRL 911
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 20 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLG 75
T+ VDGSLYK HP+ K ++ LVP+ R LL+E GSGKGA + +A+A +L
Sbjct: 409 TVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGKGAAMVTAVAYRLA 464
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 849 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 908
Query: 72 LKL 74
++L
Sbjct: 909 VRL 911
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 20 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLG 75
T+ VDGSLYK HP+ K ++ LVP+ R LL+E GSGKGA + +A+A +L
Sbjct: 409 TVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGKGAAMVTAVAYRLA 464
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 918
Score = 62.4 bits (150), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R +D ++T+ VDG+LYK HP + + ++ L P T LL+EDGSGKGA L +A+
Sbjct: 849 RGLDHLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCTVSFLLSEDGSGKGAALITAVG 908
Query: 72 LKL 74
++L
Sbjct: 909 VRL 911
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 20 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLG 75
T+ VDGSLYK HP+ K ++ LVP+ R LL+E G+GKGA + +A+A +L
Sbjct: 409 TVGVDGSLYKMHPQYSRRFHKTLRRLVPDSDVRFLLSESGTGKGAAMVTAVAYRLA 464
>pdb|2NZT|A Chain A, Crystal Structure Of Human Hexokinase Ii
pdb|2NZT|B Chain B, Crystal Structure Of Human Hexokinase Ii
Length = 902
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 20 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLG 75
TI VDGS+YK HP L K ++ LVP R L +EDGSGKGA + +A+A +L
Sbjct: 395 TIGVDGSVYKKHPHFAKRLHKTVRRLVPGCDVRFLRSEDGSGKGAAMVTAVAYRLA 450
Score = 56.2 bits (134), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 6 GTAVLVRRI------DRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDG 59
G A +V RI D +T+ VDG+LYK HP + + ++ L P L +EDG
Sbjct: 823 GMAAVVDRIRENRGLDALKVTVGVDGTLYKLHPHFAKVMHETVKDLAPKCDVSFLQSEDG 882
Query: 60 SGKGAGLASAIALKL 74
SGKGA L +A+A ++
Sbjct: 883 SGKGAALITAVACRI 897
>pdb|3HM8|A Chain A, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|B Chain B, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|C Chain C, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|D Chain D, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
Length = 445
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 6 GTAVLVRRIDRDD------ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDG 59
G A +V +I + +++ VDG+LYK HPR + ++ L P L +EDG
Sbjct: 366 GVAAVVEKIRENRGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCVVTFLQSEDG 425
Query: 60 SGKGAGLASAIALKLG 75
SGKGA L +A+A +L
Sbjct: 426 SGKGAALVTAVACRLA 441
>pdb|1V4T|A Chain A, Crystal Structure Of Human Glucokinase
pdb|3H1V|X Chain X, Human Glucokinase In Complex With A Synthetic Activator
Length = 451
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R D IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A
Sbjct: 383 RSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVA 442
Query: 72 LK 73
K
Sbjct: 443 CK 444
>pdb|1V4S|A Chain A, Crystal Structure Of Human Glucokinase
pdb|3VEY|A Chain A, Glucokinase In Complex With Glucose And Atpgs
Length = 455
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R D IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A
Sbjct: 387 RSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVA 446
Query: 72 LK 73
K
Sbjct: 447 CK 448
>pdb|4DCH|A Chain A, Insights Into Glucokinase Activation Mechanism:
Observation Of Multiple Distinct Protein Conformations
Length = 473
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R D IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A
Sbjct: 397 RSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVA 456
Query: 72 LK 73
K
Sbjct: 457 CK 458
>pdb|3S41|A Chain A, Glucokinase In Complex With Activator And Glucose
pdb|4DHY|A Chain A, Crystal Structure Of Human Glucokinase In Complex With
Glucose And Activator
Length = 469
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R D IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A
Sbjct: 401 RSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVA 460
Query: 72 LK 73
K
Sbjct: 461 CK 462
>pdb|3IMX|A Chain A, Crystal Structure Of Human Glucokinase In Complex With A
Synthetic Activator
Length = 455
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R D IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A
Sbjct: 387 RSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVA 446
Query: 72 LK 73
K
Sbjct: 447 CK 448
>pdb|3FR0|A Chain A, Human Glucokinase In Complex With 2-Amino Benzamide
Activator
pdb|3A0I|X Chain X, Human Glucokinase In Complex With A Synthetic Activator
pdb|3GOI|A Chain A, Human Glucokinase In Complex With A Synthetic Activator
Length = 455
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R D IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A
Sbjct: 387 RSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVA 446
Query: 72 LK 73
K
Sbjct: 447 CK 448
>pdb|3F9M|A Chain A, Human Pancreatic Glucokinase In Complex With Glucose And
Activator Showing A Mobile Flap
pdb|3FGU|A Chain A, Catalytic Complex Of Human Glucokinase
pdb|3ID8|A Chain A, Ternary Complex Of Human Pancreatic Glucokinase
Crystallized With Activator, Glucose And Amp-Pnp
pdb|3IDH|A Chain A, Human Pancreatic Glucokinase In Complex With Glucose
pdb|3VEV|A Chain A, Glucokinase In Complex With An Activator And Glucose
pdb|3VF6|A Chain A, Glucokinase In Complex With Glucose And Activator
Length = 470
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R D IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A
Sbjct: 402 RSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVA 461
Query: 72 LK 73
K
Sbjct: 462 CK 463
>pdb|3QIC|A Chain A, The Structure Of Human Glucokinase E339k Mutation
Length = 470
Score = 52.4 bits (124), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R D IT+ VDG +YK HP K ++ L P+ + +E+GSG+GA L SA+A
Sbjct: 402 RSEDVMRITVGVDGXVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVA 461
Query: 72 LK 73
K
Sbjct: 462 CK 463
>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
Glucose
Length = 485
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 21 IAVDGSLYKYHPRLKHWLQKYIQLL------VPNKTFRLLLAEDGSGKGAGLASAIALK 73
IA DGS+Y +P K K ++ + ++ AEDGSG GA + +A++ K
Sbjct: 414 IAADGSVYNKYPGFKEAAAKGLRDIYGWTGDASKDPITIVPAEDGSGAGAAVIAALSEK 472
>pdb|3O08|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O08|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O1B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Ii
pdb|3O1W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O1W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O4W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O4W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O5B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O5B|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O6W|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O6W|B Chain B, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O80|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Ix
(Open State)
pdb|3O8M|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Xi
With Glucose Bound (Closed State)
Length = 485
Score = 28.9 bits (63), Expect = 0.81, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 21 IAVDGSLYKYHPRLKHWLQKYIQLL----------VPNKTFRLLLAEDGSGKGAGLASAI 70
IA DGS++ +P K +K Q L + + +L+ AEDGSG GA + + +
Sbjct: 413 IAADGSVFNRYPGYK---EKAAQALKDIYNWDVEKMEDHPIQLVAAEDGSGVGAAIIACL 469
Query: 71 ALK 73
K
Sbjct: 470 TQK 472
>pdb|2NTY|A Chain A, Rop4-Gdp-Prone8
pdb|2NTY|B Chain B, Rop4-Gdp-Prone8
pdb|2WBL|A Chain A, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
pdb|2WBL|B Chain B, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
Length = 365
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 45 LVPNKTFRLLLAEDGSGKGAGLASAIAL 72
++ ++ +LLL ED SG G G++SA+AL
Sbjct: 13 MMKDRFAKLLLGEDMSGGGKGVSSALAL 40
>pdb|2ODR|D Chain D, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 685
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 27 LYKYHPRLKHWLQ 39
+Y YHP+LK WL+
Sbjct: 301 VYAYHPKLKEWLE 313
>pdb|2ODR|B Chain B, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 648
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 27 LYKYHPRLKHWLQ 39
+Y YHP+LK WL+
Sbjct: 301 VYAYHPKLKEWLE 313
>pdb|2ODR|A Chain A, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 665
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 27 LYKYHPRLKHWLQ 39
+Y YHP+LK WL+
Sbjct: 301 VYAYHPKLKEWLE 313
>pdb|2ODR|C Chain C, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 701
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 27 LYKYHPRLKHWLQ 39
+Y YHP+LK WL+
Sbjct: 301 VYAYHPKLKEWLE 313
>pdb|2UY2|A Chain A, Sccts1_apo Crystal Structure
pdb|2UY3|A Chain A, Sccts1_8-Chlorotheophylline Crystal Structure
pdb|2UY4|A Chain A, Sccts1_acetazolamide Crystal Structure
pdb|2UY5|A Chain A, Sccts1_kinetin Crystal Structure
Length = 294
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 37 WLQKYIQLLVPNKTFRLLLAEDGSGKGAG 65
WL Y Q + PNK +L L GS AG
Sbjct: 208 WL-TYAQTVSPNKNIKLFLGLPGSASAAG 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,310,603
Number of Sequences: 62578
Number of extensions: 82911
Number of successful extensions: 270
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 32
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)