RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15537
(80 letters)
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase,
structural genomics consortium, SGC, A enzyme,
ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo
sapiens}
Length = 445
Score = 75.5 bits (185), Expect = 4e-18
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R ++ +++ VDG+LYK HPR + ++ L P L +EDGSGKGA L +A+A
Sbjct: 378 RGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCVVTFLQSEDGSGKGAALVTAVA 437
Query: 72 LKL 74
+L
Sbjct: 438 CRL 440
>1cza_N Hexokinase type I; structurally homologous domains, transferase;
HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3
c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A*
1hkc_A* 1bg3_A* 2nzt_A*
Length = 917
Score = 74.4 bits (182), Expect = 1e-17
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 849 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 908
Query: 72 LKL 74
++L
Sbjct: 909 VRL 911
Score = 45.5 bits (107), Expect = 2e-07
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 4 AQGTAVLVRRIDRDD------ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAE 57
A ++ R+ + T+ VDGSLYK HP+ K ++ LVP+ R LL+E
Sbjct: 387 AATLGAILNRLRDNKGTPRLRTTVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSE 446
Query: 58 DGSGK 62
GSGK
Sbjct: 447 SGSGK 451
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus,
mutation, glycolysis, nucleotide-binding, transfera;
HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A*
3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A*
3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X*
1v4t_A*
Length = 470
Score = 74.0 bits (181), Expect = 2e-17
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 15 DRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKL 74
D IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 405 DVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACKK 464
Query: 75 GA 76
Sbjct: 465 AC 466
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma
mansoni} SCOP: c.55.1.3 c.55.1.3
Length = 451
Score = 70.4 bits (172), Expect = 3e-16
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 6 GTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVP-NKTFRLLLAEDGSGKGA 64
G A ++RRI+R ++T+ VDGSLYK+HP+ + + L P N F L L+EDGSGKGA
Sbjct: 381 GIACILRRINRSEVTVGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRLSEDGSGKGA 440
Query: 65 GLASAIALK 73
+A +
Sbjct: 441 AAIAASCTR 449
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression
binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A
{Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A*
3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Length = 485
Score = 67.0 bits (163), Expect = 4e-15
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 4 AQGTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLV-------PNKTFRLLLA 56
G + + + IA DGS++ +P K + ++ + + +L+ A
Sbjct: 396 VCGVSAICDKRGYKTAHIAADGSVFNRYPGYKEKAAQALKDIYNWDVEKMEDHPIQLVAA 455
Query: 57 EDGSGKGAGLASAIALK 73
EDGSG GA + + + K
Sbjct: 456 EDGSGVGAAIIACLTQK 472
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG;
2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB:
1hkg_A
Length = 457
Score = 60.9 bits (147), Expect = 7e-13
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 10 LVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLV-------PNKTFRLLLAEDGSGK 62
+ ++ IA GS Y + +K + A DG G
Sbjct: 376 ICQKKGYSSGHIAAXGSXRSY-SGFSXNSATXNXNIYGWPQSAXXSKPIXITPAIDGXGA 434
Query: 63 GAGLASAIA 71
+ + +IA
Sbjct: 435 ASXVIXSIA 443
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange
factor, signaling protein; HET: MSE; 2.20A {Arabidopsis
thaliana} PDB: 2nty_A* 2wbl_A
Length = 365
Score = 27.0 bits (59), Expect = 0.71
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 52 RLLLAEDGSGKGAGLASAIAL 72
+LLL ED SG G G++SA+AL
Sbjct: 20 KLLLGEDMSGGGKGVSSALAL 40
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate;
GTP-dependent, signaling protein, lyase; 2.30A
{Corynebacterium glutamicum}
Length = 610
Score = 26.6 bits (58), Expect = 0.99
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 22 AVDGSLYKYHPRLKHWLQKYIQLLVPNKTF 51
+ G + L +W+ ++L P
Sbjct: 8 GLQGEAPTKNKELLNWIADAVELFQPEAVV 37
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 26.3 bits (57), Expect = 1.00
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 11 VRRIDRDDITIAV 23
+ R+ RDDITI V
Sbjct: 439 LARMYRDDITIIV 451
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F,
structural GE oxidoreductase; HET: NDP; 1.60A
{Escherichia coli} SCOP: c.1.7.1
Length = 346
Score = 26.0 bits (58), Expect = 1.4
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 13/35 (37%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLK---------HW 37
+ +DR +I A+ SL RL+ HW
Sbjct: 103 QALDRKNIREALHDSL----KRLQTDYLDLYQVHW 133
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 2.9
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 37/79 (46%)
Query: 29 KYHPR---LKHWLQK--------Y-------------IQL-----------LVPNKTFRL 53
K + + WL+ Y IQL P +
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 54 LLAEDGSGKGAGLASAIAL 72
L +G GL +A+A+
Sbjct: 267 LKG--ATGHSQGLVTAVAI 283
>1bo4_A Protein (serratia marcescens aminoglycoside-3-N-
acetyltransferase); eubacterial aminoglyco resistance,
GCN5-related N-acetyltransferase; HET: SPD COA; 2.30A
{Serratia marcescens} SCOP: d.108.1.1
Length = 168
Score = 24.0 bits (52), Expect = 7.0
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 1 MTTAQGTAVLVRRIDRDDI--TIAVDGSLYKYHPRLKHWL-----QKYIQLLVPNKTFRL 53
+ + + R+ D + A + + + Y+ L+ +KTF
Sbjct: 19 LGGSSMGIIRTCRLGPDQVKSMRAALDLFGREFGDVATYSQHQPDSDYLGNLLRSKTFIA 78
Query: 54 LLAEDGSGKGAGLASA 69
L A D G +A
Sbjct: 79 LAAFDQ-EAVVGALAA 93
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 23.9 bits (52), Expect = 7.6
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Query: 59 GSGKGAGLASAI-ALKLGA 76
GSG GAGLA+A+ A GA
Sbjct: 133 GSG-GAGLAAAVSARDAGA 150
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP;
transcription, beta-propeller; HET: PGE PG4 MES 2PE;
2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Length = 795
Score = 23.8 bits (52), Expect = 7.6
Identities = 3/39 (7%), Positives = 10/39 (25%)
Query: 21 IAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDG 59
I+ L + + ++ + L +
Sbjct: 146 ISTPEGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGD 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.395
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,256,063
Number of extensions: 66260
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 19
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)