RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15537
         (80 letters)



>d1czan4 c.55.1.3 (N:671-913) Mammalian type I hexokinase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 243

 Score = 78.8 bits (194), Expect = 2e-20
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query: 12  RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
           R +DR ++T+ VDG+LYK HP     + + ++ L P      LL+EDGSGKGA L +A+ 
Sbjct: 179 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 238

Query: 72  LKL 74
           ++L
Sbjct: 239 VRL 241


>d1czan2 c.55.1.3 (N:223-465) Mammalian type I hexokinase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 243

 Score = 78.4 bits (193), Expect = 3e-20
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 4   AQGTAVLVRRI------DRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAE 57
           A     ++ R+       R   T+ VDGSLYK HP+      K ++ LVP+   R LL+E
Sbjct: 165 AATLGAILNRLRDNKGTPRLRTTVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSE 224

Query: 58  DGSGKGAGLASAIALKL 74
            GSGKGA + +A+A +L
Sbjct: 225 SGSGKGAAMVTAVAYRL 241


>d1bdga2 c.55.1.3 (A:223-460) Hexokinase {Blood fluke (Schistosoma
           mansoni) [TaxId: 6183]}
          Length = 237

 Score = 76.0 bits (187), Expect = 2e-19
 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 4   AQGTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVP-NKTFRLLLAEDGSGK 62
             G A ++RRI+R ++T+ VDGSLYK+HP+    +   +  L P N  F L L+EDGSGK
Sbjct: 169 GAGIACILRRINRSEVTVGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRLSEDGSGK 228

Query: 63  GAGLASA 69
           GA   +A
Sbjct: 229 GAAAIAA 235


>d1v4sa2 c.55.1.3 (A:219-461) Glucokinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 243

 Score = 76.1 bits (187), Expect = 3e-19
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 4   AQGTAVLVRRIDRD------DITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAE 57
           + G A ++ R+          IT+ VDGS+YK HP  K      ++ L P+     + +E
Sbjct: 165 SAGLAGVINRMRESRSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESE 224

Query: 58  DGSGKGAGLASAIALKL 74
           +GSG+GA L SA+A K 
Sbjct: 225 EGSGRGAALVSAVACKK 241


>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast
           (Saccharomyces cerevisiae), pII [TaxId: 4932]}
          Length = 262

 Score = 75.3 bits (185), Expect = 7e-19
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 3   TAQGTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLV-------PNKTFRLLL 55
           +  G A + ++       IA DGS+Y  +P  K      ++ +         +   +++ 
Sbjct: 172 SVCGIAAICQKRGYKTGHIAADGSVYNRYPGFKEKAANALKDIYGWTQTSLDDYPIKIVP 231

Query: 56  AEDGSGKGAGLASAIALKL 74
           AEDGSG GA + +A+A K 
Sbjct: 232 AEDGSGAGAAVIAALAQKR 250


>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
           [TaxId: 562]}
          Length = 208

 Score = 24.4 bits (52), Expect = 2.0
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 13  RIDRDDITIAVDGSLYKYHPRLKHWLQKYIQL 44
           R+   D  I  +G+       +      Y+QL
Sbjct: 166 RLAVADDVIDNNGAPDAIASDVARLHAHYLQL 197


>d1qmja_ b.29.1.3 (A:) Galectin-1 {Chicken (Gallus gallus) [TaxId:
           9031]}
          Length = 132

 Score = 24.1 bits (52), Expect = 2.1
 Identities = 5/32 (15%), Positives = 14/32 (43%)

Query: 13  RIDRDDITIAVDGSLYKYHPRLKHWLQKYIQL 44
             D  ++ + V    +++  RL     +Y+ +
Sbjct: 89  SFDAAEVKVKVPEVEFEFPNRLGMEKIQYLAV 120


>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
          carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 250

 Score = 23.2 bits (50), Expect = 4.9
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 23 VDGSLYKYHPRLKHWLQKYIQLLVPNK 49
          V GSL      ++ +L+   +L  P+ 
Sbjct: 7  VQGSLDSLPQAVREFLENNAELCQPDH 33


>d2dexx1 b.2.9.1 (X:113-293) Peptidylarginine deiminase Pad4, middle
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 181

 Score = 22.9 bits (49), Expect = 6.1
 Identities = 5/33 (15%), Positives = 8/33 (24%)

Query: 30  YHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGK 62
           +         K   +L P      L+   G   
Sbjct: 102 FQATRGKLSSKCSVVLGPKWPSHYLMVPGGKHN 134


>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40,
          N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 87

 Score = 21.6 bits (46), Expect = 10.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 44 LLVPNKTFRLLLAEDGS 60
            +P    RL L EDG+
Sbjct: 40 FQLPMPGSRLCLYEDGT 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 289,632
Number of extensions: 11772
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 11
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)