Query psy15539
Match_columns 333
No_of_seqs 272 out of 2975
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 23:54:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 6.9E-29 2.4E-33 228.9 24.0 262 65-332 8-304 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.9 4.3E-24 1.5E-28 194.5 15.7 179 66-248 25-213 (451)
3 3o7q_A L-fucose-proton symport 99.9 3.8E-23 1.3E-27 187.6 19.4 175 69-246 26-235 (438)
4 2gfp_A EMRD, multidrug resista 99.9 9.5E-23 3.3E-27 181.4 13.5 171 73-246 4-179 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.8 9.4E-19 3.2E-23 161.1 20.2 139 102-240 49-194 (491)
6 2xut_A Proton/peptide symporte 99.7 5.2E-17 1.8E-21 150.7 15.4 138 104-241 51-197 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.6 2.3E-14 7.9E-19 130.0 15.0 153 87-241 270-432 (451)
8 2cfq_A Lactose permease; trans 99.5 7.7E-16 2.6E-20 138.8 0.9 156 87-244 25-189 (417)
9 4gc0_A D-xylose-proton symport 99.5 2E-13 6.7E-18 125.4 14.3 154 90-247 298-468 (491)
10 2cfq_A Lactose permease; trans 99.5 3.2E-13 1.1E-17 121.6 11.2 143 104-246 256-404 (417)
11 3o7q_A L-fucose-proton symport 99.4 6.9E-13 2.3E-17 119.9 12.6 146 90-240 279-430 (438)
12 4aps_A DI-OR tripeptide H+ sym 99.3 1.5E-12 5.2E-17 119.5 8.0 149 90-240 304-469 (491)
13 2gfp_A EMRD, multidrug resista 99.1 8.7E-11 3E-15 103.9 6.4 127 88-219 218-349 (375)
14 2xut_A Proton/peptide symporte 98.9 3E-09 1E-13 98.3 7.7 112 108-219 336-464 (524)
15 2g9p_A Antimicrobial peptide l 62.0 3.3 0.00011 19.3 1.0 14 126-139 2-15 (26)
16 4dve_A Biotin transporter BIOY 43.6 65 0.0022 24.9 6.4 25 113-137 99-123 (198)
17 3arc_T Photosystem II reaction 32.8 51 0.0017 17.0 2.7 10 238-247 19-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=6.9e-29 Score=228.87 Aligned_cols=262 Identities=25% Similarity=0.375 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCC-----cccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHH
Q psy15539 65 ITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGE-----YPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT 139 (333)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~ 139 (333)
+..+...++++++.+..|++.++++..+|.+.++. .+.+.+....+++.+++.+|.++|++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34566667778888999999999888877766540 0113344567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH------------------HHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHH
Q psy15539 140 MLLLAVPTLVGWGLII------------------WSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYF 201 (333)
Q Consensus 140 l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~ 201 (333)
++++.+++.+++++++ +++|++.++++|++.|++.|+..+..+.+++|+.|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999988 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCC
Q psy15539 202 QLQCTAGILFVYAVGSWA------------SVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSE 269 (333)
Q Consensus 202 ~~~~~~g~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (333)
+.+..+|.++++.++... +|+..+.+..+..++.++..+++||+|+|+..+++.+++++.+++.+..+
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 999999999988887644 68888888888888888888899999999999999999999988876432
Q ss_pred cchHHHHHHHHHHHHhhccCccchHhhhcChhhHHHHHHHHHHHHHHhhcchhhhhhchhccc
Q psy15539 270 YDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF 332 (333)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 332 (333)
...++. .+.++..+++ ++.......++. ++..+.+...+++++.+.+.+.+|.|+++
T Consensus 248 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (491)
T 4gc0_A 248 LATQAV-QEIKHSLDHG-RKTGGRLLMFGV----GVIVIGVMLSIFQQFVGINVVLYYAPEVF 304 (491)
T ss_dssp HHHHHH-HHHHHHHHHH-HHHTTHHHHSCC----THHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhHHHH-HHHHHHHHhh-hhhhhHHHHhcc----cHHHHHHHHHHHHHHhhhhHHHhcchHHH
Confidence 222111 1111111111 111112233332 34567777788888999999999988764
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.91 E-value=4.3e-24 Score=194.47 Aligned_cols=179 Identities=13% Similarity=0.032 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q psy15539 66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV 145 (333)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 145 (333)
.++..+..+.+..+..+.......+.+|.+.++ + .+..+.+++.+++.++..++++++|+++||+|||++++++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ---G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS---T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 345556666667777777777888889999988 8 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----HhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH--
Q psy15539 146 PTLVGWGLIIW----SQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-- 219 (333)
Q Consensus 146 ~~~~~~~~~~~----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-- 219 (333)
+.+++.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999998775
Q ss_pred --H-HHHHHHHHHHHHHHH-HHHhhcccCChHH
Q psy15539 220 --S-VYGLSIICALLPIFF-VGLMLLMPESPQF 248 (333)
Q Consensus 220 --~-~~~~~~~~~~~~~~~-~~~~~~~~e~~~~ 248 (333)
+ |++.+++.+++.++. ++..+++||+|+.
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQS 213 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence 6 999999988877664 4445678887753
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.91 E-value=3.8e-23 Score=187.57 Aligned_cols=175 Identities=13% Similarity=0.095 Sum_probs=151.7
Q ss_pred HHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q psy15539 69 MAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL 148 (333)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~ 148 (333)
.....+.+..+..++......+.+|.+.++ +|.+..+.+++.+++.++..++.++.|+++||+|||++++++.++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQA---FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 344455555566667777778888999888 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---HHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHHH-----
Q psy15539 149 VGWGLI---IWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWAS----- 220 (333)
Q Consensus 149 ~~~~~~---~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~----- 220 (333)
++.+++ .++++++.++++|++.|++.+...+...++++|++|+++|++++++.+.+..+|.++++.+++++.
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999 788999999999999999999999999999999999999999999999999999999999988773
Q ss_pred -------------------------HHHHHHHHHHHHHHHHHHhhc--ccCCh
Q psy15539 221 -------------------------VYGLSIICALLPIFFVGLMLL--MPESP 246 (333)
Q Consensus 221 -------------------------~~~~~~~~~~~~~~~~~~~~~--~~e~~ 246 (333)
|++.+++.+++.++..+..++ .||++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~ 235 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ 235 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 999998777766654444333 35543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=9.5e-23 Score=181.35 Aligned_cols=171 Identities=14% Similarity=0.105 Sum_probs=152.6
Q ss_pred HHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q psy15539 73 TATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG 152 (333)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 152 (333)
.+.+..+..++......+.+|.+.++ +|.+..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD---LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT---SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 34455555666667777888988888 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHH
Q psy15539 153 LIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIIC 228 (333)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~ 228 (333)
++.++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..++|.+++++ +|++.+++.
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876 899999988
Q ss_pred HHHHHHHHH-HhhcccCCh
Q psy15539 229 ALLPIFFVG-LMLLMPESP 246 (333)
Q Consensus 229 ~~~~~~~~~-~~~~~~e~~ 246 (333)
+++.++..+ ..+++||++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHCcccC
Confidence 887766554 455677765
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.82 E-value=9.4e-19 Score=161.08 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=127.3
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhh
Q psy15539 102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVV 180 (333)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 180 (333)
+|.+..+.+++.+++.++..+++++.|+++|| +|||+++.++.++.+++.++++++++.+.++++|++.|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 89999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCcc--hhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhh
Q psy15539 181 VPMYTAEIAETEI--RGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLML 240 (333)
Q Consensus 181 ~~~~~~e~~~~~~--rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 240 (333)
..++++|++|+++ |+.+.++++.+..+|..++|.+++++ +|++.|++.++..++.++..+
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 77788889999999999999998876 799999988776665544433
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.73 E-value=5.2e-17 Score=150.71 Aligned_cols=138 Identities=19% Similarity=0.204 Sum_probs=125.4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhhhhh
Q psy15539 104 VTESDLSFIGSSMALGAVFGSPVVGNLVDTV-GRKNTMLLLAVPTLVGWGLIIWSQ-SVIMFCAGRLLTGFGGGSFAVVV 181 (333)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~ 181 (333)
.+..+.+++.+++.++..++.++.|+++||+ |||+++.++.++.+++.+++.+++ +.+.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999998 99999999999999999999999
Q ss_pred hhhhcccCCCcchhhHHHH---HHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhc
Q psy15539 182 PMYTAEIAETEIRGTLGTY---FQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLMLL 241 (333)
Q Consensus 182 ~~~~~e~~~~~~rg~~~~~---~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 241 (333)
.+++.|++|+++|+++.+. .+.+..+|.+++|.+++++ +|++.|++.+++.++.++..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 8889999999999998876 7999998888777665544443
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.58 E-value=2.3e-14 Score=130.03 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=126.8
Q ss_pred cchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhcc--chhHHHHHHHHHHH-HHHHHHHHH--hhHH
Q psy15539 87 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV--GRKNTMLLLAVPTL-VGWGLIIWS--QSVI 161 (333)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~ 161 (333)
......|.+.++ .+|.+..+.+++.+...++.+++.++.|++.||+ |||+.+.++.++.. ++.++..+. .+.+
T Consensus 270 ~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T 1pw4_A 270 GILDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT 347 (451)
T ss_dssp HHHHHHHHHBTT--BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHH
T ss_pred HHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 334456667665 3789999999999999999999999999999999 99999888877766 666655554 3677
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHH-HHHHHHHHhHHH----HHHHHHHHHHHHHHHHH
Q psy15539 162 MFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTA-GILFVYAVGSWA----SVYGLSIICALLPIFFV 236 (333)
Q Consensus 162 ~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~-g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 236 (333)
.+.++.++.|++.+...+....++.|.+|++.||++.++.+....+ |..+++.+.+++ +|+..+++.+++.++..
T Consensus 348 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 427 (451)
T 1pw4_A 348 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 427 (451)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 7788888999998888888889999999999999999999999999 999999998876 67888888877777665
Q ss_pred HHhhc
Q psy15539 237 GLMLL 241 (333)
Q Consensus 237 ~~~~~ 241 (333)
+..++
T Consensus 428 ~~~~~ 432 (451)
T 1pw4_A 428 ILLIV 432 (451)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.54 E-value=7.7e-16 Score=138.83 Aligned_cols=156 Identities=13% Similarity=0.056 Sum_probs=103.1
Q ss_pred cchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH---HHHHhhHH-H
Q psy15539 87 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGL---IIWSQSVI-M 162 (333)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~-~ 162 (333)
...+.+|.+.++ ++|.+..+.+++.+.+.++..++++++|+++||+|||++++++.++.+++... ..+..... .
T Consensus 25 ~~~~~~~~~l~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (417)
T 2cfq_A 25 AYFPFFPIWLHD--INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYN 102 (417)
T ss_dssp HHTTTHHHHHHT--TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556766544 28999999999999999999999999999999999999999888776543221 12222211 2
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhcccCCC--cchhhHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHH
Q psy15539 163 FCAGRLLTGFGGGSFAVVVPMYTAEIAET--EIRGTLGTYFQLQCTAGILFVYAVGSWA---SVYGLSIICALLPIFFVG 237 (333)
Q Consensus 163 ~~~~~~l~G~~~g~~~~~~~~~~~e~~~~--~~rg~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 237 (333)
+...+++.|++.+..++.....+.++.++ +.|+...+.......+|..++|.+++++ +|+..|++.++..++.++
T Consensus 103 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~ 182 (417)
T 2cfq_A 103 ILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAV 182 (417)
T ss_dssp CCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence 33455566655555444444444444433 3456666666666777788888887766 588888877666544444
Q ss_pred HhhcccC
Q psy15539 238 LMLLMPE 244 (333)
Q Consensus 238 ~~~~~~e 244 (333)
..++.++
T Consensus 183 ~~~~~~~ 189 (417)
T 2cfq_A 183 LLFFAKT 189 (417)
T ss_dssp HSCSSCC
T ss_pred HHHHcCc
Confidence 4444443
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.50 E-value=2e-13 Score=125.43 Aligned_cols=154 Identities=13% Similarity=-0.001 Sum_probs=108.5
Q ss_pred hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh-----hHHHHH
Q psy15539 90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ-----SVIMFC 164 (333)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~ 164 (333)
...|.+.+. .+.+............+...++.++.+++.||+|||+.++.+....+++.+..+... +...+.
T Consensus 298 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 374 (491)
T 4gc0_A 298 YYAPEVFKT---LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 374 (491)
T ss_dssp HHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hcchHHHHh---cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence 345556555 667767777777888889999999999999999999999999888888777665431 222222
Q ss_pred HH-HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHH
Q psy15539 165 AG-RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----------SVYGLSIICALLPI 233 (333)
Q Consensus 165 ~~-~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~ 233 (333)
.. .+..+++ .+..++.+.+.+|.+|++.|+++.++......+|..+++.+...+ ++...+++.+++++
T Consensus 375 ~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~ 453 (491)
T 4gc0_A 375 SMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 453 (491)
T ss_dssp HHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 22 2222222 234467788999999999999999998888888888776665433 23345666666666
Q ss_pred HH-HHHhhcccCChH
Q psy15539 234 FF-VGLMLLMPESPQ 247 (333)
Q Consensus 234 ~~-~~~~~~~~e~~~ 247 (333)
+. ++.++++||++.
T Consensus 454 ~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 454 LAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHCCCCTT
T ss_pred HHHHHHHheecCCCC
Confidence 54 445678999953
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.45 E-value=3.2e-13 Score=121.63 Aligned_cols=143 Identities=13% Similarity=0.089 Sum_probs=114.3
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhh
Q psy15539 104 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPM 183 (333)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~ 183 (333)
.+....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.+++..++.+++.+...+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888899999999999999999999999888888887777766677777777777788877767777788
Q ss_pred hhcccCCCcchhhHHHH-HHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHH-hhcccCCh
Q psy15539 184 YTAEIAETEIRGTLGTY-FQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGL-MLLMPESP 246 (333)
Q Consensus 184 ~~~e~~~~~~rg~~~~~-~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~e~~ 246 (333)
+++|.+|++.||++.+. ++....+|..++|.+++++ ++...|.+.++++++..+. +++.||.+
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999998 5888889999999888866 6677777777777665544 34556554
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.44 E-value=6.9e-13 Score=119.89 Aligned_cols=146 Identities=9% Similarity=-0.097 Sum_probs=115.8
Q ss_pred hhhhhh-hcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy15539 90 PAGDRL-IAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRL 168 (333)
Q Consensus 90 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (333)
...|.+ .++ .+|.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++.+++.++..+.++...++. .+
T Consensus 279 ~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 355 (438)
T 3o7q_A 279 SYLIRYAVEE--IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LT 355 (438)
T ss_dssp HHHHHHHHHH--STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HH
T ss_pred HHHHHHhhhc--cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HH
Confidence 445666 555 25999999999999999999999999999999999999999999999988888888777665444 48
Q ss_pred HHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----H-HHHHHHHHHHHHHHHHHHhh
Q psy15539 169 LTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----S-VYGLSIICALLPIFFVGLML 240 (333)
Q Consensus 169 l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~ 240 (333)
+.|++.+..++...++..|.+|++ |+.+.++.. ...+|..++|.+.+++ + ++..+++.+++.++.++..+
T Consensus 356 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 356 LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999876 888888766 4558888888888776 4 66667665555444433333
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.34 E-value=1.5e-12 Score=119.51 Aligned_cols=149 Identities=11% Similarity=0.006 Sum_probs=113.6
Q ss_pred hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH-----HHHHHHHHHHHHHHHHh------
Q psy15539 90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML-----LLAVPTLVGWGLIIWSQ------ 158 (333)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~------ 158 (333)
..+|.+..+ ..+.+....+++.+...++..++.++.+++.||+|||+... ++.++.+++.++..+..
T Consensus 304 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (491)
T 4aps_A 304 VVLATFAAE--RVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTS 381 (491)
T ss_dssp THHHHHHHH--SCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCC
T ss_pred HHHHHHHHH--HhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 334445443 14555466777788888899999999999999999986654 67777777766666543
Q ss_pred ---hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHH
Q psy15539 159 ---SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA---SVYGLSIICALLP 232 (333)
Q Consensus 159 ---~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~ 232 (333)
+.+.+++..++.|++.+...+....++.|.+|++.||++.++.+....+|..+++.+.+++ ++...+.+.++++
T Consensus 382 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 461 (491)
T 4aps_A 382 GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGS 461 (491)
T ss_dssp TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 6677778889999999998999999999999999999999999999999999999998876 4455666666666
Q ss_pred HHHHHHhh
Q psy15539 233 IFFVGLML 240 (333)
Q Consensus 233 ~~~~~~~~ 240 (333)
++..+..+
T Consensus 462 ~~~~~~~~ 469 (491)
T 4aps_A 462 VVLGIVLV 469 (491)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65444433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.09 E-value=8.7e-11 Score=103.90 Aligned_cols=127 Identities=15% Similarity=0.080 Sum_probs=98.0
Q ss_pred chhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH-HHHHHH--HHHH--HhhHHH
Q psy15539 88 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP-TLVGWG--LIIW--SQSVIM 162 (333)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~ 162 (333)
.....|.+.++ .+|.++.+.+++.+...++..++.++.+++.||+|++. ..+..+ ..++.. .... ..+.+.
T Consensus 218 ~~~~~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (375)
T 2gfp_A 218 FEACSGVLMGA--VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWT 293 (375)
T ss_dssp HHHHCSCSSHH--HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHH
Confidence 33445655544 37888889999999999999999999999999998832 233322 222222 2222 236677
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539 163 FCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA 219 (333)
Q Consensus 163 ~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~ 219 (333)
+++..++.|++.+...+....++.|.+| ++||++.++.+....+|..+++.+.+.+
T Consensus 294 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 294 LLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp HHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999999999999999999998 8999999999999999999998887776
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.87 E-value=3e-09 Score=98.32 Aligned_cols=112 Identities=16% Similarity=0.149 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh----hccch----hHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHH
Q psy15539 108 DLSFIGSSMALGAVFGSPVVGNLV----DTVGR----KNTMLLLAVPTLVGWGLIIWS---------QSVIMFCAGRLLT 170 (333)
Q Consensus 108 ~~~~~~~~~~~~~~i~~~~~g~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~ 170 (333)
..+++.+...++..++.++.+++. +|.|+ ++.+.++.++.+++.++..+. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 356666666667777777776664 55543 245667777777777766653 2566777888999
Q ss_pred hhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539 171 GFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA 219 (333)
Q Consensus 171 G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~ 219 (333)
|++.+...+....++.|.+|++.||+++|+.+....+|..+++.+.+.+
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~ 464 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSV 464 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988765
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=62.03 E-value=3.3 Score=19.29 Aligned_cols=14 Identities=36% Similarity=0.731 Sum_probs=11.3
Q ss_pred HHHHhhhccchhHH
Q psy15539 126 VVGNLVDTVGRKNT 139 (333)
Q Consensus 126 ~~g~l~dr~Grr~~ 139 (333)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46789999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=43.64 E-value=65 Score=24.94 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchh
Q psy15539 113 GSSMALGAVFGSPVVGNLVDTVGRK 137 (333)
Q Consensus 113 ~~~~~~~~~i~~~~~g~l~dr~Grr 137 (333)
+..|.+|+.+++.+.|++.+|..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4556778888889999999987644
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=32.75 E-value=51 Score=16.97 Aligned_cols=10 Identities=20% Similarity=0.664 Sum_probs=6.1
Q ss_pred HhhcccCChH
Q psy15539 238 LMLLMPESPQ 247 (333)
Q Consensus 238 ~~~~~~e~~~ 247 (333)
...+++|+|+
T Consensus 19 FAI~FRePPr 28 (32)
T 3arc_T 19 FAIFFREPPR 28 (32)
T ss_dssp HHHHTSCCCC
T ss_pred HhhhhcCCCC
Confidence 3446678775
Done!