RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15539
(333 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 150 bits (382), Expect = 6e-42
Identities = 84/289 (29%), Positives = 140/289 (48%), Gaps = 35/289 (12%)
Query: 69 MAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESD---------LSFIGSSMALG 119
+AAL + G+ G I + + LI F S I S ++G
Sbjct: 4 VAALGGFLFGYDTGVIGAFLT-----LIKFFKRFGALTSIGACAASTVLSGLIVSIFSVG 58
Query: 120 AVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ--SVIMFCAGRLLTGFGGGSF 177
+ GS G L D GRK ++L+ V ++G L +++ S M GR++ G G G
Sbjct: 59 CLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGI 118
Query: 178 AVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSI----------- 226
+V+VPMY +EIA ++RG LG+ +QL T GIL +G GL+
Sbjct: 119 SVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIG-----LGLNKYSNSDGWRIPL 173
Query: 227 -ICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEK 285
+ + I + +L +PESP++ + K ++++A+ L RG D+D EI + ++SLE+
Sbjct: 174 GLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS-DVDQEIQEEKDSLER 232
Query: 286 ERSDKVPLM-QAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
+ + F ++ LL+G+ + QQ GINA+ +Y+ IF+
Sbjct: 233 SVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFE 281
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 134 bits (340), Expect = 7e-36
Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 29/296 (9%)
Query: 64 RITQYMAA---LTATIGGF-------IMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIG 113
T + A L A IGG ++G L PA + + S +
Sbjct: 20 GSTYWKVALLSLIAAIGGLMFGYDTGVIGGALAL--PAFEFKFTSANSDSYSSSLWGLVV 77
Query: 114 SSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS---QSVIMFCAGRLLT 170
S +G G+ G L D GRK ++L++A+ ++G L+ + SV M GR+L
Sbjct: 78 SIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLL 137
Query: 171 GFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSI---- 226
G G G + +VPMY +EIA +RG L + +QL T GIL Y GS ++
Sbjct: 138 GIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRI 197
Query: 227 ---ICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSL 283
+ + + +PESP++ + K RV++A++SL RG+ D E+ D +
Sbjct: 198 PLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTS-GEDKELLDELELI 256
Query: 284 EKERSDKVPLMQAF------STPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
+ +RS + +Q ST +R L +G+ + + QQF GINA+++Y+ IF+
Sbjct: 257 DIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE 312
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 89.8 bits (223), Expect = 7e-20
Identities = 78/321 (24%), Positives = 131/321 (40%), Gaps = 69/321 (21%)
Query: 60 QKAKRITQYMAALT--ATIGGFIMGTILGWTSPAGDRL-----IAGEYPFLVTESDLSFI 112
+ + Y+ ++T AT+GG + G S + L S L F
Sbjct: 1 MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFC 60
Query: 113 GSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLV------------------GWGLI 154
+S +G + G + G + GR++++ + AV + G
Sbjct: 61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGY- 119
Query: 155 IWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYA 214
V F R++ G G G +++ PMY AEIA IRG L ++ Q G L VY
Sbjct: 120 -----VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYF 174
Query: 215 VG---------------SWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAK 259
V W ++ I ALL F+ L+ +PE+P++ + + + +QA+
Sbjct: 175 VNYFIARSGDASWLNTDGWRYMFASEAIPALL---FLMLLYFVPETPRYLMSRGKQEQAE 231
Query: 260 ESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFI---- 315
L+ G+ + ++++SL+ R L L+ G+GV+ I
Sbjct: 232 GILRKIMGNT-LATQALQEIKHSLDHGRKTGGKL------------LMFGVGVIVIGVML 278
Query: 316 ---QQFGGINAVVFYTVKIFK 333
QQF GIN V++Y +IFK
Sbjct: 279 SVFQQFVGINVVLYYAPEIFK 299
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 73.1 bits (180), Expect = 2e-14
Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 3/171 (1%)
Query: 72 LTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLV 131
L +G F+ G G SPA L ++ S I S+ +LG GS + G L
Sbjct: 2 LLLFLGFFLSGLDRGLLSPA---LPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLS 58
Query: 132 DTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAET 191
D GR+ +LL + +G L+ ++ S+ + GR L G GGG+ AE
Sbjct: 59 DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118
Query: 192 EIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLM 242
+ RG F G L +G + L+ L+ L+
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169
Score = 52.3 bits (126), Expect = 1e-07
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 8/146 (5%)
Query: 102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP-TLVGWGLIIWSQSV 160
++ ++ + S LG + G+ + G L D +GR+ +LL+ + +G L+ + S+
Sbjct: 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265
Query: 161 IMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGT-LGTYFQLQCTAGILFVYAVG--- 216
+ LL GFG G + +E+A E RGT G + G L G
Sbjct: 266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL 325
Query: 217 ---SWASVYGLSIICALLPIFFVGLM 239
+ V+ + ALL + L+
Sbjct: 326 DTGGYGGVFLILAALALLAALLLLLL 351
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 70.8 bits (174), Expect = 2e-13
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 103 LVTESDLSFIGSSMA--------LGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI 154
+VTE DL + +G + GS V G L D GRK +LL + T V L
Sbjct: 115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLT 174
Query: 155 IWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGI----L 210
+S + +F RLL G G G V + E + R +GT Q+ + G+ L
Sbjct: 175 AFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPL 234
Query: 211 FVYAVGSWASVYGLS----IICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQ 263
Y + W + + LL +FV PESP++ + + R+++A + LQ
Sbjct: 235 VAYFIPDWRWLQLAVSLPTFLFFLL-SWFV------PESPRWLISQGRIEEALKILQ 284
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 63.6 bits (155), Expect = 2e-11
Identities = 37/198 (18%), Positives = 78/198 (39%), Gaps = 10/198 (5%)
Query: 76 IGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG 135
+ F+ G PA +A + ++ +++ + ++ +LG P+ G L D G
Sbjct: 3 LAAFLAGLGRSLLGPALPLYLAED--LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 136 RKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRG 195
R+ +L+ + +G L++++ S+ + R+L G GGG+ A+ E RG
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERG 120
Query: 196 TLGTYFQLQCTAGIL-------FVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQF 248
G + ++ W + + + I ALL + +LL P+
Sbjct: 121 RALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALL-AAVLAALLLPRPPPES 179
Query: 249 HLKKNRVKQAKESLQWFR 266
K + + ++
Sbjct: 180 KRPKPAEEAPAPLVPAWK 197
Score = 35.1 bits (81), Expect = 0.045
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 3/110 (2%)
Query: 105 TESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML---LLAVPTLVGWGLIIWSQSVI 161
+ + L G ++G L D +GR+ +L LL + +G L+ ++S +
Sbjct: 235 SALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSL 294
Query: 162 MFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILF 211
LL GFG G + +++A E RGT + + G
Sbjct: 295 WLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 58.8 bits (142), Expect = 1e-09
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 95 LIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL-LAVPTLVGWGL 153
L + E + +S +G + LG + G+ G L D +GRK +L+ L+V +
Sbjct: 190 LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAF-F 248
Query: 154 IIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVY 213
+ Q F RLL+GFG G +V Y AE E RG ++ + G ++
Sbjct: 249 SSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAA 308
Query: 214 AVGSWASV--YGLS----------------IICALLPIFFVGLMLLMPESPQFHLKKNRV 255
A+ +WA + YG S I+CA +F +G + MPESP+F L+ +
Sbjct: 309 AM-AWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKH 367
Query: 256 KQA 258
+A
Sbjct: 368 DEA 370
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 49.2 bits (118), Expect = 2e-07
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 5/134 (3%)
Query: 117 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGS 176
ALG + SP+ G L D GRK +L+ ++ + S ++ + R L GFG
Sbjct: 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAF 67
Query: 177 FAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYG-----LSIICALL 231
V A+I E RG G L +G + + + L
Sbjct: 68 ALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILA 127
Query: 232 PIFFVGLMLLMPES 245
F+ L L+PE+
Sbjct: 128 LAAFILLAFLLPET 141
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 49.7 bits (119), Expect = 8e-07
Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 15/210 (7%)
Query: 58 NQQKAKRITQYMAALTATIGGFIMG---TILGWTSPAGDRLIAGEYPFLVTESDLSFIGS 114
+Q R Q+ A + + + + G +G+ +PA I+ E + + L F+ S
Sbjct: 7 RKQPLSR-YQWRAIILSFLIMLMDGYDLAAMGFAAPA----ISAE--WGLDPVQLGFLFS 59
Query: 115 SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGG 174
+ +G FG+ G L D +GR+ +L + V L + +V R L G G
Sbjct: 60 AGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGL 119
Query: 175 GSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-SVYG---LSIICAL 230
G + +E A RGT G + W V+G L + +
Sbjct: 120 GGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGI 179
Query: 231 LPIFF-VGLMLLMPESPQFHLKKNRVKQAK 259
P+ + LM +PES F + K +
Sbjct: 180 APLLLLLLLMRFLPESIDFLVSKRPETVRR 209
Score = 27.7 bits (62), Expect = 8.6
Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 101 PFLVTESDLS-----FIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLL----AVPTLVGW 151
P L+ E S G+ G V GS + G L D +G + T LLL LVG
Sbjct: 274 PKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGS 333
Query: 152 GLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGT 196
L ++ G + F G + A T IR T
Sbjct: 334 TL---FSPTLLLLLGAIAGFFVNGGQ-SGLYALMALFYPTAIRAT 374
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 45.7 bits (109), Expect = 2e-05
Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 19/171 (11%)
Query: 102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT----MLLLAVPTL-VGWGLIIW 156
F ++E + + L G L D G + MLLL +P L + + +
Sbjct: 44 FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP 103
Query: 157 SQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGT---------LGTYFQLQCTA 207
S ++ LL G G SFAV +P + E +G LG
Sbjct: 104 STWQLLVIG--LLLGLAGASFAVGMPN-ASFFFPKEKQGLALGIAGAGNLGVAVAQLVAP 160
Query: 208 GILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQA 258
+ + +W +V G+ ++ L I V L M + P+ A
Sbjct: 161 LVAVAFGFLAWRNVAGIYVV--ALAIAAVLAWLGMNDVPEHRASVKPQLPA 209
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 44.9 bits (106), Expect = 3e-05
Identities = 40/191 (20%), Positives = 64/191 (33%), Gaps = 18/191 (9%)
Query: 81 MGTILGWTSPAGDR-LIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLV-----DTV 134
LGW A D L+A + E L+ + ++ + A S G L+ D
Sbjct: 15 SAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY 74
Query: 135 GRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIR 194
GR+ M+ V G ++ I RL+ G G G Y E +R
Sbjct: 75 GRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLR 134
Query: 195 GTLGTYFQ--------LQCTAGILFVYAVG-SWASVYGLSIICALLPIFFVGLMLLMPES 245
+ L V G W +++ +SI+ IF + L +PE+
Sbjct: 135 NKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISIL---PIIFALWLRKNIPEA 191
Query: 246 PQFHLKKNRVK 256
+ K
Sbjct: 192 EDWKEKHAGKA 202
Score = 33.7 bits (77), Expect = 0.14
Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 12/110 (10%)
Query: 118 LGAVFGSPVVGNLVDTVGRKNTMLL-LAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGS 176
+GA+ G V G L D +GR+ + L L+ + +V + G
Sbjct: 285 IGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQG 344
Query: 177 FAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSI 226
++P + E T+ R AG+ F Y +G+ I
Sbjct: 345 IWGILPKHLGEYFPTDQRA-----------AGLGFTYQLGNLGGALAPII 383
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 43.3 bits (103), Expect = 1e-04
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 9/125 (7%)
Query: 110 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW--SQSVIMFCAGR 167
S + + A+ G+P+ L G+K T LL + +G L+ + S+ +F
Sbjct: 260 SVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLV 319
Query: 168 LLTGFGGGSFAVVVPMYTAEIAE-----TEIRGTLGTYFQLQCTAGILFVYAVGSWASVY 222
+L G G G ++ A++ + T R G F L + A+G
Sbjct: 320 VLAGIGLGLATLLPWAMLADVVDYGEWKTGKRRE-GITFSLY-SFADKLGGALGGAIVGL 377
Query: 223 GLSII 227
L+
Sbjct: 378 LLAFA 382
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 40.3 bits (94), Expect = 0.001
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 3/136 (2%)
Query: 104 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMF 163
+T+ + +F+ ++ +G FG + G L D GRK M+ V VG GL + VIM
Sbjct: 50 LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIML 109
Query: 164 CAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAG-ILFVYAVGSWASVY 222
R + G G Y E ++ + G I+ Y + S+A Y
Sbjct: 110 TLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY 169
Query: 223 GL--SIICALLPIFFV 236
G + LLP+ V
Sbjct: 170 GWRAAFFVGLLPVLLV 185
Score = 28.0 bits (62), Expect = 7.2
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Query: 109 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL-LAVPTLVGWGLIIWSQ---SVIMFC 164
+S + ++ A G V G+ V G D +G K T + L + L + L Q ++ C
Sbjct: 268 VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGAC 327
Query: 165 A-GRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGT--YFQLQCTAGILFVYAVGSWASV 221
G + T G G +VP + + E+RG LGT + L T+G F +W +
Sbjct: 328 LFGLMATNVGVGG---LVPKFLYDYFPLEVRG-LGTGLIYNLAATSG-TFNSMAATWLGI 382
Query: 222 -YGLSIICALLPIFFVGLMLLM 242
GL + F+ +LL+
Sbjct: 383 TMGLGAALTFIVAFWTATILLI 404
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 39.5 bits (93), Expect = 0.002
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 11/137 (8%)
Query: 63 KRITQYMAALTATIGGFIMGT----ILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMAL 118
R ++A L + F +GT +G P IA + V+E + ++ AL
Sbjct: 7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPP-----IAAD--LGVSEGAAGQLITAYAL 59
Query: 119 GAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFA 178
G G+P++ L + R+ +L L +V L + S + R L G G F
Sbjct: 60 GVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFW 119
Query: 179 VVVPMYTAEIAETEIRG 195
+ A + RG
Sbjct: 120 SIAAALAARLVPPGKRG 136
Score = 31.0 bits (71), Expect = 0.80
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 101 PFL-----VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII 155
PFL + S +S + + + G+ + G L D R+ + L + L L
Sbjct: 236 PFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTF 295
Query: 156 WSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIA 189
S + A L GF + A +A
Sbjct: 296 TGASPALALALLFLWGFAFSPALQGLQTRLARLA 329
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 38.9 bits (91), Expect = 0.002
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 89 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT----MLLLA 144
SP ++I + + + L + + L ++G LVD G + T +LLLA
Sbjct: 21 SPLAVQMIKDDLGL--STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLA 78
Query: 145 VPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPM 183
+P L GL + S SV RL G GGSFA +P
Sbjct: 79 IPCL-WAGLAVQSYSV--LLLLRLFIGIAGGSFASCMPW 114
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 36.5 bits (85), Expect = 0.014
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 34/165 (20%)
Query: 122 FGSPVVGNLVDTVGRKNTM----LLLAVPTLVGWGLI-------IWSQSVIMFCAGRLLT 170
G+ V G+ D +GRK T+ L++ + TL+ GL+ IW+ I+ RL+
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL-IGLLPSYATIGIWAP--ILLLLARLIQ 106
Query: 171 GFG-GGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICA 229
GF GG + +Y AE A RG G++ Q+ A + + A + + L A
Sbjct: 107 GFSLGGEWGGAA-LYLAEYAPPGKRGFYGSFQQV--GAPVGLLLAALTVLLLSYLLGDDA 163
Query: 230 LL------PIFFVGLMLL---------MPESPQFHLKKNRVKQAK 259
LL P F V +L+ + E+P F + + K+ +
Sbjct: 164 LLEWGWRIP-FLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKR 207
Score = 31.1 bits (71), Expect = 0.78
Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 110 SFIGSSMALGAVFG--SPVVGNLVDTVGRKNTML-------LLAVPTLVGWGLIIWSQSV 160
S + M +F P+ G L D +GR+ ++ LLAVP L+ L+
Sbjct: 256 SALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLM--ALLDSGSFT 313
Query: 161 IMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGT-LGTYFQLQCTAGILFVYAVGSWA 219
+ F + GG + E+ TE+R T + L AG +F G +A
Sbjct: 314 LFFFLVLGMALIGGMYTGPMGSFL-PELFPTEVRYTGASLAYNL---AGAIF----GGFA 365
Query: 220 SVYGLSIICALLPIFFVGLMLLM 242
+++ + +G L
Sbjct: 366 PYIAAALVAMTGDWYAIGYYLAA 388
>gnl|CDD|182234 PRK10091, PRK10091, MFS transport protein AraJ; Provisional.
Length = 382
Score = 36.6 bits (85), Expect = 0.015
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 114 SSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFG 173
S ALG V G+P++ K+ +L L ++G + S S +M GRL++GF
Sbjct: 45 SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFP 104
Query: 174 GGSF 177
G+F
Sbjct: 105 HGAF 108
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 36.6 bits (83), Expect = 0.016
Identities = 49/266 (18%), Positives = 88/266 (33%), Gaps = 5/266 (1%)
Query: 69 MAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVG 128
+ L + ++G LG SPA L+ + S+ LG GS + G
Sbjct: 2 RSLLALALAALLLGLDLGLLSPALP-LLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAG 60
Query: 129 NLVDTVGRKNTMLLLAVPTLVGWGLIIW--SQSVIMFCAGRLLTGFGGGSFAVVVPMYTA 186
L D GR+ +++ + L+G L+ + + + RLL G GGG V +
Sbjct: 61 PLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLS 120
Query: 187 EIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESP 246
E G L A+G + L + F+ LL
Sbjct: 121 EWF--PEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLL 178
Query: 247 QFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGL 306
L + + A + ++ + + L + + + R L
Sbjct: 179 ILVLLLDLLLAAPRLPLAVGLALIELGKLLLLLLILLLGGLVLLLLGLYLSAAGFGLRAL 238
Query: 307 LIGLGVMFIQQFGGINAVVFYTVKIF 332
L+GLG+ + F G ++ +
Sbjct: 239 LLGLGLALLALFVGALILLVLLPILL 264
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 33.5 bits (77), Expect = 0.12
Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 18/158 (11%)
Query: 102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII----WS 157
++++DL + SS ++ V+G++ D + + + L+ ++ +S
Sbjct: 25 IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI----GLILCAIVNLFFGFS 80
Query: 158 QSVIMFCAGRLLTG-FGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVG 216
S+ + A L G F G + T + +E + + G L V
Sbjct: 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVL 140
Query: 217 -------SWASVYGLSIICALLPIFFVGLMLLMPESPQ 247
SW V+ + I A++ LL+ +SPQ
Sbjct: 141 FGIAELYSWHWVFIVPGIIAIIVSLIC--FLLLRDSPQ 176
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 31.2 bits (71), Expect = 0.85
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 65 ITQYMAALTATIGGFIMGTILG----WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGA 120
T A A + +I+ +LG P ++A +P + +S S+ LG
Sbjct: 72 FTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG 131
Query: 121 VFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII 155
+ G P+VG ++ + ++ V ++ WG++
Sbjct: 132 IIGGPLVGWILIHFSWQWAFIIEGVLGII-WGVLW 165
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 30.6 bits (70), Expect = 1.1
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 102 FLVTESDL----SFIGSSMAL---GAVFGSPVVGNLVDTVGRKNTMLL-LAVPTLVGWGL 153
F ++DL S + +S++L G G + G L D GRK +L L++ L G
Sbjct: 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFAL-GSLG 87
Query: 154 IIWSQSVIMFCAGRLLTGFGGGSFAV-----VVPMYTAEIAE 190
++W +S R + G S AV V+ Y A+ A
Sbjct: 88 MLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKAN 129
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 30.3 bits (69), Expect = 1.3
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 109 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI-IWSQSVIMFCAGR 167
S++GS + G + LV GRK + ++G+ + ++ +
Sbjct: 259 FSYMGSIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLI 318
Query: 168 LLTGFG 173
+L GFG
Sbjct: 319 ILAGFG 324
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 30.3 bits (68), Expect = 1.5
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 6/125 (4%)
Query: 118 LGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSF 177
L + SP G L D GRK +L A+ + L+ +Q++ F R L G GG
Sbjct: 65 LFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFV 124
Query: 178 AVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVG 237
+ ++ + LGT + +L A G A YGL P+FF+
Sbjct: 125 PNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLR------PVFFIT 178
Query: 238 LMLLM 242
+L
Sbjct: 179 ASVLF 183
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 30.0 bits (68), Expect = 1.7
Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 7/118 (5%)
Query: 102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW---SQ 158
F +T + S I + G S G L+ +G K ++L + VG L S+
Sbjct: 43 FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK 102
Query: 159 SVIMFCAGRLLTGFGGGSFAVVVPMYTAEI----AETEIRGTLGTYFQLQCTAGILFV 212
S F + G G Y + + + L G L
Sbjct: 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLG 160
>gnl|CDD|225123 COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC
component [Carbohydrate transport and metabolism].
Length = 472
Score = 30.0 bits (68), Expect = 1.8
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 17/95 (17%)
Query: 69 MAALTAT-----IGGFIMGTILGWTSPAGDRLIAGEYP----FLVTESDLSFIGSSMALG 119
M + +G IMG + GW D+ I G+ LV IG +A+
Sbjct: 87 MGVIVGADIPMFLGAMIMGPLGGWVIKKFDKWIEGKIKSGFEMLVNNFSAGIIGMILAIL 146
Query: 120 AVFGS-PVVGNLVDTVGRKNTMLLLAVPTLVGWGL 153
A + PVV L + L V LV GL
Sbjct: 147 AFYAIGPVVETL-------SKFLAAGVEALVHAGL 174
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 29.5 bits (67), Expect = 2.5
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 39/169 (23%)
Query: 102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGL---IIWSQ 158
F + + + + S+ LG + G+ + G L D +GRK L+++V + L W
Sbjct: 45 FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRI-LIVSVALFGLFSLATAQAWDF 103
Query: 159 SVIMFCAGRLLTGFG-GGSFAVVVPMYTAEIAETEIRGT-LGTYFQLQCTAGILFVYAVG 216
RLLTG G GG+ ++ + T+E +RGT + + G+ F A+
Sbjct: 104 P--SLLVARLLTGVGLGGALPNLIAL-TSEAVGPRLRGTAVSLMY-----CGVPFGGAL- 154
Query: 217 SWASVYGLSIICALLP-------IFFVG----------LMLLMPESPQF 248
ASV G+ L IF+VG LM +PES F
Sbjct: 155 --ASVIGV-----LAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAF 196
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 29.7 bits (67), Expect = 2.5
Identities = 15/67 (22%), Positives = 27/67 (40%)
Query: 114 SSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFG 173
+ LG G + G L D GR+ +LL + + S ++ R + FG
Sbjct: 47 TLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFG 106
Query: 174 GGSFAVV 180
+ +V+
Sbjct: 107 ASAGSVI 113
>gnl|CDD|239343 cd03045, GST_N_Delta_Epsilon, GST_N family, Class Delta and Epsilon
subfamily; GSTs are cytosolic dimeric proteins involved
in cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. GSTs also show GSH peroxidase activity
and are involved in the synthesis of prostaglandins and
leukotrienes. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. The class Delta and Epsilon subfamily is made
up primarily of insect GSTs, which play major roles in
insecticide resistance by facilitating reductive
dehydrochlorination of insecticides or conjugating them
with GSH to produce water-soluble metabolites that are
easily excreted. They are also implicated in protection
against cellular damage by oxidative stress.
Length = 74
Score = 27.2 bits (61), Expect = 2.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 145 VPTLVGWGLIIWSQSVIM 162
VPTLV G ++W I+
Sbjct: 52 VPTLVDNGFVLWESHAIL 69
>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional.
Length = 434
Score = 29.5 bits (67), Expect = 2.8
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 118 LGAVFGSPVVGNLVDTVGRKN----TMLLLAVPTLV-----GWGLI-IWSQSVIMFCAGR 167
LGA+ V+G +D VGR+ T+ ++A TL+ G+ I + + +++ GR
Sbjct: 71 LGAI----VLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLL--GR 124
Query: 168 LLTGFGGGSFAVVVPMYTAEIA 189
LL GF G V +Y AEIA
Sbjct: 125 LLQGFSAGVELGGVSVYLAEIA 146
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 29.3 bits (66), Expect = 3.2
Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 250 LKKNRVKQAKESLQWFRGSEYD-IDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLL 307
K+ ++ A+E L +E D + +EI +++ +E+ER + L + ++ + L
Sbjct: 312 EKERELEDAEERLAKLE-AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL 369
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 29.3 bits (66), Expect = 3.2
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 115 SMALGAVFGSPVVGNLVDTVGRKN----TMLLLAVPTLVGWGLIIWSQS---VIMFCAGR 167
S ++G + G G L D +GRK ++++ + T+ GL S + C R
Sbjct: 64 SASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVAS-GLSPGSSPKSVMATLCFWR 122
Query: 168 LLTGFGGGSFAVVVPMYTAEIAETEIRGTL-GTYFQLQ 204
G G G + + T+E A + RG + F +Q
Sbjct: 123 FWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQ 160
>gnl|CDD|165098 PHA02730, PHA02730, ankyrin-like protein; Provisional.
Length = 672
Score = 29.2 bits (65), Expect = 3.3
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 10 GYGAVKRLIISPFSSSAPQFDDVKPLVSPVDKMAAETKMGISQQTLVSNQQKAKRITQYM 69
GY + ++I F + DD+ D + E K + V+N Q A+R+ +Y
Sbjct: 433 GYHCYETILIDVFDILSKYMDDI-------DMIDNENKTLLYYAVDVNNIQFARRLLEYG 485
Query: 70 AALTAT 75
A++ T
Sbjct: 486 ASVNTT 491
>gnl|CDD|221312 pfam11916, Vac14_Fig4_bd, Vacuolar protein 14 C-terminal Fig4p
binding. Vac14 is a scaffold for the Fab1 kinase
complex, a complex that allows for the dynamic
interconversion of PI3P and PI(3,5)P2p (phosphoinositide
phosphate (PIP) lipids, that are generated transiently
on the cytoplasmic face of selected intracellular
membranes). This interconversion is regulated by at
least five proteins in yeast: the lipid kinase Fab1p,
lipid phosphatase Fig4p, the Fab1p activator Vac7p, the
Fab1p inhibitor Atg18p, and Vac14p, a protein required
for the activity of both Fab1p and Fig4p. The C-terminal
region of Vac14 binds to Fig4p. The full length Vac14 in
yeasts is likely to be a protein carrying a succession
of HEAT repeats, most of which have now degenerated.
This regulatory system is crucial for the proper
functioning of the mammalian nervous system.
Length = 181
Score = 28.3 bits (64), Expect = 3.8
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 237 GLMLLMPESPQFHLKKNRVK 256
GL++L+P+S F+ +NR++
Sbjct: 159 GLLMLLPQSTAFNTLRNRLQ 178
>gnl|CDD|215020 smart01091, CorC_HlyC, Transporter associated domain. This small
domain is found in a family of proteins with the DUF21
domain and two CBS domains with this domain found at the
C-terminus of the proteins, the domain is also found at
the C terminus of some Na+/H+ antiporters. This domain
is also found in CorC that is involved in Magnesium and
cobalt efflux. The function of this domain is uncertain
but might be involved in modulating transport of ion
substrates.
Length = 78
Score = 27.0 bits (61), Expect = 4.0
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 75 TIGGFIMGTILGWTSPA-GDRLIAGEYPFLVTESD 108
T+GG ++ LG P GD + G F V E D
Sbjct: 34 TLGGLVL-EELG-RIPEVGDSVEIGGLRFEVLEVD 66
>gnl|CDD|182109 PRK09848, PRK09848, glucuronide transporter; Provisional.
Length = 448
Score = 29.0 bits (65), Expect = 4.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 110 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 157
+ +G V +P+V +V +G+KNT L+ A+ G+ L W
Sbjct: 267 VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV 314
>gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional.
Length = 476
Score = 28.7 bits (65), Expect = 5.1
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 105 TESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM---LLLAVPTLVGWGLIIWSQSVI 161
T+SD+ G + G++F +G + D G + L+L P + L+ S
Sbjct: 69 TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV---SSAT 125
Query: 162 MFCAGRLLTGFGGGSF 177
F A R GF +F
Sbjct: 126 GFIAVRFFIGFSLATF 141
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 28.3 bits (64), Expect = 6.1
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 114 SSMALGAVFGSPVVGNLVDTVGRKNTMLL-LAVPTLVGWGLIIWSQSVIMFCAGRLLTGF 172
S+ LG G G + D+ GRK +L V L + +Q++ R L G
Sbjct: 33 SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL-AQTIDQLIYMRFLHGL 91
Query: 173 GGGSFAVVV 181
+ +VV+
Sbjct: 92 AAAAASVVI 100
>gnl|CDD|152459 pfam12024, DUF3512, Domain of unknown function (DUF3512). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 231 to 249 amino acids in length. This domain is
found associated with pfam00439.
Length = 245
Score = 28.1 bits (63), Expect = 6.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 14 VKRLIISPFSSSAPQFDDVKPLVSP 38
V L P+SS AP +D +S
Sbjct: 116 VSYLNYGPYSSFAPTYDSTFANLSK 140
>gnl|CDD|151614 pfam11172, DUF2959, Protein of unknown function (DUF2959). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 201
Score = 27.6 bits (62), Expect = 6.8
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 250 LKKNRVKQAKESLQW-FRGSEYDIDSEITDMQNS 282
LK N QA SLQ R + D+ S I DM+ +
Sbjct: 156 LKHNLNAQAIGSLQGELRSLQSDVSSLIKDMEKA 189
>gnl|CDD|129926 TIGR00846, caca2, calcium/proton exchanger. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is generated from
the calcium ion/proton exchangers of the CacA family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 365
Score = 28.1 bits (63), Expect = 7.5
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 135 GRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIA 189
G +LL+ VP + GL WSQ+VI LL G A V T ++A
Sbjct: 13 GSWLNILLIFVPAAIILGLWGWSQTVIF-----LLNLLGIIPLAERVSFATEQLA 62
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 28.0 bits (63), Expect = 8.8
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 103 LVTES---DLSFIGSSMA---LGAVFGSPVVGNLVDTVGRKNTML----LLAVPTLVGWG 152
V E ++ +SM G +F ++G L D +GR+ ML + L
Sbjct: 38 AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCL---- 93
Query: 153 LIIWSQSVIMFCAGRLLTGFG 173
I+ +QS+ F R L G G
Sbjct: 94 AILLAQSIEQFTLLRFLQGIG 114
>gnl|CDD|236549 PRK09528, lacY, galactoside permease; Reviewed.
Length = 420
Score = 27.6 bits (62), Expect = 9.9
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 118 LGAVFGSPVVGNLVDTVGRKNTMLLLAV 145
LGAVF S + GNL D++G + T L+L
Sbjct: 363 LGAVFLSTLAGNLYDSIGFQGTYLILGG 390
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.406
Gapped
Lambda K H
0.267 0.0870 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,116,614
Number of extensions: 1677368
Number of successful extensions: 2076
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2029
Number of HSP's successfully gapped: 119
Length of query: 333
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 236
Effective length of database: 6,635,264
Effective search space: 1565922304
Effective search space used: 1565922304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.2 bits)