RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15539
(333 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 57/320 (17%), Positives = 96/320 (30%), Gaps = 101/320 (31%)
Query: 28 QFDDVKPLVSPVDKMAAETKMGISQQTLVSNQ----------QKAKRITQ-YMAALTATI 76
+ + + D +T G S +V N +K KRI + Y A + TI
Sbjct: 1638 TSKAAQDVWNRADNHFKDT-YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 77 GGFIMGTILGWTSPAGDRLIAGEYPFL-VTESDLSFIGSSMALGAVFGSPVVGNLVDTVG 135
D + E F + E S+ F S G L T
Sbjct: 1697 V---------------DGKLKTEKIFKEINEHSTSYT---------FRSEK-GLLSAT-- 1729
Query: 136 RKNT---MLLLAV---PTLVGWGLIIWSQSVIMFCAGR-L-----LTGFGGG-SFAVVVP 182
+ T + L+ L GLI + F AG L L S +V
Sbjct: 1730 -QFTQPALTLMEKAAFEDLKSKGLI---PADATF-AGHSLGEYAALASLADVMSIESLVE 1784
Query: 183 MYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLM 242
+ RG Q+ +G S YG + A+ P G +
Sbjct: 1785 V-------VFYRGMT---MQVAVPRD-----ELGR--SNYG---MIAINP----GRVAAS 1820
Query: 243 PESPQFHLKKNRVKQAKESLQWF--------RGSEY-------DIDSEITDMQNSLEKER 287
+ V++ + W +Y +D +T++ N ++ ++
Sbjct: 1821 FSQEAL---QYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD-TVTNVLNFIKLQK 1876
Query: 288 SDKVPLMQAFSTPAAKRGLL 307
D + L ++ S + L
Sbjct: 1877 IDIIELQKSLSLEEVEGHLF 1896
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural
GE PSI-2, protein structure initiative, midwest center
for STR genomics; HET: MLY MSE; 1.80A {Haemophilus
ducreyi} SCOP: d.145.1.4
Length = 86
Score = 32.9 bits (76), Expect = 0.025
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 74 ATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESD 108
TIGGF+M +L D ++ Y F + +++
Sbjct: 38 ETIGGFMM-YMLRXIPXXTDFVLYDXYXFEIIDTE 71
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 32.6 bits (74), Expect = 0.18
Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 8/143 (5%)
Query: 42 MAAETKMGISQQTLVSNQQKAKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYP 101
M + S + + + +++ A L + F+ +
Sbjct: 1 MGNTSIQTQSYRAVDKDAGQSRSYIIPFALLCSLF--FLWAVANNLNDILLPQFQQA--- 55
Query: 102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII---WSQ 158
F +T I S+ G G L+ + K ++ +G L
Sbjct: 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM 115
Query: 159 SVIMFCAGRLLTGFGGGSFAVVV 181
+ +F G + G G
Sbjct: 116 NYTLFLVGLFIIAAGLGCLETAA 138
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 32.2 bits (74), Expect = 0.22
Identities = 15/79 (18%), Positives = 31/79 (39%)
Query: 102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVI 161
V E + + + L G + D VGR+ +L+ ++ + + + S+
Sbjct: 30 LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT 89
Query: 162 MFCAGRLLTGFGGGSFAVV 180
+ A + G G G V+
Sbjct: 90 VLIAASAMQGMGTGVGGVM 108
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.44
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 25/51 (49%)
Query: 275 EITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVV 325
+ +Q SL+ D S PA L I A +
Sbjct: 21 ALKKLQASLKLYADD--------SAPA----L-------------AIKATM 46
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 31.2 bits (71), Expect = 0.50
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 12/77 (15%)
Query: 105 TESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI--------IW 156
+ DL F S +++ F ++G++ D + + L+ +
Sbjct: 60 SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA----GLILAAAVMLFMGFVPWA 115
Query: 157 SQSVIMFCAGRLLTGFG 173
+ S+ + L G+
Sbjct: 116 TSSIAVMFVLLFLCGWF 132
Score = 28.1 bits (63), Expect = 4.9
Identities = 26/174 (14%), Positives = 64/174 (36%), Gaps = 18/174 (10%)
Query: 102 FLVTESDLSFIGSSMA-----LGAVFGSPVVGNLVDTV--GRKNTMLLLAVPTLVGWGLI 154
+L + SS A + G+ + G + D V G + + + + ++
Sbjct: 278 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV 337
Query: 155 IW---SQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGT------LGTYFQLQC 205
W + + + ++ GF +++ ++ E+A + GT L Y
Sbjct: 338 YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 397
Query: 206 TAGILFVYAVG--SWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQ 257
A + Y V W + + I ++L + + ++++ + L + V +
Sbjct: 398 AASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELVPR 451
>1h4a_X Gamma crystallin D; eye lens protein; 1.15A {Homo sapiens} SCOP:
b.11.1.1 b.11.1.1 PDB: 1hk0_X 2g98_A 2kfb_A 2klj_A
1elp_A 1a45_A 1zir_A 1a5d_A 1zgt_A 1ziq_A 1zie_A 1m8u_A
1amm_A 1gcs_A 4gcr_A 1i5i_A 2v2u_A 2jdf_A 1dsl_A 1gam_A
Length = 173
Score = 26.7 bits (59), Expect = 9.1
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 265 FRGSEYDIDSEITDMQNSLEKERSDKVP 292
F+G Y+ S+ ++Q L + S +V
Sbjct: 11 FQGRHYECSSDHPNLQPYLSRCNSARVD 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.406
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,966,757
Number of extensions: 292086
Number of successful extensions: 553
Number of sequences better than 10.0: 1
Number of HSP's gapped: 548
Number of HSP's successfully gapped: 21
Length of query: 333
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 239
Effective length of database: 4,077,219
Effective search space: 974455341
Effective search space used: 974455341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.2 bits)