RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15539
         (333 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 51.6 bits (122), Expect = 6e-08
 Identities = 25/231 (10%), Positives = 68/231 (29%), Gaps = 11/231 (4%)

Query: 102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM----LLLAVPTLVGWGLIIWS 157
              +  DL F  S +++   F   ++G++ D    +  +    +L A   L    +   +
Sbjct: 54  QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 113

Query: 158 QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGS 217
            S+ +      L G+  G                + RG + + +      G      +  
Sbjct: 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173

Query: 218 WASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEIT 277
               +      AL    F  +++ +            ++   +S       EY  D    
Sbjct: 174 LGMAWFNDWHAALYMPAFCAILVAL-------FAFAMMRDTPQSCGLPPIEEYKNDYPDD 226

Query: 278 DMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYT 328
             + + ++  + ++ +             +  + V  ++      +  +  
Sbjct: 227 YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK 277



 Score = 31.6 bits (70), Expect = 0.13
 Identities = 14/122 (11%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 139 TMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLG 198
              +  V        +  + +  +     ++ GF      +++ ++  E+A  +  GT  
Sbjct: 322 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 381

Query: 199 TYFQL--QCTAGILFVYAVG------SWASVYGLSIICALLPIFFVGLMLLMPESPQFHL 250
            +  L       +     VG       W   + + I  ++L +  + ++++  +     L
Sbjct: 382 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQL 441

Query: 251 KK 252
            +
Sbjct: 442 LQ 443


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 26/173 (15%), Positives = 54/173 (31%), Gaps = 10/173 (5%)

Query: 104 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMF 163
           +++SD   I ++++L ++   P+ G L D +G +  +L +    LV +          + 
Sbjct: 40  ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99

Query: 164 CAGRLLTGFGGGSFAVVVPMYTAEIAETEIRG----------TLGTYFQLQCTAGILFVY 213
               L+    GG +        A   E  I                +  +    G   V 
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159

Query: 214 AVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFR 266
            + +  + +   +      I  V L     ++P      N V     +     
Sbjct: 160 IMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKL 212



 Score = 34.0 bits (76), Expect = 0.024
 Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 6/149 (4%)

Query: 116 MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGG 175
             L           +++ +G KN +LL      V      ++ S +     + L  F   
Sbjct: 268 GELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVP 327

Query: 176 SFAVVVPMYTAEIAETEIRGT-LGTYFQL-QCTAGILFVYAVGSWASVYGLS----IICA 229
              V    Y     E     T     F   +  A I      G+     G      ++  
Sbjct: 328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL 387

Query: 230 LLPIFFVGLMLLMPESPQFHLKKNRVKQA 258
           +   F +  +  +       L + +V + 
Sbjct: 388 VALGFTLISVFTLSGPGPLSLLRRQVNEV 416



 Score = 29.7 bits (65), Expect = 0.52
 Identities = 11/82 (13%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 76  IGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFI-GSSMALGAVFGSPVVGNLVDTV 134
           I   +    + +      + I  ++    + +           L  +F S + GN+ +++
Sbjct: 317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376

Query: 135 GRKNTMLLLAVPTLVGWGLIIW 156
           G +   L+L +  L    + ++
Sbjct: 377 GFQGAYLVLGLVALGFTLISVF 398


>d1h4ax1 b.11.1.1 (X:1-85) gamma-Crystallin {Human (Homo sapiens),
           isoform D [TaxId: 9606]}
          Length = 85

 Score = 27.4 bits (61), Expect = 0.77
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 265 FRGSEYDIDSEITDMQNSLEKERSDKVP 292
           F+G  Y+  S+  ++Q  L +  S +V 
Sbjct: 11  FQGRHYECSSDHPNLQPYLSRCNSARVD 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,169,930
Number of extensions: 50885
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 9
Length of query: 333
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,226,816
Effective search space: 303023552
Effective search space used: 303023552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.7 bits)