Query psy15540
Match_columns 87
No_of_seqs 113 out of 1319
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 23:55:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09705 cynX putative cyanate 99.2 3.1E-11 6.8E-16 75.9 4.5 74 7-83 27-100 (393)
2 TIGR00890 2A0111 Oxalate/Forma 99.1 6.3E-11 1.4E-15 72.8 3.1 72 9-83 23-94 (377)
3 PRK03633 putative MFS family t 99.1 1.3E-10 2.7E-15 72.7 3.6 77 4-83 21-97 (381)
4 PRK10091 MFS transport protein 99.1 9.2E-11 2E-15 73.4 2.9 74 8-84 22-95 (382)
5 PRK03545 putative arabinose tr 99.0 4E-10 8.6E-15 70.6 5.0 71 10-83 30-100 (390)
6 TIGR02332 HpaX 4-hydroxyphenyl 99.0 4.2E-10 9E-15 71.3 5.1 70 11-83 30-99 (412)
7 TIGR00891 2A0112 putative sial 99.0 1.7E-10 3.7E-15 71.8 2.8 72 9-83 32-103 (405)
8 COG2814 AraJ Arabinose efflux 99.0 4.4E-10 9.5E-15 71.1 4.3 73 9-84 33-105 (394)
9 PRK14995 methyl viologen resis 99.0 4.3E-10 9.4E-15 72.7 4.3 72 9-83 26-97 (495)
10 PRK15403 multidrug efflux syst 99.0 6E-10 1.3E-14 70.6 4.3 73 8-83 35-107 (413)
11 TIGR00898 2A0119 cation transp 99.0 9.5E-10 2.1E-14 70.8 5.2 70 11-83 111-183 (505)
12 TIGR01299 synapt_SV2 synaptic 99.0 2.5E-10 5.3E-15 77.1 2.0 73 8-83 186-258 (742)
13 PRK10077 xylE D-xylose transpo 99.0 1.2E-09 2.7E-14 69.8 4.9 75 2-76 25-104 (479)
14 PRK12307 putative sialic acid 99.0 3.8E-10 8.2E-15 71.2 2.4 72 9-83 38-109 (426)
15 TIGR00710 efflux_Bcr_CflA drug 99.0 5.6E-10 1.2E-14 69.2 3.0 74 7-83 23-96 (385)
16 TIGR00885 fucP L-fucose:H+ sym 98.9 4.9E-10 1.1E-14 71.1 2.6 72 2-76 16-87 (410)
17 TIGR00886 2A0108 nitrite extru 98.9 1.2E-09 2.7E-14 67.4 4.2 72 9-83 21-94 (366)
18 KOG0254|consensus 98.9 2.5E-09 5.4E-14 69.5 5.6 79 5-83 63-145 (513)
19 PRK11551 putative 3-hydroxyphe 98.9 5.6E-10 1.2E-14 70.0 2.2 72 9-83 35-106 (406)
20 TIGR00711 efflux_EmrB drug res 98.9 6.7E-10 1.5E-14 70.9 2.5 74 7-83 20-93 (485)
21 PRK10213 nepI ribonucleoside t 98.9 2.2E-09 4.7E-14 67.7 4.8 70 11-83 42-111 (394)
22 PRK10133 L-fucose transporter; 98.9 4.9E-10 1.1E-14 71.6 1.8 73 7-82 44-119 (438)
23 PRK11102 bicyclomycin/multidru 98.9 1.2E-09 2.6E-14 67.8 3.5 74 6-82 8-81 (377)
24 TIGR00881 2A0104 phosphoglycer 98.9 1.2E-09 2.6E-14 67.2 3.3 71 10-83 16-86 (379)
25 PRK11652 emrD multidrug resist 98.9 2.4E-09 5.2E-14 67.1 4.5 71 9-82 28-98 (394)
26 PRK03699 putative transporter; 98.9 2.1E-09 4.5E-14 67.6 4.2 72 9-83 27-98 (394)
27 TIGR00903 2A0129 major facilit 98.9 2.2E-09 4.9E-14 67.4 4.1 60 8-70 10-69 (368)
28 PRK15402 multidrug efflux syst 98.9 2.2E-09 4.7E-14 67.5 3.9 71 9-82 33-103 (406)
29 TIGR00896 CynX cyanate transpo 98.9 3.1E-09 6.6E-14 65.8 4.5 70 8-81 19-88 (355)
30 PRK11043 putative transporter; 98.9 2.3E-09 5E-14 67.3 4.0 71 10-83 27-97 (401)
31 PRK09556 uhpT sugar phosphate 98.9 2E-09 4.4E-14 69.1 3.2 64 10-76 50-113 (467)
32 PF07690 MFS_1: Major Facilita 98.8 2.9E-09 6.3E-14 65.1 3.4 70 9-81 16-86 (352)
33 TIGR00893 2A0114 d-galactonate 98.8 2.7E-09 5.9E-14 65.7 3.3 71 10-83 15-85 (399)
34 PLN00028 nitrate transmembrane 98.8 4.8E-09 1E-13 67.7 4.3 72 9-83 56-127 (476)
35 PRK03893 putative sialic acid 98.8 1.8E-09 3.9E-14 69.3 2.3 72 8-82 39-110 (496)
36 PRK11663 regulatory protein Uh 98.8 4.9E-09 1.1E-13 66.8 4.2 72 9-83 43-114 (434)
37 KOG0255|consensus 98.8 7.4E-09 1.6E-13 67.2 5.0 64 21-84 112-175 (521)
38 PRK10473 multidrug efflux syst 98.8 5.8E-09 1.3E-13 65.3 4.2 70 10-82 24-93 (392)
39 TIGR00900 2A0121 H+ Antiporter 98.8 2.3E-09 4.9E-14 65.8 2.1 68 8-78 18-85 (365)
40 cd06174 MFS The Major Facilita 98.8 4.8E-09 1E-13 63.8 3.2 73 7-82 17-89 (352)
41 TIGR00899 2A0120 sugar efflux 98.8 5.4E-09 1.2E-13 64.7 3.1 76 4-82 12-89 (375)
42 PRK05122 major facilitator sup 98.8 4E-09 8.6E-14 66.1 2.5 67 6-75 32-99 (399)
43 TIGR00895 2A0115 benzoate tran 98.8 6.9E-09 1.5E-13 64.3 3.5 70 10-82 38-107 (398)
44 PRK10504 putative transporter; 98.8 5.3E-09 1.1E-13 66.9 2.9 71 9-82 30-100 (471)
45 TIGR00892 2A0113 monocarboxyla 98.8 1E-08 2.3E-13 65.8 4.2 69 12-83 42-110 (455)
46 PRK10642 proline/glycine betai 98.8 5.2E-09 1.1E-13 67.6 2.6 50 33-82 63-112 (490)
47 PRK12382 putative transporter; 98.7 1.8E-08 3.9E-13 63.1 4.5 62 7-71 33-95 (392)
48 TIGR00879 SP MFS transporter, 98.7 2.4E-08 5.2E-13 63.0 5.0 56 24-79 68-123 (481)
49 PF06779 DUF1228: Protein of u 98.7 6.5E-08 1.4E-12 49.2 5.1 72 9-83 12-83 (85)
50 KOG1330|consensus 98.7 4.6E-09 1E-13 67.4 0.9 65 20-84 61-125 (493)
51 PRK09874 drug efflux system pr 98.7 1.9E-08 4E-13 63.1 3.3 75 6-83 31-110 (408)
52 PRK10054 putative transporter; 98.7 3.3E-08 7E-13 62.5 4.4 62 21-82 37-98 (395)
53 PRK10406 alpha-ketoglutarate t 98.6 1.9E-08 4.2E-13 64.0 2.6 51 31-81 67-117 (432)
54 PRK11273 glpT sn-glycerol-3-ph 98.6 8E-08 1.7E-12 61.6 4.6 64 11-78 51-114 (452)
55 PRK10207 dipeptide/tripeptide 98.6 5.2E-08 1.1E-12 63.3 3.6 59 21-79 44-103 (489)
56 TIGR00897 2A0118 polyol permea 98.6 5.2E-08 1.1E-12 61.5 3.5 63 9-74 33-95 (402)
57 PRK11195 lysophospholipid tran 98.6 1E-07 2.3E-12 60.1 4.7 59 21-79 32-90 (393)
58 PRK15075 citrate-proton sympor 98.6 1.2E-07 2.5E-12 60.5 4.4 70 10-82 36-111 (434)
59 PF12832 MFS_1_like: MFS_1 lik 98.6 8.9E-08 1.9E-12 48.0 3.0 46 21-66 29-74 (77)
60 TIGR00889 2A0110 nucleoside tr 98.5 1.1E-07 2.5E-12 60.5 4.0 61 21-81 32-93 (418)
61 TIGR00924 yjdL_sub1_fam amino 98.5 1.1E-07 2.4E-12 61.6 3.9 60 22-81 43-103 (475)
62 PRK15034 nitrate/nitrite trans 98.5 2E-07 4.4E-12 60.4 4.8 63 21-83 64-131 (462)
63 TIGR00805 oat sodium-independe 98.5 1.2E-08 2.5E-13 68.2 -1.7 71 5-78 49-119 (633)
64 PRK11646 multidrug resistance 98.5 2.9E-07 6.3E-12 58.3 4.7 63 21-83 40-102 (400)
65 TIGR00887 2A0109 phosphate:H+ 98.5 5.9E-07 1.3E-11 58.3 5.7 57 23-79 52-108 (502)
66 TIGR00806 rfc RFC reduced fola 98.4 2.3E-07 5.1E-12 60.4 3.4 63 21-83 55-118 (511)
67 COG0738 FucP Fucose permease [ 98.4 1.7E-07 3.7E-12 59.6 2.4 75 2-79 26-100 (422)
68 TIGR00894 2A0114euk Na(+)-depe 98.4 8.7E-07 1.9E-11 56.9 5.5 57 21-77 70-126 (465)
69 PRK09528 lacY galactoside perm 98.4 2.6E-07 5.7E-12 58.5 2.9 48 21-68 40-87 (420)
70 TIGR00882 2A0105 oligosacchari 98.4 3.3E-07 7E-12 57.7 3.3 48 21-68 32-79 (396)
71 PF00083 Sugar_tr: Sugar (and 98.4 3.2E-08 7E-13 62.9 -1.3 58 26-83 45-105 (451)
72 PF06609 TRI12: Fungal trichot 98.4 3.8E-07 8.2E-12 60.7 3.2 61 21-82 73-133 (599)
73 KOG2504|consensus 98.4 6.3E-07 1.4E-11 58.8 4.1 64 21-84 75-138 (509)
74 KOG2615|consensus 98.3 9.8E-07 2.1E-11 56.1 4.3 57 26-82 67-123 (451)
75 PTZ00207 hypothetical protein; 98.3 3.2E-07 6.9E-12 61.0 2.0 62 12-77 50-111 (591)
76 PRK09952 shikimate transporter 98.3 1.6E-06 3.4E-11 55.6 5.0 48 35-82 72-119 (438)
77 TIGR00712 glpT glycerol-3-phos 98.3 9E-07 2E-11 56.5 3.8 56 22-77 56-111 (438)
78 PRK15462 dipeptide/tripeptide 98.3 9.7E-07 2.1E-11 57.7 3.6 56 21-76 39-95 (493)
79 KOG0569|consensus 98.3 2.5E-06 5.5E-11 55.6 5.2 50 29-78 62-111 (485)
80 TIGR00883 2A0106 metabolite-pr 98.2 3.9E-06 8.5E-11 52.0 5.7 58 24-81 27-89 (394)
81 COG2223 NarK Nitrate/nitrite t 98.2 1E-06 2.2E-11 56.2 3.0 70 9-81 34-103 (417)
82 KOG0252|consensus 98.2 2.6E-06 5.7E-11 55.3 4.8 55 24-78 81-135 (538)
83 COG2271 UhpC Sugar phosphate p 98.2 6.8E-07 1.5E-11 57.2 2.1 72 11-85 51-122 (448)
84 KOG2532|consensus 98.2 5E-06 1.1E-10 54.1 5.3 61 21-81 67-127 (466)
85 TIGR00901 2A0125 AmpG-related 98.2 2.4E-06 5.3E-11 52.9 3.6 72 2-78 1-78 (356)
86 PRK09584 tppB putative tripept 98.1 2.9E-06 6.3E-11 55.4 3.7 58 21-78 51-109 (500)
87 PF05631 DUF791: Protein of un 98.1 4.9E-06 1.1E-10 52.3 4.3 54 21-74 63-116 (354)
88 PRK10489 enterobactin exporter 98.1 4.2E-07 9.1E-12 57.5 -0.4 61 10-73 38-98 (417)
89 TIGR01301 GPH_sucrose GPH fami 98.1 2.4E-06 5.3E-11 55.7 2.3 69 9-80 24-97 (477)
90 TIGR00890 2A0111 Oxalate/Forma 98.1 1.2E-05 2.5E-10 49.6 5.1 58 21-78 234-291 (377)
91 PRK11902 ampG muropeptide tran 98.0 4.4E-06 9.5E-11 52.8 2.8 72 2-78 12-89 (402)
92 PRK15011 sugar efflux transpor 98.0 1.5E-05 3.2E-10 50.3 4.8 61 21-82 45-107 (393)
93 PRK03699 putative transporter; 98.0 1.7E-05 3.6E-10 50.1 4.8 60 21-80 235-294 (394)
94 TIGR00902 2A0127 phenyl propri 98.0 5.8E-06 1.3E-10 52.0 2.6 51 6-59 21-71 (382)
95 TIGR00880 2_A_01_02 Multidrug 98.0 4.8E-06 1E-10 44.5 1.9 48 34-81 5-52 (141)
96 PF03825 Nuc_H_symport: Nucleo 98.0 6.1E-06 1.3E-10 52.7 2.6 73 6-81 19-92 (400)
97 KOG3764|consensus 97.9 2.5E-05 5.4E-10 50.2 4.7 63 21-83 100-162 (464)
98 PRK15011 sugar efflux transpor 97.9 2.6E-05 5.7E-10 49.2 4.8 59 21-79 246-304 (393)
99 PRK08633 2-acyl-glycerophospho 97.9 3.1E-05 6.7E-10 54.5 5.6 48 27-74 47-94 (1146)
100 PRK09528 lacY galactoside perm 97.9 3.5E-05 7.5E-10 49.0 5.0 60 23-82 258-317 (420)
101 PRK11551 putative 3-hydroxyphe 97.9 3.6E-05 7.9E-10 48.5 4.9 59 21-79 249-307 (406)
102 KOG0253|consensus 97.9 1E-05 2.2E-10 51.8 2.3 63 21-83 107-169 (528)
103 cd06174 MFS The Major Facilita 97.8 4.1E-05 8.9E-10 46.6 4.7 59 22-80 206-265 (352)
104 PRK10133 L-fucose transporter; 97.8 7.4E-05 1.6E-09 48.1 5.9 58 21-78 289-346 (438)
105 PRK11128 putative 3-phenylprop 97.8 1.6E-05 3.5E-10 49.9 2.8 50 5-57 20-69 (382)
106 TIGR00792 gph sugar (Glycoside 97.8 2.7E-05 5.8E-10 49.5 3.7 59 21-79 29-92 (437)
107 PRK10473 multidrug efflux syst 97.8 6.1E-05 1.3E-09 47.4 4.9 58 21-78 233-290 (392)
108 PRK09556 uhpT sugar phosphate 97.8 6E-05 1.3E-09 48.7 4.8 46 21-66 288-333 (467)
109 PRK10642 proline/glycine betai 97.8 3.6E-05 7.9E-10 50.0 3.8 48 21-68 280-327 (490)
110 TIGR00896 CynX cyanate transpo 97.8 6.9E-05 1.5E-09 46.5 4.8 57 21-77 226-283 (355)
111 TIGR00902 2A0127 phenyl propri 97.7 6E-05 1.3E-09 47.5 4.4 62 21-82 234-295 (382)
112 TIGR00879 SP MFS transporter, 97.7 7.9E-05 1.7E-09 47.2 4.8 55 21-75 313-367 (481)
113 PRK03893 putative sialic acid 97.7 9.9E-05 2.2E-09 47.7 5.3 52 21-72 305-356 (496)
114 TIGR00891 2A0112 putative sial 97.7 4.4E-05 9.6E-10 47.6 3.5 47 21-67 268-314 (405)
115 TIGR01299 synapt_SV2 synaptic 97.7 9.7E-05 2.1E-09 50.7 5.3 51 30-80 598-648 (742)
116 PRK03633 putative MFS family t 97.7 3E-05 6.6E-10 48.7 2.6 57 12-71 223-279 (381)
117 TIGR01272 gluP glucose/galacto 97.7 0.00021 4.5E-09 44.2 6.2 56 21-76 172-227 (310)
118 TIGR00899 2A0120 sugar efflux 97.7 8.9E-05 1.9E-09 46.0 4.5 59 21-79 229-287 (375)
119 COG2223 NarK Nitrate/nitrite t 97.7 2.6E-05 5.7E-10 50.0 2.1 58 21-78 248-305 (417)
120 PRK10091 MFS transport protein 97.7 9.7E-05 2.1E-09 46.5 4.5 54 21-74 229-282 (382)
121 TIGR00886 2A0108 nitrite extru 97.7 9.1E-05 2E-09 45.9 4.3 55 21-75 255-309 (366)
122 PRK10077 xylE D-xylose transpo 97.7 0.00013 2.8E-09 46.9 5.1 56 21-76 300-355 (479)
123 PRK09705 cynX putative cyanate 97.7 0.00012 2.7E-09 46.3 4.9 54 21-74 234-287 (393)
124 PRK15075 citrate-proton sympor 97.6 0.00011 2.5E-09 47.0 4.7 46 21-66 268-313 (434)
125 TIGR00710 efflux_Bcr_CflA drug 97.6 0.00017 3.8E-09 44.8 5.3 55 21-75 236-290 (385)
126 KOG0569|consensus 97.6 0.00019 4.2E-09 47.1 5.6 57 21-77 299-355 (485)
127 PRK12307 putative sialic acid 97.6 0.00018 3.9E-09 45.6 5.1 52 21-72 260-311 (426)
128 TIGR00883 2A0106 metabolite-pr 97.6 0.00022 4.7E-09 44.2 5.3 47 21-67 249-295 (394)
129 TIGR00711 efflux_EmrB drug res 97.6 0.00017 3.6E-09 46.4 4.9 55 21-75 285-339 (485)
130 TIGR00901 2A0125 AmpG-related 97.6 0.00015 3.2E-09 45.0 4.5 55 21-75 238-293 (356)
131 KOG3762|consensus 97.6 7.3E-05 1.6E-09 49.6 3.1 49 21-69 40-88 (618)
132 PRK03545 putative arabinose tr 97.5 0.00026 5.6E-09 44.6 5.2 43 21-63 235-277 (390)
133 PRK11128 putative 3-phenylprop 97.5 0.00028 6.1E-09 44.4 5.3 62 21-82 234-295 (382)
134 PRK11102 bicyclomycin/multidru 97.5 0.00024 5.1E-09 44.3 4.9 48 21-68 224-271 (377)
135 PRK09952 shikimate transporter 97.5 0.00037 8E-09 44.8 5.5 49 21-69 280-328 (438)
136 PRK10406 alpha-ketoglutarate t 97.5 0.00032 6.9E-09 44.9 5.2 47 21-67 273-319 (432)
137 TIGR02718 sider_RhtX_FptX side 97.5 8.3E-05 1.8E-09 46.8 2.1 60 2-64 14-76 (390)
138 TIGR00895 2A0115 benzoate tran 97.5 0.00034 7.4E-09 43.5 4.8 43 21-63 279-321 (398)
139 COG2814 AraJ Arabinose efflux 97.4 0.00031 6.8E-09 45.0 4.5 58 21-79 241-298 (394)
140 TIGR00897 2A0118 polyol permea 97.4 0.00033 7.1E-09 44.4 4.6 41 21-61 251-291 (402)
141 TIGR00900 2A0121 H+ Antiporter 97.4 0.00032 7E-09 43.1 4.5 57 22-78 242-298 (365)
142 PF06813 Nodulin-like: Nodulin 97.4 0.00035 7.6E-09 42.3 4.4 61 13-77 26-86 (250)
143 TIGR00882 2A0105 oligosacchari 97.4 0.0005 1.1E-08 43.4 5.3 60 23-82 250-309 (396)
144 PRK11010 ampG muropeptide tran 97.4 0.00011 2.3E-09 48.1 2.0 67 6-77 29-101 (491)
145 PRK11010 ampG muropeptide tran 97.4 0.00054 1.2E-08 44.8 5.1 49 21-69 252-301 (491)
146 COG3104 PTR2 Dipeptide/tripept 97.4 0.0003 6.4E-09 46.2 3.8 74 5-78 38-113 (498)
147 PRK15402 multidrug efflux syst 97.4 0.00064 1.4E-08 43.0 5.2 56 21-76 245-300 (406)
148 COG2807 CynX Cyanate permease 97.3 0.00044 9.5E-09 44.1 4.3 66 9-77 32-97 (395)
149 PRK06814 acylglycerophosphoeth 97.3 0.00045 9.7E-09 49.0 4.8 36 27-62 52-87 (1140)
150 TIGR00889 2A0110 nucleoside tr 97.3 0.00085 1.8E-08 43.0 5.6 51 26-76 250-300 (418)
151 PRK14995 methyl viologen resis 97.3 0.00066 1.4E-08 44.3 5.2 55 21-75 289-343 (495)
152 PF13347 MFS_2: MFS/sugar tran 97.3 0.00015 3.1E-09 46.4 1.9 52 27-78 260-311 (428)
153 PLN00028 nitrate transmembrane 97.3 0.00062 1.3E-08 44.3 4.5 37 21-57 282-318 (476)
154 PRK10504 putative transporter; 97.2 0.0011 2.4E-08 42.7 5.3 56 21-76 291-346 (471)
155 TIGR00792 gph sugar (Glycoside 97.2 0.0013 2.9E-08 41.8 5.6 53 25-77 255-307 (437)
156 PRK10489 enterobactin exporter 97.2 0.00062 1.3E-08 43.3 3.9 60 21-80 253-312 (417)
157 PRK05122 major facilitator sup 97.1 0.0017 3.7E-08 40.9 5.2 53 28-80 250-302 (399)
158 PRK15034 nitrate/nitrite trans 97.1 0.002 4.3E-08 42.3 5.5 38 35-72 294-331 (462)
159 PRK09874 drug efflux system pr 97.1 0.0014 3.1E-08 41.2 4.8 51 30-80 261-311 (408)
160 TIGR00887 2A0109 phosphate:H+ 97.1 0.0011 2.4E-08 43.3 4.3 40 36-75 344-383 (502)
161 PRK09669 putative symporter Ya 97.1 0.00085 1.8E-08 43.1 3.8 58 21-78 39-101 (444)
162 PF05977 MFS_3: Transmembrane 97.1 0.0019 4E-08 43.0 5.3 53 22-74 40-92 (524)
163 PF03137 OATP: Organic Anion T 97.1 0.00014 3E-09 48.3 0.0 71 3-76 17-87 (539)
164 TIGR02718 sider_RhtX_FptX side 97.1 0.0017 3.7E-08 40.9 4.8 47 21-67 237-284 (390)
165 COG2270 Permeases of the major 96.9 0.0015 3.3E-08 42.4 3.8 55 21-75 282-336 (438)
166 PRK11902 ampG muropeptide tran 96.9 0.0027 5.9E-08 40.3 5.0 50 21-70 239-289 (402)
167 PRK12382 putative transporter; 96.9 0.002 4.3E-08 40.6 4.4 52 29-80 251-302 (392)
168 KOG2533|consensus 96.9 0.0021 4.5E-08 42.5 4.3 65 20-84 74-138 (495)
169 TIGR00788 fbt folate/biopterin 96.9 0.0012 2.5E-08 43.1 3.0 46 21-67 55-105 (468)
170 KOG0254|consensus 96.8 0.0037 8.1E-08 41.1 5.3 48 30-77 332-379 (513)
171 PRK10429 melibiose:sodium symp 96.8 0.0041 8.8E-08 40.5 5.4 49 25-73 264-312 (473)
172 PRK09848 glucuronide transport 96.8 0.0044 9.5E-08 39.9 5.4 57 21-77 258-314 (448)
173 PF11700 ATG22: Vacuole efflux 96.8 0.004 8.7E-08 41.0 5.1 53 21-73 311-365 (477)
174 PF01306 LacY_symp: LacY proto 96.8 0.0019 4E-08 41.8 3.5 43 21-63 37-79 (412)
175 TIGR02332 HpaX 4-hydroxyphenyl 96.8 0.0034 7.3E-08 40.2 4.6 37 23-59 275-311 (412)
176 TIGR00885 fucP L-fucose:H+ sym 96.7 0.008 1.7E-07 38.6 6.1 54 26-79 268-321 (410)
177 PRK10429 melibiose:sodium symp 96.7 0.0027 5.8E-08 41.3 4.0 55 21-75 36-95 (473)
178 TIGR00893 2A0114 d-galactonate 96.7 0.0021 4.6E-08 39.7 3.3 38 21-58 245-282 (399)
179 PRK08633 2-acyl-glycerophospho 96.7 0.0018 3.9E-08 45.9 3.2 59 21-79 262-321 (1146)
180 PRK10213 nepI ribonucleoside t 96.7 0.0044 9.5E-08 39.4 4.7 41 21-61 246-286 (394)
181 COG0477 ProP Permeases of the 96.7 0.0036 7.7E-08 36.8 3.9 53 27-79 39-91 (338)
182 PRK11043 putative transporter; 96.6 0.0063 1.4E-07 38.5 5.1 46 21-66 232-277 (401)
183 PF05977 MFS_3: Transmembrane 96.6 0.0025 5.4E-08 42.4 3.2 62 21-82 248-309 (524)
184 COG2211 MelB Na+/melibiose sym 96.6 0.0075 1.6E-07 39.7 5.3 58 21-78 266-323 (467)
185 PRK11195 lysophospholipid tran 96.6 0.0038 8.2E-08 39.7 3.9 44 21-64 235-278 (393)
186 KOG0253|consensus 96.6 0.0047 1E-07 40.2 4.1 43 36-78 390-432 (528)
187 PRK09848 glucuronide transport 96.5 0.0037 8.1E-08 40.2 3.6 49 21-69 38-91 (448)
188 TIGR00898 2A0119 cation transp 96.5 0.011 2.4E-07 38.5 5.4 44 36-79 364-407 (505)
189 KOG2504|consensus 96.5 0.0057 1.2E-07 40.6 4.1 63 21-83 327-391 (509)
190 PF01306 LacY_symp: LacY proto 96.4 0.0047 1E-07 40.0 3.4 62 23-84 255-316 (412)
191 PF07690 MFS_1: Major Facilita 96.4 0.0063 1.4E-07 37.3 3.7 55 21-75 236-291 (352)
192 PRK11462 putative transporter; 96.2 0.022 4.8E-07 37.2 5.7 40 28-67 264-303 (460)
193 TIGR00712 glpT glycerol-3-phos 96.2 0.012 2.5E-07 37.9 4.3 37 21-57 281-317 (438)
194 PRK09669 putative symporter Ya 96.1 0.025 5.5E-07 36.5 5.7 42 28-69 265-306 (444)
195 PRK11663 regulatory protein Uh 96.1 0.028 6E-07 36.2 5.6 34 21-54 273-306 (434)
196 PRK11273 glpT sn-glycerol-3-ph 96.0 0.022 4.9E-07 36.8 5.0 38 21-58 283-322 (452)
197 KOG4686|consensus 95.7 0.0094 2E-07 37.7 2.3 47 20-66 293-339 (459)
198 COG2271 UhpC Sugar phosphate p 95.7 0.036 7.8E-07 36.3 4.9 58 21-78 282-342 (448)
199 TIGR00926 2A1704 Peptide:H+ sy 95.6 0.029 6.3E-07 38.5 4.6 70 5-77 4-74 (654)
200 TIGR00881 2A0104 phosphoglycer 95.6 0.022 4.7E-07 35.2 3.7 35 21-55 246-280 (379)
201 PF13347 MFS_2: MFS/sugar tran 95.6 0.0046 1E-07 39.6 0.6 57 21-77 31-92 (428)
202 PRK10054 putative transporter; 95.5 0.026 5.7E-07 35.9 3.9 55 22-76 239-293 (395)
203 TIGR00892 2A0113 monocarboxyla 95.4 0.043 9.3E-07 35.7 4.6 61 21-81 270-334 (455)
204 TIGR00788 fbt folate/biopterin 94.9 0.1 2.3E-06 34.2 5.3 55 20-74 281-335 (468)
205 TIGR00894 2A0114euk Na(+)-depe 94.6 0.047 1E-06 35.4 3.2 37 21-57 291-327 (465)
206 TIGR00805 oat sodium-independe 94.6 0.073 1.6E-06 36.4 4.1 51 21-71 360-413 (633)
207 COG0738 FucP Fucose permease [ 94.5 0.056 1.2E-06 35.2 3.2 59 22-80 267-325 (422)
208 KOG2563|consensus 94.3 0.11 2.5E-06 34.3 4.4 58 21-79 74-131 (480)
209 COG2807 CynX Cyanate permease 94.3 0.12 2.7E-06 33.4 4.5 59 21-79 237-296 (395)
210 PF05978 UNC-93: Ion channel r 94.3 0.26 5.7E-06 27.9 5.4 43 32-74 42-84 (156)
211 KOG3626|consensus 94.3 0.005 1.1E-07 42.5 -1.8 72 3-77 111-182 (735)
212 KOG2816|consensus 94.2 0.2 4.4E-06 33.2 5.3 42 37-78 72-113 (463)
213 PRK11646 multidrug resistance 94.0 0.19 4.1E-06 32.2 4.9 58 24-81 240-298 (400)
214 PRK06814 acylglycerophosphoeth 93.7 0.1 2.3E-06 37.5 3.6 52 21-72 255-306 (1140)
215 PF00083 Sugar_tr: Sugar (and 93.6 0.0046 9.9E-08 39.6 -2.9 39 36-74 295-333 (451)
216 KOG2325|consensus 93.3 0.21 4.6E-06 33.3 4.4 54 21-74 65-119 (488)
217 KOG4332|consensus 92.9 0.038 8.1E-07 34.8 0.4 59 21-80 66-124 (454)
218 KOG2533|consensus 92.5 0.27 5.8E-06 32.9 4.0 49 22-70 304-356 (495)
219 PF11700 ATG22: Vacuole efflux 92.3 0.37 8E-06 32.0 4.5 49 29-77 72-121 (477)
220 PF03092 BT1: BT1 family; Int 92.2 0.18 3.9E-06 32.9 2.9 57 21-78 19-80 (433)
221 PRK11652 emrD multidrug resist 92.0 0.77 1.7E-05 29.0 5.5 38 21-58 237-274 (394)
222 TIGR00880 2_A_01_02 Multidrug 90.9 0.28 6E-06 25.7 2.4 46 27-72 87-132 (141)
223 PRK11462 putative transporter; 90.4 0.76 1.6E-05 30.2 4.5 58 21-78 39-101 (460)
224 KOG0252|consensus 89.9 0.38 8.2E-06 32.3 2.7 42 38-79 359-400 (538)
225 KOG0637|consensus 89.4 0.12 2.7E-06 34.3 0.3 61 21-81 61-126 (498)
226 KOG2532|consensus 89.3 0.72 1.6E-05 30.7 3.7 36 21-56 288-323 (466)
227 KOG4686|consensus 89.3 0.17 3.7E-06 32.3 0.8 70 5-75 58-128 (459)
228 KOG3764|consensus 88.9 0.21 4.5E-06 32.9 1.0 63 22-84 301-365 (464)
229 TIGR00903 2A0129 major facilit 88.8 1.7 3.6E-05 27.8 5.0 39 12-57 215-253 (368)
230 PF03209 PUCC: PUCC protein; 87.7 2.8 6.2E-05 27.6 5.5 57 21-77 238-295 (403)
231 PF03825 Nuc_H_symport: Nucleo 87.3 0.58 1.2E-05 30.4 2.3 54 24-77 240-293 (400)
232 COG2270 Permeases of the major 87.3 2.6 5.5E-05 28.0 5.1 52 28-79 59-111 (438)
233 TIGR00769 AAA ADP/ATP carrier 87.1 3.7 7.9E-05 27.6 5.9 53 25-77 41-94 (472)
234 PRK15403 multidrug efflux syst 87.0 2.6 5.6E-05 27.2 5.1 38 21-58 248-286 (413)
235 KOG2816|consensus 86.7 3.5 7.5E-05 27.6 5.6 63 21-83 271-334 (463)
236 TIGR00924 yjdL_sub1_fam amino 85.6 3.1 6.8E-05 27.5 5.0 45 28-72 142-186 (475)
237 KOG3574|consensus 83.9 1.3 2.8E-05 29.4 2.6 55 2-62 44-103 (510)
238 PF03209 PUCC: PUCC protein; 83.2 3.4 7.5E-05 27.2 4.3 54 21-75 9-68 (403)
239 PRK09584 tppB putative tripept 82.3 6.8 0.00015 26.2 5.6 43 29-71 152-194 (500)
240 PF01770 Folate_carrier: Reduc 82.0 7.2 0.00016 25.8 5.4 60 22-81 35-95 (412)
241 PF06963 FPN1: Ferroportin1 (F 81.6 4.1 8.8E-05 27.0 4.3 47 22-68 288-334 (432)
242 TIGR01272 gluP glucose/galacto 81.5 3.6 7.8E-05 25.6 3.9 33 30-62 267-299 (310)
243 COG2211 MelB Na+/melibiose sym 81.4 4.7 0.0001 27.1 4.5 59 21-79 42-105 (467)
244 PRK15462 dipeptide/tripeptide 80.1 7.1 0.00015 26.4 5.1 47 28-74 139-185 (493)
245 KOG3098|consensus 79.3 7 0.00015 26.3 4.8 46 33-78 56-101 (461)
246 KOG0255|consensus 79.3 10 0.00022 25.2 5.6 41 40-80 363-403 (521)
247 PF02694 UPF0060: Uncharacteri 79.1 4.4 9.5E-05 21.7 3.2 53 25-77 52-104 (107)
248 PRK10207 dipeptide/tripeptide 78.9 8.1 0.00018 25.8 5.1 41 28-68 144-184 (489)
249 PRK02237 hypothetical protein; 76.6 8.2 0.00018 20.7 3.7 52 27-78 56-107 (109)
250 TIGR01301 GPH_sucrose GPH fami 75.6 13 0.00028 25.1 5.3 45 34-78 312-357 (477)
251 COG1268 BioY Uncharacterized c 75.1 7.3 0.00016 22.9 3.6 21 36-56 91-111 (184)
252 PF02632 BioY: BioY family; I 74.3 8.9 0.00019 21.6 3.8 22 36-57 62-83 (148)
253 KOG2563|consensus 70.2 9.7 0.00021 25.8 3.7 36 23-58 297-332 (480)
254 PF13000 Acatn: Acetyl-coenzym 68.8 2 4.3E-05 29.3 0.4 60 2-62 13-75 (544)
255 PF06963 FPN1: Ferroportin1 (F 67.7 25 0.00053 23.5 5.2 39 37-75 48-86 (432)
256 KOG3762|consensus 65.9 3.7 8.1E-05 28.4 1.2 63 21-83 400-462 (618)
257 PF13493 DUF4118: Domain of un 58.0 12 0.00027 19.2 2.2 18 40-57 88-105 (105)
258 PF03137 OATP: Organic Anion T 55.8 3.8 8.2E-05 27.9 0.0 37 21-57 335-372 (539)
259 KOG3098|consensus 55.1 16 0.00036 24.6 2.8 41 36-76 288-331 (461)
260 PF10785 NADH-u_ox-rdase: NADH 54.2 29 0.00063 17.7 4.3 39 41-79 32-77 (86)
261 PF03092 BT1: BT1 family; Int 53.2 44 0.00096 22.1 4.5 49 24-72 252-300 (433)
262 COG3104 PTR2 Dipeptide/tripept 50.1 47 0.001 22.8 4.3 47 31-77 159-205 (498)
263 PF04790 Sarcoglycan_1: Sarcog 49.9 23 0.0005 22.1 2.7 33 54-86 7-39 (264)
264 COG3202 ATP/ADP translocase [E 46.7 97 0.0021 21.5 5.7 54 23-76 57-111 (509)
265 KOG1237|consensus 46.1 50 0.0011 23.0 4.0 57 21-77 67-124 (571)
266 PF09605 Trep_Strep: Hypotheti 43.6 67 0.0015 18.8 4.4 39 37-75 38-76 (186)
267 PF06898 YqfD: Putative stage 42.9 38 0.00083 22.2 3.0 26 49-74 79-104 (385)
268 PF07698 7TM-7TMR_HD: 7TM rece 42.8 66 0.0014 18.5 4.7 38 39-76 109-146 (194)
269 PF00854 PTR2: POT family; In 42.8 88 0.0019 19.9 4.9 49 29-77 74-122 (372)
270 COG2119 Predicted membrane pro 42.7 73 0.0016 19.0 5.1 35 37-71 144-178 (190)
271 TIGR02876 spore_yqfD sporulati 42.4 42 0.00092 22.0 3.1 26 49-74 76-101 (382)
272 KOG3097|consensus 41.7 1E+02 0.0022 20.5 4.6 47 23-69 306-352 (390)
273 PF01925 TauE: Sulfite exporte 41.5 75 0.0016 18.8 5.2 28 36-63 202-229 (240)
274 COG1470 Predicted membrane pro 41.0 23 0.0005 24.1 1.8 9 49-57 505-513 (513)
275 KOG3626|consensus 40.9 33 0.00071 24.8 2.6 37 21-57 422-459 (735)
276 KOG1330|consensus 39.2 52 0.0011 22.6 3.2 33 24-56 280-312 (493)
277 KOG4830|consensus 38.3 19 0.00042 23.0 1.1 41 21-61 46-95 (412)
278 PF01770 Folate_carrier: Reduc 37.1 1.3E+02 0.0028 20.2 5.2 54 28-81 286-341 (412)
279 PRK03612 spermidine synthase; 35.1 54 0.0012 22.5 2.9 35 27-61 145-180 (521)
280 PF03911 Sec61_beta: Sec61beta 34.6 47 0.001 14.4 1.8 7 55-61 19-25 (41)
281 TIGR00813 sss transporter, SSS 33.4 80 0.0017 20.6 3.4 19 48-66 70-88 (407)
282 PF03219 TLC: TLC ATP/ADP tran 32.8 1.7E+02 0.0036 20.2 5.8 52 25-76 56-108 (491)
283 PRK11469 hypothetical protein; 32.8 1.1E+02 0.0023 18.0 4.4 26 46-71 154-179 (188)
284 PF12911 OppC_N: N-terminal TM 32.7 55 0.0012 14.7 2.7 26 51-76 9-34 (56)
285 PRK03612 spermidine synthase; 32.6 1.7E+02 0.0036 20.2 5.3 36 22-57 45-80 (521)
286 PF10518 TAT_signal: TAT (twin 31.8 41 0.0009 12.9 2.7 17 53-69 1-17 (26)
287 PF08129 Antimicrobial17: Alph 31.6 51 0.0011 15.0 1.7 23 36-58 34-56 (57)
288 KOG0637|consensus 31.5 48 0.001 22.8 2.2 49 30-78 335-383 (498)
289 COG1738 yhhQ Uncharacterized m 31.0 1.2E+02 0.0026 18.7 3.7 34 41-74 63-99 (233)
290 PF02592 DUF165: Uncharacteriz 30.2 1E+02 0.0023 17.1 3.6 19 43-61 10-28 (145)
291 PF06609 TRI12: Fungal trichot 29.9 1.8E+02 0.0038 20.7 4.6 47 28-74 350-397 (599)
292 PF08080 zf-RNPHF: RNPHF zinc 29.4 18 0.00039 15.3 0.0 10 51-60 3-12 (36)
293 PRK13595 ubiA prenyltransferas 29.1 1E+02 0.0022 19.7 3.2 32 49-80 204-235 (292)
294 PF13334 DUF4094: Domain of un 28.8 96 0.0021 16.2 2.8 20 56-75 2-21 (95)
295 PF06374 NDUF_C2: NADH-ubiquin 27.7 89 0.0019 17.1 2.4 20 45-64 36-55 (117)
296 PRK11212 hypothetical protein; 26.4 1.5E+02 0.0033 17.9 3.5 26 37-62 46-71 (210)
297 PF04474 DUF554: Protein of un 26.3 1.6E+02 0.0035 18.0 3.7 36 36-71 11-46 (226)
298 PF02827 PKI: cAMP-dependent p 26.2 15 0.00032 18.3 -0.6 11 50-60 12-22 (74)
299 TIGR00806 rfc RFC reduced fola 25.9 2.1E+02 0.0045 20.0 4.3 54 28-81 299-354 (511)
300 PF14068 YuiB: Putative membra 25.6 38 0.00083 18.0 0.8 28 30-57 70-97 (102)
301 TIGR00697 conserved hypothetic 25.4 1.6E+02 0.0034 17.6 3.8 25 38-62 37-61 (202)
302 PHA02047 phage lambda Rz1-like 24.8 60 0.0013 17.1 1.4 22 61-82 7-28 (101)
303 PF06072 Herpes_US9: Alphaherp 23.1 1E+02 0.0023 14.7 2.8 22 56-77 28-49 (60)
304 PF01694 Rhomboid: Rhomboid fa 22.8 1.4E+02 0.003 16.0 3.6 30 46-75 32-61 (145)
305 PF05875 Ceramidase: Ceramidas 22.4 2E+02 0.0043 17.6 5.3 34 20-53 16-49 (262)
306 PF02659 DUF204: Domain of unk 22.2 1.1E+02 0.0023 14.4 4.0 28 38-65 35-62 (67)
307 COG1742 Uncharacterized conser 22.1 54 0.0012 17.6 0.9 43 29-71 57-99 (109)
308 PF08144 CPL: CPL (NUC119) dom 21.9 18 0.00038 20.4 -0.9 9 51-59 2-10 (148)
309 KOG2615|consensus 21.2 1.6E+02 0.0034 20.1 3.0 57 21-77 291-349 (451)
310 PF12670 DUF3792: Protein of u 21.1 1.5E+02 0.0033 15.8 5.0 38 23-64 33-71 (116)
311 PF06237 DUF1011: Protein of u 21.1 1.5E+02 0.0033 15.8 4.6 49 5-54 17-65 (101)
312 COG5336 Uncharacterized protei 21.0 1.6E+02 0.0035 16.0 4.5 18 38-55 53-70 (116)
313 COG3865 Uncharacterized protei 21.0 27 0.0006 19.8 -0.3 18 44-61 105-122 (151)
314 PRK01253 preprotein translocas 20.4 58 0.0013 15.1 0.8 12 55-66 30-41 (54)
315 COG4723 Phage-related protein, 20.4 48 0.001 19.7 0.6 19 47-66 11-29 (198)
316 COG4708 Predicted membrane pro 20.4 76 0.0017 18.2 1.4 22 37-58 144-165 (169)
317 PRK10907 intramembrane serine 20.3 2.2E+02 0.0049 17.9 3.5 37 39-75 153-190 (276)
No 1
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.18 E-value=3.1e-11 Score=75.85 Aligned_cols=74 Identities=9% Similarity=-0.099 Sum_probs=67.6
Q ss_pred eccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 7 WTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
...+..|.+++ +++.+.++.++..+.+.++..+++++.|++.||+|||+++..+..+..++.+.+++++++..+
T Consensus 27 ~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~l 100 (393)
T PRK09705 27 SVGPLLPQLRQ---ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALL 100 (393)
T ss_pred ccchhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHH
Confidence 34566777777 899999999999999999999999999999999999999999999999999999999987654
No 2
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.10 E-value=6.3e-11 Score=72.84 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=64.5
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
.+..|.+.+ +++.++++.++..+.+.++..++.++.|+++||+|||+++..+..+..++.+.++++++++.+
T Consensus 23 ~~~~~~~~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (377)
T TIGR00890 23 TLLAPPLGR---YFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAAL 94 (377)
T ss_pred hhHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345666766 889999999999999999999999999999999999999999999999999999988887654
No 3
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.07 E-value=1.3e-10 Score=72.69 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=67.6
Q ss_pred eeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 4 ILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
..+..++..|.+++ +++.++.+.++..+.+.++..+++++.|+++||+|||+.+..+..+..++....+++++++.+
T Consensus 21 ~~~~~~~~lp~~~~---~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (381)
T PRK03633 21 AIAVLNTLVPLWLA---QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSW 97 (381)
T ss_pred hhhhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34556677787877 789999999999999999999999999999999999999999999999998888888887553
No 4
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.07 E-value=9.2e-11 Score=73.37 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=65.9
Q ss_pred ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540 8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHG 84 (87)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~ 84 (87)
..+.+|.+.+ +++.+.++.++..+...++..+++++.|+++||+|||+++..+..+..++.++++++++++.+.
T Consensus 22 ~~~~l~~~~~---~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~ 95 (382)
T PRK10091 22 IMGVLTELAH---DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLA 95 (382)
T ss_pred HHhChHHHHH---HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 3456677776 8899999999999999999999999999999999999999999999999999999998876543
No 5
>PRK03545 putative arabinose transporter; Provisional
Probab=99.04 E-value=4e-10 Score=70.60 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=63.4
Q ss_pred ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
+..|.+.+ +++.++++.++..+.+.++..++.++.|++.||+|||+++..+..+..++.+.+.++++++.+
T Consensus 30 ~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l 100 (390)
T PRK03545 30 GLLSDIAQ---SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVL 100 (390)
T ss_pred cchHHHHh---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 44566666 899999999999999999999999999999999999999999999999999999998887654
No 6
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.04 E-value=4.2e-10 Score=71.28 Aligned_cols=70 Identities=7% Similarity=0.026 Sum_probs=62.6
Q ss_pred cccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 11 AGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
..|.+++ +++.+.++.++..+.+.++..+++++.|++.||+|||+++..+.++..++...++++++++.+
T Consensus 30 ~~~~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (412)
T TIGR02332 30 AGLTMGK---DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESL 99 (412)
T ss_pred HHHhhHh---hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3455555 899999999999999999999999999999999999999999999999999999998887654
No 7
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.03 E-value=1.7e-10 Score=71.78 Aligned_cols=72 Identities=18% Similarity=0.118 Sum_probs=63.1
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
.+..|.+++ +++.++.+.+++.+...++..++.++.|+++||+|||+++..+..+..++.+.+.++++++.+
T Consensus 32 ~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (405)
T TIGR00891 32 ALVLAEVAG---EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITM 103 (405)
T ss_pred HHHHHHHHH---HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 445566666 889999999999999999999999999999999999999999999999988888888876543
No 8
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.02 E-value=4.4e-10 Score=71.05 Aligned_cols=73 Identities=21% Similarity=0.181 Sum_probs=67.0
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHG 84 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~ 84 (87)
.+.+|.+.+ +++.++.+.+++.+.+.++..++.|+...+.||+.||++++....++.++.+++++++|++.+.
T Consensus 33 ~gLLp~iA~---dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll 105 (394)
T COG2814 33 VGLLPPIAA---DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLL 105 (394)
T ss_pred HhchHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 345666666 8999999999999999999999999999999999999999999999999999999999997653
No 9
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.01 E-value=4.3e-10 Score=72.66 Aligned_cols=72 Identities=18% Similarity=0.065 Sum_probs=64.8
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
+...|.+.+ +++.++++.+|..+.+.++.....++.|+++||+|||+++..+..+..++.+.++.+++++.+
T Consensus 26 ~~a~p~i~~---~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~l 97 (495)
T PRK14995 26 HVAAPTLSM---TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWL 97 (495)
T ss_pred HHHHHHHHH---HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 445677766 899999999999999999999999999999999999999999999999999999999887654
No 10
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.99 E-value=6e-10 Score=70.62 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=63.8
Q ss_pred ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
..|.+|.+.+ +++.++.+.++..+++.++..++.++.|+++||+|||+++..+..+..++.+.+..+++++.+
T Consensus 35 ~~p~l~~i~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l 107 (413)
T PRK15403 35 IQPGIINVVR---DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQF 107 (413)
T ss_pred hccCHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4455566655 788999999999999999999999999999999999999999999999999999988887554
No 11
>TIGR00898 2A0119 cation transport protein.
Probab=98.99 E-value=9.5e-10 Score=70.84 Aligned_cols=70 Identities=24% Similarity=0.354 Sum_probs=61.7
Q ss_pred cccccccCCCCCccc---cchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 11 AGDRLIAGEYPFPVT---ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 11 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
..|.+.+ +++++ +.+.++..+++.++..++.++.|+++||+|||+++..+.++..++.+..+++++++.+
T Consensus 111 ~~~~i~~---e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (505)
T TIGR00898 111 FSSTIVT---EWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF 183 (505)
T ss_pred ccccEEE---EecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 3455555 78888 7889999999999999999999999999999999999999999999999988887654
No 12
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.97 E-value=2.5e-10 Score=77.08 Aligned_cols=73 Identities=18% Similarity=0.139 Sum_probs=63.6
Q ss_pred ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
.+.++|.+.. +++++..+.+++.++..++..++++++|+++||+|||++++++.++..++.++++++++++.+
T Consensus 186 is~ilp~i~~---~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~l 258 (742)
T TIGR01299 186 VGFVLPSAEK---DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFF 258 (742)
T ss_pred HHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3445566666 788999999999999999999999999999999999999999999999999988888876554
No 13
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.96 E-value=1.2e-09 Score=69.77 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=58.5
Q ss_pred ceeeeeccccccccccC-----CCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 2 GTILGWTSPAGDRLIAG-----EYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 2 g~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
|+..++.++..|.+++. ..+++.++++.++..+.+.++..+++++.|+++||+|||+++..+..+..++.+.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~ 104 (479)
T PRK10077 25 GYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAW 104 (479)
T ss_pred CcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555544442 1234778889999999999999999999999999999999999999998887776665
No 14
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.95 E-value=3.8e-10 Score=71.17 Aligned_cols=72 Identities=26% Similarity=0.296 Sum_probs=62.7
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
.+..|.+++ +++.++.+.++..+...++..++.++.|+++||+|||+++..+.....++...++++++++.+
T Consensus 38 ~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l 109 (426)
T PRK12307 38 FYIMYLIKA---DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIML 109 (426)
T ss_pred HHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344555555 789999999999999999999999999999999999999999999999999888888776543
No 15
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.95 E-value=5.6e-10 Score=69.21 Aligned_cols=74 Identities=20% Similarity=0.143 Sum_probs=64.4
Q ss_pred eccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 7 WTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
...+..|.+.+ +++.++++.++..+...++..++.++.|+++||+|||+.+..+..+..++.+....+++++.+
T Consensus 23 ~~~~~~p~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (385)
T TIGR00710 23 MYLPAFPEIAA---DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETL 96 (385)
T ss_pred HhcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 34556677766 889999999999999999999999999999999999999999999999888888888776543
No 16
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.95 E-value=4.9e-10 Score=71.09 Aligned_cols=72 Identities=17% Similarity=0.090 Sum_probs=64.5
Q ss_pred ceeeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 2 GTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
|+.++...+..|.+++ +++.++.+.+++.+...++..++.++.+++.||+|||+++..+..+..++..++..
T Consensus 16 G~~~~~~~~l~~~~~~---~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~ 87 (410)
T TIGR00885 16 GFANDITNPMVPQFQQ---AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWP 87 (410)
T ss_pred HHHHHhHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888 89999999999999999999999999999999999999999999999888877644
No 17
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.94 E-value=1.2e-09 Score=67.42 Aligned_cols=72 Identities=18% Similarity=0.113 Sum_probs=62.8
Q ss_pred cccccc-cccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc-ccccc
Q psy15540 9 SPAGDR-LIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ-SVSRH 83 (87)
Q Consensus 9 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~-~~~~l 83 (87)
.+..|. +++ +++.++.+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.+..++++ +++.+
T Consensus 21 ~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~ 94 (366)
T TIGR00886 21 SPLAVQMIKD---DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVL 94 (366)
T ss_pred HHhhhHHHHH---HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 445563 555 8899999999999999999999999999999999999999999999999998888887 66543
No 18
>KOG0254|consensus
Probab=98.93 E-value=2.5e-09 Score=69.50 Aligned_cols=79 Identities=33% Similarity=0.346 Sum_probs=63.2
Q ss_pred eeeccccccccccCCC--CCcccc--chhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540 5 LGWTSPAGDRLIAGEY--PFPVTE--SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80 (87)
Q Consensus 5 ~g~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~ 80 (87)
.|+.+++...++.... +...+. .+.+++.+...+++.+++++.|.++|++|||++++.+.+.+.++.+++++++|.
T Consensus 63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~ 142 (513)
T KOG0254|consen 63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSW 142 (513)
T ss_pred cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4566666666655311 112222 355999999999999999999999999999999999999999999999999987
Q ss_pred ccc
Q psy15540 81 SRH 83 (87)
Q Consensus 81 ~~l 83 (87)
.++
T Consensus 143 ~~l 145 (513)
T KOG0254|consen 143 YQL 145 (513)
T ss_pred HHH
Confidence 654
No 19
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.92 E-value=5.6e-10 Score=70.03 Aligned_cols=72 Identities=18% Similarity=0.166 Sum_probs=61.7
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
....|.+.+ +++.++++.+++.+...++..+++++.|+++||+|||+++..+..+..++.+...++++++.+
T Consensus 35 ~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (406)
T PRK11551 35 GVAAPRMAQ---EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSL 106 (406)
T ss_pred HHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHH
Confidence 344556666 789999999999999999999999999999999999999999998888888888887776543
No 20
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.92 E-value=6.7e-10 Score=70.92 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=64.4
Q ss_pred eccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 7 WTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
..++..|.+.+ +++.++++.++..+.+.++..++.++.|+++||+|||+.+..+..+..++...+..++++..+
T Consensus 20 ~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (485)
T TIGR00711 20 IVNVAIPTIAG---DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELM 93 (485)
T ss_pred HHHHHHHHHHH---hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHH
Confidence 34455666666 889999999999999999999999999999999999999999999999999988888776543
No 21
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.92 E-value=2.2e-09 Score=67.72 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=61.4
Q ss_pred cccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 11 AGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
..|.+.+ +++.++++.++..+...++..++.++.|++.||+|||+.+..+.++..++.+...++++++.+
T Consensus 42 ~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 111 (394)
T PRK10213 42 LLTPMAQ---DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLL 111 (394)
T ss_pred hHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHH
Confidence 3455555 789999999999999999999999999999999999999999999999998888888776654
No 22
>PRK10133 L-fucose transporter; Provisional
Probab=98.92 E-value=4.9e-10 Score=71.62 Aligned_cols=73 Identities=14% Similarity=0.077 Sum_probs=62.4
Q ss_pred eccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH---HHhccccc
Q psy15540 7 WTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI---IWSQSVSR 82 (87)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~---~~a~~~~~ 82 (87)
...+..|.+++ +++.++++.++..+.+.++..++.++.|++.||+|||+++..+..+..++.+++ ..++++..
T Consensus 44 ~~~~~~p~i~~---~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ 119 (438)
T PRK10133 44 LNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTL 119 (438)
T ss_pred HHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 34455677766 899999999999999999999999999999999999999999999999988775 34566654
No 23
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.91 E-value=1.2e-09 Score=67.82 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=64.6
Q ss_pred eeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 6 GWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
+...|..|.+.+ +++.++++.++..+...++..++.++.|+++||+|||+.+..+..+..++......+++++.
T Consensus 8 ~~~~p~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (377)
T PRK11102 8 DMYLPALPVIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQ 81 (377)
T ss_pred HHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 344567777777 78999999999999999999999999999999999999999999999988888888777644
No 24
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.91 E-value=1.2e-09 Score=67.23 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=62.2
Q ss_pred ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
...|.+.+ +++.++++.+++.+...++..++.++.|+++||+|||+.+..+..+..++.++..++++++.+
T Consensus 16 ~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (379)
T TIGR00881 16 LAMPYLVE---EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVM 86 (379)
T ss_pred hhhHHHHH---HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34456666 789999999999999999999999999999999999999999999999999888888776543
No 25
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.90 E-value=2.4e-09 Score=67.08 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=61.7
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
.+..|.+.+ +++.++.+.++..+...++..++.++.|+++||+|||+.+..+.....++......++++..
T Consensus 28 ~p~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (394)
T PRK11652 28 VPAIADMAR---DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTV 98 (394)
T ss_pred hccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 345566666 88999999999999999999999999999999999999999999888888888887776543
No 26
>PRK03699 putative transporter; Provisional
Probab=98.90 E-value=2.1e-09 Score=67.59 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=62.3
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
.+..|.+.+ +++.++++.++..+...++..++.++.|++.||+|||+++..+.++..++.....++++++.+
T Consensus 27 g~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~ 98 (394)
T PRK03699 27 GMVMGPIAE---YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALF 98 (394)
T ss_pred hhhhHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHH
Confidence 344566666 789999999999999999999999999999999999999999999988888888888776543
No 27
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.89 E-value=2.2e-09 Score=67.35 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=50.3
Q ss_pred ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHH
Q psy15540 8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVG 70 (87)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 70 (87)
..+..|.+.+ ++++++.+.+++.+.+.++..+++++.|+++||+|||+++..+......+
T Consensus 10 ~~~~lp~i~~---~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 69 (368)
T TIGR00903 10 FSPVLSLVAE---DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAA 69 (368)
T ss_pred HHhhHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 4566777777 89999999999999999999999999999999999998766555544443
No 28
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.88 E-value=2.2e-09 Score=67.55 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=61.0
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
.+..|.+.+ +++.++++.++..+.+.++..++.++.|+++||+|||+.+..+.....++.+....+++++.
T Consensus 33 ~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (406)
T PRK15402 33 QPGMLAVVE---DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQ 103 (406)
T ss_pred hcchHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 344555555 78999999999999999999999999999999999999999999888888888888777654
No 29
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.88 E-value=3.1e-09 Score=65.80 Aligned_cols=70 Identities=10% Similarity=0.047 Sum_probs=59.1
Q ss_pred ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540 8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~ 81 (87)
..+..|.+++ +++.++++.++..+...++..++.++.|+++||+|||+++..+.+...++.... .+++.+
T Consensus 19 ~~~~lp~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~ 88 (355)
T TIGR00896 19 VGPLLPQIRS---ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTA 88 (355)
T ss_pred CcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHH
Confidence 4566777777 899999999999999999999999999999999999999999887777766655 444443
No 30
>PRK11043 putative transporter; Provisional
Probab=98.88 E-value=2.3e-09 Score=67.29 Aligned_cols=71 Identities=25% Similarity=0.264 Sum_probs=61.1
Q ss_pred ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
|..|.+.+ +++.++++.++..++..++..++.++.|+++||+|||+.+..+..+..++.....++++++.+
T Consensus 27 p~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (401)
T PRK11043 27 PAFKAIQA---DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQL 97 (401)
T ss_pred hhHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 44455555 789999999999999999999999999999999999999999998888888888887776543
No 31
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.86 E-value=2e-09 Score=69.06 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=54.5
Q ss_pred ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
...|.+.+ +++.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..+..+..+.
T Consensus 50 ~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~ 113 (467)
T PRK09556 50 AAQNDMIS---TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGA 113 (467)
T ss_pred hhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHH
Confidence 44566666 89999999999999999999999999999999999999998887777766655554
No 32
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.84 E-value=2.9e-09 Score=65.12 Aligned_cols=70 Identities=24% Similarity=0.352 Sum_probs=57.8
Q ss_pred ccccc-ccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540 9 SPAGD-RLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 9 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~ 81 (87)
.+..| .+.+ +++.++++.+++.+...++..++.++.|+++||+|||+++..+.++..++.....++++.+
T Consensus 16 ~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~ 86 (352)
T PF07690_consen 16 SPALPLYLAE---ELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFW 86 (352)
T ss_dssp HHHHH-HHHC---CSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHH
Confidence 34455 5555 8899999999999999999999999999999999999999999999988866666655544
No 33
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.84 E-value=2.7e-09 Score=65.73 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=61.6
Q ss_pred ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
...|.+++ +++.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..++....+++++++.+
T Consensus 15 ~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (399)
T TIGR00893 15 FAAPMLQE---DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSL 85 (399)
T ss_pred HhHHHHHH---hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHH
Confidence 34455655 789999999999999999999999999999999999999999999988888888887776543
No 34
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.84 E-value=4.8e-09 Score=67.69 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=61.5
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
.+..|.+++ +++++..+.++..+...++..++.++.|+++||+|||+++..+.+...++.++.++++++..+
T Consensus 56 ~~~~~~l~~---~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l 127 (476)
T PLN00028 56 APLLPIIRD---NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGF 127 (476)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 344566666 889999999999999999999999999999999999999999988888888888887776543
No 35
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.83 E-value=1.8e-09 Score=69.33 Aligned_cols=72 Identities=18% Similarity=0.161 Sum_probs=62.2
Q ss_pred ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
..+..|.+.+ ++++++++.+++.+...++..++.++.|+++||+|||+.+..+..+..++.+...++++++.
T Consensus 39 ~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (496)
T PRK03893 39 ITLVLTEVQG---EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWT 110 (496)
T ss_pred HHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3445566666 78999999999999999999999999999999999999999999888888888888777654
No 36
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.83 E-value=4.9e-09 Score=66.76 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=63.2
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
+...|.+.+ +++.++++.+++.+...++..++.++.|++.||+|||+++..+.++..++.+..+++++++.+
T Consensus 43 ~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (434)
T PRK11663 43 NAAMPEMLA---DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAF 114 (434)
T ss_pred HHhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344566666 789999999999999999999999999999999999999999999999999988888877644
No 37
>KOG0255|consensus
Probab=98.83 E-value=7.4e-09 Score=67.22 Aligned_cols=64 Identities=20% Similarity=0.164 Sum_probs=57.2
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHG 84 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~ 84 (87)
.+..+.....+..+++.+|..+|++++|+++||+|||++++.+..+..++.+..++++|++.+.
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~ 175 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFL 175 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 3455666778899999999999999999999999999999999999999999999999987653
No 38
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.82 E-value=5.8e-09 Score=65.33 Aligned_cols=70 Identities=20% Similarity=0.152 Sum_probs=61.0
Q ss_pred ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
+..|.+.+ +++.++++.++..+.+.++..++.++.|+++||+|||+.+..+..+..++......+++...
T Consensus 24 ~~lp~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~ 93 (392)
T PRK10473 24 VGLPRIAA---DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSL 93 (392)
T ss_pred hhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 45666666 78999999999999999999999999999999999999999999998888888887776543
No 39
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.81 E-value=2.3e-09 Score=65.81 Aligned_cols=68 Identities=24% Similarity=0.142 Sum_probs=57.0
Q ss_pred ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
..+.+|.+.. +.+.++.+.+++.+...++..++.++.|+++||+|||+++..+..+..++.....++.
T Consensus 18 ~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 85 (365)
T TIGR00900 18 TQVALPLYVL---AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA 85 (365)
T ss_pred HHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555 6788889999999999999999999999999999999999998888877777776665
No 40
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.79 E-value=4.8e-09 Score=63.83 Aligned_cols=73 Identities=29% Similarity=0.355 Sum_probs=61.8
Q ss_pred eccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 7 WTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
...+..|.+.+ +.+.++++.++..+...++..++.++.|+++||+|||+.+..+.....++.+.....++++.
T Consensus 17 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (352)
T cd06174 17 LLSPALPLLAE---DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWL 89 (352)
T ss_pred hhHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHH
Confidence 34455566665 67889999999999999999999999999999999999999999999988888887766543
No 41
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.78 E-value=5.4e-09 Score=64.70 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=58.7
Q ss_pred eeeecccccccc-ccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHH-HHHHHHHHHHHHHHhcccc
Q psy15540 4 ILGWTSPAGDRL-IAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL-LAVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 4 ~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~a~~~~ 81 (87)
..+...+.+|.. ++ +++.++.+.+++.+.+.+...+..++.|.++||+|||+.++. +.....++....+++++++
T Consensus 12 ~~~~~~~~l~~~l~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (375)
T TIGR00899 12 AGALQFPTLSLFLSE---EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYF 88 (375)
T ss_pred HHHHHhhHHHHHHHc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHH
Confidence 445556666654 44 789999999999999999889999999999999999887665 4555556667777777765
Q ss_pred c
Q psy15540 82 R 82 (87)
Q Consensus 82 ~ 82 (87)
.
T Consensus 89 ~ 89 (375)
T TIGR00899 89 L 89 (375)
T ss_pred H
Confidence 4
No 42
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.78 E-value=4e-09 Score=66.14 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=54.7
Q ss_pred eecccccccc-ccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540 6 GWTSPAGDRL-IAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 6 g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 75 (87)
+...+.+|.. ++ +++.++++.++..+...++..++.++.|+++||+|||+++..+.++..++.+...
T Consensus 32 ~~~~~~l~~~i~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~ 99 (399)
T PRK05122 32 GLPLAVLPGYVHD---QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYL 99 (399)
T ss_pred HHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 3344555553 34 7889999999999999999999999999999999999999998887766555443
No 43
>TIGR00895 2A0115 benzoate transport.
Probab=98.77 E-value=6.9e-09 Score=64.31 Aligned_cols=70 Identities=26% Similarity=0.304 Sum_probs=59.9
Q ss_pred ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
...|.+.+ +++.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..++.....++++++.
T Consensus 38 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (398)
T TIGR00895 38 FAAPAISA---EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQ 107 (398)
T ss_pred hhHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 34555555 78889999999999999999999999999999999999999999888888888887776543
No 44
>PRK10504 putative transporter; Provisional
Probab=98.77 E-value=5.3e-09 Score=66.94 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=60.5
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
++..|.+.+ +++.++.+.++..+.+.++..++.++.|+++||+|||+++..+..+..++.+.+.++++.+.
T Consensus 30 ~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (471)
T PRK10504 30 NTALPSMAQ---SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNE 100 (471)
T ss_pred HHHHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 445666666 78999999999999999999999999999999999999999988888888887777776543
No 45
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.77 E-value=1e-08 Score=65.78 Aligned_cols=69 Identities=23% Similarity=0.231 Sum_probs=59.8
Q ss_pred ccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 12 GDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
.|.+.. +++.+.++.++..+...++..++.++.|+++||+|||++++.+.++..++.+.++++++++.+
T Consensus 42 ~~~i~~---~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l 110 (455)
T TIGR00892 42 FKELQQ---IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIEL 110 (455)
T ss_pred HHHHHH---HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHH
Confidence 445555 789999999999999999889999999999999999999999998888888888888776543
No 46
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.76 E-value=5.2e-09 Score=67.61 Aligned_cols=50 Identities=22% Similarity=0.066 Sum_probs=46.0
Q ss_pred HHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 33 GSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 33 ~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
.++..++..++.++.|+++||+|||+++..+.++..++.+.+++++++..
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~ 112 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYAT 112 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 46677889999999999999999999999999999999999999999764
No 47
>PRK12382 putative transporter; Provisional
Probab=98.73 E-value=1.8e-08 Score=63.15 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=51.6
Q ss_pred eccccccc-cccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH
Q psy15540 7 WTSPAGDR-LIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGW 71 (87)
Q Consensus 7 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 71 (87)
...|.+|. +++ +++.++++.+++.+.+.++..+++++.|+++||+|||+.+..+.+...++.
T Consensus 33 ~~~p~l~~~l~~---~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~ 95 (392)
T PRK12382 33 LPLPVIPLFVHH---DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG 95 (392)
T ss_pred HHhhhhhHHHHH---hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence 34455554 345 789999999999999999999999999999999999999998877665544
No 48
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.73 E-value=2.4e-08 Score=63.04 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=50.0
Q ss_pred cccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
.+..+.+++.+.+.++..++.++.|+++||+|||+++..+..+..++.++.....+
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 123 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF 123 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44789999999999999999999999999999999999999999888888865543
No 49
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.70 E-value=6.5e-08 Score=49.23 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=64.6
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
.|.+|.+++ +.+++.++.+++.+...+|..+|++....+.++.++|+.+..+.+...+....+++.++...+
T Consensus 12 TplLP~M~~---~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 12 TPLLPLMQA---DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred HhHhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 467788888 899999999999999999999999999999999888899999999999999999988876543
No 50
>KOG1330|consensus
Probab=98.69 E-value=4.6e-09 Score=67.44 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=60.4
Q ss_pred CCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540 20 YPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHG 84 (87)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~ 84 (87)
+.++++++..+++.+.+.+..++..|++|+++||++||+++.++..+..++.+.+++...++++.
T Consensus 61 ~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~ 125 (493)
T KOG1330|consen 61 TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVL 125 (493)
T ss_pred HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999987777653
No 51
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.68 E-value=1.9e-08 Score=63.07 Aligned_cols=75 Identities=23% Similarity=0.168 Sum_probs=58.5
Q ss_pred eeccccccccccCCCCCccccch-----hHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540 6 GWTSPAGDRLIAGEYPFPVTESD-----LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80 (87)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~ 80 (87)
+...+.+|.+.+ +++.+..+ .++..+...++..++.++.|+++||+|||+.+..+.....++.+....++++
T Consensus 31 ~~~~~~l~~~~~---~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 107 (408)
T PRK09874 31 SLVMPFLPLYVE---QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNI 107 (408)
T ss_pred HHhhhhHHHHHH---HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344556666666 66666544 4778888889999999999999999999999999988888888777777665
Q ss_pred ccc
Q psy15540 81 SRH 83 (87)
Q Consensus 81 ~~l 83 (87)
+.+
T Consensus 108 ~~~ 110 (408)
T PRK09874 108 WQF 110 (408)
T ss_pred HHH
Confidence 543
No 52
>PRK10054 putative transporter; Provisional
Probab=98.68 E-value=3.3e-08 Score=62.45 Aligned_cols=62 Identities=19% Similarity=0.145 Sum_probs=55.3
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
+++.++.+.++..+...++..+.+++.|+++||+|||+++..+.....++.+...++++++.
T Consensus 37 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (395)
T PRK10054 37 QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTL 98 (395)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 68999999999999999999999999999999999999999988888888877777777643
No 53
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.64 E-value=1.9e-08 Score=63.99 Aligned_cols=51 Identities=22% Similarity=0.174 Sum_probs=43.8
Q ss_pred HHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540 31 FIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 31 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~ 81 (87)
...+...++..++.++.|+++||+|||+++..+..+..++.+.+++++++.
T Consensus 67 ~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 117 (432)
T PRK10406 67 GVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYE 117 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCch
Confidence 334455667779999999999999999999999999999999999988764
No 54
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.60 E-value=8e-08 Score=61.55 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=55.7
Q ss_pred cccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 11 AGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
..|.+.+ + +.+..+.++..+...++..+++++.|+++||+|||+++..+.++..+..+..++++
T Consensus 51 ~~p~l~~---~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~ 114 (452)
T PRK11273 51 AMPYLVE---Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP 114 (452)
T ss_pred hhHHHHH---c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhh
Confidence 4455555 6 88999999999999999999999999999999999999999988888887777653
No 55
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.59 E-value=5.2e-08 Score=63.33 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=53.7
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
+++.++++..+..+.+........++.|+++|| +|||+++..+.++..++.+.++++.+
T Consensus 44 ~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~ 103 (489)
T PRK10207 44 QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLL 103 (489)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 688899999999999888888889999999999 99999999999999999988888765
No 56
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.59 E-value=5.2e-08 Score=61.50 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=53.5
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI 74 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 74 (87)
.+..+.+.+ +++.++++.++..+.+.++..++.++.|+++||+|||+.+..+..+..++.+.+
T Consensus 33 ~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~ 95 (402)
T TIGR00897 33 QGWLSPFLK---ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAF 95 (402)
T ss_pred HHhHHHHHH---HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 334455555 678999999999999999999999999999999999999999888888776554
No 57
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.58 E-value=1e-07 Score=60.15 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=51.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
+++.++.+.++..+.+.+...+..++.|+++||+|||+++..+..+..++.+.+.++.+
T Consensus 32 ~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~ 90 (393)
T PRK11195 32 ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH 90 (393)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 67778888999999999999999999999999999999999999888877766655444
No 58
>PRK15075 citrate-proton symporter; Provisional
Probab=98.55 E-value=1.2e-07 Score=60.48 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=52.3
Q ss_pred ccccccccCCCCCccccchhHHH-HHHh-----hHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 10 PAGDRLIAGEYPFPVTESDLSFI-GSSM-----ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
...|.+.+ +++.++.+.+.. .+.. .++..+++++.|+++||+|||+.++.+..+..++...+++++++..
T Consensus 36 ~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~ 111 (434)
T PRK15075 36 FYATAIAK---TFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYAT 111 (434)
T ss_pred HHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34455555 777777665433 2222 2333568899999999999999999999999999999999988653
No 59
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.55 E-value=8.9e-08 Score=47.98 Aligned_cols=46 Identities=20% Similarity=0.368 Sum_probs=42.1
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP 66 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 66 (87)
+.++++.+.+.+.++..+...++++++|.++||++|++........
T Consensus 29 ~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 29 QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 7899999999999999999999999999999999999987766554
No 60
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.54 E-value=1.1e-07 Score=60.51 Aligned_cols=61 Identities=10% Similarity=0.100 Sum_probs=51.2
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhch-hHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR-KNTMLLLAVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~a~~~~ 81 (87)
+++.+.++.+++.+...++..+++++.|.++||+|| |+++.++.....+......+.++++
T Consensus 32 ~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~ 93 (418)
T TIGR00889 32 TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPA 93 (418)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 689999999999999999999999999999999965 7777777777767666666666544
No 61
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.53 E-value=1.1e-07 Score=61.59 Aligned_cols=60 Identities=17% Similarity=0.081 Sum_probs=54.9
Q ss_pred CccccchhHHHHHHhhHhhhhhhhhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~a~~~~ 81 (87)
++.++.+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.+..++++++.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~ 103 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPD 103 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHh
Confidence 78999999999999999999999999999999 8999999999999999888888776543
No 62
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.52 E-value=2e-07 Score=60.36 Aligned_cols=63 Identities=8% Similarity=0.040 Sum_probs=56.2
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-----cccccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS-----QSVSRH 83 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a-----~~~~~l 83 (87)
+++++++|.+++.++..++..+..++.|++.||+|.|+++..+.++..+..+..+++ ++++.+
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~l 131 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIF 131 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHH
Confidence 689999999999999999999998999999999999999999999999888888876 555543
No 63
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.48 E-value=1.2e-08 Score=68.15 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=65.1
Q ss_pred eeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 5 LGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
.++.++.++.+++ ++++++.+.+++.+.+.++..++.++.+++.||.|||+.+.++.++..++.+++++.+
T Consensus 49 ~g~~~~~l~~iek---~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph 119 (633)
T TIGR00805 49 NGLVNSSLTTIER---RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH 119 (633)
T ss_pred HHHHHhhchhhhh---hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence 4677778888887 8999999999999999999999999999999999999999999999999999988764
No 64
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.48 E-value=2.9e-07 Score=58.28 Aligned_cols=63 Identities=8% Similarity=-0.053 Sum_probs=56.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
+.+.++.+.+...+...+...+..++.|+++||+|||+.+..+..+..++.+....+++++.+
T Consensus 40 ~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l 102 (400)
T PRK11646 40 QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLL 102 (400)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 678899999999999999888889999999999999999999999999999888887776543
No 65
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.45 E-value=5.9e-07 Score=58.33 Aligned_cols=57 Identities=21% Similarity=0.252 Sum_probs=50.3
Q ss_pred ccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 23 PVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
+.++.+.+++.+...++..+++++.++++||+|||+++..+.++..++.++++++++
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~ 108 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG 108 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC
Confidence 445567789999999999999999999999999999999999999988888887755
No 66
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.43 E-value=2.3e-07 Score=60.37 Aligned_cols=63 Identities=21% Similarity=0.136 Sum_probs=58.6
Q ss_pred CCccccch-hHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 21 PFPVTESD-LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 21 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
++++++++ .+.+.+.+..+..+..++.|+++||+|.|+++..+.+...+..++.+++.+...+
T Consensus 55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L 118 (511)
T TIGR00806 55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHM 118 (511)
T ss_pred HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999 9999999999999999999999999999999999999999999999988776544
No 67
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.41 E-value=1.7e-07 Score=59.56 Aligned_cols=75 Identities=24% Similarity=0.141 Sum_probs=68.1
Q ss_pred ceeeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 2 GTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
|+....+.+.+|.+++ .++++..+.+++...+.-+..+..+..+.+.+|+|+|+.++.+..+..++..++.-+.+
T Consensus 26 G~~~~l~diLip~l~~---~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~ 100 (422)
T COG0738 26 GFITCLNDILIPHLKE---VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS 100 (422)
T ss_pred HHHhhcchhhHHHHHH---HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5666778888999988 89999999999999999999999999999999999999999999999999998865543
No 68
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.40 E-value=8.7e-07 Score=56.86 Aligned_cols=57 Identities=21% Similarity=0.076 Sum_probs=51.2
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
+++++..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.+...++
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 126 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWA 126 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999988888877776543
No 69
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.39 E-value=2.6e-07 Score=58.54 Aligned_cols=48 Identities=25% Similarity=0.273 Sum_probs=42.8
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL 68 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 68 (87)
+++.++.+.+...+...++..+++++.|+++||+|||+++..+.....
T Consensus 40 ~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~ 87 (420)
T PRK09528 40 INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLL 87 (420)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999877554443
No 70
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.39 E-value=3.3e-07 Score=57.68 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=42.8
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL 68 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 68 (87)
+++.++.+.++..+...+...++.++.|+++||+|||+.+..+.....
T Consensus 32 ~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~ 79 (396)
T TIGR00882 32 VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLL 79 (396)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999887655443
No 71
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.38 E-value=3.2e-08 Score=62.94 Aligned_cols=58 Identities=28% Similarity=0.395 Sum_probs=52.2
Q ss_pred cchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc---ccccc
Q psy15540 26 ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ---SVSRH 83 (87)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~---~~~~l 83 (87)
+.+.++..+...+|..+|+++.|.++||+|||++++.+..+..++.++..+++ ++..+
T Consensus 45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 105 (451)
T PF00083_consen 45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWML 105 (451)
T ss_pred HHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34578899999999999999999999999999999999999999999999998 66543
No 72
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.36 E-value=3.8e-07 Score=60.69 Aligned_cols=61 Identities=20% Similarity=0.302 Sum_probs=53.9
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
+.+- .+...|+.+...++..+.+++.|.++|.+|||..++.+.++..++.++++-++|...
T Consensus 73 diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~ 133 (599)
T PF06609_consen 73 DIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNT 133 (599)
T ss_pred hcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHH
Confidence 5553 467788999999999999999999999999999999999999999999998887643
No 73
>KOG2504|consensus
Probab=98.36 E-value=6.3e-07 Score=58.77 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=59.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHG 84 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~ 84 (87)
+++.+.++.+|+.++......+..|+.+.+.||+|.|.+.+.+.++..++.++.+++.+.+++.
T Consensus 75 ~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~ 138 (509)
T KOG2504|consen 75 YFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLY 138 (509)
T ss_pred HhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7788888899999999999999999999999999999999999999999999999999987654
No 74
>KOG2615|consensus
Probab=98.33 E-value=9.8e-07 Score=56.12 Aligned_cols=57 Identities=26% Similarity=0.350 Sum_probs=51.0
Q ss_pred cchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 26 ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
..-.+.+.+.+.+...+.++.+|-++||+|||.++..++....+...+.+.+.|+..
T Consensus 67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~a 123 (451)
T KOG2615|consen 67 VFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAA 123 (451)
T ss_pred chhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688899999999999999999999999999999999999999988888888733
No 75
>PTZ00207 hypothetical protein; Provisional
Probab=98.31 E-value=3.2e-07 Score=61.02 Aligned_cols=62 Identities=18% Similarity=0.128 Sum_probs=50.7
Q ss_pred ccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 12 GDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
.+.+.+ +++++..+.+++.+.... .....++.|++.||+|||+++.++.++..++.++++++
T Consensus 50 s~~L~~---~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala 111 (591)
T PTZ00207 50 SGAMQA---RYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALT 111 (591)
T ss_pred HHHHHH---HhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 789999999988876433 34456678999999999999999999999999999887
No 76
>PRK09952 shikimate transporter; Provisional
Probab=98.31 E-value=1.6e-06 Score=55.57 Aligned_cols=48 Identities=27% Similarity=0.218 Sum_probs=42.4
Q ss_pred HhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 35 SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 35 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
+..++..++.++.|+++||+|||+++..+..+..++.+++++++++..
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 119 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFST 119 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 345667788999999999999999999999999999999999998763
No 77
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.30 E-value=9e-07 Score=56.53 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=49.9
Q ss_pred CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
.+.++++.++..+.+.++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 111 (438)
T TIGR00712 56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFV 111 (438)
T ss_pred cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcc
Confidence 48899999999999999999999999999999999999998888888777766543
No 78
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.27 E-value=9.7e-07 Score=57.69 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=49.1
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-GRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~ 76 (87)
+++.++.+.+.+.+.+.....++++++|+++||+ |||+++..+.++..++......
T Consensus 39 ~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~ 95 (493)
T PRK15462 39 QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA 95 (493)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999 9999999998888877665543
No 79
>KOG0569|consensus
Probab=98.26 E-value=2.5e-06 Score=55.64 Aligned_cols=50 Identities=34% Similarity=0.403 Sum_probs=43.6
Q ss_pred hHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 29 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
.+...+++.+|.++|+...++++||+|||..+..+.++...+...+.++.
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~ 111 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSK 111 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 57778889999999999999999999999999998888888777776553
No 80
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.25 E-value=3.9e-06 Score=51.96 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=44.8
Q ss_pred cccchhHHHHHHh-----hHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540 24 VTESDLSFIGSSM-----ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 24 ~~~~~~~~~~~~~-----~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~ 81 (87)
.++++.+...+.. .++..+++++.|+++||+|||+++..+..+..++...+++++++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~ 89 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYA 89 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChh
Confidence 4555555544432 233456889999999999999999999999999999988888764
No 81
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.24 E-value=1e-06 Score=56.25 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=61.2
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~ 81 (87)
+++.+.+.. +++++++|.+++.++..+...+..++.|.+.||+|.|+....+.++..+-.+..+++..+.
T Consensus 34 s~l~~~i~~---~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~ 103 (417)
T COG2223 34 SPLGVFIKS---DFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP 103 (417)
T ss_pred HHHHhhhcc---ccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC
Confidence 344455555 8999999999999999999999999999999999999999999999998888888877654
No 82
>KOG0252|consensus
Probab=98.23 E-value=2.6e-06 Score=55.33 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=48.0
Q ss_pred cccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
.++...+.......+|..+|+++.|++.||+|||+++-...++..++++.+++..
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~ 135 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSV 135 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCC
Confidence 4555678888899999999999999999999999999999999999988666544
No 83
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.23 E-value=6.8e-07 Score=57.22 Aligned_cols=72 Identities=19% Similarity=0.141 Sum_probs=63.8
Q ss_pred cccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy15540 11 AGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHGS 85 (87)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 85 (87)
..|.+.+ +.+++.+|.+.+.+.+.+...++-.+.|.++||.++|..+..++++..+..++++++++...+.+
T Consensus 51 a~p~l~e---~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~ 122 (448)
T COG2271 51 AMPALIE---DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAV 122 (448)
T ss_pred ccHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3455665 77799999999999999999999999999999999999999999999999999999887665544
No 84
>KOG2532|consensus
Probab=98.18 E-value=5e-06 Score=54.11 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=56.9
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~ 81 (87)
+++.++++.+++.+....|..+++...++++||+|-|+++..+.++..+.+++...+.+..
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~ 127 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG 127 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788999999999999999999999999999999999999999999999999998876543
No 85
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.17 E-value=2.4e-06 Score=52.93 Aligned_cols=72 Identities=22% Similarity=0.211 Sum_probs=51.5
Q ss_pred ceeeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh-----chhHHH-HHHHHHHHHHHHHHH
Q psy15540 2 GTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKNTM-LLLAVPTLVGWGLII 75 (87)
Q Consensus 2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~-~~~~~~~~~~~~~~~ 75 (87)
|+.++..++..|.+.+ +++++.++.++..+. .+...+ .+++|+++||+ |||+.+ +.+.+...+.....+
T Consensus 1 ~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~ 75 (356)
T TIGR00901 1 GLPLGLVGNTLPYWLR---SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS 75 (356)
T ss_pred CCCchhHHhHHHHHHH---HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888 889999999999755 333334 88999999998 898875 455555555555555
Q ss_pred Hhc
Q psy15540 76 WSQ 78 (87)
Q Consensus 76 ~a~ 78 (87)
+.+
T Consensus 76 ~~~ 78 (356)
T TIGR00901 76 FLV 78 (356)
T ss_pred cCC
Confidence 543
No 86
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.14 E-value=2.9e-06 Score=55.41 Aligned_cols=58 Identities=26% Similarity=0.326 Sum_probs=48.0
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
+++.++++..+..+.+.......+++.|+++|| +|||+++..+..+..++...+++++
T Consensus 51 ~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~ 109 (500)
T PRK09584 51 QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG 109 (500)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 688888888888777666656666789999999 5999999999999988888887764
No 87
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.13 E-value=4.9e-06 Score=52.34 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=48.6
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI 74 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 74 (87)
+++.++.+++.+.........+..++.|.++||+|||+..+.-+++..+.++..
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k 116 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK 116 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999988887643
No 88
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.12 E-value=4.2e-07 Score=57.52 Aligned_cols=61 Identities=20% Similarity=0.074 Sum_probs=48.7
Q ss_pred ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy15540 10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGL 73 (87)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 73 (87)
+..|.+.. +.+.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..++...
T Consensus 38 ~~~~~~~~---~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~ 98 (417)
T PRK10489 38 VAVPVQIQ---MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIG 98 (417)
T ss_pred HHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHH
Confidence 34455544 56678889999999999999999999999999999999888776665554443
No 89
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.07 E-value=2.4e-06 Score=55.68 Aligned_cols=69 Identities=19% Similarity=0.208 Sum_probs=52.4
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhh----hhchhHHHHHH-HHHHHHHHHHHHHhccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGRKNTMLLL-AVPTLVGWGLIIWSQSV 80 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~~~-~~~~~~~~~~~~~a~~~ 80 (87)
.+..+.+.. +++.+..+.+.+..+..+...+.+|+.|+++| |+|||+.++.. .....+...+.+++++.
T Consensus 24 ~~~l~~yl~---~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~ 97 (477)
T TIGR01301 24 LSLLTPYVQ---ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI 97 (477)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence 344444444 67888999999999999999999999999999 59999998875 44445555666665553
No 90
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.06 E-value=1.2e-05 Score=49.58 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=48.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
+.+.++++.+...+...++..++.+..+++.||+|||+.+..+.....++.......+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 291 (377)
T TIGR00890 234 SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP 291 (377)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc
Confidence 5667777888889999999999999999999999999998888877777766655544
No 91
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.03 E-value=4.4e-06 Score=52.80 Aligned_cols=72 Identities=17% Similarity=0.120 Sum_probs=54.8
Q ss_pred ceeeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh-----chhH-HHHHHHHHHHHHHHHHH
Q psy15540 2 GTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKN-TMLLLAVPTLVGWGLII 75 (87)
Q Consensus 2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~-~~~~~~~~~~~~~~~~~ 75 (87)
|+.+++..+..|...+ +.+.+.++.+++..+... .+..+++|+++||+ |||+ .+..+.....+......
T Consensus 12 ~~~~~~~~~~~~~~l~---~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~ 86 (402)
T PRK11902 12 GLPLALTSGTLQAWMT---VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA 86 (402)
T ss_pred hhhHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH
Confidence 4556677777787777 779999999999776665 57789999999999 7775 56676777766666666
Q ss_pred Hhc
Q psy15540 76 WSQ 78 (87)
Q Consensus 76 ~a~ 78 (87)
+.+
T Consensus 87 ~~~ 89 (402)
T PRK11902 87 FCP 89 (402)
T ss_pred hcC
Confidence 653
No 92
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.00 E-value=1.5e-05 Score=50.32 Aligned_cols=61 Identities=11% Similarity=0.294 Sum_probs=44.0
Q ss_pred CCccccchhHHHHHHh-hHhhhhhhhhhhhhhhhhchhHHHH-HHHHHHHHHHHHHHHhccccc
Q psy15540 21 PFPVTESDLSFIGSSM-ALGAVFGSPVVGNLVDTVGRKNTML-LLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~a~~~~~ 82 (87)
+++.++++.++..+.. ..+...+++..++ .||+|||+.++ .+.+...+.....+++++++.
T Consensus 45 ~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (393)
T PRK15011 45 EVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFV 107 (393)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7889999999997765 4566666766666 99999998754 445555566666677776654
No 93
>PRK03699 putative transporter; Provisional
Probab=97.98 E-value=1.7e-05 Score=50.06 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=48.6
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~ 80 (87)
+++.++.+.+.+.+...++..++.+..+++.||++||+.+........+...+....++.
T Consensus 235 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (394)
T PRK03699 235 KFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDP 294 (394)
T ss_pred HcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCc
Confidence 568888999999999999999999999999999999998887776665555555444443
No 94
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.97 E-value=5.8e-06 Score=51.97 Aligned_cols=51 Identities=10% Similarity=0.078 Sum_probs=43.6
Q ss_pred eeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHH
Q psy15540 6 GWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT 59 (87)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 59 (87)
+...|.+|.+.+ +++.+..+.++..+...+...++.++.++++||+|||..
T Consensus 21 ~~~~p~l~~~l~---~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~ 71 (382)
T TIGR00902 21 GIFLPFFPAWLK---GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIII 71 (382)
T ss_pred HHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 445566677776 789999999999999999999999999999999998543
No 95
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.97 E-value=4.8e-06 Score=44.51 Aligned_cols=48 Identities=27% Similarity=0.409 Sum_probs=38.6
Q ss_pred HHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540 34 SSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 34 ~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~ 81 (87)
+...++..++.++.+++.||+|||+.+..+.....++.+.....++++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNIT 52 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHH
Confidence 345677788899999999999999999988888887777776665543
No 96
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.96 E-value=6.1e-06 Score=52.73 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=53.7
Q ss_pred eeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhc-hhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540 6 GWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG-RKNTMLLLAVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-rr~~~~~~~~~~~~~~~~~~~a~~~~ 81 (87)
|...|..+...+ +.+.+.+|++.+.+...+...++++++|.++||.+ +|+.+.+..++..+........++++
T Consensus 19 G~~~p~~~~~L~---~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~ 92 (400)
T PF03825_consen 19 GAFLPYLPLYLE---SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFW 92 (400)
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 334445555555 67899999999999999999999999999999986 45666666666555555555555554
No 97
>KOG3764|consensus
Probab=97.92 E-value=2.5e-05 Score=50.17 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=57.3
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
+.+..+++.+++.....+...+..++.|.+.||+|+|..++++.......++++++..++..+
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l 162 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPML 162 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHH
Confidence 445567789999999999999999999999999999999999999999999999999988754
No 98
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.91 E-value=2.6e-05 Score=49.24 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=43.0
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
+++.++.+.+.+.+.......++.++.|+++||+|||+.+..+..............++
T Consensus 246 ~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 304 (393)
T PRK15011 246 ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHS 304 (393)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778888888877777777888999999999999999877665554443333333333
No 99
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.91 E-value=3.1e-05 Score=54.45 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=39.3
Q ss_pred chhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540 27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI 74 (87)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 74 (87)
...+++.+++.++..++.++.|+++||+|||++++.+.++..+..++.
T Consensus 47 ~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~ 94 (1146)
T PRK08633 47 ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLI 94 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 446888889999999999999999999999999988776555444433
No 100
>PRK09528 lacY galactoside permease; Reviewed
Probab=97.89 E-value=3.5e-05 Score=48.99 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=49.5
Q ss_pred ccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 23 PVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
+.+..+.+.+.++..++..++.++.+++.||+|||+.+..+..+..++..+..++++.+.
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~ 317 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLE 317 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 445566788888888888899999999999999999998888888887777777776654
No 101
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.87 E-value=3.6e-05 Score=48.47 Aligned_cols=59 Identities=19% Similarity=0.342 Sum_probs=46.4
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
+.+.++.+.+...+...++..++.+..+++.||+|||+.+..+.+...++.......++
T Consensus 249 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 307 (406)
T PRK11551 249 GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS 307 (406)
T ss_pred hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 46788888999999999999999999999999999999887766555555444444443
No 102
>KOG0253|consensus
Probab=97.86 E-value=1e-05 Score=51.81 Aligned_cols=63 Identities=24% Similarity=0.179 Sum_probs=58.2
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
.++.++-+.+.++.....+..+++..++..+|++|||+.+........+...+.+.++|+.++
T Consensus 107 ~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L 169 (528)
T KOG0253|consen 107 VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASL 169 (528)
T ss_pred hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehh
Confidence 678888899999999999999999999999999999999999999999999999999988654
No 103
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.85 E-value=4.1e-05 Score=46.63 Aligned_cols=59 Identities=22% Similarity=0.406 Sum_probs=51.6
Q ss_pred CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhH-HHHHHHHHHHHHHHHHHHhccc
Q psy15540 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKN-TMLLLAVPTLVGWGLIIWSQSV 80 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-~~~~~~~~~~~~~~~~~~a~~~ 80 (87)
.+.++.+.+...+...++..++.++.+++.||+|||+ .+..+..+..++.......++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 265 (352)
T cd06174 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265 (352)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccH
Confidence 4778889999999999999999999999999999999 8888888888888777766653
No 104
>PRK10133 L-fucose transporter; Provisional
Probab=97.83 E-value=7.4e-05 Score=48.14 Aligned_cols=58 Identities=7% Similarity=-0.080 Sum_probs=48.3
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
..+.++.+.+.......++..++.+..+++.||+|||+++..+..+..+......+.+
T Consensus 289 ~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~ 346 (438)
T PRK10133 289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG 346 (438)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5788999999999999999999999999999999999998887766655554444433
No 105
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.83 E-value=1.6e-05 Score=49.93 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=43.0
Q ss_pred eeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchh
Q psy15540 5 LGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK 57 (87)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 57 (87)
+|...|.+|.+.+ +.+.+.++.++..+...+...++.++.+++.||+|||
T Consensus 20 ~g~~~p~l~~~l~---~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~ 69 (382)
T PRK11128 20 YGVFLPFWSVWLK---GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQL 69 (382)
T ss_pred HHHHhhhHHHHHH---hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcch
Confidence 3455566666666 7899999999999999999999999999999999984
No 106
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.81 E-value=2.7e-05 Score=49.45 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=48.1
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh----hchhH-HHHHHHHHHHHHHHHHHHhcc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKN-TMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~~~~~~~~~a~~ 79 (87)
++++++.+.+.+.++..+...+..|+.|+++|| +|||+ .++.+.....++.+.....++
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~ 92 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPD 92 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCC
Confidence 689999999999999999999999999999998 67755 455676777766666665554
No 107
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.79 E-value=6.1e-05 Score=47.36 Aligned_cols=58 Identities=14% Similarity=-0.042 Sum_probs=47.8
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
+++.++.+.+...+...++..++.++.+++.||+|||+.+..+..+..++.......+
T Consensus 233 ~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 290 (392)
T PRK10473 233 QMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP 290 (392)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888889999999999999999999999888877776666555443
No 108
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.77 E-value=6e-05 Score=48.68 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=39.4
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP 66 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 66 (87)
+++.+..+.++..+...++..++.+..|+++||++||+.+......
T Consensus 288 ~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~ 333 (467)
T PRK09556 288 ELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIAL 333 (467)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 6788888999999989999999999999999999999876654433
No 109
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.77 E-value=3.6e-05 Score=50.02 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL 68 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 68 (87)
+.+.++.+.........++..++.+..++++||+|||+.+..+.+...
T Consensus 280 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~ 327 (490)
T PRK10642 280 NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALF 327 (490)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 456777777777777888899999999999999999998887765433
No 110
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.76 E-value=6.9e-05 Score=46.52 Aligned_cols=57 Identities=18% Similarity=0.245 Sum_probs=44.1
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHh
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-GRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~a 77 (87)
+.+.++++.+...+...++..++++..+++.||+ +||+.+..+.....++.....+.
T Consensus 226 ~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (355)
T TIGR00896 226 SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA 283 (355)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh
Confidence 4578888999999999999999999999999999 56666666666555555444443
No 111
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.74 E-value=6e-05 Score=47.45 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=55.0
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
+.+.++.+.+.+.+...++..+..+..+.+.||+|+|+.+..+.+...+.....+++++.+.
T Consensus 234 ~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 295 (382)
T TIGR00902 234 AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPL 295 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHH
Confidence 57889999999988888888999999999999999999999999999988888888777654
No 112
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.73 E-value=7.9e-05 Score=47.20 Aligned_cols=55 Identities=16% Similarity=0.037 Sum_probs=45.1
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 75 (87)
+.+.+..+.++......++..++.++.+++.||+|||+.+..+..+..++.....
T Consensus 313 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 367 (481)
T TIGR00879 313 NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG 367 (481)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 5677777788888888888999999999999999999998888776666555544
No 113
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.73 E-value=9.9e-05 Score=47.68 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=44.3
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG 72 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 72 (87)
+.+.++.+.+++.+...++..++.++.++++||+|||+.+..+..+..+..+
T Consensus 305 ~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 356 (496)
T PRK03893 305 DLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLII 356 (496)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 6788889999999999999999999999999999999988877665554443
No 114
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.72 E-value=4.4e-05 Score=47.64 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=41.4
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT 67 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 67 (87)
+.+.++.+.+++.+...++..++.+..+++.||+|||+.+..+....
T Consensus 268 ~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~ 314 (405)
T TIGR00891 268 DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAG 314 (405)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHH
Confidence 56788889999999999999999999999999999999888776654
No 115
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.71 E-value=9.7e-05 Score=50.70 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=42.2
Q ss_pred HHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540 30 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80 (87)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~ 80 (87)
.....+..++..++.++.++++||+|||+++..+.++..++.++.+++++.
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~ 648 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSE 648 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccH
Confidence 445566778889999999999999999999999988888887777766543
No 116
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.70 E-value=3e-05 Score=48.67 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=45.0
Q ss_pred ccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH
Q psy15540 12 GDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGW 71 (87)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 71 (87)
+|.+.+ +.+.++++.+...+...++..++.+..+++.||+|||+.+..+.....++.
T Consensus 223 lp~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~ 279 (381)
T PRK03633 223 MPLYLN---HQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGS 279 (381)
T ss_pred HHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 454444 457788888888888889999999999999999999998877666555544
No 117
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.70 E-value=0.00021 Score=44.21 Aligned_cols=56 Identities=9% Similarity=0.012 Sum_probs=47.3
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
.++.++++.+...+.+..+..+|.+..+++.||+|+|+.+..+..+..++.++...
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~ 227 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL 227 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999888777766665544443
No 118
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.69 E-value=8.9e-05 Score=46.02 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=42.7
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
+.+.++.+.+++..........+.+..+++.||+|||+.+..+.....+........++
T Consensus 229 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~ 287 (375)
T TIGR00899 229 ELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNS 287 (375)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888777766666777889999999999999888766655444433333333
No 119
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.69 E-value=2.6e-05 Score=49.97 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=50.0
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
+++.++.+.+.......+...+..+.+|+++||+|.+++.........+.........
T Consensus 248 ~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~ 305 (417)
T COG2223 248 QFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFL 305 (417)
T ss_pred hcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccc
Confidence 7889999999999998888899999999999999999999988888777766665543
No 120
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.67 E-value=9.7e-05 Score=46.48 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=45.7
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI 74 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 74 (87)
..+.++++.+++.+...++..++.++.+++.||+|+|+.+..+..+..++.+..
T Consensus 229 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~ 282 (382)
T PRK10091 229 ISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLML 282 (382)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHH
Confidence 468888999999999999999999999999999999998887776666555443
No 121
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.67 E-value=9.1e-05 Score=45.88 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=43.3
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 75 (87)
.++.++.+.+.+.+...+...++.++.++++||+|||+.+..+......+.....
T Consensus 255 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 309 (366)
T TIGR00886 255 QFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVV 309 (366)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 5677888888888888888899999999999999998877766655554444333
No 122
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.67 E-value=0.00013 Score=46.94 Aligned_cols=56 Identities=13% Similarity=-0.023 Sum_probs=43.9
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
+.+.+.....+......+...++.++.+++.||+|||+.++.+.++..++.+....
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~ 355 (479)
T PRK10077 300 TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT 355 (479)
T ss_pred HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHH
Confidence 45666666666666677788889999999999999999999888887776665543
No 123
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.66 E-value=0.00012 Score=46.27 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=45.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI 74 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 74 (87)
+.+.++++.+...+...++..++.+..+++.||++||+.+..+..+..++....
T Consensus 234 ~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~ 287 (393)
T PRK09705 234 EIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGF 287 (393)
T ss_pred HcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 457888889999999999999999999999999999998888776666555443
No 124
>PRK15075 citrate-proton symporter; Provisional
Probab=97.65 E-value=0.00011 Score=46.96 Aligned_cols=46 Identities=17% Similarity=0.367 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP 66 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 66 (87)
..+.++.+.++......++..++.+..|+++||+|||+.+..+...
T Consensus 268 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~ 313 (434)
T PRK15075 268 VLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVL 313 (434)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4677888888888888888899999999999999999987765443
No 125
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.64 E-value=0.00017 Score=44.81 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=45.6
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 75 (87)
+.+.++.+.+.+.+...++..++.++.+++.||+|||+.+..+..+..++..+..
T Consensus 236 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (385)
T TIGR00710 236 IMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLE 290 (385)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899999989999999999999999999999988877766665554444
No 126
>KOG0569|consensus
Probab=97.64 E-value=0.00019 Score=47.11 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=49.6
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
+-++++++..+.+........+..+.+..+.||.|||+.++.+..+..+..+++..+
T Consensus 299 ~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~ 355 (485)
T KOG0569|consen 299 TAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIA 355 (485)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 457888889999999999999999999999999999999999998888777766543
No 127
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.61 E-value=0.00018 Score=45.62 Aligned_cols=52 Identities=21% Similarity=0.163 Sum_probs=42.4
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG 72 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 72 (87)
+.+.++.+.+...+...++..++.++.+++.||+|||+.+..+.++..+...
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 311 (426)
T PRK12307 260 GEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIF 311 (426)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4567777888888888899999999999999999999988877766554443
No 128
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.60 E-value=0.00022 Score=44.24 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=39.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT 67 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 67 (87)
+.+.++++.+.......++..++.++.++++||+|||+.+.....+.
T Consensus 249 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 295 (394)
T TIGR00883 249 TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLA 295 (394)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 56778888888888888999999999999999999999877554443
No 129
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.60 E-value=0.00017 Score=46.38 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=47.1
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 75 (87)
..+.++.+.++......++..++.++.+++.||+|||+.+..+..+..++..+..
T Consensus 285 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~ 339 (485)
T TIGR00711 285 VLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRA 339 (485)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHh
Confidence 4677888899998888899999999999999999999998888877777666554
No 130
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.59 E-value=0.00015 Score=45.01 Aligned_cols=55 Identities=13% Similarity=0.308 Sum_probs=43.1
Q ss_pred CCccccchhHHHHHHhh-HhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMA-LGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 75 (87)
+.+.++++.+....... ++..++.++.+++.||+|||+.+..+.++..+......
T Consensus 238 ~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~ 293 (356)
T TIGR00901 238 DMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFV 293 (356)
T ss_pred HcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46778888887777655 67788999999999999999988887777666555444
No 131
>KOG3762|consensus
Probab=97.58 E-value=7.3e-05 Score=49.64 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=43.4
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLV 69 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 69 (87)
++|+++.+.+.+..+-.+..+++.|++|+++||+.+|+-++.+..+..+
T Consensus 40 QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v 88 (618)
T KOG3762|consen 40 QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSV 88 (618)
T ss_pred HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 8899999999999999999999999999999999999887776655543
No 132
>PRK03545 putative arabinose transporter; Provisional
Probab=97.55 E-value=0.00026 Score=44.62 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=36.3
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLL 63 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 63 (87)
+.+.++.+.+++.+...++..++.++.+++.||++||+.....
T Consensus 235 ~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~ 277 (390)
T PRK03545 235 VAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAI 277 (390)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 4677888899998888899999999999999999988754433
No 133
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.55 E-value=0.00028 Score=44.41 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=50.8
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
+.+.++.+.+.+.+...++..+..+..+++.||+|+|+.+..+.....+..+....+++.+.
T Consensus 234 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 295 (382)
T PRK11128 234 AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPW 295 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 56778888888888888888888899999999999999988888887777766666666543
No 134
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.54 E-value=0.00024 Score=44.31 Aligned_cols=48 Identities=10% Similarity=-0.003 Sum_probs=41.2
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL 68 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 68 (87)
+.+.++.+.+.......++..++.++.+++.||+|||+.+..+.....
T Consensus 224 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~ 271 (377)
T PRK11102 224 LNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQF 271 (377)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 457788889999999999999999999999999999998887765433
No 135
>PRK09952 shikimate transporter; Provisional
Probab=97.51 E-value=0.00037 Score=44.82 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=35.0
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLV 69 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 69 (87)
+.+.+++..........+...++.+..|+++||+|||+.+..+.++..+
T Consensus 280 ~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~ 328 (438)
T PRK09952 280 NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTL 328 (438)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 4566665554455555566677888999999999999988877655444
No 136
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.50 E-value=0.00032 Score=44.92 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=37.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT 67 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 67 (87)
+.+.+..+.+...+...+...++.++.|+++||+|||+.+....++.
T Consensus 273 ~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~ 319 (432)
T PRK10406 273 TAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLA 319 (432)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 46777778888888777777888889999999999999877665543
No 137
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.46 E-value=8.3e-05 Score=46.81 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=45.7
Q ss_pred ceeeeeccccccccccCCCCCccccchhHHHH--HHhhHhhhhhhhhh-hhhhhhhchhHHHHHHH
Q psy15540 2 GTILGWTSPAGDRLIAGEYPFPVTESDLSFIG--SSMALGAVFGSPVV-GNLVDTVGRKNTMLLLA 64 (87)
Q Consensus 2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-g~l~d~~grr~~~~~~~ 64 (87)
|+.++...|.+|...+ +.+.+.++.+.+. .+......+..|+. ++..||+|||+..++..
T Consensus 14 g~~~~~~~p~lp~~l~---~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~ 76 (390)
T TIGR02718 14 GIPIGLAMDALPTLLR---EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM 76 (390)
T ss_pred HhHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence 4556667778888888 7899999999974 55677777777777 55799999999865554
No 138
>TIGR00895 2A0115 benzoate transport.
Probab=97.45 E-value=0.00034 Score=43.47 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=36.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLL 63 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 63 (87)
+.+.++.+.+...+...++..++.++.+++.||+|||+.....
T Consensus 279 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (398)
T TIGR00895 279 ELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL 321 (398)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 5677888889999999999999999999999999999554433
No 139
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.00031 Score=45.04 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=48.6
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
..+++++..++....+.++..+|....|++.|| +.|+.+.....+..+......+..+
T Consensus 241 v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~ 298 (394)
T COG2814 241 VAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGA 298 (394)
T ss_pred ccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcc
Confidence 678899999999999999999999999999999 8888888877776666655555444
No 140
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.44 E-value=0.00033 Score=44.43 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=35.8
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML 61 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 61 (87)
+.+.++.+.+...+...++..++.+..|+++||+|||+.+.
T Consensus 251 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 291 (402)
T TIGR00897 251 ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR 291 (402)
T ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 56788888888888888999999999999999999988654
No 141
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.43 E-value=0.00032 Score=43.10 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=47.2
Q ss_pred CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
++.++.+.+.......++..++.+..+++.||++||+.+..+.....+......+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (365)
T TIGR00900 242 LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP 298 (365)
T ss_pred hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc
Confidence 677888899999999999999999999999999999988877666666655555544
No 142
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=97.42 E-value=0.00035 Score=42.32 Aligned_cols=61 Identities=28% Similarity=0.451 Sum_probs=52.4
Q ss_pred cccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 13 DRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
|.+++ .++.+.+|...+.+...+|..+| ++.|.+.|++|+|.++.++.+....+......+
T Consensus 26 ~~Lk~---~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~ 86 (250)
T PF06813_consen 26 PQLKS---RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLA 86 (250)
T ss_pred HHHHH---HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 78999999999999999999886 777999999999999999999988887776654
No 143
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.42 E-value=0.0005 Score=43.41 Aligned_cols=60 Identities=10% Similarity=0.048 Sum_probs=46.3
Q ss_pred ccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 23 PVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
+.+..+.+...+...+...++.+..+++.||+|||+.+..+..+..+.......+++.+.
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~ 309 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALE 309 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHH
Confidence 344456677777777888888899999999999999998888877777666666665543
No 144
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.38 E-value=0.00011 Score=48.09 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=43.5
Q ss_pred eeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh-----chhHH-HHHHHHHHHHHHHHHHHh
Q psy15540 6 GWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKNT-MLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~-~~~~~~~~~~~~~~~~~a 77 (87)
+...+..|...+ +.+.+.++.+.+... ... ....+++++++||+ |||+. +..+.+...++....++.
T Consensus 29 ~~~~~~l~~~l~---~~g~~~~~ig~~~~~-~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~ 101 (491)
T PRK11010 29 ALTSGTLQAWMT---VENIDLKTIGFFSLV-GQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL 101 (491)
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHHH-HHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 334444555555 567777788876332 222 25789999999999 99986 446666666666666554
No 145
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.36 E-value=0.00054 Score=44.85 Aligned_cols=49 Identities=10% Similarity=0.198 Sum_probs=39.6
Q ss_pred CCccccchhHHHHH-HhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGS-SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLV 69 (87)
Q Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 69 (87)
+.+.++++.++... ...++..++.++.|+++||+|||+.+..+..+..+
T Consensus 252 ~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l 301 (491)
T PRK11010 252 GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGV 301 (491)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 57889999999874 56688999999999999999998877765554443
No 146
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.36 E-value=0.0003 Score=46.22 Aligned_cols=74 Identities=18% Similarity=0.093 Sum_probs=55.4
Q ss_pred eeeccccccccccC-CCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 5 LGWTSPAGDRLIAG-EYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 5 ~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
||......-++... .+.++.++++..-+.+.+..-....+.++|+++|| +|+|+++..+.++..++-+..+..+
T Consensus 38 YGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~ 113 (498)
T COG3104 38 YGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS 113 (498)
T ss_pred hhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc
Confidence 34444444444442 11255888888888888887778889999999999 5999999999999999888877663
No 147
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.35 E-value=0.00064 Score=43.02 Aligned_cols=56 Identities=9% Similarity=0.078 Sum_probs=43.8
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
+++.++.+.++.......+..++.+..+++.||++||+.+..+.+...++......
T Consensus 245 ~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~ 300 (406)
T PRK15402 245 GEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAAL 300 (406)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888887777777788889999999999999999888877766555554443
No 148
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00044 Score=44.07 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=58.4
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
.|.++.++. +.+.+.+..+.++++..+......++..++++|+|.++.+..+.++..++..+-...
T Consensus 32 gPLL~~Ir~---~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~ 97 (395)
T COG2807 32 GPLLDEIRQ---DLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG 97 (395)
T ss_pred hhhHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 345556666 899999999999999999999999999999999999999999999999988877654
No 149
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.34 E-value=0.00045 Score=49.03 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=30.4
Q ss_pred chhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHH
Q psy15540 27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL 62 (87)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 62 (87)
...++..+.+.+...+..++.|+++||+|||+++..
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~ 87 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKI 87 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHH
Confidence 346777778889999999999999999999997643
No 150
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.33 E-value=0.00085 Score=43.02 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=42.4
Q ss_pred cchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 26 ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
..+.+...+...+...++.++.++++||+|||+++..+.+...++......
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~ 300 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAY 300 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 356688888888888888999999999999999999998888777655554
No 151
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.33 E-value=0.00066 Score=44.34 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=46.0
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 75 (87)
..+.++.+.+.......++..++.++.|++.||+|||+.+..+.++..++.....
T Consensus 289 v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~ 343 (495)
T PRK14995 289 VHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLA 343 (495)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 4678888999998888899999999999999999999988877777766655443
No 152
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.30 E-value=0.00015 Score=46.41 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=45.8
Q ss_pred chhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
+..+.+.....++..++.+++++++||+|||+++..+..+..++.++..+.+
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 311 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG 311 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence 5667777788889999999999999999999999999999998888877765
No 153
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.26 E-value=0.00062 Score=44.32 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=33.8
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchh
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK 57 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 57 (87)
+.+.++.+.+.+.++..++..++.++.|+++||++||
T Consensus 282 ~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 282 RFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 5688888899999999999999999999999999976
No 154
>PRK10504 putative transporter; Provisional
Probab=97.23 E-value=0.0011 Score=42.71 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=44.7
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
..+.++.+.++......++...+.++.+++.||+|||+.+..+.....+...+..+
T Consensus 291 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 346 (471)
T PRK10504 291 GLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFML 346 (471)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHh
Confidence 35777788888888788888888899999999999999988887777666555544
No 155
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.23 E-value=0.0013 Score=41.82 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=42.0
Q ss_pred ccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 25 TESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
++.+.+++.+...++..++.++.++++||+|||+.+..+..+..++.....+.
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 307 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA 307 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 34566777777888899999999999999999999988877776666555443
No 156
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.20 E-value=0.00062 Score=43.27 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=47.6
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~ 80 (87)
..+.++.+.+++.+...++..++.++.+++.||.++|+.+..+.....++.+...+.++.
T Consensus 253 ~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 312 (417)
T PRK10489 253 VWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMW 312 (417)
T ss_pred ccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchH
Confidence 367888889999999999999999999999999888877777776666666555555543
No 157
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.11 E-value=0.0017 Score=40.92 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=40.4
Q ss_pred hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540 28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80 (87)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~ 80 (87)
+.++..+...++..++.+..+++.||+|||+.+..+.....++.......++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSP 302 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccH
Confidence 34555666777888889999999999999998888777777666666655554
No 158
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.10 E-value=0.002 Score=42.28 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=30.4
Q ss_pred HhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy15540 35 SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG 72 (87)
Q Consensus 35 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 72 (87)
+..+...+..++.|+++||+|+|+++..+.+...+...
T Consensus 294 l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~ 331 (462)
T PRK15034 294 FGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSA 331 (462)
T ss_pred HHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34566777889999999999999999988876665543
No 159
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.09 E-value=0.0014 Score=41.20 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=37.8
Q ss_pred HHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540 30 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80 (87)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~ 80 (87)
+.+.+...++..++.+..+++.||+|||+.+..+.....++.+.....++.
T Consensus 261 g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
T PRK09874 261 GMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTP 311 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccH
Confidence 444555667777888889999999999999888877766666555554443
No 160
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.09 E-value=0.0011 Score=43.34 Aligned_cols=40 Identities=30% Similarity=0.164 Sum_probs=29.1
Q ss_pred hhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540 36 MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 36 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 75 (87)
..++..++.+.++++.||+|||+.++.+..+..+......
T Consensus 344 ~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~ 383 (502)
T TIGR00887 344 ALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLG 383 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 3445666788899999999999998877766555443333
No 161
>PRK09669 putative symporter YagG; Provisional
Probab=97.08 E-value=0.00085 Score=43.14 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=45.1
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh----hchhHH-HHHHHHHHHHHHHHHHHhc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKNT-MLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~a~ 78 (87)
++++++.+.+.+..+..+.-.+..|+.|+++|| +|||+. ++.+.+...+...+....+
T Consensus 39 ~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p 101 (444)
T PRK09669 39 VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTP 101 (444)
T ss_pred hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCC
Confidence 679999999999999999999999999999999 777544 4456566655554444444
No 162
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.08 E-value=0.0019 Score=42.99 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=41.5
Q ss_pred CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI 74 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 74 (87)
..-++...+++.....+-..+..++.|.++||++||++++.+-.+..+.....
T Consensus 40 lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L 92 (524)
T PF05977_consen 40 LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLL 92 (524)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 34456677888888888888889999999999999999998777665444333
No 163
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.06 E-value=0.00014 Score=48.35 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=0.0
Q ss_pred eeeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 3 TILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
...||....+.++++ .+++++++.+++.+.+-++..+..++..++.+|.+|.+.+-.+.++.+++.+++++
T Consensus 17 ~~~g~~~~~lttiEr---RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 17 MVSGYVNSSLTTIER---RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence 456778888888887 89999999999999999999999999999999998888888899999999888774
No 164
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.05 E-value=0.0017 Score=40.94 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=38.7
Q ss_pred CCccccchhHHHHHHhh-HhhhhhhhhhhhhhhhhchhHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMA-LGAVFGSPVVGNLVDTVGRKNTMLLLAVPT 67 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 67 (87)
|.+.++++.++...... .+..++.+..+++.||+|+|+.+..+....
T Consensus 237 ~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~ 284 (390)
T TIGR02718 237 DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLA 284 (390)
T ss_pred hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 56889999999888765 466778899999999999999888766554
No 165
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.93 E-value=0.0015 Score=42.36 Aligned_cols=55 Identities=20% Similarity=0.334 Sum_probs=48.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 75 (87)
++++++.+...+.....+.+.+|+++.|++.||+|.|+++..+.++..+..+...
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~ 336 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI 336 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999988888776555443
No 166
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.93 E-value=0.0027 Score=40.25 Aligned_cols=50 Identities=14% Similarity=0.306 Sum_probs=39.1
Q ss_pred CCccccchhHHHHHHh-hHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSM-ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVG 70 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 70 (87)
+.+.++++.+++.... ..+..++.++.+++.||+|||+.+..+.....+.
T Consensus 239 ~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~ 289 (402)
T PRK11902 239 GAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVS 289 (402)
T ss_pred hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5788888888887654 4567888999999999999998877666555444
No 167
>PRK12382 putative transporter; Provisional
Probab=96.93 E-value=0.002 Score=40.60 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=39.7
Q ss_pred hHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540 29 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80 (87)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~ 80 (87)
.+.......++..++.++.+++.||+|||+.+..+..+..++.......++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTA 302 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccH
Confidence 3444555667778889999999999999999888887777776666665544
No 168
>KOG2533|consensus
Probab=96.90 E-value=0.0021 Score=42.55 Aligned_cols=65 Identities=12% Similarity=-0.002 Sum_probs=55.4
Q ss_pred CCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540 20 YPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHG 84 (87)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~ 84 (87)
++.+....+.+.+.+++.++..++.++++.+.||+.-.+.+....+...+..++++..+|++.+.
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~i 138 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLI 138 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 36778888999999999999999999999999999988888888888888777777777766543
No 169
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.87 E-value=0.0012 Score=43.13 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhc-----hhHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG-----RKNTMLLLAVPT 67 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~~~~ 67 (87)
++++++++.+.+.++..+...+-.+ +|+++||++ ||+.+..+.++.
T Consensus 55 ~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~ 105 (468)
T TIGR00788 55 DLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLG 105 (468)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence 6899999999999999998888655 999999997 777767766555
No 170
>KOG0254|consensus
Probab=96.85 E-value=0.0037 Score=41.13 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=38.4
Q ss_pred HHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 30 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
.....+..+...++..+...+.||+|||+.++.+.....++.++.+..
T Consensus 332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~ 379 (513)
T KOG0254|consen 332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVV 379 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHH
Confidence 444455666677777777999999999999999999998888877754
No 171
>PRK10429 melibiose:sodium symporter; Provisional
Probab=96.84 E-value=0.0041 Score=40.51 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=36.8
Q ss_pred ccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy15540 25 TESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGL 73 (87)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 73 (87)
+++..+.+.+...++..++.++.++++||+|||+.+..+..+..++.+.
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~ 312 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGV 312 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 3445566666666788888999999999999999988777665544443
No 172
>PRK09848 glucuronide transporter; Provisional
Probab=96.83 E-value=0.0044 Score=39.92 Aligned_cols=57 Identities=26% Similarity=0.384 Sum_probs=39.9
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
.++.++....+......++..++.++.+++.||+|+|+.+..+..+..++.+...+.
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~ 314 (448)
T PRK09848 258 VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV 314 (448)
T ss_pred ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 345444433343333456677889999999999999999998888777766655543
No 173
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=96.80 E-value=0.004 Score=40.98 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=44.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchh--HHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK--NTMLLLAVPTLVGWGL 73 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~ 73 (87)
+++.+..+...+.....+.+.+|++.++++.||+|.| ++++.+..+..+..+.
T Consensus 311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~ 365 (477)
T PF11700_consen 311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLY 365 (477)
T ss_pred hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 6788999988888889999999999999999999999 7877777666444433
No 174
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=96.80 E-value=0.0019 Score=41.84 Aligned_cols=43 Identities=26% Similarity=0.378 Sum_probs=35.0
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLL 63 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 63 (87)
+.|++.++.+.+.+...+...+.+|+.|.+.||.|.||-++..
T Consensus 37 ~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~ 79 (412)
T PF01306_consen 37 VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWF 79 (412)
T ss_dssp HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHH
Confidence 3689999999999999999999999999999999977765543
No 175
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=96.78 E-value=0.0034 Score=40.16 Aligned_cols=37 Identities=8% Similarity=0.136 Sum_probs=31.9
Q ss_pred ccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHH
Q psy15540 23 PVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT 59 (87)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 59 (87)
+.++.+.+.......++..++.+..++++||++||+.
T Consensus 275 ~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 275 GSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH 311 (412)
T ss_pred CCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence 4566778888888999999999999999999997764
No 176
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.75 E-value=0.008 Score=38.59 Aligned_cols=54 Identities=6% Similarity=-0.076 Sum_probs=41.0
Q ss_pred cchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 26 ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
+...+...+....+..+|.+..+++.||.++|+.+.+......+..++....++
T Consensus 268 ~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~ 321 (410)
T TIGR00885 268 AGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGG 321 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333344555566778899999999999999999988888777777766666554
No 177
>PRK10429 melibiose:sodium symporter; Provisional
Probab=96.74 E-value=0.0027 Score=41.33 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=42.8
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhh----hhchhH-HHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGRKN-TMLLLAVPTLVGWGLII 75 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~-~~~~~~~~~~~~~~~~~ 75 (87)
..++++...+.+..+..+--.+..|+.|.++| |+|||+ -++.+.....++..+..
T Consensus 36 v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf 95 (473)
T PRK10429 36 VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF 95 (473)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH
Confidence 56899999999999999999999999999999 669954 44456666555544443
No 178
>TIGR00893 2A0114 d-galactonate transporter.
Probab=96.73 E-value=0.0021 Score=39.69 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=33.9
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKN 58 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 58 (87)
+.+.++.+.++..+...++..++.++.+++.||++||+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 245 ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45777888899999999999999999999999999995
No 179
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=96.71 E-value=0.0018 Score=45.89 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=47.9
Q ss_pred CCccccc-hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 21 PFPVTES-DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 21 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
.++.+.. +.+++.+...++..++.++.+++.||+++|+.+.++.++..++.+...+..+
T Consensus 262 ~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1146)
T PRK08633 262 VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPS 321 (1146)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhh
Confidence 5677888 8899999999999999999999999999998887777766666655555444
No 180
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=96.71 E-value=0.0044 Score=39.42 Aligned_cols=41 Identities=7% Similarity=0.048 Sum_probs=33.7
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML 61 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 61 (87)
+.+.++++.+.......++..++.++.+++.||.+||....
T Consensus 246 ~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~ 286 (394)
T PRK10213 246 LAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAG 286 (394)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 56888888999888899999999999999999965554333
No 181
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=96.67 E-value=0.0036 Score=36.81 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=40.6
Q ss_pred chhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
...++..+...++...+.++.|.+.||+|||+.+..+......+.+...+..+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN 91 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc
Confidence 46788888888888888899999999999998777777654455455555443
No 182
>PRK11043 putative transporter; Provisional
Probab=96.65 E-value=0.0063 Score=38.46 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=36.1
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP 66 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 66 (87)
+.+.++.+.++......++..++....+++.||+++|+.+......
T Consensus 232 ~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~ 277 (401)
T PRK11043 232 QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVL 277 (401)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 4677888888877777778888899999999999999866544433
No 183
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.61 E-value=0.0025 Score=42.39 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=54.7
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
+++.++...+++.+...+|..+|.+..+.+.+|.++++.+..+.+...+..+..+++++.+.
T Consensus 248 ~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~ 309 (524)
T PF05977_consen 248 VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWL 309 (524)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHH
Confidence 57888999999999999999999999999999999999888888888888888888776543
No 184
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.0075 Score=39.71 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=48.3
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
..+.++............+..++.++...+++|+|||+++..+.++..++.....+.+
T Consensus 266 ~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~ 323 (467)
T COG2211 266 VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP 323 (467)
T ss_pred EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455566666777777788888899999999999999999999999999888888776
No 185
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=96.60 E-value=0.0038 Score=39.68 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLA 64 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 64 (87)
.++.++.+.+...+...++..++.+..+++.||.++|+.+..+.
T Consensus 235 ~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~ 278 (393)
T PRK11195 235 ALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI 278 (393)
T ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 56888899999999999999999999999999999988777664
No 186
>KOG0253|consensus
Probab=96.59 E-value=0.0047 Score=40.16 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=36.0
Q ss_pred hhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 36 MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 36 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
..+.-..|.++.+++.||+|||++|..+.+++.+..+....+.
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~ 432 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK 432 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc
Confidence 3456678899999999999999999999999988877665544
No 187
>PRK09848 glucuronide transporter; Provisional
Probab=96.55 E-value=0.0037 Score=40.24 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=39.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh----chhHHH-HHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV----GRKNTM-LLLAVPTLV 69 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----grr~~~-~~~~~~~~~ 69 (87)
..++++.+.+.+.+...+...+..++.|.++||. |||+.. ..+.+...+
T Consensus 38 ~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~ 91 (448)
T PRK09848 38 VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMI 91 (448)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHH
Confidence 5789999999999999999999999999999996 767655 444444433
No 188
>TIGR00898 2A0119 cation transport protein.
Probab=96.47 E-value=0.011 Score=38.55 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=33.9
Q ss_pred hhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 36 MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 36 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
..+....+.+..+++.||+|||+.+..+.++..++.+...+.++
T Consensus 364 ~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~ 407 (505)
T TIGR00898 364 SGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV 407 (505)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34555667888899999999999999888887777666665543
No 189
>KOG2504|consensus
Probab=96.46 E-value=0.0057 Score=40.61 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=51.8
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhc--hhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG--RKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
+.+.++.+.+.+.++..+...++.+..|+++|+.. ++....++.+...+.....+++.++..+
T Consensus 327 ~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l 391 (509)
T KOG2504|consen 327 SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGL 391 (509)
T ss_pred hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 67889999999999999999999999999999998 4455556667777777777787777443
No 190
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=96.40 E-value=0.0047 Score=40.05 Aligned_cols=62 Identities=13% Similarity=-0.007 Sum_probs=49.6
Q ss_pred ccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540 23 PVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHG 84 (87)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~ 84 (87)
+.++...+.+.+...+.-...-.+.+++.+|+|.|+.++++.....+-...++++++++.+.
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~ 316 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVIS 316 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 34445678888888888888888889999999999999999999999999999999877543
No 191
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=96.36 E-value=0.0063 Score=37.29 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=43.2
Q ss_pred CCccc-cchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVT-ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 21 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 75 (87)
+++.+ ..+.+...+...+...++.++.+++.||+++|+..........+......
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (352)
T PF07690_consen 236 VLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLL 291 (352)
T ss_dssp HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 56777 67888888989999999999999999999988777776666655554443
No 192
>PRK11462 putative transporter; Provisional
Probab=96.20 E-value=0.022 Score=37.16 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=30.1
Q ss_pred hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHH
Q psy15540 28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT 67 (87)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 67 (87)
..+.+.....++..++.+++++++||++||+.+..+....
T Consensus 264 ~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~ 303 (460)
T PRK11462 264 VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALL 303 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 3455566677788888999999999999998876544433
No 193
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=96.18 E-value=0.012 Score=37.92 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=31.6
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchh
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK 57 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 57 (87)
..+.++.+.++......++..++.+..+++.||+++|
T Consensus 281 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~ 317 (438)
T TIGR00712 281 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG 317 (438)
T ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4577888888888888889999999999999999644
No 194
>PRK09669 putative symporter YagG; Provisional
Probab=96.14 E-value=0.025 Score=36.47 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=31.5
Q ss_pred hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHH
Q psy15540 28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLV 69 (87)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 69 (87)
..+.+.....+...++.+++++++||+|||+.+..+.....+
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~ 306 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVI 306 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 334455555677778889999999999999998877665544
No 195
>PRK11663 regulatory protein UhpC; Provisional
Probab=96.05 E-value=0.028 Score=36.22 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=31.0
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV 54 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 54 (87)
+.+.+..+.+...+...++..++.+..|+++||+
T Consensus 273 ~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~ 306 (434)
T PRK11663 273 TLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL 306 (434)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 5688888889999999999999999999999999
No 196
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=95.98 E-value=0.022 Score=36.81 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=31.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh--chhH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV--GRKN 58 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~ 58 (87)
+.+.+.++.++......++..++.++.|+++||+ +||.
T Consensus 283 ~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~ 322 (452)
T PRK11273 283 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 322 (452)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 4577778888888888888889999999999999 5554
No 197
>KOG4686|consensus
Probab=95.73 E-value=0.0094 Score=37.67 Aligned_cols=47 Identities=21% Similarity=0.088 Sum_probs=39.1
Q ss_pred CCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHH
Q psy15540 20 YPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP 66 (87)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 66 (87)
+.+++++.+.+.+.+..........++.|.++||+||+...+.+..+
T Consensus 293 ~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~ 339 (459)
T KOG4686|consen 293 KRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACI 339 (459)
T ss_pred HhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHH
Confidence 37899999999998888888888899999999999999776654433
No 198
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=95.69 E-value=0.036 Score=36.30 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=41.9
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh--chhHHHHHHH-HHHHHHHHHHHHhc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV--GRKNTMLLLA-VPTLVGWGLIIWSQ 78 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~-~~~~~~~~~~~~a~ 78 (87)
..+.+.....+..+++-+++..|++++|+++||. |||...-+.+ +...++....-.++
T Consensus 282 ~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~ 342 (448)
T COG2271 282 VKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAP 342 (448)
T ss_pred hcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCC
Confidence 5688899999999999999999999999999997 5665444333 33333333333444
No 199
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=95.63 E-value=0.029 Score=38.49 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=53.3
Q ss_pred eeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 5 LGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
||.......++.. .++.+++....+...+.....+.+.+.|+++|+ +||++++..+.++..++..+.+++
T Consensus 4 YGm~aiLvlYl~~---~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~ 74 (654)
T TIGR00926 4 YGMRTILVLYFLN---FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG 74 (654)
T ss_pred eecHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555555 678888888888888887788889999999986 688899998888888887776654
No 200
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=95.62 E-value=0.022 Score=35.18 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG 55 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 55 (87)
+.+.++.+.+...+...++..++.++.+++.||..
T Consensus 246 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 280 (379)
T TIGR00881 246 EKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF 280 (379)
T ss_pred HhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence 56778888899999999999999999999999863
No 201
>PF13347 MFS_2: MFS/sugar transport protein
Probab=95.57 E-value=0.0046 Score=39.63 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=45.9
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhh----hhchhHHHH-HHHHHHHHHHHHHHHh
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGRKNTML-LLAVPTLVGWGLIIWS 77 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~-~~~~~~~~~~~~~~~a 77 (87)
..++++...+.+.....+-..+..|+.|.++| |+|||+..+ .+.....++..+....
T Consensus 31 ~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~ 92 (428)
T PF13347_consen 31 VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSP 92 (428)
T ss_pred HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcc
Confidence 56899999999999988889999999999999 899887766 4666666666555544
No 202
>PRK10054 putative transporter; Provisional
Probab=95.53 E-value=0.026 Score=35.95 Aligned_cols=55 Identities=15% Similarity=0.030 Sum_probs=38.9
Q ss_pred CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
.+.++...+.......+......+..+.+.||.++|+.+..+..+..++.....+
T Consensus 239 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 293 (395)
T PRK10054 239 SDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIF 293 (395)
T ss_pred cchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665666778889999999999888887777666655554
No 203
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=95.40 E-value=0.043 Score=35.68 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=40.0
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh--hchhHHHHHH--HHHHHHHHHHHHHhcccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT--VGRKNTMLLL--AVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~--~grr~~~~~~--~~~~~~~~~~~~~a~~~~ 81 (87)
+.+.++.+.+...+...++..++.++.+++.|| +++|+..... ........++....++++
T Consensus 270 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 334 (455)
T TIGR00892 270 DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYT 334 (455)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 467888899999999999999999999999997 3344333332 222233333444445443
No 204
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=94.92 E-value=0.1 Score=34.21 Aligned_cols=55 Identities=11% Similarity=-0.054 Sum_probs=48.3
Q ss_pred CCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540 20 YPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI 74 (87)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 74 (87)
+..+.++.+.+.......++..++....+.+.+|++.|+.+..+.++..++....
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~ 335 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFD 335 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCc
Confidence 3678999999999999999999999999999999999999999888887766443
No 205
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=94.61 E-value=0.047 Score=35.35 Aligned_cols=37 Identities=22% Similarity=0.138 Sum_probs=33.0
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchh
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK 57 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 57 (87)
..+.+..+.++..++..++..++.++.|+++||.++|
T Consensus 291 ~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~ 327 (465)
T TIGR00894 291 VLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSS 327 (465)
T ss_pred HhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5678888999999999999999999999999998765
No 206
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=94.58 E-value=0.073 Score=36.36 Aligned_cols=51 Identities=12% Similarity=0.257 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHhhH-hhhhhhhhhhhhhhhhc--hhHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMAL-GAVFGSPVVGNLVDTVG--RKNTMLLLAVPTLVGW 71 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~ 71 (87)
+++.++.+.+++.....+ +..++.++.|+++||++ .|+.+..+.+...++.
T Consensus 360 ~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 360 QYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred HcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 678899999998887665 66889999999999998 4455555555555443
No 207
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=94.47 E-value=0.056 Score=35.22 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=51.0
Q ss_pred CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~ 80 (87)
.+.++.+.+...+.+..+.++|.+...++.+|+...+.+....+...+..+...++++.
T Consensus 267 ~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~ 325 (422)
T COG0738 267 LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGV 325 (422)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 67888999999999999999999999999999999999988887777767667666663
No 208
>KOG2563|consensus
Probab=94.33 E-value=0.11 Score=34.34 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=50.1
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
.++ +.+...|+..++.+....-.+...|+.||+|-|....++..+..++..+...+..
T Consensus 74 ~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~ 131 (480)
T KOG2563|consen 74 FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL 131 (480)
T ss_pred Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC
Confidence 345 6777889999999888888999999999999999999999999999888776644
No 209
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=94.33 E-value=0.12 Score=33.36 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=46.2
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhh-hhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVD-TVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
|-+.++.+.+++.+...+.....++....+++ +-++|+..........++...+.+++.
T Consensus 237 ~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~ 296 (395)
T COG2807 237 DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG 296 (395)
T ss_pred HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999999999999999988 455666666666666666666655553
No 210
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=94.30 E-value=0.26 Score=27.91 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=32.9
Q ss_pred HHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540 32 IGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI 74 (87)
Q Consensus 32 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 74 (87)
-.++......+.+++.+.+.++.|.|+.++++.+...+.....
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~ 84 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF 84 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344555667778888999999999999999998887655443
No 211
>KOG3626|consensus
Probab=94.28 E-value=0.005 Score=42.51 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=63.2
Q ss_pred eeeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 3 TILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
+..+|.++.+..+++ .+++++++.+++.+.+-++..+...+..+...|..|.+.+-.+.++.+++.+++++-
T Consensus 111 l~~~y~~s~IttiEr---RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alP 182 (735)
T KOG3626|consen 111 LYVGYFNSVITTIER---RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALP 182 (735)
T ss_pred hhhhhhhhhhhhhhh---hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhCh
Confidence 344677777777777 899999999999999999999999999999999999999889999999999888743
No 212
>KOG2816|consensus
Probab=94.15 E-value=0.2 Score=33.15 Aligned_cols=42 Identities=29% Similarity=0.428 Sum_probs=34.0
Q ss_pred hHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 37 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 37 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
.+...+.++..|.++||+|||..+........+......+..
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~ 113 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG 113 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH
Confidence 566777899999999999999999988888777666665544
No 213
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=94.02 E-value=0.19 Score=32.16 Aligned_cols=58 Identities=5% Similarity=-0.124 Sum_probs=35.1
Q ss_pred cccchhHHHHHHhhHhhhhhhhhhhhhh-hhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540 24 VTESDLSFIGSSMALGAVFGSPVVGNLV-DTVGRKNTMLLLAVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~grr~~~~~~~~~~~~~~~~~~~a~~~~ 81 (87)
.++.+.+++.+...++........+... ||++.|+.+..+..+..++......++++.
T Consensus 240 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (400)
T PRK11646 240 GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQ 298 (400)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3566777777766655544444445544 556666666677766666666666665543
No 214
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=93.70 E-value=0.1 Score=37.53 Aligned_cols=52 Identities=12% Similarity=-0.055 Sum_probs=40.9
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG 72 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 72 (87)
.++.++.+.+++.+...++..++.+..+++.|+.++++.+..+.+...+..+
T Consensus 255 ~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 306 (1140)
T PRK06814 255 TLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGL 306 (1140)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHH
Confidence 4688889999999999999999999999999888777655555544444443
No 215
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=93.61 E-value=0.0046 Score=39.63 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=29.0
Q ss_pred hhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540 36 MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI 74 (87)
Q Consensus 36 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 74 (87)
..+...++.+...++.||+|||+.++.+.....+.....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~ 333 (451)
T PF00083_consen 295 LGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLIL 333 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 334555667777799999999999888887766655544
No 216
>KOG2325|consensus
Probab=93.34 E-value=0.21 Score=33.33 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=46.7
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhch-hHHHHHHHHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR-KNTMLLLAVPTLVGWGLI 74 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~ 74 (87)
|.+-+.+-.++..++..++..+.++..++=.+|.++ |+-++.++++..++.++-
T Consensus 65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY 119 (488)
T KOG2325|consen 65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLY 119 (488)
T ss_pred CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHH
Confidence 356667778999999999999999999999999995 667788999988888877
No 217
>KOG4332|consensus
Probab=92.88 E-value=0.038 Score=34.82 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=35.9
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~ 80 (87)
.++..+-+++.+.....-..+.-..+.|.++||-|||+..+.-++...+.++ .-.++.|
T Consensus 66 tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqY 124 (454)
T KOG4332|consen 66 TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQY 124 (454)
T ss_pred hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCce
Confidence 4555666666555544444444455668899999999987666665555443 3334444
No 218
>KOG2533|consensus
Probab=92.50 E-value=0.27 Score=32.90 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=40.0
Q ss_pred CccccchhHHHHHHhhHhhhhhhhhhhhhhhh----hchhHHHHHHHHHHHHH
Q psy15540 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKNTMLLLAVPTLVG 70 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~~~~~~~~~~ 70 (87)
.+.++.+...+.+.+.++..++.+++|+++|| ..+|........+....
T Consensus 304 ~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~ 356 (495)
T KOG2533|consen 304 GGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAII 356 (495)
T ss_pred CCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999 77777766655555443
No 219
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=92.34 E-value=0.37 Score=32.03 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=35.9
Q ss_pred hHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHH-HHHHHHHHHh
Q psy15540 29 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT-LVGWGLIIWS 77 (87)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~-~~~~~~~~~a 77 (87)
.+...++..+...+..|+.|.++|+-++||-++....+. .+......+.
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v 121 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV 121 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh
Confidence 456677788888888999999999999998877655444 4455555543
No 220
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=92.19 E-value=0.18 Score=32.89 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=41.1
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh-----chhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
++++++.+...+.+...+-..+ -++.|.++|.+ .||+-++++.++...+....+..+
T Consensus 19 ~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~ 80 (433)
T PF03092_consen 19 DLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP 80 (433)
T ss_pred HcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 7899999999988887777555 66779999987 456656667766655555444433
No 221
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=92.00 E-value=0.77 Score=29.03 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=30.2
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKN 58 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 58 (87)
.++.++.+.+++.....++..++.++.+++.||++|+.
T Consensus 237 ~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 274 (394)
T PRK11652 237 VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM 274 (394)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888888888888888888899999887443
No 222
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=90.88 E-value=0.28 Score=25.70 Aligned_cols=46 Identities=28% Similarity=0.564 Sum_probs=33.9
Q ss_pred chhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy15540 27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG 72 (87)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 72 (87)
...+.......++..+++...+.+.|..|.|..+........+..+
T Consensus 87 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (141)
T TIGR00880 87 VALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFI 132 (141)
T ss_pred HHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 3456666677788888999999999999988877766655554443
No 223
>PRK11462 putative transporter; Provisional
Probab=90.45 E-value=0.76 Score=30.17 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=43.7
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh----hchhHHHH-HHHHHHHHHHHHHHHhc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKNTML-LLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~-~~~~~~~~~~~~~~~a~ 78 (87)
..++++...+.+..+.-+--.+.-|+.|.++|| +|||+..+ .+.+...+...+....+
T Consensus 39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p 101 (460)
T PRK11462 39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP 101 (460)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC
Confidence 568888888988888888888889999999996 68876666 45566666655544444
No 224
>KOG0252|consensus
Probab=89.94 E-value=0.38 Score=32.33 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=34.4
Q ss_pred HhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 38 LGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 38 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
.+...|.++...+.|+.|||+..+-+.....+..+..+...|
T Consensus 359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~ 400 (538)
T KOG0252|consen 359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN 400 (538)
T ss_pred HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc
Confidence 344458889999999999999999999998888777766554
No 225
>KOG0637|consensus
Probab=89.42 E-value=0.12 Score=34.30 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=38.7
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhh----hhchhHHHHHHHHH-HHHHHHHHHHhcccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGRKNTMLLLAVP-TLVGWGLIIWSQSVS 81 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~~~~~~-~~~~~~~~~~a~~~~ 81 (87)
+.+++....+.+-....+...+.+|+.|..+| |+|||+-++....+ ..++.++...+++..
T Consensus 61 ~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig 126 (498)
T KOG0637|consen 61 SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIG 126 (498)
T ss_pred HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhh
Confidence 34555555555545555556666888888887 58899888765544 455666666666543
No 226
>KOG2532|consensus
Probab=89.33 E-value=0.72 Score=30.67 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=33.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhch
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR 56 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 56 (87)
.++.+..+.+++.++..+...+....+|.++||.-+
T Consensus 288 VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~ 323 (466)
T KOG2532|consen 288 VLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF 323 (466)
T ss_pred HhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999999999866
No 227
>KOG4686|consensus
Probab=89.28 E-value=0.17 Score=32.27 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=45.2
Q ss_pred eeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhh-hchhHHHHHHHHHHHHHHHHHH
Q psy15540 5 LGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~ 75 (87)
++|++|..-..+- ..+.+++..+..++.+.+..-+.+-|++.|++.|| +|-|..-++-+....++.++++
T Consensus 58 fcyd~p~alq~~f-k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa 128 (459)
T KOG4686|consen 58 FCYDAPGALQIDF-KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFA 128 (459)
T ss_pred eecCCchhhhhhh-hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4555554322111 22567777888999999999999999999999986 4555444444444445554444
No 228
>KOG3764|consensus
Probab=88.88 E-value=0.21 Score=32.92 Aligned_cols=63 Identities=17% Similarity=0.095 Sum_probs=41.6
Q ss_pred CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhc--hhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG--RKNTMLLLAVPTLVGWGLIIWSQSVSRHG 84 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~a~~~~~l~ 84 (87)
+..+.++.+...--..+...+++.+.+.++||++ |-..-..+.+..........+++++.++.
T Consensus 301 m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~ 365 (464)
T KOG3764|consen 301 MFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLW 365 (464)
T ss_pred ccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHh
Confidence 3434446666555567788899999999999999 53433445555555555556777765543
No 229
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=88.77 E-value=1.7 Score=27.76 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=20.0
Q ss_pred ccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchh
Q psy15540 12 GDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK 57 (87)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 57 (87)
.|.+.+ +.+.+.+ .+....+..+...++ .++++||..||
T Consensus 215 lp~~L~---~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~ 253 (368)
T TIGR00903 215 LEAALR---PAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARA 253 (368)
T ss_pred HHHHHH---HCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhh
Confidence 344444 3344433 455555555544444 46677776544
No 230
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=87.65 E-value=2.8 Score=27.57 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=44.8
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhh-hhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVD-TVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
.++.+..|.+.++.....|..++-...+.+.. |.++|+.-..++....++.....++
T Consensus 238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a 295 (403)
T PF03209_consen 238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA 295 (403)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999888887755 7777777777777776655554433
No 231
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=87.34 E-value=0.58 Score=30.38 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=41.8
Q ss_pred cccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
.+.+..+...++..+.-.+.-...+++..|+|.|+++.++.+...+-..+.+..
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~ 293 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF 293 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555556556666778999999999999999999999988888877
No 232
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=87.28 E-value=2.6 Score=28.04 Aligned_cols=52 Identities=12% Similarity=0.201 Sum_probs=36.1
Q ss_pred hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHH-HHHHHHHHHHHHhcc
Q psy15540 28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLA-VPTLVGWGLIIWSQS 79 (87)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~-~~~~~~~~~~~~a~~ 79 (87)
..+...++..+-..+-.|..|..+|+.|+||-..... .+..+......++++
T Consensus 59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~ 111 (438)
T COG2270 59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP 111 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666667777889999999999997766544 444555666666655
No 233
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=87.10 E-value=3.7 Score=27.57 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=41.1
Q ss_pred ccchhHHHHHHhhHhhhhh-hhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 25 TESDLSFIGSSMALGAVFG-SPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~-~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
+.+...++.+...+...+. .++.+++++|++|++.+......+.....++++.
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~v 94 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFV 94 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHH
Confidence 4467888888877665665 8889999999999999988777777666665543
No 234
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=86.99 E-value=2.6 Score=27.18 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=26.3
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhh-hhhchhH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLV-DTVGRKN 58 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~grr~ 58 (87)
..+.++.+.++.......+..++..+.+.+. |+.++|.
T Consensus 248 ~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 286 (413)
T PRK15403 248 AGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF 286 (413)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence 4578888888887767777777777776654 5555443
No 235
>KOG2816|consensus
Probab=86.65 E-value=3.5 Score=27.57 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=50.1
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhh-hhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVG-NLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
.++.++.+.+.+.+.......++..+.. .+...+|-|+....+...-.+...+.+++++.+++
T Consensus 271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~ 334 (463)
T KOG2816|consen 271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMM 334 (463)
T ss_pred ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhh
Confidence 6788899998777776666666655555 78999999998888888888999999999887763
No 236
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=85.59 E-value=3.1 Score=27.51 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=35.3
Q ss_pred hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy15540 28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG 72 (87)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 72 (87)
..++......+|..+++++.+.+.|.+|-|..+....+...++.+
T Consensus 142 ~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 142 GFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLL 186 (475)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 457777788899999999999999999999888776654444433
No 237
>KOG3574|consensus
Probab=83.92 E-value=1.3 Score=29.45 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=35.6
Q ss_pred ceeeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhh-----hhchhHHHHH
Q psy15540 2 GTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVD-----TVGRKNTMLL 62 (87)
Q Consensus 2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~grr~~~~~ 62 (87)
|+.+|... .+|.+.+ .-+.+-++++.+...+.- ..--+.+.++.| |+|||+.-++
T Consensus 44 GiP~GL~~-~iP~lL~---ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 44 GIPLGLIG-AIPLLLQ---AKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred CCchhHhh-hhHHHhc---CCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceee
Confidence 55666666 6787776 556676666665443321 112456788888 9999987654
No 238
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=83.22 E-value=3.4 Score=27.19 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhc-----hhHHHHHHH-HHHHHHHHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG-----RKNTMLLLA-VPTLVGWGLII 75 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~-~~~~~~~~~~~ 75 (87)
|++++....+.+.++..+.... .+..|+.+|+.+ ||.-++... ++...+..+.+
T Consensus 9 EL~vpA~lv~~lval~~~~ap~-R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap 68 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVAPL-RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAP 68 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHHH-HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHH
Confidence 5677777788888877777655 888899999999 997777644 44444444433
No 239
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=82.35 E-value=6.8 Score=26.19 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=33.7
Q ss_pred hHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH
Q psy15540 29 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGW 71 (87)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 71 (87)
.+.......+|..++++..+++.|++|-|..+.+..+...++.
T Consensus 152 ~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 152 FTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 4555667788999999999999999999998887765444443
No 240
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=81.99 E-value=7.2 Score=25.84 Aligned_cols=60 Identities=22% Similarity=0.183 Sum_probs=41.0
Q ss_pred CccccchhH-HHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540 22 FPVTESDLS-FIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 22 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~ 81 (87)
.+++++|.. -+.-..........++...+.|..+.|++++...+...+...+.-+.++..
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~ 95 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVL 95 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 566766653 222233344555566677899999999999998888777777766666544
No 241
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=81.57 E-value=4.1 Score=27.05 Aligned_cols=47 Identities=15% Similarity=-0.009 Sum_probs=39.7
Q ss_pred CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHH
Q psy15540 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL 68 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 68 (87)
-|.++...+.+-+...+....+.+...++.+|+|..+.=..+.....
T Consensus 288 ~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~ 334 (432)
T PF06963_consen 288 QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQW 334 (432)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 38899999999999999999999999999999998877666655443
No 242
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=81.47 E-value=3.6 Score=25.63 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=25.7
Q ss_pred HHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHH
Q psy15540 30 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL 62 (87)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 62 (87)
+-+.....+|..+.+++.|.++|+.|.+..+.+
T Consensus 267 sai~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v 299 (310)
T TIGR01272 267 SGILCLAIVGGAIVPLLQGSLADCLGIQLAFAL 299 (310)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence 334456678888889999999999998877653
No 243
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=81.40 E-value=4.7 Score=27.11 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=45.7
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh----hchhHHHH-HHHHHHHHHHHHHHHhcc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKNTML-LLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~-~~~~~~~~~~~~~~~a~~ 79 (87)
..|+++...+.+..+.-+-=++.-|+.|.+.|| +|||+-.+ .+.+...+...++..+++
T Consensus 42 v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~ 105 (467)
T COG2211 42 VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPD 105 (467)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCC
Confidence 568888888888888878888888999999986 56655544 566888888877777775
No 244
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=80.12 E-value=7.1 Score=26.36 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=36.2
Q ss_pred hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540 28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI 74 (87)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 74 (87)
..++......++..+++.+.+++.+++|-+..+..+.+...++.+..
T Consensus 139 gf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 139 GFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence 46777777778999999999999999999998877665554444443
No 245
>KOG3098|consensus
Probab=79.33 E-value=7 Score=26.28 Aligned_cols=46 Identities=9% Similarity=-0.067 Sum_probs=37.4
Q ss_pred HHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 33 GSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 33 ~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
.++......+.+++.+.+.|+.+.|+.+.++...........-.-.
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N 101 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN 101 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc
Confidence 5556677788899999999999999999999988887776655443
No 246
>KOG0255|consensus
Probab=79.29 E-value=10 Score=25.24 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=32.5
Q ss_pred hhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540 40 AVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80 (87)
Q Consensus 40 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~ 80 (87)
........+...|++|||.....+.....++.+..++....
T Consensus 363 ~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~ 403 (521)
T KOG0255|consen 363 ELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD 403 (521)
T ss_pred HhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33445555788999999999999999999988888876653
No 247
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=79.15 E-value=4.4 Score=21.67 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=40.3
Q ss_pred ccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 25 TESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
.++..+...+.+.=.....++.+++..|+..+.+-=.++..+..++..+..+.
T Consensus 52 ~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 52 QPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred CcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 34667777777777778889999999999888877778887777776655443
No 248
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=78.88 E-value=8.1 Score=25.82 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=32.7
Q ss_pred hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHH
Q psy15540 28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL 68 (87)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 68 (87)
..++.....++|..+++.+.+++.|.+|-|..+.+..+...
T Consensus 144 ~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~ 184 (489)
T PRK10207 144 AFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLI 184 (489)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 45667777889999999999999999999988877544333
No 249
>PRK02237 hypothetical protein; Provisional
Probab=76.61 E-value=8.2 Score=20.72 Aligned_cols=52 Identities=21% Similarity=0.124 Sum_probs=39.2
Q ss_pred chhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
+..+...+.+.=.....++.+++..|+..+-+-=.++..+..++..+..+.+
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 4577777777777778899999999998877776778777777766554443
No 250
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=75.63 E-value=13 Score=25.08 Aligned_cols=45 Identities=9% Similarity=-0.050 Sum_probs=29.9
Q ss_pred HHhhHhhhhhhhhhhhhhhhhch-hHHHHHHHHHHHHHHHHHHHhc
Q psy15540 34 SSMALGAVFGSPVVGNLVDTVGR-KNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 34 ~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~a~ 78 (87)
..+.+...+..++..++.+|+|+ |++...+.++..++.....+..
T Consensus 312 ~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~ 357 (477)
T TIGR01301 312 MLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVT 357 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 33444445666677889999984 6776788777776666665433
No 251
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=75.05 E-value=7.3 Score=22.91 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=17.8
Q ss_pred hhHhhhhhhhhhhhhhhhhch
Q psy15540 36 MALGAVFGSPVVGNLVDTVGR 56 (87)
Q Consensus 36 ~~~~~~~~~~~~g~l~d~~gr 56 (87)
+.++..++++..|++.||..+
T Consensus 91 yL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 91 YLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 566778889999999999986
No 252
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=74.34 E-value=8.9 Score=21.61 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=18.1
Q ss_pred hhHhhhhhhhhhhhhhhhhchh
Q psy15540 36 MALGAVFGSPVVGNLVDTVGRK 57 (87)
Q Consensus 36 ~~~~~~~~~~~~g~l~d~~grr 57 (87)
+.++..+.+...|++.+|..++
T Consensus 62 yl~gf~~~a~i~g~~~~~~~~~ 83 (148)
T PF02632_consen 62 YLLGFPLAALIIGLLAERLKRS 83 (148)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 5677788888999999998775
No 253
>KOG2563|consensus
Probab=70.23 E-value=9.7 Score=25.76 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=29.9
Q ss_pred ccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhH
Q psy15540 23 PVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKN 58 (87)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 58 (87)
+.+....++......++.+++....|.+.||.+.-+
T Consensus 297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk 332 (480)
T KOG2563|consen 297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK 332 (480)
T ss_pred cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 444467899999999999999999999999976543
No 254
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=68.75 E-value=2 Score=29.27 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=32.7
Q ss_pred ceeeeeccccccccccCCCCCccccchhHHHHHHh---hHhhhhhhhhhhhhhhhhchhHHHHH
Q psy15540 2 GTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSM---ALGAVFGSPVVGNLVDTVGRKNTMLL 62 (87)
Q Consensus 2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~grr~~~~~ 62 (87)
|+..|.....+|.+..+. ..+.+-++++.+.-.. .+-..=.++.=..-..|+||||..++
T Consensus 13 GiP~GL~~gsiPflL~~~-~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWii 75 (544)
T PF13000_consen 13 GIPLGLAFGSIPFLLQSM-AKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWII 75 (544)
T ss_pred Ccccccccccchhhhccc-cCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhh
Confidence 556677666778877620 0355666655443321 12212223333445779999988664
No 255
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=67.67 E-value=25 Score=23.53 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=28.2
Q ss_pred hHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540 37 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 37 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 75 (87)
.+...+..+..|...||..|.++...+.+...+.....+
T Consensus 48 ~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~ 86 (432)
T PF06963_consen 48 SLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASC 86 (432)
T ss_pred HHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHH
Confidence 344555567778999999999998888777665554444
No 256
>KOG3762|consensus
Probab=65.86 E-value=3.7 Score=28.37 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=49.3
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
+.+..+...+........+-.+.-++.+++.+|+|+-+++..+++...+-.+..+..+|+|..
T Consensus 400 d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~v 462 (618)
T KOG3762|consen 400 DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMV 462 (618)
T ss_pred hcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchhe
Confidence 445455556666666667777778888999999999999999999988888888888887653
No 257
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=58.04 E-value=12 Score=19.19 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=9.5
Q ss_pred hhhhhhhhhhhhhhhchh
Q psy15540 40 AVFGSPVVGNLVDTVGRK 57 (87)
Q Consensus 40 ~~~~~~~~g~l~d~~grr 57 (87)
..+-....|.+.||..||
T Consensus 88 ~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 88 FLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 344455667777777665
No 258
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=55.85 E-value=3.8 Score=27.87 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=0.0
Q ss_pred CCccccchhHHHHHHhh-Hhhhhhhhhhhhhhhhhchh
Q psy15540 21 PFPVTESDLSFIGSSMA-LGAVFGSPVVGNLVDTVGRK 57 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~grr 57 (87)
++++++++.+.+..... .+..+|.+++|++..|+.-+
T Consensus 335 QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~ 372 (539)
T PF03137_consen 335 QFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLS 372 (539)
T ss_dssp --------------------------------------
T ss_pred HhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCc
Confidence 88999999888887654 57888999999999998543
No 259
>KOG3098|consensus
Probab=55.10 E-value=16 Score=24.61 Aligned_cols=41 Identities=34% Similarity=0.495 Sum_probs=26.9
Q ss_pred hhHhhhhhhhhhhhh---hhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 36 MALGAVFGSPVVGNL---VDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 36 ~~~~~~~~~~~~g~l---~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
..++..++....+.+ .+++||++.+.++..+..+..++.-.
T Consensus 288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l 331 (461)
T KOG3098|consen 288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHL 331 (461)
T ss_pred HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhc
Confidence 344555544444444 57788889888888888776665543
No 260
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=54.18 E-value=29 Score=17.70 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=25.6
Q ss_pred hhhhhhhhhhhhhhch-------hHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 41 VFGSPVVGNLVDTVGR-------KNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 41 ~~~~~~~g~l~d~~gr-------r~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
....+..++..+|..+ ++.+..+.++...+.++.+...+
T Consensus 32 ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS 77 (86)
T PF10785_consen 32 TAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRS 77 (86)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555666666665 67788888887777777765443
No 261
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=53.18 E-value=44 Score=22.06 Aligned_cols=49 Identities=4% Similarity=0.059 Sum_probs=36.0
Q ss_pred cccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy15540 24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG 72 (87)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 72 (87)
+++...+.+..+..++..+|.........+..-|+++..+.++..+..+
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l 300 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASL 300 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 7777788888778888888888887776667777777776666554443
No 262
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=50.13 E-value=47 Score=22.84 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=36.2
Q ss_pred HHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 31 FIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 31 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
......++|..++++.++++++++|....+-.+.+...++.....+.
T Consensus 159 ~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 159 LFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred EEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 33334568889999999999999998888888887777776665543
No 263
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=49.92 E-value=23 Score=22.06 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=18.3
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHhccccccccc
Q psy15540 54 VGRKNTMLLLAVPTLVGWGLIIWSQSVSRHGSI 86 (87)
Q Consensus 54 ~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 86 (87)
+|||+-.+..+++......+.-++-+.|.+.++
T Consensus 7 ~Gwrk~cly~~vllL~il~iiNL~LTiwIl~Vl 39 (264)
T PF04790_consen 7 YGWRKRCLYLFVLLLFILAIINLALTIWILKVL 39 (264)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 566665555555555445555555555555444
No 264
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=46.65 E-value=97 Score=21.49 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=43.6
Q ss_pred ccccchhHHHHHHhhH-hhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 23 PVTESDLSFIGSSMAL-GAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 23 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
...++...++-+...+ ++.+-.++..++.++..|++++...+..+...-+++++
T Consensus 57 ~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~ 111 (509)
T COG3202 57 RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAF 111 (509)
T ss_pred cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888887776 77777899999999999999999888888777777764
No 265
>KOG1237|consensus
Probab=46.06 E-value=50 Score=23.00 Aligned_cols=57 Identities=14% Similarity=0.043 Sum_probs=36.6
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHh
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-GRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~a 77 (87)
+++.......-..+.+.--....++..+.++|.+ ||-+++.++..+...+..+..++
T Consensus 67 ~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~ 124 (571)
T KOG1237|consen 67 ELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLS 124 (571)
T ss_pred HhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444444544444555678889999976 55577778888877776555443
No 266
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=43.58 E-value=67 Score=18.78 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=27.4
Q ss_pred hHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540 37 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 37 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 75 (87)
.+...++.++.-.+..|.+||.++.+...+..+....++
T Consensus 38 ~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G 76 (186)
T PF09605_consen 38 AIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLMG 76 (186)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 344455666667789999999988887777766554443
No 267
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=42.92 E-value=38 Score=22.19 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=20.0
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540 49 NLVDTVGRKNTMLLLAVPTLVGWGLI 74 (87)
Q Consensus 49 ~l~d~~grr~~~~~~~~~~~~~~~~~ 74 (87)
++..|+-||+.++++.+++.+...+.
T Consensus 79 F~~~r~~~R~~~~~G~~~f~~~l~~l 104 (385)
T PF06898_consen 79 FFLKRLRRRKGFVAGIVLFLALLYIL 104 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999998888877655443
No 268
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=42.82 E-value=66 Score=18.53 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=26.1
Q ss_pred hhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 39 GAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 39 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
-..++...+....+|..+|.-+..+.....+.......
T Consensus 109 ~~l~~~~~~~~~~~~~~~R~~~i~ag~~v~l~~~~~~l 146 (194)
T PF07698_consen 109 YSLVSGIVAIFSVRRIRSRSDIIKAGLLVGLVNALMIL 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777778888998888777776666655555443
No 269
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=42.79 E-value=88 Score=19.94 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=37.9
Q ss_pred hHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540 29 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a 77 (87)
..+.....++|..++....+++-|++|....+.+..+...++.+.+...
T Consensus 74 F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 74 FNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 3466666778888888889999999999998888888877777666544
No 270
>COG2119 Predicted membrane protein [Function unknown]
Probab=42.71 E-value=73 Score=18.98 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=27.4
Q ss_pred hHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH
Q psy15540 37 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGW 71 (87)
Q Consensus 37 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 71 (87)
.+...++...+.++++|+..|++..++.+++.+..
T Consensus 144 ~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 144 ILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 34556667778899999999999888888776655
No 271
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=42.37 E-value=42 Score=22.04 Aligned_cols=26 Identities=12% Similarity=0.062 Sum_probs=20.2
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540 49 NLVDTVGRKNTMLLLAVPTLVGWGLI 74 (87)
Q Consensus 49 ~l~d~~grr~~~~~~~~~~~~~~~~~ 74 (87)
++..|+-||+.+.++.+++.+...+.
T Consensus 76 F~~~r~~kRk~~~~G~~~f~~ll~~l 101 (382)
T TIGR02876 76 FLFKRLRKRPGILIGILLFLAIVYFL 101 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999988887655443
No 272
>KOG3097|consensus
Probab=41.67 E-value=1e+02 Score=20.48 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=37.4
Q ss_pred ccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHH
Q psy15540 23 PVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLV 69 (87)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 69 (87)
.+..++.+.....+.++....+...|.+..++||......+.+....
T Consensus 306 ~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~ 352 (390)
T KOG3097|consen 306 ALGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLL 352 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 44456788888888899888889999999999999887776665543
No 273
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=41.53 E-value=75 Score=18.78 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=16.8
Q ss_pred hhHhhhhhhhhhhhhhhhhchhHHHHHH
Q psy15540 36 MALGAVFGSPVVGNLVDTVGRKNTMLLL 63 (87)
Q Consensus 36 ~~~~~~~~~~~~g~l~d~~grr~~~~~~ 63 (87)
...+..+|..++.++.+|..+|......
T Consensus 202 ~~~~~~~G~~lG~~~~~~i~~~~~~~~~ 229 (240)
T PF01925_consen 202 LLPGAFLGAFLGAKLARKIPQKVFRRIF 229 (240)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455566666667777777765544433
No 274
>COG1470 Predicted membrane protein [Function unknown]
Probab=40.95 E-value=23 Score=24.14 Aligned_cols=9 Identities=22% Similarity=0.582 Sum_probs=7.6
Q ss_pred hhhhhhchh
Q psy15540 49 NLVDTVGRK 57 (87)
Q Consensus 49 ~l~d~~grr 57 (87)
++..|+|||
T Consensus 505 fviRK~GRR 513 (513)
T COG1470 505 FVIRKFGRR 513 (513)
T ss_pred hhhHHhcCC
Confidence 378999998
No 275
>KOG3626|consensus
Probab=40.94 E-value=33 Score=24.75 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=30.2
Q ss_pred CCccccchhHHHHHHh-hHhhhhhhhhhhhhhhhhchh
Q psy15540 21 PFPVTESDLSFIGSSM-ALGAVFGSPVVGNLVDTVGRK 57 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~grr 57 (87)
+++++.+.+..+.... ..+..+|..++|.+..|+.-+
T Consensus 422 Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~ 459 (735)
T KOG3626|consen 422 QFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS 459 (735)
T ss_pred HcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence 8899999998888654 467778899999999987654
No 276
>KOG1330|consensus
Probab=39.17 E-value=52 Score=22.58 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=25.9
Q ss_pred cccchhHHHHHHhhHhhhhhhhhhhhhhhhhch
Q psy15540 24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR 56 (87)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 56 (87)
.+..+..++..+...+..+|.+++|.++||+.|
T Consensus 280 ~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~ 312 (493)
T KOG1330|consen 280 FDHNATLIFGGVTCAGGSLGVLFGGIISDKLSR 312 (493)
T ss_pred CccccchhhhhHHHhhchhhheehHHHHHHHHH
Confidence 345566677778888999999999999999544
No 277
>KOG4830|consensus
Probab=38.32 E-value=19 Score=23.03 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=27.0
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhh---------hhhhhhchhHHHH
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVG---------NLVDTVGRKNTML 61 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------~l~d~~grr~~~~ 61 (87)
+.+++++..+.+..+..+.-.+..++.| +..||+|||+..-
T Consensus 46 qiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~wh 95 (412)
T KOG4830|consen 46 QIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSWH 95 (412)
T ss_pred HhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeeee
Confidence 4566676666666666666666666654 4568999997543
No 278
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=37.11 E-value=1.3e+02 Score=20.23 Aligned_cols=54 Identities=9% Similarity=0.022 Sum_probs=33.6
Q ss_pred hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHH--HHHHHHHHHHHHHHhcccc
Q psy15540 28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL--LAVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~--~~~~~~~~~~~~~~a~~~~ 81 (87)
-.+...+...+.+.++.+..|++..++.+-.-+.. ..++.+...++++..++.+
T Consensus 286 YNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iw 341 (412)
T PF01770_consen 286 YNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIW 341 (412)
T ss_pred cchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 35777777777777888888988777776443333 3333344455555555544
No 279
>PRK03612 spermidine synthase; Provisional
Probab=35.06 E-value=54 Score=22.45 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=22.5
Q ss_pred chhHHHHHHhhHhhhhhhhhhhhh-hhhhchhHHHH
Q psy15540 27 SDLSFIGSSMALGAVFGSPVVGNL-VDTVGRKNTML 61 (87)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~g~l-~d~~grr~~~~ 61 (87)
...+.+...-.+|+.+|++..+.+ ...+|-..+..
T Consensus 145 ~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~ 180 (521)
T PRK03612 145 HNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAA 180 (521)
T ss_pred hhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 346677777777777777776654 45677554433
No 280
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=34.59 E-value=47 Score=14.40 Aligned_cols=7 Identities=14% Similarity=0.406 Sum_probs=2.6
Q ss_pred chhHHHH
Q psy15540 55 GRKNTML 61 (87)
Q Consensus 55 grr~~~~ 61 (87)
++|.++.
T Consensus 19 ~P~~Vl~ 25 (41)
T PF03911_consen 19 DPKTVLI 25 (41)
T ss_dssp SCCHHHH
T ss_pred CCeehHH
Confidence 3333333
No 281
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=33.43 E-value=80 Score=20.56 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=12.3
Q ss_pred hhhhhhhchhHHHHHHHHH
Q psy15540 48 GNLVDTVGRKNTMLLLAVP 66 (87)
Q Consensus 48 g~l~d~~grr~~~~~~~~~ 66 (87)
.++.||+|+|.......+.
T Consensus 70 e~l~~Ryg~~~~~~~~~~~ 88 (407)
T TIGR00813 70 EYLEKRFGKRILRGLSVLS 88 (407)
T ss_pred HHHHHHhCchHHHHHHHHH
Confidence 4678899987555544433
No 282
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=32.77 E-value=1.7e+02 Score=20.17 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=36.9
Q ss_pred ccchhHHHHHHhhH-hhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 25 TESDLSFIGSSMAL-GAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 25 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
+++...++-....+ ....-.....+++|+++|++++.+....+...-.++++
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~ 108 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAF 108 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665444 44445777899999999999998877777665555553
No 283
>PRK11469 hypothetical protein; Provisional
Probab=32.77 E-value=1.1e+02 Score=18.03 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=14.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHH
Q psy15540 46 VVGNLVDTVGRKNTMLLLAVPTLVGW 71 (87)
Q Consensus 46 ~~g~l~d~~grr~~~~~~~~~~~~~~ 71 (87)
....+.+++|||.-+..+.++..++.
T Consensus 154 lG~~~g~~~g~~a~~lgG~iLI~iGi 179 (188)
T PRK11469 154 VGRFIGSIIGKKAEILGGLVLIGIGV 179 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556676666666666555544
No 284
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=32.71 E-value=55 Score=14.66 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=14.1
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 51 VDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 51 ~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
-+|+-|.+.-+++.++..+..++..+
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~ 34 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIF 34 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 45565666666666655544444433
No 285
>PRK03612 spermidine synthase; Provisional
Probab=32.64 E-value=1.7e+02 Score=20.18 Aligned_cols=36 Identities=11% Similarity=0.078 Sum_probs=26.0
Q ss_pred CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchh
Q psy15540 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK 57 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 57 (87)
+|-+....+.+.+.+.+|..+|..+.+.+.++.-|+
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~ 80 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG 80 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 355566778888888899999988888776443333
No 286
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=31.83 E-value=41 Score=12.92 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=10.1
Q ss_pred hhchhHHHHHHHHHHHH
Q psy15540 53 TVGRKNTMLLLAVPTLV 69 (87)
Q Consensus 53 ~~grr~~~~~~~~~~~~ 69 (87)
++.||..+..+......
T Consensus 1 ~~sRR~fLk~~~a~~a~ 17 (26)
T PF10518_consen 1 NLSRRQFLKGGAAAAAA 17 (26)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 35677766666555443
No 287
>PF08129 Antimicrobial17: Alpha/beta enterocin family; InterPro: IPR012950 This entry consists of the alpha enterocins and lactococcin G peptides. These peptides have some antimicrobial properties; they inhibit the growth of Enterococcus spp. and a few other Gram-positive bacteria. These peptides act as pore-forming toxins that create cell membrane channels through a barrel-stave mechanism and thus produce an ionic imbalance in the cell. This family of antimicrobial peptides belongs to the class II group of bacteriocin [].; PDB: 2JPL_A 2JPJ_A.
Probab=31.65 E-value=51 Score=15.02 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=12.8
Q ss_pred hhHhhhhhhhhhhhhhhhhchhH
Q psy15540 36 MALGAVFGSPVVGNLVDTVGRKN 58 (87)
Q Consensus 36 ~~~~~~~~~~~~g~l~d~~grr~ 58 (87)
+.++-..|..---.-+||++||+
T Consensus 34 ywv~k~mgnmsdvnqa~rinrkk 56 (57)
T PF08129_consen 34 YWVGKAMGNMSDVNQASRINRKK 56 (57)
T ss_dssp HHHHHHHTS-CHHHHHHHHHHHH
T ss_pred HHHHHHhcChhhhhHHHHhcccc
Confidence 44444444444445677888875
No 288
>KOG0637|consensus
Probab=31.50 E-value=48 Score=22.76 Aligned_cols=49 Identities=12% Similarity=-0.126 Sum_probs=30.7
Q ss_pred HHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540 30 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ 78 (87)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~ 78 (87)
.|-..+..+...+.+....++.||+|-|+.+..+...+.++..+.+..+
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~ 383 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVL 383 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhh
Confidence 4444455566667778888999999966555555554555544444443
No 289
>COG1738 yhhQ Uncharacterized member of the PurR regulon [General function prediction only]
Probab=30.98 E-value=1.2e+02 Score=18.67 Aligned_cols=34 Identities=24% Similarity=0.025 Sum_probs=18.5
Q ss_pred hhhhhhhhhhhhhhchhHHHH---HHHHHHHHHHHHH
Q psy15540 41 VFGSPVVGNLVDTVGRKNTML---LLAVPTLVGWGLI 74 (87)
Q Consensus 41 ~~~~~~~g~l~d~~grr~~~~---~~~~~~~~~~~~~ 74 (87)
...-.......|++|||.... .+.....+..++.
T Consensus 63 p~~Fl~tD~~~e~yG~~~Ark~V~~gf~~~lv~~~l~ 99 (233)
T COG1738 63 PFIFLATDLTVEIYGKKEARKAVFLGFFSALVFSILT 99 (233)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344557889999984433 4444444444333
No 290
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=30.17 E-value=1e+02 Score=17.07 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=13.1
Q ss_pred hhhhhhhhhhhhchhHHHH
Q psy15540 43 GSPVVGNLVDTVGRKNTML 61 (87)
Q Consensus 43 ~~~~~g~l~d~~grr~~~~ 61 (87)
.-+....+.|++|||....
T Consensus 10 ~fl~~Dii~E~yG~~~a~~ 28 (145)
T PF02592_consen 10 TFLITDIISEVYGKKAARK 28 (145)
T ss_pred HHHHHHHHHHHhCHHHHHH
Confidence 3445667889999985544
No 291
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=29.94 E-value=1.8e+02 Score=20.69 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=30.9
Q ss_pred hhHHHHHHhhHhhhhhhhhhhhhhhhhchhH-HHHHHHHHHHHHHHHH
Q psy15540 28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKN-TMLLLAVPTLVGWGLI 74 (87)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-~~~~~~~~~~~~~~~~ 74 (87)
+.++.......+..+++.+.+.+..+.+|-| .++.+.++..++.-.+
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gam 397 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAM 397 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888888888776544 4445655555443333
No 292
>PF08080 zf-RNPHF: RNPHF zinc finger; InterPro: IPR012996 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc-binding domain (CHHC motif) in RNP H and F. The domain is often associated with IPR000504 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WEZ_A 2KG1_A.
Probab=29.38 E-value=18 Score=15.27 Aligned_cols=10 Identities=30% Similarity=0.458 Sum_probs=0.0
Q ss_pred hhhhchhHHH
Q psy15540 51 VDTVGRKNTM 60 (87)
Q Consensus 51 ~d~~grr~~~ 60 (87)
+|++||-...
T Consensus 3 sd~FGRd~~~ 12 (36)
T PF08080_consen 3 SDRFGRDLSY 12 (36)
T ss_dssp ----------
T ss_pred cchhcchhhH
Confidence 6888886543
No 293
>PRK13595 ubiA prenyltransferase; Provisional
Probab=29.09 E-value=1e+02 Score=19.70 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=24.4
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540 49 NLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80 (87)
Q Consensus 49 ~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~ 80 (87)
-+.-++|.|+....+.....++...+...+..
T Consensus 204 Slpv~lG~r~a~~~a~~~~~~a~~~~~~~~~~ 235 (292)
T PRK13595 204 TVATTLGVRGTALYALAWFLLAGALLWPVSRL 235 (292)
T ss_pred echHHhCcHhHHHHHHHHHHHHHHHHHHhcch
Confidence 34567899999999998888888777765543
No 294
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=28.82 E-value=96 Score=16.18 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy15540 56 RKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 56 rr~~~~~~~~~~~~~~~~~~ 75 (87)
+|++++.+..-+.++.++..
T Consensus 2 ~kw~l~Lc~~SF~~G~lft~ 21 (95)
T PF13334_consen 2 RKWVLLLCIASFCAGMLFTN 21 (95)
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 67777777777777666543
No 295
>PF06374 NDUF_C2: NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); InterPro: IPR009423 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006120 mitochondrial electron transport, NADH to ubiquinone, 0005743 mitochondrial inner membrane
Probab=27.65 E-value=89 Score=17.09 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=13.6
Q ss_pred hhhhhhhhhhchhHHHHHHH
Q psy15540 45 PVVGNLVDTVGRKNTMLLLA 64 (87)
Q Consensus 45 ~~~g~l~d~~grr~~~~~~~ 64 (87)
+..+.+.+.+.||+.+..+.
T Consensus 36 ~~~~ll~N~~~rRP~~~sGi 55 (117)
T PF06374_consen 36 FCTALLDNAINRRPPLKSGI 55 (117)
T ss_pred HHHHHHHHHHhcCCchhhcc
Confidence 33456788888998874443
No 296
>PRK11212 hypothetical protein; Provisional
Probab=26.44 E-value=1.5e+02 Score=17.89 Aligned_cols=26 Identities=15% Similarity=-0.017 Sum_probs=17.2
Q ss_pred hHhhhhhhhhhhhhhhhhchhHHHHH
Q psy15540 37 ALGAVFGSPVVGNLVDTVGRKNTMLL 62 (87)
Q Consensus 37 ~~~~~~~~~~~g~l~d~~grr~~~~~ 62 (87)
.+...+.-+....++|.+|||..-..
T Consensus 46 ~i~yp~tFl~tDIl~EvyG~k~Ar~~ 71 (210)
T PRK11212 46 AFSFPFIFLATDLTVRIFGAPLARRI 71 (210)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 34444445567789999999955443
No 297
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=26.33 E-value=1.6e+02 Score=18.04 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=24.7
Q ss_pred hhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH
Q psy15540 36 MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGW 71 (87)
Q Consensus 36 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 71 (87)
..+|..+|..+...+.||+.+......+.....++.
T Consensus 11 Il~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi 46 (226)
T PF04474_consen 11 ILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGI 46 (226)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHH
Confidence 456778888888889999866655555555554443
No 298
>PF02827 PKI: cAMP-dependent protein kinase inhibitor; InterPro: IPR004171 Members of this family are extremely potent competitive inhibitors of cAMP-dependent protein kinase activity. These proteins interact with the catalytic subunit of the enzyme after the cAMP-induced dissociation of its regulatory chains.; GO: 0004862 cAMP-dependent protein kinase inhibitor activity, 0006469 negative regulation of protein kinase activity; PDB: 3QAL_I 3QAM_I 3E8C_J 1YDS_I 2UZU_I 3E8E_Q 2UZV_2 2UZT_B 2UZW_I 2GNL_I ....
Probab=26.24 E-value=15 Score=18.34 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=5.2
Q ss_pred hhhhhchhHHH
Q psy15540 50 LVDTVGRKNTM 60 (87)
Q Consensus 50 l~d~~grr~~~ 60 (87)
-++|-|||..+
T Consensus 12 ssgRtGRRNAl 22 (74)
T PF02827_consen 12 SSGRTGRRNAL 22 (74)
T ss_dssp TSSTSS----B
T ss_pred hcccccccccc
Confidence 37899999764
No 299
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=25.85 E-value=2.1e+02 Score=20.02 Aligned_cols=54 Identities=9% Similarity=-0.119 Sum_probs=31.5
Q ss_pred hhHHHHHHhhHhhhhhhhhhhhhhhhhchh--HHHHHHHHHHHHHHHHHHHhcccc
Q psy15540 28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRK--NTMLLLAVPTLVGWGLIIWSQSVS 81 (87)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~~~~a~~~~ 81 (87)
-.+...++..+.+.+..+..|++..++.|- ..+-+..++.....++++..+|.+
T Consensus 299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw 354 (511)
T TIGR00806 299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIW 354 (511)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchH
Confidence 455666666666677788888887777542 233333344444455555555554
No 300
>PF14068 YuiB: Putative membrane protein
Probab=25.58 E-value=38 Score=17.99 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=19.3
Q ss_pred HHHHHHhhHhhhhhhhhhhhhhhhhchh
Q psy15540 30 SFIGSSMALGAVFGSPVVGNLVDTVGRK 57 (87)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~g~l~d~~grr 57 (87)
....-....+..+|+..+|+..+..++|
T Consensus 70 ~~~Di~il~~Gl~GAi~SG~tIr~LRk~ 97 (102)
T PF14068_consen 70 ALADILILSSGLAGAIVSGITIRTLRKK 97 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444455667788888888888776544
No 301
>TIGR00697 conserved hypothetical integral membrane protein. All known members of this family are proteins or 210-250 amino acids in length. Conserved regions of hydrophobicity suggest that all members of the family are integral membrane proteins.
Probab=25.36 E-value=1.6e+02 Score=17.57 Aligned_cols=25 Identities=12% Similarity=-0.081 Sum_probs=16.5
Q ss_pred HhhhhhhhhhhhhhhhhchhHHHHH
Q psy15540 38 LGAVFGSPVVGNLVDTVGRKNTMLL 62 (87)
Q Consensus 38 ~~~~~~~~~~g~l~d~~grr~~~~~ 62 (87)
+.....-+....++|.+|||.....
T Consensus 37 ~~yp~tfl~~Dii~E~yG~~~A~~~ 61 (202)
T TIGR00697 37 VYYPGTFLATDVLREIYGKKDARKA 61 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344445556788999999965543
No 302
>PHA02047 phage lambda Rz1-like protein
Probab=24.76 E-value=60 Score=17.12 Aligned_cols=22 Identities=14% Similarity=-0.028 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q psy15540 61 LLLAVPTLVGWGLIIWSQSVSR 82 (87)
Q Consensus 61 ~~~~~~~~~~~~~~~~a~~~~~ 82 (87)
.+..++........++..++.+
T Consensus 7 ~~~~~v~~~~g~~y~~~~~~r~ 28 (101)
T PHA02047 7 AILVLVVVALGASYGFVQSYRA 28 (101)
T ss_pred HHHHHHHHHhhhhHHHHHHHHH
Confidence 3333333333333344443433
No 303
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=23.08 E-value=1e+02 Score=14.68 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q psy15540 56 RKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 56 rr~~~~~~~~~~~~~~~~~~~a 77 (87)
||+...+..+...+..+++.++
T Consensus 28 RrRrc~~~v~~v~~~~~~c~~S 49 (60)
T PF06072_consen 28 RRRRCRLAVAIVFAVVALCVLS 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334433
No 304
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=22.83 E-value=1.4e+02 Score=15.97 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=18.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540 46 VVGNLVDTVGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 46 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 75 (87)
+...+.+++|+++...........+.+...
T Consensus 32 ~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~ 61 (145)
T PF01694_consen 32 FGSLLERRLGSRRFLALYLLSGLLGSLLSL 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhccchHHHHHHHHHHHhhhhccc
Confidence 344567777888877765555555555443
No 305
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=22.42 E-value=2e+02 Score=17.64 Aligned_cols=34 Identities=12% Similarity=-0.009 Sum_probs=21.7
Q ss_pred CCCccccchhHHHHHHhhHhhhhhhhhhhhhhhh
Q psy15540 20 YPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT 53 (87)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 53 (87)
+++..++...-..++++++...+-.+..-....|
T Consensus 16 ~nY~~s~yiAEf~NtlSNl~fi~~al~gl~~~~~ 49 (262)
T PF05875_consen 16 ENYVVSPYIAEFWNTLSNLAFIVAALYGLYLARR 49 (262)
T ss_pred hccccCcccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555666666677777777766666665555544
No 306
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=22.24 E-value=1.1e+02 Score=14.40 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=12.8
Q ss_pred HhhhhhhhhhhhhhhhhchhHHHHHHHH
Q psy15540 38 LGAVFGSPVVGNLVDTVGRKNTMLLLAV 65 (87)
Q Consensus 38 ~~~~~~~~~~g~l~d~~grr~~~~~~~~ 65 (87)
+...+|......+.++++++--.+.+.+
T Consensus 35 ~~~~~G~~~G~~~~~~~~~~~~~igg~i 62 (67)
T PF02659_consen 35 IMPLLGLLLGRRLGRFIGSYAEWIGGII 62 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555543333333
No 307
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=22.07 E-value=54 Score=17.61 Aligned_cols=43 Identities=16% Similarity=-0.051 Sum_probs=26.1
Q ss_pred hHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH
Q psy15540 29 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGW 71 (87)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 71 (87)
.+.....+.=...+.++.+++..|+..+-+-=.++..++.++.
T Consensus 57 ~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~ 99 (109)
T COG1742 57 FGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGV 99 (109)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhce
Confidence 4445555554556677888888887666555455555554443
No 308
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=21.93 E-value=18 Score=20.44 Aligned_cols=9 Identities=33% Similarity=0.445 Sum_probs=4.8
Q ss_pred hhhhchhHH
Q psy15540 51 VDTVGRKNT 59 (87)
Q Consensus 51 ~d~~grr~~ 59 (87)
.|++|||..
T Consensus 2 ~dk~gRr~l 10 (148)
T PF08144_consen 2 NDKYGRRVL 10 (148)
T ss_pred CCccCceee
Confidence 455665543
No 309
>KOG2615|consensus
Probab=21.18 E-value=1.6e+02 Score=20.13 Aligned_cols=57 Identities=11% Similarity=0.036 Sum_probs=36.2
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhc--hhHHHHHHHHHHHHHHHHHHHh
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG--RKNTMLLLAVPTLVGWGLIIWS 77 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~a 77 (87)
.++.++.+++-+.+...+...+-+....+..||.. -+-.+.....+..-...+...+
T Consensus 291 rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~ 349 (451)
T KOG2615|consen 291 RFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA 349 (451)
T ss_pred ccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc
Confidence 57888888888887777777777777777777766 4444444444444433333333
No 310
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=21.07 E-value=1.5e+02 Score=15.80 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=16.7
Q ss_pred ccccchhHHHHHH-hhHhhhhhhhhhhhhhhhhchhHHHHHHH
Q psy15540 23 PVTESDLSFIGSS-MALGAVFGSPVVGNLVDTVGRKNTMLLLA 64 (87)
Q Consensus 23 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 64 (87)
+++|....+.... ..++..+ .|..+-|..++|-++.+.
T Consensus 33 ~~~e~~~~~~~~~i~~ls~~~----GG~~a~~~~~~kG~l~G~ 71 (116)
T PF12670_consen 33 SLSESILPWLVVIIYILSVFI----GGFYAGRKAGSKGWLHGL 71 (116)
T ss_pred CCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHccchHHHHH
Confidence 4455555444332 3344444 444444444444444333
No 311
>PF06237 DUF1011: Protein of unknown function (DUF1011); InterPro: IPR009357 This is a family of eukaryotic proteins, that include the receptor for porcine endogenous retrovirus subgroup A (PERV-A) [].
Probab=21.06 E-value=1.5e+02 Score=15.76 Aligned_cols=49 Identities=6% Similarity=-0.094 Sum_probs=29.6
Q ss_pred eeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh
Q psy15540 5 LGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV 54 (87)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 54 (87)
....+.++|+++... -........=+..++..+.+.+.+++.-++-.|-
T Consensus 17 n~ltNGvlPSVQsYS-clPYG~~aYHLa~tL~~iAnPlacfla~f~~~rS 65 (101)
T PF06237_consen 17 NALTNGVLPSVQSYS-CLPYGNNAYHLAVTLSSIANPLACFLAMFLPIRS 65 (101)
T ss_pred HHHHcCCcccchhhc-cccccchHHHHHHHHHHHhhHHHHHHHHHHHhch
Confidence 345667778877630 0122344445556667778888888877776553
No 312
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.05 E-value=1.6e+02 Score=16.03 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=10.8
Q ss_pred Hhhhhhhhhhhhhhhhhc
Q psy15540 38 LGAVFGSPVVGNLVDTVG 55 (87)
Q Consensus 38 ~~~~~~~~~~g~l~d~~g 55 (87)
++...-....||+.|||=
T Consensus 53 IsGilVGa~iG~llD~~a 70 (116)
T COG5336 53 ISGILVGAGIGWLLDKFA 70 (116)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 333333445589999873
No 313
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.03 E-value=27 Score=19.85 Aligned_cols=18 Identities=22% Similarity=0.304 Sum_probs=13.8
Q ss_pred hhhhhhhhhhhchhHHHH
Q psy15540 44 SPVVGNLVDTVGRKNTML 61 (87)
Q Consensus 44 ~~~~g~l~d~~grr~~~~ 61 (87)
.--+||+-||||-.+.+.
T Consensus 105 ~~~cgW~kDKfGVSWQi~ 122 (151)
T COG3865 105 AEACGWLKDKFGVSWQIV 122 (151)
T ss_pred hhcceeEecccCcEEEEc
Confidence 456799999999776544
No 314
>PRK01253 preprotein translocase subunit SecG; Reviewed
Probab=20.39 E-value=58 Score=15.13 Aligned_cols=12 Identities=8% Similarity=-0.020 Sum_probs=4.7
Q ss_pred chhHHHHHHHHH
Q psy15540 55 GRKNTMLLLAVP 66 (87)
Q Consensus 55 grr~~~~~~~~~ 66 (87)
++|.++..+.+.
T Consensus 30 ~P~~Vi~~~~~~ 41 (54)
T PRK01253 30 DPKTVIAIGLAL 41 (54)
T ss_pred CCeeeeeeHHHH
Confidence 344444333333
No 315
>COG4723 Phage-related protein, tail component [Function unknown]
Probab=20.38 E-value=48 Score=19.69 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=14.5
Q ss_pred hhhhhhhhchhHHHHHHHHH
Q psy15540 47 VGNLVDTVGRKNTMLLLAVP 66 (87)
Q Consensus 47 ~g~l~d~~grr~~~~~~~~~ 66 (87)
.|.+ .|||||..+.+...-
T Consensus 11 ~G~L-~rFGR~~~l~V~t~a 29 (198)
T COG4723 11 YGDL-QRFGRRLSLYVNTAA 29 (198)
T ss_pred cChH-HHhhhHHhhhhCCHH
Confidence 4667 999999988876543
No 316
>COG4708 Predicted membrane protein [Function unknown]
Probab=20.37 E-value=76 Score=18.20 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=15.6
Q ss_pred hHhhhhhhhhhhhhhhhhchhH
Q psy15540 37 ALGAVFGSPVVGNLVDTVGRKN 58 (87)
Q Consensus 37 ~~~~~~~~~~~g~l~d~~grr~ 58 (87)
.+|-.+.+..++.+.|+.|+|.
T Consensus 144 a~gEfvsl~vg~~~m~kl~kr~ 165 (169)
T COG4708 144 ALGEFVSLYVGALIMDKLGKRI 165 (169)
T ss_pred HHHHHHHHHhhHHHHHHHHhhh
Confidence 4555666677778888888874
No 317
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=20.35 E-value=2.2e+02 Score=17.93 Aligned_cols=37 Identities=8% Similarity=0.045 Sum_probs=20.8
Q ss_pred hhhhhhhhh-hhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540 39 GAVFGSPVV-GNLVDTVGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 39 ~~~~~~~~~-g~l~d~~grr~~~~~~~~~~~~~~~~~~ 75 (87)
.++..-... +.+.+++|+++.+.+-.+...++.+.+.
T Consensus 153 fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~ 190 (276)
T PRK10907 153 FNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQS 190 (276)
T ss_pred HHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH
Confidence 344444434 4556788888876665555545454443
Done!