Query psy15540
Match_columns 87
No_of_seqs 113 out of 1319
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 23:56:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.2 2.9E-12 9.9E-17 80.5 1.8 53 24-76 52-104 (491)
2 3o7q_A L-fucose-proton symport 99.1 2.7E-11 9.4E-16 75.0 2.5 75 6-83 43-120 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.0 4.3E-10 1.5E-14 69.8 4.2 71 9-83 48-122 (451)
4 2gfp_A EMRD, multidrug resista 99.0 1E-10 3.4E-15 71.4 1.0 73 8-83 19-91 (375)
5 4aps_A DI-OR tripeptide H+ sym 98.9 4.6E-09 1.6E-13 66.1 5.7 63 21-83 48-111 (491)
6 2xut_A Proton/peptide symporte 98.7 2.2E-08 7.6E-13 63.5 4.0 59 24-82 51-111 (524)
7 2cfq_A Lactose permease; trans 98.5 5.3E-08 1.8E-12 60.6 2.4 58 10-69 28-85 (417)
8 3o7q_A L-fucose-proton symport 98.0 6.4E-06 2.2E-10 50.9 4.6 60 21-80 289-348 (438)
9 2cfq_A Lactose permease; trans 97.6 6.2E-05 2.1E-09 46.8 4.0 54 26-79 258-311 (417)
10 1pw4_A Glycerol-3-phosphate tr 97.4 0.00019 6.5E-09 44.4 4.5 57 21-77 282-341 (451)
11 4gc0_A D-xylose-proton symport 97.2 0.00052 1.8E-08 43.1 4.7 54 22-75 307-360 (491)
12 4aps_A DI-OR tripeptide H+ sym 95.2 0.0069 2.4E-07 38.0 1.6 55 22-76 314-373 (491)
13 2gfp_A EMRD, multidrug resista 93.2 0.034 1.2E-06 33.7 1.4 36 22-57 230-265 (375)
14 2xut_A Proton/peptide symporte 79.5 1.7 5.7E-05 27.5 3.0 44 30-73 151-194 (524)
15 2g9p_A Antimicrobial peptide l 74.1 1.2 4E-05 16.4 0.7 12 47-58 3-14 (26)
16 4dve_A Biotin transporter BIOY 55.5 26 0.00088 20.1 4.2 23 35-57 101-123 (198)
17 2bzw_B BCL2-antagonist of cell 49.4 6.4 0.00022 14.8 0.7 13 46-58 3-15 (27)
18 1cmk_I CAMP-dependent protein 46.1 2.7 9.1E-05 15.9 -0.6 11 50-60 8-18 (26)
19 2jpj_A Bacteriocin lactococcin 40.3 21 0.00073 14.4 2.3 24 35-58 14-37 (39)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.21 E-value=2.9e-12 Score=80.49 Aligned_cols=53 Identities=23% Similarity=0.375 Sum_probs=48.3
Q ss_pred cccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540 24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76 (87)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 76 (87)
.++++.+++.+.+.+|..+|++++|+++||+|||+++..+.++..++.+.+++
T Consensus 52 ~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~ 104 (491)
T 4gc0_A 52 AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAW 104 (491)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999999999999999999999999999885
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.10 E-value=2.7e-11 Score=74.97 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=65.4
Q ss_pred eeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH---HHhccccc
Q psy15540 6 GWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI---IWSQSVSR 82 (87)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~---~~a~~~~~ 82 (87)
+...+..|.+.+ +++.++++.+++.+...++..++.++.|+++||+|||+++..+.++..++.++. ..+++++.
T Consensus 43 ~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (438)
T 3o7q_A 43 NLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTL 119 (438)
T ss_dssp HHHHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 344555677776 889999999999999999999999999999999999999999999999999988 77777655
Q ss_pred c
Q psy15540 83 H 83 (87)
Q Consensus 83 l 83 (87)
+
T Consensus 120 l 120 (438)
T 3o7q_A 120 F 120 (438)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.98 E-value=4.3e-10 Score=69.75 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=62.5
Q ss_pred cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH----hcccccc
Q psy15540 9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW----SQSVSRH 83 (87)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~----a~~~~~l 83 (87)
.+..|.+.+ ++ .++.+.+++.+...++..++.++.|+++||+|||+++..+.++..++.++.++ +++++.+
T Consensus 48 ~~~~~~~~~---~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (451)
T 1pw4_A 48 ALAMPYLVE---QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVM 122 (451)
T ss_dssp HHHHHHTTS---ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHH
T ss_pred HHHHHHHHH---Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence 344555655 77 89999999999999999999999999999999999999999999999999998 7776654
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.97 E-value=1e-10 Score=71.43 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=63.8
Q ss_pred ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
..+..|.+.+ +++.++++.+++.+...++..++.++.|+++||+|||+++..+.....++.....++++++.+
T Consensus 19 ~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (375)
T 2gfp_A 19 YIPAIADMAR---DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVL 91 (375)
T ss_dssp HHHHHHHHHT---TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3455566666 889999999999999999999999999999999999999999999999999888888776543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.86 E-value=4.6e-09 Score=66.05 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=58.3
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~a~~~~~l 83 (87)
+++.++.+.+++.+...++..+++++.|+++|| +|||+++..+.++..++.++.+++++++.+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASAL 111 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 589999999999999999999999999999999 899999999999999999999988877554
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.65 E-value=2.2e-08 Score=63.46 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=54.6
Q ss_pred cccchhHHHHHHhhHhhhhhhhhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhc-cccc
Q psy15540 24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTV-GRKNTMLLLAVPTLVGWGLIIWSQ-SVSR 82 (87)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~a~-~~~~ 82 (87)
.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++..+++ +++.
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQG 111 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 8999999999999999999999999999999 999999999999999998888887 6554
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.49 E-value=5.3e-08 Score=60.58 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=48.0
Q ss_pred ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHH
Q psy15540 10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLV 69 (87)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 69 (87)
+..|.... ++++.++.+.+++.+...++..+++++.|+++||+|||+++..+..+..+
T Consensus 28 ~~~~~~l~--~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 28 PFFPIWLH--DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV 85 (417)
T ss_dssp TTHHHHHH--TTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTS
T ss_pred HHHHHHHH--HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 44554333 16789999999999999999999999999999999999999887766543
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.04 E-value=6.4e-06 Score=50.92 Aligned_cols=60 Identities=7% Similarity=-0.086 Sum_probs=52.4
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~ 80 (87)
.++.++.+.++..+...++..++.++.+++.||+|||+.+..+..+..++.+...+.++.
T Consensus 289 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (438)
T 3o7q_A 289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH 348 (438)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc
Confidence 458889999999999999999999999999999999999999888888877777766554
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.61 E-value=6.2e-05 Score=46.80 Aligned_cols=54 Identities=15% Similarity=0.060 Sum_probs=40.6
Q ss_pred cchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540 26 ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS 79 (87)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~ 79 (87)
....+...+...++..++.+..++++||+|||+.+..+.....+......+.++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~ 311 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS 311 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344566667777778888999999999999999988877777666555554444
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.44 E-value=0.00019 Score=44.41 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=46.5
Q ss_pred CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh--chhHHHHHHHHHHH-HHHHHHHHh
Q psy15540 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV--GRKNTMLLLAVPTL-VGWGLIIWS 77 (87)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~~a 77 (87)
.++.++.+.+++.+...++..++.++.+++.||+ |||+.+..+..+.. ++.....+.
T Consensus 282 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (451)
T 1pw4_A 282 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN 341 (451)
T ss_dssp BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence 4788899999999999999999999999999999 99998887776655 444444433
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.22 E-value=0.00052 Score=43.07 Aligned_cols=54 Identities=13% Similarity=-0.003 Sum_probs=40.4
Q ss_pred CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII 75 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 75 (87)
.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHH
Confidence 344455555666667778888899999999999999998888777666555443
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=95.25 E-value=0.0069 Score=38.00 Aligned_cols=55 Identities=11% Similarity=-0.020 Sum_probs=35.6
Q ss_pred CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHH-----HHHHHHHHHHHHHHH
Q psy15540 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML-----LLAVPTLVGWGLIIW 76 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-----~~~~~~~~~~~~~~~ 76 (87)
.+.+..+.++..+...++..++.++.+++.||+|||+... .+..+..++..+...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
T 4aps_A 314 VDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI 373 (491)
T ss_dssp CCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH
T ss_pred hccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3444456677777777888888999999999999986544 455554444444333
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=93.19 E-value=0.034 Score=33.65 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=32.4
Q ss_pred CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchh
Q psy15540 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK 57 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 57 (87)
.+.++.+.+.+.+...++..++.+..+++.||.+||
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888899999999999999999999999999884
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=79.48 E-value=1.7 Score=27.48 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=33.5
Q ss_pred HHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy15540 30 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGL 73 (87)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 73 (87)
++......++..+++++.+.+.|..|-|..+.+..+...+..+.
T Consensus 151 ~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 151 DMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 33666778899999999999999999998887766665544433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=74.14 E-value=1.2 Score=16.37 Aligned_cols=12 Identities=42% Similarity=0.819 Sum_probs=9.9
Q ss_pred hhhhhhhhchhH
Q psy15540 47 VGNLVDTVGRKN 58 (87)
Q Consensus 47 ~g~l~d~~grr~ 58 (87)
+|.+..++|||.
T Consensus 3 fgklikkfgrka 14 (26)
T 2g9p_A 3 FGKLIKKFGRKA 14 (26)
T ss_dssp HHHHHHHHTSHH
T ss_pred HHHHHHHHhHHH
Confidence 577889999985
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=55.49 E-value=26 Score=20.06 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=17.4
Q ss_pred HhhHhhhhhhhhhhhhhhhhchh
Q psy15540 35 SMALGAVFGSPVVGNLVDTVGRK 57 (87)
Q Consensus 35 ~~~~~~~~~~~~~g~l~d~~grr 57 (87)
-+.++..+++.+.|++.||..++
T Consensus 101 GYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 101 GYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 35667777888899999987644
No 17
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=49.36 E-value=6.4 Score=14.77 Aligned_cols=13 Identities=15% Similarity=-0.100 Sum_probs=9.4
Q ss_pred hhhhhhhhhchhH
Q psy15540 46 VVGNLVDTVGRKN 58 (87)
Q Consensus 46 ~~g~l~d~~grr~ 58 (87)
..-+.+.|+||..
T Consensus 3 ~~~~~A~rYGReL 15 (27)
T 2bzw_B 3 PNLWAAQRYGREL 15 (27)
T ss_dssp GGGHHHHHHHHHH
T ss_pred hhHHHHHHHhHHH
Confidence 3457788999864
No 18
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=46.08 E-value=2.7 Score=15.95 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=7.9
Q ss_pred hhhhhchhHHH
Q psy15540 50 LVDTVGRKNTM 60 (87)
Q Consensus 50 l~d~~grr~~~ 60 (87)
-++|-|||..+
T Consensus 8 ~~~RtGRRNAl 18 (26)
T 1cmk_I 8 ASGRTGRRNAI 18 (26)
T ss_pred hcCcccccccc
Confidence 36888888754
No 19
>2jpj_A Bacteriocin lactococcin-G subunit alpha; peptide, anti-microbial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpl_A
Probab=40.32 E-value=21 Score=14.44 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=14.9
Q ss_pred HhhHhhhhhhhhhhhhhhhhchhH
Q psy15540 35 SMALGAVFGSPVVGNLVDTVGRKN 58 (87)
Q Consensus 35 ~~~~~~~~~~~~~g~l~d~~grr~ 58 (87)
.+.++-..|.+---.-+||++||+
T Consensus 14 aywv~k~lgnmsdvnqa~rinrkk 37 (39)
T 2jpj_A 14 AYWVGKALGNLSDVNQASRINRKK 37 (39)
T ss_dssp HHHHHHHHTSCSHHHHHHHHHGGG
T ss_pred HHHHHHHhcchhhhhHHHHhhhhc
Confidence 445555555555555678888875
Done!