RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15540
(87 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 36.9 bits (86), Expect = 4e-04
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77
I S ++G + GS G L D GRK ++L+ V ++G L ++
Sbjct: 46 VLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFA 96
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 31.6 bits (72), Expect = 0.031
Identities = 12/57 (21%), Positives = 32/57 (56%)
Query: 24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80
++ +++ + ++ +LG P+ G L D GR+ +L+ + +G L++++ S+
Sbjct: 29 ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSL 85
Score = 25.8 bits (57), Expect = 2.6
Identities = 21/76 (27%), Positives = 29/76 (38%)
Query: 1 MGTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
G G PA LIA +P L + + LGA G + G L G +
Sbjct: 95 QGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154
Query: 61 LLLAVPTLVGWGLIIW 76
L+LA+ L+ L
Sbjct: 155 LILAILALLAAVLAAL 170
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so
using the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and
may be the result of a gene duplication/fusion event.
Based on kinetic studies and the structures of a few
bacterial superfamily members, GlpT
(glycerol-3-phosphate transporter), LacY (lactose
permease), and EmrD (multidrug transporter), MFS
proteins are thought to function through a single
substrate binding site, alternating-access mechanism
involving a rocker-switch type of movement. Bacterial
members function primarily for nutrient uptake, and as
drug-efflux pumps to confer antibiotic resistance. Some
MFS proteins have medical significance in humans such
as the glucose transporter Glut4, which is impaired in
type II diabetes, and glucose-6-phosphate transporter
(G6PT), which causes glycogen storage disease when
mutated.
Length = 352
Score = 30.7 bits (70), Expect = 0.048
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80
++ S I S+ +LG GS + G L D GR+ +LL + +G L+ ++ S+
Sbjct: 29 LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSL 87
Score = 25.0 bits (55), Expect = 5.5
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 6 GWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV 65
G PA LIA +P L + LGA+ G + G L +++G + L+LA+
Sbjct: 102 GALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI 161
Query: 66 PTLVGWGLIIW 76
L+ L+++
Sbjct: 162 LGLLLALLLLF 172
>gnl|CDD|182109 PRK09848, PRK09848, glucuronide transporter; Provisional.
Length = 448
Score = 29.0 bits (65), Expect = 0.27
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 30 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS 81
+ +G V +P+V +V +G+KNT L+ A+ G+ L W S
Sbjct: 267 VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWS 318
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 28.3 bits (64), Expect = 0.40
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 30 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76
S + + A+ G+P+ L G+K T LL + +G L+ +
Sbjct: 260 SVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFF 306
>gnl|CDD|236549 PRK09528, lacY, galactoside permease; Reviewed.
Length = 420
Score = 27.9 bits (63), Expect = 0.56
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 38 LGAVFGSPVVGNLVDTVGRKNTMLLLAV 65
LGAVF S + GNL D++G + T L+L
Sbjct: 363 LGAVFLSTLAGNLYDSIGFQGTYLILGG 390
>gnl|CDD|226823 COG4388, COG4388, Mu-like prophage I protein [General function
prediction only].
Length = 357
Score = 27.9 bits (62), Expect = 0.59
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 7 WTSPAGDRLIAGEYPF--PVTESDLSFIGSSMALGAVFGSP 45
WT A D + +GEY + PV E D + + A+ P
Sbjct: 108 WTPKAKDMIDSGEYRYLSPVFEYDTLGNVRELRMAALTNDP 148
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 27.6 bits (61), Expect = 0.74
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 15 LIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL 62
L + E + +S +G + LG + G+ G L D +GRK +L+
Sbjct: 190 LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI 237
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter;
Provisional.
Length = 426
Score = 27.6 bits (61), Expect = 0.77
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGL 73
+T+ + +F+ ++ +G FG + G L D GRK M+ V VG GL
Sbjct: 50 LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGL 99
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 26.9 bits (60), Expect = 1.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 34 SSMALGAVFGSPVVGNLVDTVGRKNTMLL 62
S +G + GS V G L D GRK +LL
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLL 162
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 26.9 bits (60), Expect = 1.1
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT 67
PA + + S + S +G G+ G L D GRK ++L++A+
Sbjct: 52 ALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLF 111
Query: 68 LVGWGLIIWS 77
++G L+ +
Sbjct: 112 VIGAILMGLA 121
>gnl|CDD|220585 pfam10123, Mu-like_Pro, Mu-like prophage I protein. Members of
this family of proteins comprise various viral Mu-like
prophage I proteins.
Length = 326
Score = 27.0 bits (60), Expect = 1.1
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 7 WTSPAGDRLIAGEYPF--PV 24
WT+ A + + A EY + PV
Sbjct: 84 WTARAREYIAAKEYRYLSPV 103
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 26.1 bits (58), Expect = 2.6
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 49 NLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH 83
N V +GR T AVPT G IW+ + RH
Sbjct: 142 NTV-CIGR--THGQHAVPTTYGMRFAIWASEIQRH 173
>gnl|CDD|239343 cd03045, GST_N_Delta_Epsilon, GST_N family, Class Delta and
Epsilon subfamily; GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. The class Delta and
Epsilon subfamily is made up primarily of insect GSTs,
which play major roles in insecticide resistance by
facilitating reductive dehydrochlorination of
insecticides or conjugating them with GSH to produce
water-soluble metabolites that are easily excreted.
They are also implicated in protection against cellular
damage by oxidative stress.
Length = 74
Score = 25.3 bits (56), Expect = 2.6
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 65 VPTLVGWGLIIWSQSVSRH 83
VPTLV G ++W S
Sbjct: 52 VPTLVDNGFVLWE---SHA 67
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 25.8 bits (57), Expect = 3.2
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 6 GWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV 65
P ++A +P + +S S+ LG + G P+VG ++ + ++ V
Sbjct: 97 APFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGV 156
Query: 66 PTLVGWGLII 75
++ WG++
Sbjct: 157 LGII-WGVLW 165
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 25.8 bits (57), Expect = 3.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL 62
+ + L F+ S+ +G FG+ G L D +GR+ +L
Sbjct: 47 WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLW 87
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 25.8 bits (57), Expect = 3.7
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV 65
S L F +S +G + G + G + GR++++ + AV
Sbjct: 49 SESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAV 93
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 25.5 bits (56), Expect = 4.3
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 45 PVVGNLVDTVGRKNTML-------LLAVPTL 68
P++G L D +GR+ +ML L VP L
Sbjct: 297 PLIGALSDKIGRRTSMLCFGSLAALFTVPIL 327
>gnl|CDD|215462 PLN02857, PLN02857, octaprenyl-diphosphate synthase.
Length = 416
Score = 25.2 bits (55), Expect = 5.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 49 NLVDTVGRKNTMLLLAVPTLVGWG 72
NL VG +N +L+ A + G G
Sbjct: 111 NLQSIVGAENPVLMSAAEQIFGAG 134
>gnl|CDD|197308 cd09074, INPP5c, Catalytic domain of inositol polyphosphate
5-phosphatases. Inositol polyphosphate 5-phosphatases
(5-phosphatases) are signal-modifying enzymes, which
hydrolyze the 5-phosphate from the inositol ring of
specific 5-position phosphorylated phosphoinositides
(PIs) and inositol phosphates (IPs), such as PI(4,5)P2,
PI(3,4,5)P3, PI(3,5)P2, I(1,4,5)P3, and I(1,3,4,5)P4.
These enzymes are Mg2+-dependent, and belong to the
large EEP (exonuclease/endonuclease/phosphatase)
superfamily that contains functionally diverse enzymes
that share a common catalytic mechanism of cleaving
phosphodiester bonds. In addition to this INPP5c
domain, 5-phosphatases often contain additional domains
and motifs, such as the SH2 domain, the Sac-1 domain,
the proline-rich domain (PRD), CAAX, RhoGAP
(RhoGTPase-activating protein), and SKICH [SKIP
(skeletal muscle- and kidney-enriched inositol
phosphatase) carboxyl homology] domains, that are
important for protein-protein interactions and/or for
the subcellular localization of these enzymes.
5-phosphatases incorporate into large signaling
complexes, and regulate diverse cellular processes
including postsynaptic vesicular trafficking, insulin
signaling, cell growth and survival, and endocytosis.
Loss or gain of function of 5-phosphatases is
implicated in certain human diseases. This family also
contains a functionally unrelated nitric oxide
transport protein, Cimex lectularius (bedbug)
nitrophorin, which catalyzes a heme-assisted
S-nitrosation of a proximal thiolate; the heme however
binds at a site distinct from the active site of the
5-phosphatases.
Length = 299
Score = 25.0 bits (55), Expect = 6.1
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 7 WTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP 66
W SP G Y V E D+S G + V N+ + + K +LL
Sbjct: 23 WLSPKGTEA-PDIYAVGVQEVDMSVQGFVGNDDSAKAREWVDNIQEALNEKENYVLLGSA 81
Query: 67 TLVGWGLIIW 76
LVG L ++
Sbjct: 82 QLVGIFLFVF 91
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 24.5 bits (54), Expect = 7.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 37 ALGAVFGSPVVGNLVDTVGRKNTMLLLAV 65
ALG + SP+ G L D GRK +L+
Sbjct: 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLF 36
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 24.6 bits (54), Expect = 7.4
Identities = 8/53 (15%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI 74
++++DL + SS ++ V+G++ D + + + L+ ++
Sbjct: 25 IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI----GLILCAIV 73
>gnl|CDD|111933 pfam03092, BT1, BT1 family. Members of this family are
transmembrane proteins. Several are Leishmania putative
proteins that are thought to be pteridine transporters.
One such protein, previously termed (and is still
annotated as) ORFG, was shown to encode a biopterin
transport protein using null mutants, thus being
subsequently renamed BT1. The significant similarity of
ORFG/BT1 to Trypanosoma brucei ESAG10 (a putative
transmembrane protein and another member of this family)
was previously noted. This family also contains five
putative Arabidopsis thaliana proteins of unknown
function. In addition, it also contains two predicted
prokaryotic proteins (from the cyanobacteria
Synechocystis and Synechococcus).
Length = 425
Score = 24.6 bits (54), Expect = 7.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 30 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV 65
S+I A+G + GS + G L+DT + + L+ A
Sbjct: 127 SWIWGCSAVGGIIGSVLSGPLLDTFKPQISFLVTAA 162
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 24.6 bits (54), Expect = 8.1
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS 81
F +T + S I + G S G L+ +G K ++L + VG + W + S
Sbjct: 43 FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVG-AALFWPAASS 101
Query: 82 R 82
+
Sbjct: 102 K 102
>gnl|CDD|213970 TIGR04357, CofD_rel_GAK, CofD-related protein, GAK system.
Members of this family are distantly related to CofD,
the enzyme LPPG:FO 2-phospho-L-lactate transferase,
involved in coenzyme F420 biosynthesis. This family
appears to belong to a biosynthesis cassette of unknown
function.
Length = 368
Score = 24.5 bits (54), Expect = 9.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 33 GSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVG 70
GSS L F P VG+L +N ++ LA T++G
Sbjct: 38 GSSAVLRRAFAMPAVGDL------RNRLMALADRTVLG 69
>gnl|CDD|211613 TIGR00882, 2A0105, oligosaccharide:H+ symporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 396
Score = 24.3 bits (53), Expect = 9.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 38 LGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL 68
L +F S + GN+ D++G + L+L L
Sbjct: 355 LAMIFLSTLAGNMYDSIGFQGAYLVLGCIVL 385
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.430
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,487,437
Number of extensions: 370490
Number of successful extensions: 488
Number of sequences better than 10.0: 1
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 63
Length of query: 87
Length of database: 10,937,602
Length adjustment: 55
Effective length of query: 32
Effective length of database: 8,498,132
Effective search space: 271940224
Effective search space used: 271940224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)