RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15540
         (87 letters)



>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
           major facilitator superfamily, secondary active membrane
           transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
          Length = 451

 Score = 26.2 bits (58), Expect = 1.5
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 9/57 (15%)

Query: 21  PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77
               +  DL F  S +++   F   ++G++ D    +  +           GLI+ +
Sbjct: 56  EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL---------PAGLILAA 103


>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics,
          joint center for structural genomics; HET: MSE; 1.55A
          {Pectobacterium atrosepticum SCRI1043}
          Length = 148

 Score = 25.0 bits (54), Expect = 3.7
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV 65
          + E+D   +   +A   VF +P   +     G+   M++L  
Sbjct: 33 IAEADWERLPDLLAEDVVFSNPSTFDPYH--GKGPLMVILPA 72


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0586    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,322,565
Number of extensions: 65283
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 8
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)