RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15540
         (87 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 31.6 bits (70), Expect = 0.007
 Identities = 7/62 (11%), Positives = 21/62 (33%)

Query: 22  FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS 81
              +  DL F  S +++   F   ++G++ D    +  +    +        + +    +
Sbjct: 54  QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 113

Query: 82  RH 83
             
Sbjct: 114 SS 115


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
          562]}
          Length = 417

 Score = 31.3 bits (69), Expect = 0.010
 Identities = 12/55 (21%), Positives = 27/55 (49%)

Query: 22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76
            +++SD   I ++++L ++   P+ G L D +G +  +L +    LV +     
Sbjct: 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFI 92



 Score = 25.5 bits (54), Expect = 0.87
 Identities = 9/46 (19%), Positives = 21/46 (45%)

Query: 31  FIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 76
                  L  +F S + GN+ +++G +   L+L +  L    + ++
Sbjct: 353 CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398


>d1ihma_ b.121.4.3 (A:) Calicivirus capsid protein {Norwalk virus
           [TaxId: 11983]}
          Length = 492

 Score = 23.6 bits (51), Expect = 3.7
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 5/91 (5%)

Query: 2   GTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK---- 57
           GT++  T   G      E P P+   DL      + +     S      VDT        
Sbjct: 268 GTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHINMTQFGHSSQTQYDVDTTPDTFVPH 327

Query: 58  -NTMLLLAVPTLVGWGLIIWSQSVSRHGSIH 87
             ++    + +    G++ W    S      
Sbjct: 328 LGSIQANGIGSGNYVGVLSWISPPSHPSGSQ 358


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 311,674
Number of extensions: 11282
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 6
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)