BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15542
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative
Nicotinate Phosphoribosyltransferase, New York
Structural Genomics Consortium
Length = 494
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Query: 88 FAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLVEING---- 143
F E +I ASND++E TIL+L Q +ID +G+GT L+T QPALG V+KLV I G
Sbjct: 284 FTEAKIYASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQ 343
Query: 144 -MPRIKLSQDVGKVAV 158
IKLS + KV
Sbjct: 344 MKDTIKLSSNAEKVTT 359
>pdb|1VLP|A Chain A, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|B Chain B, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|C Chain C, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|D Chain D, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
Length = 441
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 85 IPWFAELQIVASNDINEETILSLN---EQGHRIDCFGIGTHLVTCQRQPA--------LG 133
+P F+++ I S+ +N E ++ + ++ + FGIGT+ R+ + L
Sbjct: 329 LPKFSKI-ICYSDSLNVEKAITYSHAAKENGXLATFGIGTNFTNDFRKKSEPQVKSEPLN 387
Query: 134 CVYKLVEINGMPRIKLSQDVGK 155
V KL+E+NG IK+S ++GK
Sbjct: 388 IVIKLLEVNGNHAIKISDNLGK 409
>pdb|3OS4|A Chain A, The Crystal Structure Of Nicotinate
Phosphoribosyltransferase From Yersinia Pestis
pdb|3OS4|B Chain B, The Crystal Structure Of Nicotinate
Phosphoribosyltransferase From Yersinia Pestis
Length = 407
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 93 IVASNDINEETILSLNEQGH-RID-CFGIGTHLVTCQ--RQPALGCVYKLVEINGMPRIK 148
+V S++++ E L L + RI FGIGT L TC L V KLVE N P K
Sbjct: 311 LVFSDNLDLEKALFLYRHFYQRIKLVFGIGTRL-TCDIPDVKPLNIVIKLVECNDKPVAK 369
Query: 149 LSQDVGKVAVSD 160
LS GK D
Sbjct: 370 LSDSPGKTICQD 381
>pdb|1YIR|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
pdb|1YIR|B Chain B, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
pdb|1YIR|C Chain C, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
pdb|1YIR|D Chain D, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
Length = 408
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 110 QGHRIDCFGIGTHLVTCQR---QPALGCVYKLVEINGMPRIKLSQDVGKVAVSDHLYSFI 166
QG FGIGTH TC +P + V K+ NG P K+S GK D FI
Sbjct: 335 QGRINVSFGIGTHF-TCDLPGVEP-MNIVVKMSACNGHPVAKISDTPGKAQCRDP--DFI 390
Query: 167 HEL 169
H L
Sbjct: 391 HYL 393
>pdb|1Y3H|A Chain A, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Mycobacterium Tuberculosis
pdb|1Y3H|B Chain B, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Mycobacterium Tuberculosis
Length = 307
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 89 AELQIVASNDINEETILSLN---EQGHRIDCFGIGTHLVTCQRQPALGCVYKLVEINGMP 145
A L+ V + D E L+L+ QG RI G + V+ ++ P LG + +VEI+G P
Sbjct: 123 AVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEIDGRP 182
>pdb|1U0R|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0T|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1Y3I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad
Kinase-Nad Complex
pdb|1Y3I|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad
Kinase-Nad Complex
Length = 307
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 89 AELQIVASNDINEETILSLN---EQGHRIDCFGIGTHLVTCQRQPALGCVYKLVEINGMP 145
A L+ V + D E L+L+ QG RI G + V+ ++ P LG + +VEI+G P
Sbjct: 123 AVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEIDGRP 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,824,884
Number of Sequences: 62578
Number of extensions: 182512
Number of successful extensions: 365
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 6
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)