Query psy15542
Match_columns 180
No_of_seqs 205 out of 1130
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 23:58:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02885 nicotinate phosphorib 100.0 5E-45 1.1E-49 340.6 15.2 165 3-167 211-427 (545)
2 TIGR01513 NAPRTase_put putativ 100.0 3E-34 6.5E-39 262.9 11.4 120 48-167 196-356 (443)
3 cd01401 PncB_like Nicotinate p 100.0 4.3E-33 9.4E-38 251.0 9.7 103 55-157 233-377 (377)
4 PRK12484 nicotinate phosphorib 100.0 7.7E-33 1.7E-37 253.6 11.2 118 48-167 199-356 (443)
5 PRK09243 nicotinate phosphorib 100.0 1.1E-32 2.4E-37 253.6 11.2 121 48-168 205-370 (464)
6 PRK05321 nicotinate phosphorib 100.0 1.2E-32 2.6E-37 249.7 10.1 106 55-160 236-380 (400)
7 TIGR01514 NAPRTase nicotinate 100.0 3.8E-32 8.2E-37 246.1 11.1 112 49-160 223-380 (394)
8 COG1488 PncB Nicotinic acid ph 99.9 2.1E-24 4.5E-29 196.2 9.9 108 51-158 215-361 (405)
9 cd01570 NAPRTase_A Nicotinate 99.9 2.6E-24 5.7E-29 190.3 7.6 92 48-139 196-327 (327)
10 PHA02594 nadV nicotinamide pho 99.9 6.5E-23 1.4E-27 189.4 12.2 118 48-165 238-420 (470)
11 PRK09198 putative nicotinate p 99.9 3E-22 6.5E-27 184.8 11.9 116 48-165 231-417 (463)
12 PF04095 NAPRTase: Nicotinate 99.9 1.2E-22 2.7E-27 173.0 4.0 107 50-158 57-228 (245)
13 PRK07188 nicotinate phosphorib 99.8 2.3E-21 4.9E-26 173.8 9.6 100 50-153 182-339 (352)
14 cd01569 PBEF_like pre-B-cell c 99.8 6.8E-21 1.5E-25 173.5 8.2 102 48-149 230-395 (407)
15 KOG2511|consensus 99.8 1.8E-19 3.8E-24 161.2 4.6 129 3-160 206-358 (420)
16 cd01567 NAPRTase_PncB Nicotina 99.7 3.3E-18 7.2E-23 151.1 6.7 89 49-137 208-343 (343)
17 PRK08662 nicotinate phosphorib 99.7 5.7E-17 1.2E-21 144.8 10.8 105 50-160 180-325 (343)
18 cd01571 NAPRTase_B Nicotinate 99.6 6.7E-15 1.5E-19 129.2 9.7 97 50-151 163-301 (302)
19 cd00516 PRTase_typeII Phosphor 99.1 1.4E-10 3.1E-15 99.2 8.0 78 55-137 167-281 (281)
20 PF01729 QRPTase_C: Quinolinat 97.3 0.00019 4.1E-09 58.7 3.0 45 88-137 125-169 (169)
21 cd01573 modD_like ModD; Quinol 95.4 0.066 1.4E-06 46.8 7.5 45 88-138 228-272 (272)
22 PRK08385 nicotinate-nucleotide 95.4 0.063 1.4E-06 47.4 7.4 64 72-140 205-276 (278)
23 PRK07896 nicotinate-nucleotide 95.1 0.051 1.1E-06 48.3 5.8 45 88-137 244-288 (289)
24 PRK05848 nicotinate-nucleotide 94.9 0.12 2.5E-06 45.6 7.4 62 72-138 205-272 (273)
25 PRK09016 quinolinate phosphori 92.4 0.47 1E-05 42.4 6.9 45 89-138 251-295 (296)
26 PRK07428 nicotinate-nucleotide 91.9 0.58 1.3E-05 41.5 6.8 63 72-139 219-287 (288)
27 PRK06106 nicotinate-nucleotide 91.2 0.53 1.1E-05 41.7 5.9 43 90-137 238-280 (281)
28 TIGR00078 nadC nicotinate-nucl 90.5 0.99 2.2E-05 39.4 6.9 42 91-137 223-264 (265)
29 cd01568 QPRTase_NadC Quinolina 89.5 1.2 2.5E-05 38.8 6.5 59 72-135 204-267 (269)
30 PRK05742 nicotinate-nucleotide 89.1 0.69 1.5E-05 40.8 4.8 63 70-138 211-276 (277)
31 TIGR01182 eda Entner-Doudoroff 88.3 0.7 1.5E-05 39.1 4.1 38 86-125 144-181 (204)
32 cd04726 KGPDC_HPS 3-Keto-L-gul 88.2 0.74 1.6E-05 37.0 4.1 37 89-127 157-193 (202)
33 PRK06552 keto-hydroxyglutarate 87.9 0.69 1.5E-05 39.1 3.9 38 86-125 151-188 (213)
34 cd00452 KDPG_aldolase KDPG and 86.2 1.1 2.5E-05 36.3 4.2 38 86-125 139-176 (190)
35 PRK06096 molybdenum transport 84.8 5.9 0.00013 35.2 8.2 63 72-141 212-281 (284)
36 PRK05718 keto-hydroxyglutarate 84.6 4.5 9.8E-05 34.2 7.2 37 87-125 152-188 (212)
37 PRK07114 keto-hydroxyglutarate 84.3 1.1 2.3E-05 38.4 3.3 38 86-125 154-193 (222)
38 cd00564 TMP_TenI Thiamine mono 83.5 1.6 3.4E-05 34.2 3.7 36 89-126 149-184 (196)
39 PRK07455 keto-hydroxyglutarate 83.3 1.7 3.7E-05 35.7 4.0 37 87-125 149-185 (187)
40 PF01081 Aldolase: KDPG and KH 82.2 1.1 2.4E-05 37.7 2.5 40 85-126 143-182 (196)
41 TIGR00693 thiE thiamine-phosph 81.9 2 4.4E-05 34.4 3.9 37 89-127 151-187 (196)
42 cd01572 QPRTase Quinolinate ph 81.7 1.9 4.2E-05 37.6 3.9 42 90-136 226-267 (268)
43 TIGR03128 RuMP_HxlA 3-hexulose 81.5 2.5 5.5E-05 34.2 4.4 35 90-126 158-192 (206)
44 PRK00043 thiE thiamine-phospha 79.8 2.6 5.6E-05 33.9 3.8 36 89-126 159-194 (212)
45 PRK07695 transcriptional regul 79.1 2.5 5.4E-05 34.4 3.6 35 90-126 149-183 (201)
46 PRK09140 2-dehydro-3-deoxy-6-p 77.3 3.3 7.1E-05 34.7 3.9 37 87-125 147-184 (206)
47 COG0800 Eda 2-keto-3-deoxy-6-p 77.2 3.4 7.4E-05 35.4 4.0 38 86-125 149-186 (211)
48 TIGR00640 acid_CoA_mut_C methy 76.8 7.9 0.00017 30.3 5.6 67 57-125 43-118 (132)
49 cd04729 NanE N-acetylmannosami 76.7 2.8 6.1E-05 34.6 3.3 35 90-126 177-212 (219)
50 PRK08072 nicotinate-nucleotide 76.6 5.7 0.00012 35.0 5.3 73 57-138 199-275 (277)
51 PRK06978 nicotinate-nucleotide 74.7 8 0.00017 34.6 5.8 63 72-140 228-294 (294)
52 COG0157 NadC Nicotinate-nucleo 74.5 17 0.00036 32.6 7.7 75 57-140 198-279 (280)
53 KOG2511|consensus 73.9 1.5 3.2E-05 40.7 0.9 41 130-170 356-398 (420)
54 PRK01130 N-acetylmannosamine-6 70.2 5.5 0.00012 32.8 3.5 34 90-125 173-207 (221)
55 PRK06015 keto-hydroxyglutarate 69.6 6.1 0.00013 33.3 3.7 38 86-125 140-177 (201)
56 PLN02716 nicotinate-nucleotide 68.5 33 0.00071 31.0 8.2 62 71-138 231-305 (308)
57 PRK06543 nicotinate-nucleotide 68.1 26 0.00057 31.1 7.5 58 72-138 216-280 (281)
58 PRK00278 trpC indole-3-glycero 65.9 26 0.00056 30.2 6.9 34 93-128 215-248 (260)
59 TIGR01163 rpe ribulose-phospha 63.8 11 0.00024 30.2 4.0 34 91-126 166-199 (210)
60 cd00429 RPE Ribulose-5-phospha 61.6 14 0.00029 29.5 4.1 35 91-127 167-201 (211)
61 PLN02334 ribulose-phosphate 3- 61.1 13 0.00027 31.1 4.0 35 90-126 174-208 (229)
62 cd04722 TIM_phosphate_binding 61.0 10 0.00022 28.8 3.2 31 89-121 169-200 (200)
63 cd02071 MM_CoA_mut_B12_BD meth 60.4 34 0.00074 25.8 6.0 41 82-124 73-114 (122)
64 cd01469 vWA_integrins_alpha_su 60.3 20 0.00044 28.4 4.9 38 86-123 101-144 (177)
65 PRK05581 ribulose-phosphate 3- 58.9 16 0.00034 29.6 4.1 35 91-127 171-205 (220)
66 cd01473 vWA_CTRP CTRP for CS 58.5 22 0.00047 29.0 4.9 35 88-122 108-150 (192)
67 cd02072 Glm_B12_BD B12 binding 58.2 39 0.00085 26.6 6.1 68 57-125 39-121 (128)
68 PRK06559 nicotinate-nucleotide 57.3 30 0.00065 30.9 5.9 58 72-138 220-284 (290)
69 COG0135 TrpF Phosphoribosylant 55.1 44 0.00095 28.4 6.3 43 71-113 124-177 (208)
70 PRK08883 ribulose-phosphate 3- 53.9 20 0.00043 30.4 4.0 34 90-125 167-200 (220)
71 PRK13307 bifunctional formalde 51.6 18 0.00038 33.6 3.6 35 90-126 330-364 (391)
72 COG0269 SgbH 3-hexulose-6-phos 51.3 77 0.0017 27.4 7.2 36 91-128 165-200 (217)
73 cd04730 NPD_like 2-Nitropropan 51.1 19 0.00042 29.4 3.5 41 90-132 156-197 (236)
74 PRK02261 methylaspartate mutas 49.9 62 0.0013 25.3 6.0 66 57-124 43-124 (137)
75 TIGR01334 modD putative molybd 49.7 55 0.0012 29.0 6.3 57 72-135 211-274 (277)
76 PRK02240 GTP cyclohydrolase II 49.4 25 0.00054 31.1 4.0 35 87-122 53-91 (254)
77 cd00405 PRAI Phosphoribosylant 48.4 77 0.0017 25.7 6.6 38 90-128 152-189 (203)
78 cd01477 vWA_F09G8-8_type VWA F 46.6 24 0.00052 29.0 3.3 37 86-122 129-172 (193)
79 cd00331 IGPS Indole-3-glycerol 44.4 29 0.00063 28.4 3.5 37 89-127 171-208 (217)
80 PF07908 D-aminoacyl_C: D-amin 44.0 25 0.00054 23.0 2.5 32 127-164 13-46 (48)
81 PTZ00441 sporozoite surface pr 42.1 44 0.00096 32.8 4.8 36 87-122 148-189 (576)
82 COG0440 IlvH Acetolactate synt 40.2 24 0.00052 29.2 2.4 43 75-119 32-75 (163)
83 PRK08745 ribulose-phosphate 3- 40.0 52 0.0011 28.1 4.5 34 90-125 171-204 (223)
84 PTZ00170 D-ribulose-5-phosphat 39.7 45 0.00096 28.1 4.0 35 90-126 173-207 (228)
85 PRK07028 bifunctional hexulose 39.3 40 0.00087 30.9 3.9 35 90-126 162-196 (430)
86 cd01454 vWA_norD_type norD typ 39.2 19 0.00041 28.1 1.6 37 89-125 104-156 (174)
87 COG3693 XynA Beta-1,4-xylanase 39.0 20 0.00043 33.0 1.8 24 103-126 209-232 (345)
88 COG0134 TrpC Indole-3-glycerol 38.9 1.1E+02 0.0024 27.0 6.4 34 93-128 210-244 (254)
89 cd01471 vWA_micronemal_protein 38.6 65 0.0014 25.2 4.6 37 87-123 107-149 (186)
90 cd00381 IMPDH IMPDH: The catal 38.6 72 0.0016 28.4 5.3 40 90-131 197-237 (325)
91 cd04740 DHOD_1B_like Dihydroor 38.2 39 0.00084 29.0 3.5 35 90-126 231-266 (296)
92 cd01464 vWA_subfamily VWA subf 37.8 50 0.0011 25.8 3.8 35 89-123 108-149 (176)
93 cd01480 vWA_collagen_alpha_1-V 35.5 79 0.0017 25.1 4.7 36 86-121 107-150 (186)
94 cd01482 vWA_collagen_alphaI-XI 34.9 83 0.0018 24.3 4.6 35 87-121 102-140 (164)
95 KOG0077|consensus 34.9 26 0.00057 29.7 1.9 28 54-81 72-101 (193)
96 smart00500 SFM Splicing Factor 34.8 31 0.00068 22.6 1.8 21 100-120 3-23 (44)
97 cd02801 DUS_like_FMN Dihydrour 34.6 53 0.0011 26.7 3.6 39 88-127 181-220 (231)
98 PRK04302 triosephosphate isome 34.4 58 0.0013 27.0 3.9 37 89-127 172-209 (223)
99 TIGR03572 WbuZ glycosyl amidat 33.2 56 0.0012 27.0 3.6 32 90-123 197-230 (232)
100 PRK02615 thiamine-phosphate py 33.0 53 0.0011 30.0 3.6 35 90-126 294-328 (347)
101 cd02810 DHOD_DHPD_FMN Dihydroo 32.9 37 0.00081 28.9 2.5 35 90-126 243-278 (289)
102 PRK13685 hypothetical protein; 32.5 62 0.0013 28.5 3.9 33 90-122 195-239 (326)
103 TIGR01303 IMP_DH_rel_1 IMP deh 32.4 29 0.00063 32.9 1.9 52 88-139 264-321 (475)
104 COG2185 Sbm Methylmalonyl-CoA 31.9 37 0.00081 27.5 2.2 71 53-125 49-128 (143)
105 cd01475 vWA_Matrilin VWA_Matri 31.8 87 0.0019 25.7 4.5 33 89-121 109-145 (224)
106 TIGR02151 IPP_isom_2 isopenten 31.7 44 0.00095 29.8 2.8 35 89-125 253-288 (333)
107 PRK07807 inosine 5-monophospha 31.5 22 0.00048 33.6 1.0 61 87-147 265-334 (479)
108 PF13519 VWA_2: von Willebrand 31.4 1.4E+02 0.0031 21.9 5.3 37 88-124 99-139 (172)
109 cd01472 vWA_collagen von Wille 31.3 71 0.0015 24.5 3.7 37 86-122 101-141 (164)
110 cd00198 vWFA Von Willebrand fa 31.2 96 0.0021 22.1 4.2 35 87-121 100-141 (161)
111 PF00977 His_biosynth: Histidi 30.9 53 0.0011 27.6 3.1 33 90-124 191-224 (229)
112 cd01456 vWA_ywmD_type VWA ywmD 30.8 98 0.0021 24.8 4.6 40 82-122 129-179 (206)
113 cd01452 VWA_26S_proteasome_sub 30.1 76 0.0016 26.4 3.8 24 102-125 127-150 (187)
114 PRK13125 trpA tryptophan synth 30.1 58 0.0012 27.6 3.2 33 91-125 186-219 (244)
115 PRK05096 guanosine 5'-monophos 29.4 39 0.00085 31.1 2.2 87 54-141 107-208 (346)
116 cd01450 vWFA_subfamily_ECM Von 29.0 68 0.0015 23.6 3.1 35 87-121 102-142 (161)
117 PF01645 Glu_synthase: Conserv 28.9 3.6E+02 0.0078 24.9 8.3 48 82-136 265-314 (368)
118 cd02933 OYE_like_FMN Old yello 28.7 60 0.0013 29.1 3.2 37 90-127 285-321 (338)
119 PF05165 GGDN: GGDN family; I 28.4 56 0.0012 28.7 2.9 35 89-124 52-90 (246)
120 cd01458 vWA_ku Ku70/Ku80 N-ter 28.4 72 0.0016 26.1 3.4 34 90-123 129-174 (218)
121 cd01465 vWA_subgroup VWA subgr 28.3 80 0.0017 23.8 3.5 30 93-122 101-140 (170)
122 PRK07259 dihydroorotate dehydr 27.6 60 0.0013 28.0 2.9 34 90-125 234-268 (301)
123 PRK05458 guanosine 5'-monophos 27.4 1.3E+02 0.0028 27.3 5.1 40 90-131 201-241 (326)
124 cd02803 OYE_like_FMN_family Ol 27.2 54 0.0012 28.4 2.6 37 90-127 281-318 (327)
125 cd01467 vWA_BatA_type VWA BatA 26.6 2.9E+02 0.0064 21.1 7.6 33 89-121 103-142 (180)
126 PRK01222 N-(5'-phosphoribosyl) 26.4 2.5E+02 0.0055 23.3 6.4 23 91-113 155-177 (210)
127 PLN02898 HMP-P kinase/thiamin- 25.6 91 0.002 29.2 3.9 38 89-126 443-481 (502)
128 PF12010 DUF3502: Domain of un 25.5 29 0.00062 27.0 0.5 65 27-91 45-118 (134)
129 cd03011 TlpA_like_ScsD_MtbDsbE 25.4 2.5E+02 0.0055 19.9 6.1 53 54-106 58-120 (123)
130 PF00218 IGPS: Indole-3-glycer 25.3 1.4E+02 0.003 26.1 4.8 36 91-128 210-246 (254)
131 cd04734 OYE_like_3_FMN Old yel 25.2 60 0.0013 29.0 2.6 38 90-128 285-323 (343)
132 PRK08091 ribulose-phosphate 3- 25.0 1E+02 0.0023 26.5 3.9 38 85-125 175-212 (228)
133 cd01476 VWA_integrin_invertebr 24.8 1.6E+02 0.0034 22.3 4.5 36 87-122 102-142 (163)
134 PRK06843 inosine 5-monophospha 24.6 1.7E+02 0.0037 27.4 5.4 40 90-131 256-296 (404)
135 cd04735 OYE_like_4_FMN Old yel 24.6 36 0.00079 30.4 1.1 37 90-128 284-321 (353)
136 TIGR00262 trpA tryptophan synt 24.3 86 0.0019 27.0 3.3 34 90-125 198-232 (256)
137 TIGR03217 4OH_2_O_val_ald 4-hy 24.0 2.5E+02 0.0053 25.2 6.2 94 29-122 114-227 (333)
138 PRK13585 1-(5-phosphoribosyl)- 23.9 98 0.0021 25.6 3.5 36 90-127 193-229 (241)
139 cd02965 HyaE HyaE family; HyaE 23.8 1.8E+02 0.0039 22.3 4.7 41 57-98 48-93 (111)
140 TIGR01949 AroFGH_arch predicte 23.8 1.1E+02 0.0023 26.0 3.7 36 90-127 192-234 (258)
141 cd02932 OYE_YqiM_FMN Old yello 23.7 76 0.0017 28.0 2.9 37 90-127 290-327 (336)
142 TIGR00735 hisF imidazoleglycer 23.6 1.5E+02 0.0033 25.0 4.7 68 57-127 33-110 (254)
143 cd01462 VWA_YIEM_type VWA YIEM 23.6 1.8E+02 0.0038 21.9 4.6 34 89-122 95-135 (152)
144 smart00633 Glyco_10 Glycosyl h 22.9 1.1E+02 0.0023 25.8 3.6 25 101-125 139-163 (254)
145 cd00311 TIM Triosephosphate is 22.8 1.1E+02 0.0024 26.3 3.7 36 88-124 197-232 (242)
146 cd01453 vWA_transcription_fact 22.0 1.2E+02 0.0026 24.4 3.6 33 90-122 109-147 (183)
147 TIGR03151 enACPred_II putative 21.9 1.3E+02 0.0027 26.7 3.9 38 90-129 161-199 (307)
148 TIGR01037 pyrD_sub1_fam dihydr 21.7 91 0.002 26.8 2.9 34 90-125 234-268 (300)
149 TIGR02129 hisA_euk phosphoribo 21.7 1E+02 0.0023 27.0 3.3 35 90-126 76-110 (253)
150 PRK00148 Maf-like protein; Rev 21.4 3.8E+02 0.0082 22.3 6.5 33 88-121 119-154 (194)
151 cd02931 ER_like_FMN Enoate red 21.3 93 0.002 28.3 3.0 38 90-128 305-343 (382)
152 KOG1509|consensus 21.1 1.1E+02 0.0024 26.4 3.2 37 86-123 137-176 (209)
153 PF01136 Peptidase_U32: Peptid 21.1 4.6E+02 0.01 21.3 7.9 80 36-121 6-94 (233)
154 cd04727 pdxS PdxS is a subunit 20.9 1.3E+02 0.0027 27.1 3.7 36 90-127 194-232 (283)
155 PRK00865 glutamate racemase; P 20.7 2.4E+02 0.0052 24.1 5.3 60 57-118 18-96 (261)
156 cd04738 DHOD_2_like Dihydrooro 20.6 72 0.0016 28.2 2.1 33 90-124 280-313 (327)
157 PRK14057 epimerase; Provisiona 20.2 1.4E+02 0.003 26.2 3.8 40 83-125 187-226 (254)
158 PRK09722 allulose-6-phosphate 20.2 1.5E+02 0.0032 25.4 3.9 38 84-124 164-202 (229)
159 TIGR01302 IMP_dehydrog inosine 20.1 42 0.00091 31.2 0.6 51 88-138 263-319 (450)
160 PF04722 Ssu72: Ssu72-like pro 20.0 1.6E+02 0.0035 25.1 4.0 32 93-124 6-39 (195)
No 1
>PLN02885 nicotinate phosphoribosyltransferase
Probab=100.00 E-value=5e-45 Score=340.60 Aligned_cols=165 Identities=50% Similarity=0.795 Sum_probs=155.3
Q ss_pred ceeeeccCccccccccccccCCCCc-chHHHHHHHHHHhhc--CccccceeeecccHHHHHHHHHHHCCCCeEEeeeecc
Q psy15542 3 SSILILSYLSSLFSQTIQDRASGQD-ADLLALSISWRNKIS--PILDVLTDEASDGELAALISYAIAFPDGFMALVDTYD 79 (180)
Q Consensus 3 ~~i~s~~~~~~~~~~~l~~~~~~~~-~d~~~~~~~~~~~~~--~~~~~~~~~~~~~E~~Af~aya~~fP~~~i~LvDTYd 79 (180)
|||+||.+++++++..++.+++... +||+...+.|+.+.+ ..++....+.+++|++||++||++||+++++|+||||
T Consensus 211 s~i~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~El~AF~aya~~~P~~~i~LvDTyd 290 (545)
T PLN02885 211 AFVSSYMGLDEIVDKTLRSADGSSVCEDFVSLVQEWLSKLQESSSLRGVFSETNQSELAAFTSYALAFPNSFLALVDTYD 290 (545)
T ss_pred HHHHhccccccccccccccccccccchhHHHHHHHHHHhhhcccccccccccCChhHHHHHHHHHHHCCCCeEEEEEccc
Confidence 7999999999999999999998654 899999999998875 4577778899999999999999999999999999999
Q ss_pred cc-----------------------------------------------ccCCCCCCceeEEEeCCCCHHHHHHHHHcCC
Q psy15542 80 VK-----------------------------------------------RYNIPWFAELQIVASNDINEETILSLNEQGH 112 (180)
Q Consensus 80 ~~-----------------------------------------------~Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~ 112 (180)
|+ +|+++|++++||+|||||||++|.+|+++|+
T Consensus 291 ~l~sg~~n~~~v~~~l~~~g~~~~GVRlDSGDl~~ls~~~r~~~~~~~~~l~~~g~~~~kIv~Sn~Lde~~i~~L~~~g~ 370 (545)
T PLN02885 291 VMKSGIPNFCAVALALNDLGYKAVGIRLDSGDLAYLSLEARKFFRTIEEELGVPGFGKMSITASNDINEETLDALNKQGH 370 (545)
T ss_pred cHHHHHHHHHHHHHHHHhcCcccCeeEECCCChHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCHHHHHHHHHcCC
Confidence 76 5678899999999999999999999999999
Q ss_pred ceeEeeeccccccCCCCCcceeEEEEeEEcCcceeeecCCCCcccCCc--ceeeeee
Q psy15542 113 RIDCFGIGTHLVTCQRQPALGCVYKLVEINGMPRIKLSQDVGKVAVSD--HLYSFIH 167 (180)
Q Consensus 113 ~id~fGIGT~Lvt~~~~p~Lg~VyKLVei~G~P~~KlS~~~~K~T~Pg--~v~r~~~ 167 (180)
+||+|||||+|+||..+|+||||||||++||+|+||+|++++|+|+|| ++||+|.
T Consensus 371 ~id~fGVGT~LvT~~~~p~l~~VyKLVe~~g~p~~KlS~~~~K~t~PG~K~vyR~~~ 427 (545)
T PLN02885 371 EIDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLSEDVEKVTIPCKKRCYRLYG 427 (545)
T ss_pred CccEEecCCccccCCCCCCCceEEEEEEECCeeeeEecCCCCCccCCcceEEEEEEc
Confidence 999999999999999999999999999999999999999999999999 8999985
No 2
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=100.00 E-value=3e-34 Score=262.87 Aligned_cols=120 Identities=38% Similarity=0.622 Sum_probs=113.4
Q ss_pred ceeeecccHHHHHHHHHHHCCCCeEEeeeecccc---------------------------------------ccCCCCC
Q psy15542 48 LTDEASDGELAALISYAIAFPDGFMALVDTYDVK---------------------------------------RYNIPWF 88 (180)
Q Consensus 48 ~~~~~~~~E~~Af~aya~~fP~~~i~LvDTYd~~---------------------------------------~Ld~~g~ 88 (180)
+++|+|++|++||++|+++||++.++|+||||+. .||..|+
T Consensus 196 s~i~~~~~e~~Af~~~~~~~p~~~i~L~DTyd~~~sg~~~~~~~~~~l~~~~~~~gVR~DSGD~~~l~~~vr~~ld~~G~ 275 (443)
T TIGR01513 196 SFVMSFDNELAAFRAYAKLYPKATVLLVDTYDTLRSGLPNAIAVAKELGEQGKVVGVRIDSGDLLYLSKQARKQLDAAGL 275 (443)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcEEEEEcCCCchhhHHHHHHHHHHHhhhcCceeEecCCCCHHHHHHHHHHHHHHcCC
Confidence 4578889999999999999999899999999964 5788899
Q ss_pred CceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEEeEEcCcceeeecCCCCcccCCc--ceeeee
Q psy15542 89 AELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLVEINGMPRIKLSQDVGKVAVSD--HLYSFI 166 (180)
Q Consensus 89 ~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKLVei~G~P~~KlS~~~~K~T~Pg--~v~r~~ 166 (180)
+++||++||||||++|++|+++|+++|+|||||+|++|.++|+||+|||||++||+|++|+|++++|.|.|| +|||++
T Consensus 276 ~~vkIi~S~gLde~~i~~l~~~g~~~d~fGvGt~L~t~~~~~~l~~v~Klv~~~G~pv~K~sd~~~K~t~pG~k~v~R~~ 355 (443)
T TIGR01513 276 TQVKIVVSNDLDENSIAALKAEGAPIDVYGVGTSLVTASDAPALGGVYKLVAYEGRPVMKLSENPEKSTLPGRKQVFRLY 355 (443)
T ss_pred CCcEEEEeCCCCHHHHHHHHHCCCceeEEecCcceeecCCCCccceEEEEEeECCeeeEecCCCCcCccCCcceEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 799986
Q ss_pred e
Q psy15542 167 H 167 (180)
Q Consensus 167 ~ 167 (180)
.
T Consensus 356 ~ 356 (443)
T TIGR01513 356 D 356 (443)
T ss_pred C
Confidence 3
No 3
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=100.00 E-value=4.3e-33 Score=251.00 Aligned_cols=103 Identities=33% Similarity=0.426 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHCCCC-eEEeeeecccc---------------------------------ccCCCCC-Ccee-EEEeCC
Q psy15542 55 GELAALISYAIAFPDG-FMALVDTYDVK---------------------------------RYNIPWF-AELQ-IVASND 98 (180)
Q Consensus 55 ~E~~Af~aya~~fP~~-~i~LvDTYd~~---------------------------------~Ld~~g~-~~vk-Iv~Sn~ 98 (180)
+|.+||++|+++||++ +|+|+|||++. .|+..|+ +++| |+||||
T Consensus 233 ~e~~A~~~w~~~y~~~l~i~L~DTy~t~~f~~~~~~~~~~~~~GvR~DSGD~~~~~~k~r~~~~~~Gi~p~~K~iv~Sd~ 312 (377)
T cd01401 233 SQKAALERWVREYGGDLGIALTDTFGTDAFLRDFDLYFAKLFDGVRHDSGDPFEWGEKAIAHYEKLGIDPKTKTLVFSDG 312 (377)
T ss_pred cHHHHHHHHHHHcCCCCeEEEEecCCCHHHHHHHHHHhcccCCEEeeCCCCHHHHHHHHHHHHHHcCCCCCCcEEEEcCC
Confidence 5999999999999987 89999999997 5677775 6777 999999
Q ss_pred CCHHHHHHHHH--cCCceeEeeeccccccCCC----CCcceeEEEEeEEcCcceeeecCCCCccc
Q psy15542 99 INEETILSLNE--QGHRIDCFGIGTHLVTCQR----QPALGCVYKLVEINGMPRIKLSQDVGKVA 157 (180)
Q Consensus 99 Lde~~i~~L~~--~g~~id~fGIGT~Lvt~~~----~p~Lg~VyKLVei~G~P~~KlS~~~~K~T 157 (180)
|||++|.+|++ +|+++|+|||||+|+|+.+ +||||+|||||++||+|++|+||+++|+|
T Consensus 313 Lde~~i~~L~~~~~g~~~~~FGIGT~L~~d~~~~~~~~pl~~V~KLv~~~g~P~~KlSd~~~K~t 377 (377)
T cd01401 313 LDVEKALELYEYFKGRIKVSFGIGTNLTNDFGNKEKSTPLNIVIKLVECNGRPVAKISDSPGKNM 377 (377)
T ss_pred CCHHHHHHHHHHHcCCcceeEecCcceecCCCcccCCCCcceEEEEEEECCcceeEecCCCccCC
Confidence 99999999999 8999999999999999887 99999999999999999999999999986
No 4
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=99.98 E-value=7.7e-33 Score=253.58 Aligned_cols=118 Identities=36% Similarity=0.499 Sum_probs=111.5
Q ss_pred ceeeecccHHHHHHHHHHHCCCCeEEeeeecccc--------------------------------------ccCCCCCC
Q psy15542 48 LTDEASDGELAALISYAIAFPDGFMALVDTYDVK--------------------------------------RYNIPWFA 89 (180)
Q Consensus 48 ~~~~~~~~E~~Af~aya~~fP~~~i~LvDTYd~~--------------------------------------~Ld~~g~~ 89 (180)
+++|+|++|++||++|++.||+++++|+||||++ .||..|++
T Consensus 199 s~i~a~~~e~~Af~~~~~~~p~~~i~LvDTyd~~~~i~~ai~v~~~l~~~~~~~gVRlDSGDl~~l~~~~r~~ld~~G~~ 278 (443)
T PRK12484 199 SFVEAFPDEVAAFRAFARLYPDATTLLVDTYDTLRGVRNAIEVAKELGNRFDPRGVRLDSGDLAELSKATRAILDAAGLE 278 (443)
T ss_pred HHHHhcccHHHHHHHHHHHCCCCcEEEEEcCCcHHHHHHHHHHHHHhhcccCcceeeCCCCCHHHHHHHHHHHHHHCCCC
Confidence 4678889999999999999999899999999995 67888999
Q ss_pred ceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEEeEEcCcceeeecCCCCcccCCc--ceeeeee
Q psy15542 90 ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLVEINGMPRIKLSQDVGKVAVSD--HLYSFIH 167 (180)
Q Consensus 90 ~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKLVei~G~P~~KlS~~~~K~T~Pg--~v~r~~~ 167 (180)
+++||+||||||++|.+|.++|+++|+|||||+|+||.++|+||+|||||+++|+|++|+|+ +|.|.|| +|||++.
T Consensus 279 ~~kIi~S~gLde~~i~~l~~~g~~id~fGvGt~L~~~~~~p~l~~v~Klv~~~g~pv~K~s~--~K~t~pG~k~v~R~~~ 356 (443)
T PRK12484 279 QVKIVASGGLDEYRIAALLAAGAPIDGFGVGTRLGVAADAPVLDSAYKLVAYEGRGVTKLSS--GKVTYPGRKQVFRLYE 356 (443)
T ss_pred CcEEEEeCCCCHHHHHHHHHCCCcCeEEeeCcccccCCCCCccceEEEEEEecCCCeEEeCC--CCCCCCCceEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999975 8999999 7999864
No 5
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=99.98 E-value=1.1e-32 Score=253.58 Aligned_cols=121 Identities=46% Similarity=0.650 Sum_probs=114.2
Q ss_pred ceeeecccHHHHHHHHHHHCCCCeEEeeeecccc---------------------------------------ccCCCCC
Q psy15542 48 LTDEASDGELAALISYAIAFPDGFMALVDTYDVK---------------------------------------RYNIPWF 88 (180)
Q Consensus 48 ~~~~~~~~E~~Af~aya~~fP~~~i~LvDTYd~~---------------------------------------~Ld~~g~ 88 (180)
+++|+|++|++||++|++.||+++++|+||||++ .||..|+
T Consensus 205 s~i~~~~~e~~Af~~~~~~~p~~~i~LvDTyd~~~~~i~~~~~~~~~l~~~~~~~gVRlDSGDl~~l~~~vr~~ld~~G~ 284 (464)
T PRK09243 205 SFVQAFDDEYEAFRAYAETYPDNTVLLVDTYDTLKSGVPNAIKVAKELGDGIELGGVRIDSGDLAYLSKKVRKMLDEAGF 284 (464)
T ss_pred HHHHhccCHHHHHHHHHHHcCCCcEEEEecCCchHhHHHHHHHHHHHhhccccCceeeCCCCCHHHHHHHHHHHHHHCCC
Confidence 4678889999999999999999999999999964 6788899
Q ss_pred CceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEEeEEcCc----ceeeecCCCCcccCCc--ce
Q psy15542 89 AELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLVEINGM----PRIKLSQDVGKVAVSD--HL 162 (180)
Q Consensus 89 ~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKLVei~G~----P~~KlS~~~~K~T~Pg--~v 162 (180)
+++||++||||||++|.+|+++|+++|+|||||+|+|+.++|+||+|||||+++|. |++|+|++++|.|.|| +|
T Consensus 285 ~~~kIi~S~gLde~~i~~l~~~g~~id~fGvGt~L~~~~~~~~l~~v~Klv~~~g~g~w~p~~K~s~~~~K~t~pG~k~v 364 (464)
T PRK09243 285 TDTKIVASNDLDEYTIASLKLQGAPIDGFGVGTKLVTGSDAPALGGVYKLVAIEGEGGMIPKIKLSNSPEKVTTPGRKQV 364 (464)
T ss_pred CCcEEEEeCCCCHHHHHHHHhCCCCceEEEcCccccCCCCCCccceEEEEeEecCCCCccceeecccCCCCcCCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999996 9999999999999999 79
Q ss_pred eeeeee
Q psy15542 163 YSFIHE 168 (180)
Q Consensus 163 ~r~~~~ 168 (180)
||+|..
T Consensus 365 ~R~~~~ 370 (464)
T PRK09243 365 YRIYDK 370 (464)
T ss_pred EEEEcC
Confidence 998863
No 6
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=99.98 E-value=1.2e-32 Score=249.73 Aligned_cols=106 Identities=32% Similarity=0.395 Sum_probs=95.8
Q ss_pred cHHHHHHHHHHHCCCC-eEEeeeecccc---------------------------------ccCCCCCC--ceeEEEeCC
Q psy15542 55 GELAALISYAIAFPDG-FMALVDTYDVK---------------------------------RYNIPWFA--ELQIVASND 98 (180)
Q Consensus 55 ~E~~Af~aya~~fP~~-~i~LvDTYd~~---------------------------------~Ld~~g~~--~vkIv~Sn~ 98 (180)
+|.+||++|+++||++ +|+|+|||+++ .|+..|+. +.+||||||
T Consensus 236 ~e~~Af~~~~~~y~~~l~i~L~DTy~t~~fl~~f~~~~~~~~~GvRlDSGD~~~~~~k~~~~~~~~G~dp~~k~Iv~S~~ 315 (400)
T PRK05321 236 SQYAALEDWVREYRGDLGIALTDTIGMDAFLRDFDLYFAKLFDGLRHDSGDPIEWGEKAIAHYEKLGIDPRTKTLVFSDG 315 (400)
T ss_pred cHHHHHHHHHHHcCCCCeEEEEecCCcHHHHHHHHHHhcccCCEEeeCCCCHHHHHHHHHHHHHHcCCCCCCeEEEEeCC
Confidence 7899999999999987 89999999998 45556662 346999999
Q ss_pred CCHHHHHHHHHc--CCceeEeeeccccccCC-CCCcceeEEEEeEEcCcceeeecCCCCcccCCc
Q psy15542 99 INEETILSLNEQ--GHRIDCFGIGTHLVTCQ-RQPALGCVYKLVEINGMPRIKLSQDVGKVAVSD 160 (180)
Q Consensus 99 Lde~~i~~L~~~--g~~id~fGIGT~Lvt~~-~~p~Lg~VyKLVei~G~P~~KlS~~~~K~T~Pg 160 (180)
|||++|.+|+++ ++.+|+|||||+|+|+. ++||||||||||++||+|+||+|++++|+|+|.
T Consensus 316 Lde~~i~~L~~~~~~~i~~~fGIGT~Lt~~~~~~p~l~~V~KLv~~~g~P~~KlSd~~~K~t~p~ 380 (400)
T PRK05321 316 LDFDKALELYRHFKGRIKLSFGIGTNLTNDFPGVKPLNIVIKLVECNGRPVAKLSDSPGKTMCDD 380 (400)
T ss_pred CCHHHHHHHHHHhcCCCcceEecCcceecCCCCCCCcceEEEEEEECCeeeEEecCCCcccCCCC
Confidence 999999999987 44466999999999999 899999999999999999999999999999988
No 7
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=99.97 E-value=3.8e-32 Score=246.08 Aligned_cols=112 Identities=29% Similarity=0.348 Sum_probs=100.5
Q ss_pred eeeecc-------cHHHHHHHHHHHCCCC-eEEeeeecccc---------------------------------ccCCCC
Q psy15542 49 TDEASD-------GELAALISYAIAFPDG-FMALVDTYDVK---------------------------------RYNIPW 87 (180)
Q Consensus 49 ~~~~~~-------~E~~Af~aya~~fP~~-~i~LvDTYd~~---------------------------------~Ld~~g 87 (180)
++|+|+ +|++||++|+++||++ +|+|+|||++. .++..|
T Consensus 223 ~v~~~~~~~~~~~~e~~Af~~~~~~y~~~~~i~L~DTy~t~~f~~~~~~~~~~~~~GvR~DSGD~~~~~~~~~~~~~~~g 302 (394)
T TIGR01514 223 WFQGHQAISEYRNAQKVALECWINEYDGDLGIALTDTFTTDAFLRDFRPPFADAYDGLRHDSGDPVEWGDKAIAHYQKLG 302 (394)
T ss_pred HHHHhcccccccccHHHHHHHHHHHcCCCCcEEEEecCCCHHHHHHHHHHhcccCCEEecCCCCHHHHHHHHHHHHHHcC
Confidence 456666 6999999999999986 89999999988 455556
Q ss_pred -CCcee-EEEeCCCCHHHHHHHHH--cCCceeEeeeccccccCCC-CCcceeEEEEeEEcCcceeeecCCCCcccCCc
Q psy15542 88 -FAELQ-IVASNDINEETILSLNE--QGHRIDCFGIGTHLVTCQR-QPALGCVYKLVEINGMPRIKLSQDVGKVAVSD 160 (180)
Q Consensus 88 -~~~vk-Iv~Sn~Lde~~i~~L~~--~g~~id~fGIGT~Lvt~~~-~p~Lg~VyKLVei~G~P~~KlS~~~~K~T~Pg 160 (180)
.+++| |+|||||||++|++|++ +|+++|+|||||+|+|+.+ +||||+|||||++||+|+||+|++++|+||..
T Consensus 303 idp~~K~iv~Sd~Lde~~i~~L~~~~~g~~~d~FGVGT~l~~d~~~~~~l~~V~Klv~~~g~P~~KlSd~~~K~t~~d 380 (394)
T TIGR01514 303 IDPKSKIIIFSDSLDVEKAIELSHYFKGRVKASFGIGTNLTNDFGKVEPLNIVIKLVECNGNPVAKLSDSPGKTMGEP 380 (394)
T ss_pred CCCCCcEEEEcCCCCHHHHHHHHHHhcCCCceeEecCcceecCCCCCCCcceEEEEEEECCccceEecCCCcccCCCC
Confidence 36666 78999999999999999 8999999999999999997 99999999999999999999999999999743
No 8
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=99.91 E-value=2.1e-24 Score=196.21 Aligned_cols=108 Identities=37% Similarity=0.583 Sum_probs=96.1
Q ss_pred eecccHHHHHHHHHHHCCCC--eEEeeeecccc------------------------------------ccCCCCCCcee
Q psy15542 51 EASDGELAALISYAIAFPDG--FMALVDTYDVK------------------------------------RYNIPWFAELQ 92 (180)
Q Consensus 51 ~~~~~E~~Af~aya~~fP~~--~i~LvDTYd~~------------------------------------~Ld~~g~~~vk 92 (180)
+.+++|.+||++|++.||++ +++|+|||+.. .||..|++.++
T Consensus 215 ~~~~~e~~A~~~~~~~~~~~~~~i~ltD~~~~~~~~~~~~~~~~~~~~~~~GVR~DSGd~~~~~~kvr~~ld~~G~~~~~ 294 (405)
T COG1488 215 QLFGDEVAAFRAWAETYPGDKLLIALTDTYLDDAFLNAIKVAKALGDKRLDGVRLDSGDPRELSEKVRAHLDKLGYDPVK 294 (405)
T ss_pred cccchHHHHHHHHHHHcCCCCcEEEEEeecchHHHHHhHHHHHhcccccceEEECCCCCHHHHHHHHHHHHHHcCCCceE
Confidence 34458999999999999974 67777777663 67888999999
Q ss_pred EEEe-CCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEEeEEcCcceeeecCCCCcccC
Q psy15542 93 IVAS-NDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLVEINGMPRIKLSQDVGKVAV 158 (180)
Q Consensus 93 Iv~S-n~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKLVei~G~P~~KlS~~~~K~T~ 158 (180)
||+| |++||..|+.|+.+|.++|+|||||+|++..++|++++||||||+||+|++|+|++|+|.++
T Consensus 295 Ii~Sdg~lde~~i~~l~~~g~~~d~FGvGT~L~~~~~~~~~~~v~Klvev~g~p~~Kis~~Pgkk~~ 361 (405)
T COG1488 295 IIVSDGLLDEKIIALLRAFGARNDAFGVGTNLTTAKPRPPLDIVYKLVEVNGKPVAKISKNPGKKQV 361 (405)
T ss_pred EEEeCCcchHHHHHHHHHhCCCccEeccchhhccCCCCCcceeEEEEEEECCccceeecCCCcccee
Confidence 9999 88888888889988988999999999999999999999999999999999999999888654
No 9
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=99.90 E-value=2.6e-24 Score=190.27 Aligned_cols=92 Identities=54% Similarity=0.753 Sum_probs=85.9
Q ss_pred ceeeecccHHHHHHHHHHHCCCCeEEeeeecccc----------------------------------------ccCCCC
Q psy15542 48 LTDEASDGELAALISYAIAFPDGFMALVDTYDVK----------------------------------------RYNIPW 87 (180)
Q Consensus 48 ~~~~~~~~E~~Af~aya~~fP~~~i~LvDTYd~~----------------------------------------~Ld~~g 87 (180)
+++|+|++|++||++|++.||+++++|+||||+. .|+..|
T Consensus 196 s~i~~~~~e~~A~~~~~~~~p~~~i~L~Dtyd~~~~~~~~~l~~~~~l~~~~~~~~gvR~DSGd~~~~~~~~r~~l~~~G 275 (327)
T cd01570 196 SFVQAFDDELAAFRAFAEAYPDNFTLLVDTYDTLRSGLPNAIAVAKELGALGYRLVGVRIDSGDLAYLSKEARKMLDEAG 275 (327)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCCcEEEEEcccchhhhHHHHHHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHHHHHCC
Confidence 4567889999999999999999899999999653 678889
Q ss_pred CCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEEe
Q psy15542 88 FAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLV 139 (180)
Q Consensus 88 ~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKLV 139 (180)
+++++|++||||||++|++|+++|+++|+|||||+|+++.++|+||+|||||
T Consensus 276 ~~~~~Iv~Sdgld~~~i~~l~~~g~~~d~fGvGt~L~~~~~~~~l~~v~Klv 327 (327)
T cd01570 276 LTKVKIVASNDLDEYTIAALNAQGAPIDAFGVGTRLVTSQSQPALGGVYKLV 327 (327)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHCCCeeEEEecCccccCCCCCcccCeeEecC
Confidence 9999999999999999999999999999999999999999999999999996
No 10
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=99.89 E-value=6.5e-23 Score=189.39 Aligned_cols=118 Identities=24% Similarity=0.295 Sum_probs=100.1
Q ss_pred ceeeecc--cHHHHHHHHHHHCCCCeE-Eeeeecccc---------------------------------------c---
Q psy15542 48 LTDEASD--GELAALISYAIAFPDGFM-ALVDTYDVK---------------------------------------R--- 82 (180)
Q Consensus 48 ~~~~~~~--~E~~Af~aya~~fP~~~i-~LvDTYd~~---------------------------------------~--- 82 (180)
+++++|+ +|++||++|++.||++++ +|+||||+. .
T Consensus 238 S~~~s~~~~~E~~AF~~~~~~~p~~~~s~v~DTYD~~~~v~~~i~~l~~~i~~~~~~l~IR~DSGD~~~l~~~~~~~L~~ 317 (470)
T PHA02594 238 STMCSYGAENEDEAFKNSLTLYGTGIYSIVSDTYDFKRAVTEILPELKDEIMARGGKLVIRPDSGDPVDIICGALETLGE 317 (470)
T ss_pred hhhhhcCCchHHHHHHHHHHHCCCCcEEEEEecccHHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4677888 999999999999999865 599999976 2
Q ss_pred -----cCCCCC----CceeEEEeCCCCHHHHHH----HHHcCCc--eeEeeeccccccCCCCCcceeEEEEeEE--cCc-
Q psy15542 83 -----YNIPWF----AELQIVASNDINEETILS----LNEQGHR--IDCFGIGTHLVTCQRQPALGCVYKLVEI--NGM- 144 (180)
Q Consensus 83 -----Ld~~g~----~~vkIv~Sn~Lde~~i~~----L~~~g~~--id~fGIGT~Lvt~~~~p~Lg~VyKLVei--~G~- 144 (180)
+|..|+ ++++||+||||||++|++ |+++|++ +++|||||+|.++.+.|++|+|||++++ ||+
T Consensus 318 ~FG~~ln~~G~kvL~~~v~Ii~gd~ide~~i~~il~~L~~~G~~a~n~~fGvGt~l~q~~~rdt~g~ayKl~~~~~~G~~ 397 (470)
T PHA02594 318 IFGGTVNSKGYKVLDEHVRLIQGDGITLERINRILTRMKENGFASENVAFGMGGGLLQMVTRDTFKFAMKATAIKINGKW 397 (470)
T ss_pred hcCCcccCccccccCCCeEEEEcCCCCHHHHHHHHHHHHHCCCCCCcceEecCccceecCCCcccCceEEEEEEecCCce
Confidence 589999 999999999999999999 5578954 6699999999999999999999999977 576
Q ss_pred -ceeee-cCCCCcccCCcceeee
Q psy15542 145 -PRIKL-SQDVGKVAVSDHLYSF 165 (180)
Q Consensus 145 -P~~Kl-S~~~~K~T~Pg~v~r~ 165 (180)
|++|. -.+++|.|.||++-|.
T Consensus 398 ~~~~K~Pktd~gK~S~~Gr~~~~ 420 (470)
T PHA02594 398 KGVFKNPKTDEGKKSKKGRLARV 420 (470)
T ss_pred eeeeccCcCCCCCccccceeEEE
Confidence 55754 2356899999976544
No 11
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=3e-22 Score=184.80 Aligned_cols=116 Identities=24% Similarity=0.369 Sum_probs=99.4
Q ss_pred ceeeecc--cHHHHHHHHHHHC-CCCe-EEeeeecccc------------------------------------------
Q psy15542 48 LTDEASD--GELAALISYAIAF-PDGF-MALVDTYDVK------------------------------------------ 81 (180)
Q Consensus 48 ~~~~~~~--~E~~Af~aya~~f-P~~~-i~LvDTYd~~------------------------------------------ 81 (180)
+++++|+ +|++||++|++.| |++. ++|+||||+.
T Consensus 231 S~i~~~g~~~E~eAf~~~~~~~~p~~~~~~l~DTyD~~~~i~~i~~~~L~~~i~~~~~~l~VR~DSGD~~~i~~~vr~~L 310 (463)
T PRK09198 231 SVMTSWGREGELEAYRNMIEQFYPGGIVSIVSDSYDLWNAITEPWGGELKDEILARGGTLVIRPDSGDPVTIICGTLELL 310 (463)
T ss_pred hheeecCCccHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHHHHHHHHhhhhhccCCcEEEECCCCCHHHHHHHHHHHH
Confidence 4578887 7999999999999 8776 6999999975
Q ss_pred ------ccCCCCC----CceeEEEeCCCCHHHHHH----HHHcCCcee--EeeeccccccCCCCCcceeEEEEe--EEcC
Q psy15542 82 ------RYNIPWF----AELQIVASNDINEETILS----LNEQGHRID--CFGIGTHLVTCQRQPALGCVYKLV--EING 143 (180)
Q Consensus 82 ------~Ld~~g~----~~vkIv~Sn~Lde~~i~~----L~~~g~~id--~fGIGT~Lvt~~~~p~Lg~VyKLV--ei~G 143 (180)
.++..|+ ++++|++||||||++|.+ |.++|+++| +|||||+|.++.+.|++|+|||+| ++||
T Consensus 311 ~e~fG~t~n~kGykvL~~~v~Ii~s~glde~~i~~il~~l~~~G~~~dni~FGvGt~l~~~~~r~t~~~a~Kl~~~~~~G 390 (463)
T PRK09198 311 DEIFGGTVNSKGYKVLNPHVGVIQGDGITLDSIEAILEALKAKGFAAENIVFGMGGALLQYVNRDTQGFAMKASAIEVNG 390 (463)
T ss_pred HHhhCcccccCcccccCCCeEEEEeCCCCHHHHHHHHHHHHhCCCccccceEecCcccccCCCCCccCceEEEEEEeeCC
Confidence 2334486 399999999999999999 778999999 999999999999999999999999 4576
Q ss_pred c--ceee---ecCCCCcccCCc--ceeee
Q psy15542 144 M--PRIK---LSQDVGKVAVSD--HLYSF 165 (180)
Q Consensus 144 ~--P~~K---lS~~~~K~T~Pg--~v~r~ 165 (180)
+ |++| .| ++|.+.|| +++|+
T Consensus 391 ~~~~v~K~P~t~--~gK~S~~G~k~v~r~ 417 (463)
T PRK09198 391 EWRDIFKDPITD--QGKKSKKGRLKLIKD 417 (463)
T ss_pred ccceeeccCcCC--CCCcCccceeEEEEc
Confidence 4 9998 44 36999999 67775
No 12
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2.4.2.11 from EC) is the rate-limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also contains a number of closely related proteins for which a catalytic activity has not been experimentally demonstrated.; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm; PDB: 3OS4_B 1VLP_C 2F7F_A 1YIR_D 1YBE_B 2H3D_A 2H3B_B 2GVL_B 2IM5_B 2G96_B ....
Probab=99.86 E-value=1.2e-22 Score=173.01 Aligned_cols=107 Identities=44% Similarity=0.571 Sum_probs=89.6
Q ss_pred eeecccHHHHHHHHHHHCCCCeEEeeeecccc----------------------------------------------cc
Q psy15542 50 DEASDGELAALISYAIAFPDGFMALVDTYDVK----------------------------------------------RY 83 (180)
Q Consensus 50 ~~~~~~E~~Af~aya~~fP~~~i~LvDTYd~~----------------------------------------------~L 83 (180)
+|.+ +|+++|+++.+.||+ ..+++|+|+.. .|
T Consensus 57 ~~~~-~e~~~f~~~~~~~~~-~~~v~d~~d~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~gvR~DSGD~~~~~~~~r~~f 134 (245)
T PF04095_consen 57 VMAF-GELEAFRHALEQFPN-VSLVSDSYDLWNDVYDDLGIALKDAIGTRGFLKDFGRFLGVRPDSGDPAELSEKLRKIF 134 (245)
T ss_dssp HHHH-HHHHHHHHHHHHHHH-EEEESHHHHHHHHHHCCCCEEEHHHHTHHHHHHCSSHSEEEEE-SS-HHHHHHHHHHHH
T ss_pred eccc-hhhhhhhHHHHHhhh-ccccchhhhhhhhhccccccccchheeccchhcccccceeeecCCCChHHHHHHHHHHH
Confidence 3444 578888888888887 66666776554 23
Q ss_pred ----CCCCC---CceeEEEeCCCCHHHHHHHHHcCCc---eeEeeeccccccCCCC---------CcceeEEEEeEEcCc
Q psy15542 84 ----NIPWF---AELQIVASNDINEETILSLNEQGHR---IDCFGIGTHLVTCQRQ---------PALGCVYKLVEINGM 144 (180)
Q Consensus 84 ----d~~g~---~~vkIv~Sn~Lde~~i~~L~~~g~~---id~fGIGT~Lvt~~~~---------p~Lg~VyKLVei~G~ 144 (180)
+..|+ ++++|++||+|||++|.+|.+++++ +++|||||+|+||.++ |++++|||+++++|+
T Consensus 135 ~~~~~~~g~kvl~~~~Ii~Sd~Lde~~i~~l~~~~~~~g~~~~fGVGT~L~t~~~~~~~~~~~K~~~l~~v~Klv~~~~~ 214 (245)
T PF04095_consen 135 DEAVGIKGYKVLPSKKIIASDGLDEEKIEELLEQGAEKGFNDSFGVGTNLVTDFDRPTLGFVYKLPALNIVGKLVEINGQ 214 (245)
T ss_dssp HHTETTTGGEE-TCSEEEEESS-SHHHHHHHHHHHCCTTSEEEEEESHHHHSSCTTTTTTEEEEEEEEEEEEEEEEETTE
T ss_pred HHHhCCCCccccceEEEEEeCCCCHHHHHHHHHHhhcccceeEeecCchheeeCCCCccCceeccccceeCCeEEEeCCC
Confidence 44455 5678999999999999999999999 9999999999999999 888889999999999
Q ss_pred ceeeecCCCCcccC
Q psy15542 145 PRIKLSQDVGKVAV 158 (180)
Q Consensus 145 P~~KlS~~~~K~T~ 158 (180)
|++|+|++++|.|+
T Consensus 215 P~~K~S~~~~K~t~ 228 (245)
T PF04095_consen 215 PVIKLSDDSEKGTC 228 (245)
T ss_dssp ETTBGGSSTTGSSG
T ss_pred CCccCCCCCCCCcC
Confidence 99999999999995
No 13
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=99.85 E-value=2.3e-21 Score=173.79 Aligned_cols=100 Identities=24% Similarity=0.378 Sum_probs=88.0
Q ss_pred eeecc-cHHHHHHHHHHHCCCC-eEEeeeec-ccc---------------------------------------------
Q psy15542 50 DEASD-GELAALISYAIAFPDG-FMALVDTY-DVK--------------------------------------------- 81 (180)
Q Consensus 50 ~~~~~-~E~~Af~aya~~fP~~-~i~LvDTY-d~~--------------------------------------------- 81 (180)
+|.|+ ++.+||++|++.||++ .++||||| |+.
T Consensus 182 i~~~~g~~~~A~~a~~~~~Pe~~~ivlVD~~~d~~~~al~~a~~~g~~l~gVRlDs~gdl~DK~~~~~~~~~~~~~~~G~ 261 (352)
T PRK07188 182 IQMFNGDVVEACKAYHKTFPEDELIALVDYNNDVITDSLKVAREFGDKLKGVRVDTSKNMIDKYFIRHPEVLGTFDPRGV 261 (352)
T ss_pred HHHCCCcHHHHHHHHHHHCCCCCeEEEEecCcccHHHHHHHHHHhCCCccEEEeCCcchHhhhhcccccccccccccccc
Confidence 67776 7799999999999984 89999986 333
Q ss_pred ----------ccCCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEEeEEcCcceeeecC
Q psy15542 82 ----------RYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLVEINGMPRIKLSQ 151 (180)
Q Consensus 82 ----------~Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKLVei~G~P~~KlS~ 151 (180)
.||..|++++||++||||||++|++|.++|+|||+|||||+|++|+ .+++.|+||+||+|++|+..
T Consensus 262 ~~~l~~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~~----~~~t~d~v~~~g~p~aK~Gr 337 (352)
T PRK07188 262 NPELIKALRKALDENGGKHVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKIN----IGFTGDAVELNGKKEAKAGR 337 (352)
T ss_pred cHHHHHHHHHHHhhCCCCCcEEEEeCCCCHHHHHHHHHcCCCccEEecCcccccCc----ccceeeEEEECCEeecccCC
Confidence 2566788999999999999999999999999999999999999987 67777999999999999977
Q ss_pred CC
Q psy15542 152 DV 153 (180)
Q Consensus 152 ~~ 153 (180)
..
T Consensus 338 ~~ 339 (352)
T PRK07188 338 KY 339 (352)
T ss_pred CC
Confidence 43
No 14
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=99.83 E-value=6.8e-21 Score=173.46 Aligned_cols=102 Identities=25% Similarity=0.327 Sum_probs=88.8
Q ss_pred ceeeecc--cHHHHHHHHHHHCCCCeE-Eeeeecccc---------------------------------------ccCC
Q psy15542 48 LTDEASD--GELAALISYAIAFPDGFM-ALVDTYDVK---------------------------------------RYNI 85 (180)
Q Consensus 48 ~~~~~~~--~E~~Af~aya~~fP~~~i-~LvDTYd~~---------------------------------------~Ld~ 85 (180)
+++++|+ +|++||++|++.||++.+ +|+||||+. .|+.
T Consensus 230 S~i~s~~~~~E~~AF~~~~~~fp~~~~~lv~DTYD~~~~~~~~~~~lk~~i~~~g~~lviRpDSGD~~~l~~~~~~~L~~ 309 (407)
T cd01569 230 STMTAWGRERELEAFRNLLEQFGPGIVSVVSDSYDFWNALTLWGPRLKDEILARGGTLVIRPDSGDPVDIICGVLEILGE 309 (407)
T ss_pred HHHHhCCCccHHHHHHHHHHHcCCCcEEEEecCccHHHHHHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 4677888 999999999999998765 559999976 3444
Q ss_pred --------CCC----CceeEEEeCCCCHHHHHH----HHHcCCcee--EeeeccccccCCCCCcceeEEEEeEE--cCc-
Q psy15542 86 --------PWF----AELQIVASNDINEETILS----LNEQGHRID--CFGIGTHLVTCQRQPALGCVYKLVEI--NGM- 144 (180)
Q Consensus 86 --------~g~----~~vkIv~Sn~Lde~~i~~----L~~~g~~id--~fGIGT~Lvt~~~~p~Lg~VyKLVei--~G~- 144 (180)
.|+ ++++|++||||||++|++ |.++|+++| +|||||+|.++.++|.+|||||++++ ||+
T Consensus 310 ~FG~~~n~kGykvl~~~v~Ii~gd~ide~~i~~Il~~L~~~G~~~dNi~fGvGt~l~q~~~rdt~~~ayK~~~~~~~g~~ 389 (407)
T cd01569 310 IFGGTVNSKGYKVLNPHVRIIQGDGITLERIEEILERLKAKGFASENIVFGMGGGLLQKVTRDTQGFAMKASAIEINGKW 389 (407)
T ss_pred HhCCcccCCcccccCCceEEEEcCCCCHHHHHHHHHHHHHCCCccccceEecCccceecCCCcccCceeEEEEEecCCee
Confidence 475 699999999999999995 778999999 99999999999999999999999987 554
Q ss_pred -ceeee
Q psy15542 145 -PRIKL 149 (180)
Q Consensus 145 -P~~Kl 149 (180)
|++|-
T Consensus 390 ~~v~K~ 395 (407)
T cd01569 390 RDVFKD 395 (407)
T ss_pred eeeeeC
Confidence 88875
No 15
>KOG2511|consensus
Probab=99.77 E-value=1.8e-19 Score=161.22 Aligned_cols=129 Identities=28% Similarity=0.276 Sum_probs=94.3
Q ss_pred ceeeeccCccccccccccccCCCCc-chHHHHHHHHHHhhcCccccceeeecccHHHHHHHHHHHCCCCe-EEeeeec-c
Q psy15542 3 SSILILSYLSSLFSQTIQDRASGQD-ADLLALSISWRNKISPILDVLTDEASDGELAALISYAIAFPDGF-MALVDTY-D 79 (180)
Q Consensus 3 ~~i~s~~~~~~~~~~~l~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~E~~Af~aya~~fP~~~-i~LvDTY-d 79 (180)
+|||||+|++|+.++.++.++|.+. .++...++.|+...- + -.-|...||+.+ +.|.+-| +
T Consensus 206 ~~v~~fas~~e~~~~~~r~a~~k~~~~~~~~~~~~~Ltd~f---~-------------~Dv~~~~~~nf~Av~lal~~~G 269 (420)
T KOG2511|consen 206 EWVMGFASIDEIYDKANRIADGKWTCTFGASNVQTALTDTF---S-------------TDVFLKSFPNFCAVALALNDLG 269 (420)
T ss_pred hhhhhcccHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhh---h-------------HHHHHhcCCccchhhhhhhhcc
Confidence 6899999999999999999999986 788888999998762 1 122455566532 3333333 2
Q ss_pred cc---------------------ccCCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEE
Q psy15542 80 VK---------------------RYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKL 138 (180)
Q Consensus 80 ~~---------------------~Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKL 138 (180)
+. +.=...+.++-+.+||++||++|..|++||+++|+||||||||||. |+
T Consensus 270 vR~DSGdl~~~skkvr~~y~~v~~~~K~~~~~m~~~a~N~~ne~ti~~lnkq~~e~~aFGIGTnl~t~~-q~-------- 340 (420)
T KOG2511|consen 270 VRQDSGDLAEYSKKVRKHYCDVERDPKPSKGIMYSDALNVLNEITIDALNKQGGEVDAFGIGTNLTTDF-QK-------- 340 (420)
T ss_pred eeccCCCHHHHHHHHHHHHHHhhccCCCcceEEEEecccchhHHHHHHHHhcCCceeeecccccccccc-cc--------
Confidence 22 1112667778899999999999999999999999999999999994 43
Q ss_pred eEEcCcceeeecCCCCcccCCc
Q psy15542 139 VEINGMPRIKLSQDVGKVAVSD 160 (180)
Q Consensus 139 Vei~G~P~~KlS~~~~K~T~Pg 160 (180)
+.+| ||||+|+.|.|+||
T Consensus 341 ---~sqP-iKLseDvtkvSiP~ 358 (420)
T KOG2511|consen 341 ---NSQP-IKLSEDVTKVSIPG 358 (420)
T ss_pred ---ccCC-cccccccceecccc
Confidence 3445 55555555555555
No 16
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.73 E-value=3.3e-18 Score=151.14 Aligned_cols=89 Identities=38% Similarity=0.481 Sum_probs=81.0
Q ss_pred eeeeccc-HHHHHHHHHHHCCC----CeEEeeeecccc--------------------------------------ccCC
Q psy15542 49 TDEASDG-ELAALISYAIAFPD----GFMALVDTYDVK--------------------------------------RYNI 85 (180)
Q Consensus 49 ~~~~~~~-E~~Af~aya~~fP~----~~i~LvDTYd~~--------------------------------------~Ld~ 85 (180)
++|+|++ |.+||+||++.+|+ .+++|+||||+. .|+.
T Consensus 208 ~i~a~~~~~~~~~~Af~~~~~~~~~~~~i~L~DTyd~~~~~~~~~~~~~~~~~~~~~~gvR~DSGd~~~~~~~~~~~l~~ 287 (343)
T cd01567 208 WIQAFGALEEAAFEAFARWLPQFGGGLGIALIDTYDTDNGFLNALKLAKALGAGGGLLGVRLDSGDPVELIKKVRKHLDE 287 (343)
T ss_pred HHHHhhccHHHHHHHHHHHhhhcCCCceEEEEecCChHHHHHHHHHHHHhhcccCCCcEEECCCCCHHHHHHHHHHHHHH
Confidence 5788888 89999999999987 689999999885 6777
Q ss_pred CCC--CceeEEEeCCCC-HHHHHHHHHcCC-ceeEeeeccccccCCCCCcceeEEE
Q psy15542 86 PWF--AELQIVASNDIN-EETILSLNEQGH-RIDCFGIGTHLVTCQRQPALGCVYK 137 (180)
Q Consensus 86 ~g~--~~vkIv~Sn~Ld-e~~i~~L~~~g~-~id~fGIGT~Lvt~~~~p~Lg~VyK 137 (180)
.|+ .+.+|++||||| |++|+.+..+++ ++|+|||||+|+++.+.|+||+|||
T Consensus 288 ~g~~~~~~~ii~sg~l~~~~~i~~~~~~~~~~~~~fGvGt~l~~~~~~~~l~~v~K 343 (343)
T cd01567 288 LGIDLNKKKIIISGDLDTEEAIELLLEQGASPNDAFGVGTSLTNDLGRPPLGFVYK 343 (343)
T ss_pred cCCCCCCeEEEEECCCCHHHHHHHHHHcCCCcCcEEeeCcccccCCCCCccCeeeC
Confidence 888 888999999999 999999999887 8999999999999999999999998
No 17
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=99.71 E-value=5.7e-17 Score=144.79 Aligned_cols=105 Identities=25% Similarity=0.376 Sum_probs=92.6
Q ss_pred eeecccHHHHHHHHHHHCCC--CeEEeeeecccc------------------ccCC---------------------CCC
Q psy15542 50 DEASDGELAALISYAIAFPD--GFMALVDTYDVK------------------RYNI---------------------PWF 88 (180)
Q Consensus 50 ~~~~~~E~~Af~aya~~fP~--~~i~LvDTYd~~------------------~Ld~---------------------~g~ 88 (180)
++.|+++.+||++|++.+|. ..++++||++.. +||- .|+
T Consensus 180 I~~fg~~~~A~~~~~~~~p~~~~i~vevdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~~~g~l~~~v~~vr~~ld~~g~ 259 (343)
T PRK08662 180 ILIFGDQVEAWKAFDEVVPPDVPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPSSRRGNFRKIVREVRWTLDIRGY 259 (343)
T ss_pred HHHcCCHHHHHHHHHHHCCCCCCEEEEEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCCCCccHHHHHHHHHHHHHhcCC
Confidence 77789999999999999994 489999999433 2332 456
Q ss_pred CceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEEeEEcCcceeeecCCCCcccCCc
Q psy15542 89 AELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLVEINGMPRIKLSQDVGKVAVSD 160 (180)
Q Consensus 89 ~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKLVei~G~P~~KlS~~~~K~T~Pg 160 (180)
++++|.||||||+++|.++.+. +|.|||||.+.. +|++++++|+|++||+|++|+|+.+||..+|.
T Consensus 260 ~~v~IeaSGgI~~~ni~~ya~~---vD~isvGs~~~~---a~~lDis~~iv~~~g~~~~K~~~~~g~~~~~~ 325 (343)
T PRK08662 260 EHVKIFVSGGLDPERIRELRDV---VDGFGVGTYISF---APPVDFSMDIVEVEGKPIAKRGKLPGIKQVPR 325 (343)
T ss_pred CCeEEEEeCCCCHHHHHHHHHh---CCEEEcCccccC---CCccceEEEEEEECCeeeEeecCCcccccCCC
Confidence 7899999999999999999985 999999999974 69999999999999999999999999998887
No 18
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.58 E-value=6.7e-15 Score=129.23 Aligned_cols=97 Identities=29% Similarity=0.569 Sum_probs=83.7
Q ss_pred eeeccc-HHHHHHHHHHHCCC--CeEEeeeecccc------------------c---------------------cCCCC
Q psy15542 50 DEASDG-ELAALISYAIAFPD--GFMALVDTYDVK------------------R---------------------YNIPW 87 (180)
Q Consensus 50 ~~~~~~-E~~Af~aya~~fP~--~~i~LvDTYd~~------------------~---------------------Ld~~g 87 (180)
+|.+++ +.+||++|.+.+|. ..++++||++.. + ++..|
T Consensus 163 I~~~g~~~~~A~~~~~~~~p~~~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~~g 242 (302)
T cd01571 163 IQIFGGDQVEAWKAFDETYPEDVPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSRRGVFRYLIREVRWALDIRG 242 (302)
T ss_pred HHHcCchHHHHHHHHHHHCCCcCCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 567777 79999999999993 478999999851 2 33346
Q ss_pred CCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEEeEEcCcceeeecC
Q psy15542 88 FAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLVEINGMPRIKLSQ 151 (180)
Q Consensus 88 ~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKLVei~G~P~~KlS~ 151 (180)
+++++|.+|||||++.|.++.+.| +|.||||+.+.. +|++++++|++++||+|++|.+.
T Consensus 243 ~~~~~ieaSGgI~~~~i~~~a~~g--vD~isvGs~~~~---~~~~D~s~~iv~~~g~~~~K~gr 301 (302)
T cd01571 243 YKHVKIFVSGGLDEEDIKELEDVG--VDAFGVGTAISK---APPVDFTMDIVEVNGQPIAKRGK 301 (302)
T ss_pred CCCeEEEEeCCCCHHHHHHHHHcC--CCEEECCcccCC---CCCCCEEEEEEEECCeeeeccCC
Confidence 788999999999999999999987 999999999853 78999999999999999999864
No 19
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=99.13 E-value=1.4e-10 Score=99.17 Aligned_cols=78 Identities=36% Similarity=0.522 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHHCCCCeEEeeeecccc-------------------------------------ccCCCCCCceeEEEeC
Q psy15542 55 GELAALISYAIAFPDGFMALVDTYDVK-------------------------------------RYNIPWFAELQIVASN 97 (180)
Q Consensus 55 ~E~~Af~aya~~fP~~~i~LvDTYd~~-------------------------------------~Ld~~g~~~vkIv~Sn 97 (180)
++.+|++++++.+|+.+++|+|||++. .|+..++++++|++||
T Consensus 167 ~~~~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sg 246 (281)
T cd00516 167 GELAAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEELDPAVLILKARAHLDGKGLPRVKIEASG 246 (281)
T ss_pred CHHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChHHHHHHHHHHHHHHhhhhcCCCceEEEEeC
Confidence 445899999999998788999999775 3445567889999999
Q ss_pred CCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEE
Q psy15542 98 DINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYK 137 (180)
Q Consensus 98 ~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyK 137 (180)
|+|++.|..+.+.| +|.|||||.+.+. |++++++|
T Consensus 247 gi~~~~i~~~~~~g--vd~~gvG~~~~~~---~~~di~~k 281 (281)
T cd00516 247 GLDEENIRAYAETG--VDVFGVGTLLHSA---PPLDIVLK 281 (281)
T ss_pred CCCHHHHHHHHHcC--CCEEEeCcccccC---cccCeEeC
Confidence 99999999999977 9999999999864 89999986
No 20
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.29 E-value=0.00019 Score=58.75 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=33.7
Q ss_pred CCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEE
Q psy15542 88 FAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYK 137 (180)
Q Consensus 88 ~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyK 137 (180)
..+++|.+|||+|++.|.++.+.| +|.+++|.-.- ..|++++.+|
T Consensus 125 ~~~v~ie~SGGI~~~ni~~ya~~g--vD~isvg~~~~---~a~~~D~sl~ 169 (169)
T PF01729_consen 125 NPRVKIEASGGITLENIAEYAKTG--VDVISVGSLTH---SAPPLDFSLD 169 (169)
T ss_dssp TTTSEEEEESSSSTTTHHHHHHTT---SEEEECHHHH---SBE---EEEE
T ss_pred CCcEEEEEECCCCHHHHHHHHhcC--CCEEEcChhhc---CCcccCcCcC
Confidence 345899999999999999999977 89999997653 3678887664
No 21
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=95.42 E-value=0.066 Score=46.80 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=36.3
Q ss_pred CCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEE
Q psy15542 88 FAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKL 138 (180)
Q Consensus 88 ~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKL 138 (180)
+++++|++|||+|++.+.++.+.| +|.+ +.+.++. +|++++.+++
T Consensus 228 ~~~i~i~AsGGI~~~ni~~~~~~G--vd~I-~vsai~~---a~~~D~s~~~ 272 (272)
T cd01573 228 APPVLLAAAGGINIENAAAYAAAG--ADIL-VTSAPYY---AKPADIKVKI 272 (272)
T ss_pred CCCceEEEECCCCHHHHHHHHHcC--CcEE-EEChhhc---CcccceEEeC
Confidence 357899999999999999999866 6788 6666653 7888887764
No 22
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.40 E-value=0.063 Score=47.37 Aligned_cols=64 Identities=14% Similarity=0.270 Sum_probs=50.4
Q ss_pred EEeeeecccc-------ccCCCCC-CceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEEeE
Q psy15542 72 MALVDTYDVK-------RYNIPWF-AELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLVE 140 (180)
Q Consensus 72 i~LvDTYd~~-------~Ld~~g~-~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKLVe 140 (180)
+.+.|..+.. .++..++ ++++|.+|||+|++.|.++.+.| +|.+.+|. +++ ..|++++-+|+++
T Consensus 205 iI~LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tG--vD~Is~ga-lt~--sa~~~Dis~~i~~ 276 (278)
T PRK08385 205 IIMLDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLD--VDVISLGA-LTH--SVRNFDVSLEILK 276 (278)
T ss_pred EEEECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcC--CCEEEeCh-hhc--CCCccceEEEEec
Confidence 6777998776 3554443 47899999999999999999866 78999987 332 4789999998864
No 23
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.06 E-value=0.051 Score=48.26 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=36.1
Q ss_pred CCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEE
Q psy15542 88 FAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYK 137 (180)
Q Consensus 88 ~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyK 137 (180)
.++++|.+|||+|++.+.++.+.| +|.+.+|.-. + ..|++++.++
T Consensus 244 ~~~v~ieaSGGI~~~ni~~yA~tG--vD~Is~galt-~--sa~~~Disl~ 288 (289)
T PRK07896 244 APTVLLESSGGLTLDTAAAYAETG--VDYLAVGALT-H--SVPVLDIGLD 288 (289)
T ss_pred CCCEEEEEECCCCHHHHHHHHhcC--CCEEEeChhh-c--CCCccccccc
Confidence 567889999999999999999866 7899999733 2 3577776654
No 24
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.85 E-value=0.12 Score=45.55 Aligned_cols=62 Identities=19% Similarity=0.357 Sum_probs=46.4
Q ss_pred EEeeeecccc------ccCCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEE
Q psy15542 72 MALVDTYDVK------RYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKL 138 (180)
Q Consensus 72 i~LvDTYd~~------~Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKL 138 (180)
+.+.|..+.. ++-..+.++++|.+|||+|++.+.++.+.| +|.+.+|+-.. ..|++++..++
T Consensus 205 iI~LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~G--vD~IsvG~l~~---sa~~~D~sl~~ 272 (273)
T PRK05848 205 IVMCDNMSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSG--VDAISSGSLIH---QATWIDMSMKM 272 (273)
T ss_pred EEEECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcC--CCEEEeChhhc---CCCccceeeec
Confidence 3445777666 222244578899999999999999999866 68999998553 36788887764
No 25
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=92.40 E-value=0.47 Score=42.41 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=36.7
Q ss_pred CceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEE
Q psy15542 89 AELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKL 138 (180)
Q Consensus 89 ~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKL 138 (180)
.+++|-+|||+|++.+.++.+.| +|.+.+|. |++ ..|++++.+++
T Consensus 251 ~~~~ieaSGGI~~~ni~~yA~tG--VD~Is~ga-lth--sa~~lD~sl~~ 295 (296)
T PRK09016 251 GRALLEVSGNVTLETLREFAETG--VDFISVGA-LTK--HVQALDLSMRF 295 (296)
T ss_pred CCeEEEEECCCCHHHHHHHHhcC--CCEEEeCc-ccc--CCCccceeeec
Confidence 37889999999999999999866 68888886 443 36888888764
No 26
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.85 E-value=0.58 Score=41.51 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=46.2
Q ss_pred EEeeeeccccccCC------CCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEEe
Q psy15542 72 MALVDTYDVKRYNI------PWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLV 139 (180)
Q Consensus 72 i~LvDTYd~~~Ld~------~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKLV 139 (180)
+.+.|..+...+.. .-.++++|.+|||+|++.|.++.+.| +|.+-+|+-.. .+|++++-++++
T Consensus 219 ~I~LDn~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tG--vD~Isvgsl~~---sa~~~Dis~~i~ 287 (288)
T PRK07428 219 IIMLDNMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETG--VDYISSSAPIT---RSPWLDLSMRIL 287 (288)
T ss_pred EEEECCCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcC--CCEEEEchhhh---CCCccceEEEec
Confidence 45567776651111 11467889999999999999999866 78888887443 378999988875
No 27
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.21 E-value=0.53 Score=41.73 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=33.9
Q ss_pred ceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEE
Q psy15542 90 ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYK 137 (180)
Q Consensus 90 ~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyK 137 (180)
+..|-+|||+|++.|.++.+.| +|.+.+|. |++ ..|++++.+|
T Consensus 238 ~~~leaSGGI~~~ni~~yA~tG--VD~Is~Ga-lth--sa~~~Disl~ 280 (281)
T PRK06106 238 RAITEASGRITPETAPAIAASG--VDLISVGW-LTH--SAPVLDIGLD 280 (281)
T ss_pred CceEEEECCCCHHHHHHHHhcC--CCEEEeCh-hhc--CCCccccccC
Confidence 3459999999999999999866 78888887 443 3677877655
No 28
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=90.52 E-value=0.99 Score=39.35 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=34.3
Q ss_pred eeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEE
Q psy15542 91 LQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYK 137 (180)
Q Consensus 91 vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyK 137 (180)
++|++|||+|++.+.++.+.| +|.+.+ +.++. ..|++++..+
T Consensus 223 ipi~AsGGI~~~ni~~~a~~G--vd~Isv-gait~--sa~~~D~sl~ 264 (265)
T TIGR00078 223 VLLEASGGITLDNLEEYAETG--VDVISS-GALTH--SVPALDFSLK 264 (265)
T ss_pred CcEEEECCCCHHHHHHHHHcC--CCEEEe-CHHHc--CCCccceeee
Confidence 689999999999999999866 688999 45654 3678887765
No 29
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=89.52 E-value=1.2 Score=38.83 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=39.4
Q ss_pred EEeeeeccccccC-----CCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeE
Q psy15542 72 MALVDTYDVKRYN-----IPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCV 135 (180)
Q Consensus 72 i~LvDTYd~~~Ld-----~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~V 135 (180)
++++|.+....+. .....+++|++|||+|++.+.++.+.| +|.+.+| .++. ..|++++.
T Consensus 204 ~I~ld~~~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~~G--ad~Isvg-al~~--s~~~~D~s 267 (269)
T cd01568 204 IIMLDNMSPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAETG--VDVISTG-ALTH--SAPALDIS 267 (269)
T ss_pred EEEECCCCHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHHcC--CCEEEEc-HHHc--CCCccCcc
Confidence 4555777555111 111257889999999999999999866 6888886 4443 24566654
No 30
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.10 E-value=0.69 Score=40.79 Aligned_cols=63 Identities=24% Similarity=0.366 Sum_probs=45.3
Q ss_pred CeEEeeeeccccccCC--CCC-CceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEE
Q psy15542 70 GFMALVDTYDVKRYNI--PWF-AELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKL 138 (180)
Q Consensus 70 ~~i~LvDTYd~~~Ld~--~g~-~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKL 138 (180)
+.|.| |..+...+.. ... .++++++|||+|++.+.++.+.| +|.+.+|. +++ ..|++++.+++
T Consensus 211 D~I~L-D~~~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~tG--vD~Isvg~-lt~--s~~~~D~sl~~ 276 (277)
T PRK05742 211 DIVML-DELSLDDMREAVRLTAGRAKLEASGGINESTLRVIAETG--VDYISIGA-MTK--DVKAVDLSMRL 276 (277)
T ss_pred CEEEE-CCCCHHHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHcC--CCEEEECh-hhc--CCcccceeeec
Confidence 35555 8877662210 001 37889999999999999999865 68888887 433 37889988875
No 31
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=88.25 E-value=0.7 Score=39.08 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=34.4
Q ss_pred CCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeecccccc
Q psy15542 86 PWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 86 ~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
.+|++++++.+||++.+.+.++.+.| ..++|+|+.|+.
T Consensus 144 ~plp~i~~~ptGGV~~~N~~~~l~aG--a~~vg~Gs~L~~ 181 (204)
T TIGR01182 144 GPFPQVRFCPTGGINLANVRDYLAAP--NVACGGGSWLVP 181 (204)
T ss_pred ccCCCCcEEecCCCCHHHHHHHHhCC--CEEEEEChhhcC
Confidence 47899999999999999999999866 579999999985
No 32
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=88.17 E-value=0.74 Score=36.99 Aligned_cols=37 Identities=14% Similarity=0.322 Sum_probs=31.9
Q ss_pred CceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCC
Q psy15542 89 AELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQ 127 (180)
Q Consensus 89 ~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~ 127 (180)
.+++|++.+|++++.+.++.+.| +|.+++|+.|+...
T Consensus 157 ~~~~i~~~GGI~~~~i~~~~~~G--ad~vvvGsai~~~~ 193 (202)
T cd04726 157 LGVKVAVAGGITPDTLPEFKKAG--ADIVIVGRAITGAA 193 (202)
T ss_pred cCCCEEEECCcCHHHHHHHHhcC--CCEEEEeehhcCCC
Confidence 46789999999999999999866 68999999997543
No 33
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.90 E-value=0.69 Score=39.11 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=33.6
Q ss_pred CCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeecccccc
Q psy15542 86 PWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 86 ~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
.++++++++++||++++.+.++.+.| ++++|+|+.|..
T Consensus 151 ~~~p~ip~~atGGI~~~N~~~~l~aG--a~~vavgs~l~~ 188 (213)
T PRK06552 151 GPLPQVNVMVTGGVNLDNVKDWFAAG--ADAVGIGGELNK 188 (213)
T ss_pred hhCCCCEEEEECCCCHHHHHHHHHCC--CcEEEEchHHhC
Confidence 46778999999999999999999865 689999999964
No 34
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=86.20 E-value=1.1 Score=36.33 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=33.1
Q ss_pred CCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeecccccc
Q psy15542 86 PWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 86 ~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
..+++++++++||++++.+.++.+.| +++.++|+.+.+
T Consensus 139 ~~~~~~p~~a~GGI~~~n~~~~~~~G--~~~v~v~s~i~~ 176 (190)
T cd00452 139 GPFPQVRFMPTGGVSLDNAAEWLAAG--VVAVGGGSLLPK 176 (190)
T ss_pred hhCCCCeEEEeCCCCHHHHHHHHHCC--CEEEEEchhcch
Confidence 34566899999999999999999977 899999998863
No 35
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=84.81 E-value=5.9 Score=35.20 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=44.2
Q ss_pred EEeeeecccc-------ccCCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEEeEE
Q psy15542 72 MALVDTYDVK-------RYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLVEI 141 (180)
Q Consensus 72 i~LvDTYd~~-------~Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKLVei 141 (180)
+.+.|.++.. .+.. -.+++.|-+|||+|++.|.++.+.| +|.+ +-+.|++ +|++++-.++-..
T Consensus 212 iI~LDn~~~e~l~~av~~~~~-~~~~~~leaSGGI~~~ni~~yA~tG--vD~I-s~gal~~---a~~~Disl~i~~~ 281 (284)
T PRK06096 212 VLQLDKFSPQQATEIAQIAPS-LAPHCTLSLAGGINLNTLKNYADCG--IRLF-ITSAPYY---AAPADIKVSLQPA 281 (284)
T ss_pred EEEECCCCHHHHHHHHHHhhc-cCCCeEEEEECCCCHHHHHHHHhcC--CCEE-EECcccc---CCCcCeEEEEEec
Confidence 4555877666 2211 1346789999999999999999876 6766 3344543 4899999888543
No 36
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.60 E-value=4.5 Score=34.21 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=30.9
Q ss_pred CCCceeEEEeCCCCHHHHHHHHHcCCceeEeeecccccc
Q psy15542 87 WFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 87 g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
+|++++++.+||++++.+.++.+.|. -..|.|+.|+.
T Consensus 152 p~p~~~~~ptGGV~~~ni~~~l~ag~--v~~vggs~L~~ 188 (212)
T PRK05718 152 PFPDVRFCPTGGISPANYRDYLALPN--VLCIGGSWMVP 188 (212)
T ss_pred cCCCCeEEEeCCCCHHHHHHHHhCCC--EEEEEChHhCC
Confidence 58889999999999999999999872 34555999974
No 37
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.28 E-value=1.1 Score=38.42 Aligned_cols=38 Identities=18% Similarity=0.431 Sum_probs=33.9
Q ss_pred CCCCceeEEEeCCCCH--HHHHHHHHcCCceeEeeecccccc
Q psy15542 86 PWFAELQIVASNDINE--ETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 86 ~g~~~vkIv~Sn~Lde--~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
.+|++++++.+||+++ +.+.++.+.| +.++|+|+.|+.
T Consensus 154 ~p~p~i~~~ptGGV~~~~~n~~~yl~aG--a~avg~Gs~L~~ 193 (222)
T PRK07114 154 GPMPWTKIMPTGGVEPTEENLKKWFGAG--VTCVGMGSKLIP 193 (222)
T ss_pred ccCCCCeEEeCCCCCcchhcHHHHHhCC--CEEEEEChhhcC
Confidence 4789999999999998 8999999855 789999999974
No 38
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=83.55 E-value=1.6 Score=34.17 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=31.5
Q ss_pred CceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccC
Q psy15542 89 AELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 89 ~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
.+++|++.||++.+.+.++.+.| +|++.+|+.+...
T Consensus 149 ~~~pv~a~GGi~~~~i~~~~~~G--a~~i~~g~~i~~~ 184 (196)
T cd00564 149 VEIPVVAIGGITPENAAEVLAAG--ADGVAVISAITGA 184 (196)
T ss_pred CCCCEEEECCCCHHHHHHHHHcC--CCEEEEehHhhcC
Confidence 45789999999999999999866 6999999999754
No 39
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.32 E-value=1.7 Score=35.74 Aligned_cols=37 Identities=11% Similarity=0.269 Sum_probs=32.1
Q ss_pred CCCceeEEEeCCCCHHHHHHHHHcCCceeEeeecccccc
Q psy15542 87 WFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 87 g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
.++++++++.||++.+.+.++.+.| +++.|+|+.|..
T Consensus 149 ~~~~ipvvaiGGI~~~n~~~~l~aG--a~~vav~s~i~~ 185 (187)
T PRK07455 149 PLGHIPLIPTGGVTLENAQAFIQAG--AIAVGLSGQLFP 185 (187)
T ss_pred hCCCCcEEEeCCCCHHHHHHHHHCC--CeEEEEehhccc
Confidence 3557899999999999999999965 689999999864
No 40
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=82.15 E-value=1.1 Score=37.65 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=32.1
Q ss_pred CCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccC
Q psy15542 85 IPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 85 ~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
..+|++++++.+||++++-+.++.+.| ..+.|+|+.|+..
T Consensus 143 ~~p~p~~~~~ptGGV~~~N~~~~l~ag--~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 143 RGPFPDLPFMPTGGVNPDNLAEYLKAG--AVAVGGGSWLFPK 182 (196)
T ss_dssp HTTTTT-EEEEBSS--TTTHHHHHTST--TBSEEEESGGGSH
T ss_pred hccCCCCeEEEcCCCCHHHHHHHHhCC--CEEEEECchhcCH
Confidence 357999999999999999999999876 4689999999853
No 41
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=81.88 E-value=2 Score=34.43 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=31.6
Q ss_pred CceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCC
Q psy15542 89 AELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQ 127 (180)
Q Consensus 89 ~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~ 127 (180)
.+++|++.||++++.+.++.+.| ++++.+|+.+....
T Consensus 151 ~~~pv~a~GGI~~~~~~~~~~~G--~~gva~~~~i~~~~ 187 (196)
T TIGR00693 151 IDIPIVAIGGITLENAAEVLAAG--ADGVAVVSAIMQAA 187 (196)
T ss_pred CCCCEEEECCcCHHHHHHHHHcC--CCEEEEhHHhhCCC
Confidence 35789999999999999999865 69999999998643
No 42
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=81.74 E-value=1.9 Score=37.59 Aligned_cols=42 Identities=31% Similarity=0.473 Sum_probs=33.2
Q ss_pred ceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEE
Q psy15542 90 ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVY 136 (180)
Q Consensus 90 ~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~Vy 136 (180)
+++|++|||+|++.+.++.+.| +|.+.+|. +++ ..|++++.+
T Consensus 226 ~ipi~AiGGI~~~ni~~~a~~G--vd~Iav~s-l~~--~a~~~D~sl 267 (268)
T cd01572 226 RVLLEASGGITLENIRAYAETG--VDYISVGA-LTH--SAPALDISL 267 (268)
T ss_pred CCcEEEECCCCHHHHHHHHHcC--CCEEEEEe-eec--CCCccCccC
Confidence 5789999999999999999866 68888887 433 356777654
No 43
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=81.54 E-value=2.5 Score=34.20 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=30.1
Q ss_pred ceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccC
Q psy15542 90 ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 90 ~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
..+|.+.||++.+.+.++.+.| +|.+.+|+.|...
T Consensus 158 ~~~i~v~GGI~~~n~~~~~~~G--a~~v~vGsai~~~ 192 (206)
T TIGR03128 158 EARVAVAGGINLDTIPDVIKLG--PDIVIVGGAITKA 192 (206)
T ss_pred CCcEEEECCcCHHHHHHHHHcC--CCEEEEeehhcCC
Confidence 4568889999999999999866 6899999999764
No 44
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=79.78 E-value=2.6 Score=33.90 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=31.1
Q ss_pred CceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccC
Q psy15542 89 AELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 89 ~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
++++|++-||++.+.+.++.+.| +|++++|+.+..+
T Consensus 159 ~~~~v~a~GGI~~~~i~~~~~~G--a~gv~~gs~i~~~ 194 (212)
T PRK00043 159 GDIPIVAIGGITPENAPEVLEAG--ADGVAVVSAITGA 194 (212)
T ss_pred CCCCEEEECCcCHHHHHHHHHcC--CCEEEEeHHhhcC
Confidence 34889999999999999999866 6889999999754
No 45
>PRK07695 transcriptional regulator TenI; Provisional
Probab=79.06 E-value=2.5 Score=34.44 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=31.1
Q ss_pred ceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccC
Q psy15542 90 ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 90 ~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
+++|++.||++++.+.++.+.| +|+++||+.+...
T Consensus 149 ~ipvia~GGI~~~~~~~~~~~G--a~gvav~s~i~~~ 183 (201)
T PRK07695 149 SIPVIAIGGITPENTRDVLAAG--VSGIAVMSGIFSS 183 (201)
T ss_pred CCCEEEEcCCCHHHHHHHHHcC--CCEEEEEHHHhcC
Confidence 5789999999999999999865 6999999999854
No 46
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=77.34 E-value=3.3 Score=34.68 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=32.3
Q ss_pred CCC-ceeEEEeCCCCHHHHHHHHHcCCceeEeeecccccc
Q psy15542 87 WFA-ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 87 g~~-~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
.++ ++++++.||++++.+.++.+.| .+++++|+.|..
T Consensus 147 ~~~~~ipvvaiGGI~~~n~~~~~~aG--a~~vav~s~l~~ 184 (206)
T PRK09140 147 VLPPDVPVFAVGGVTPENLAPYLAAG--AAGFGLGSALYR 184 (206)
T ss_pred hcCCCCeEEEECCCCHHHHHHHHHCC--CeEEEEehHhcc
Confidence 444 6899999999999999999966 689999999975
No 47
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=77.19 E-value=3.4 Score=35.43 Aligned_cols=38 Identities=16% Similarity=0.355 Sum_probs=34.6
Q ss_pred CCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeecccccc
Q psy15542 86 PWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 86 ~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
-++++++++.+||+++.-+.+....| +.++|+|+.|+.
T Consensus 149 gP~~~v~~~pTGGVs~~N~~~yla~g--v~avG~Gs~l~~ 186 (211)
T COG0800 149 GPFPQVRFCPTGGVSLDNAADYLAAG--VVAVGLGSWLVP 186 (211)
T ss_pred CCCCCCeEeecCCCCHHHHHHHHhCC--ceEEecCccccC
Confidence 46888999999999999999999876 899999999984
No 48
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=76.81 E-value=7.9 Score=30.28 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=45.3
Q ss_pred HHHHHHHHHHCCCCeEEeeeecc---cc------ccCCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeecccccc
Q psy15542 57 LAALISYAIAFPDGFMALVDTYD---VK------RYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 57 ~~Af~aya~~fP~~~i~LvDTYd---~~------~Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
.+..++..+.-+ ..++|.=+.+ .. .|...+..+++|++-|.+-.+...+|.+.|. -..|+.||++..
T Consensus 43 e~~v~aa~e~~a-dii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv-d~~~~~gt~~~~ 118 (132)
T TIGR00640 43 EEIARQAVEADV-HVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV-AEIFGPGTPIPE 118 (132)
T ss_pred HHHHHHHHHcCC-CEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC-CEEECCCCCHHH
Confidence 344444444444 4555543332 22 6777788888899988888888999998774 248999998753
No 49
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=76.73 E-value=2.8 Score=34.61 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=30.7
Q ss_pred ceeEEEeCCC-CHHHHHHHHHcCCceeEeeeccccccC
Q psy15542 90 ELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 90 ~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
+++|++.+|+ +.+.+.++.+.| .|+++|||.|+..
T Consensus 177 ~ipvia~GGI~~~~~~~~~l~~G--adgV~vGsal~~~ 212 (219)
T cd04729 177 GIPVIAEGRINSPEQAAKALELG--ADAVVVGSAITRP 212 (219)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCC--CCEEEEchHHhCh
Confidence 5789999999 799999999877 7999999999754
No 50
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.57 E-value=5.7 Score=35.03 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=46.5
Q ss_pred HHHHHHHHHHCCCCeEEeeeeccccccCC----CCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcc
Q psy15542 57 LAALISYAIAFPDGFMALVDTYDVKRYNI----PWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPAL 132 (180)
Q Consensus 57 ~~Af~aya~~fP~~~i~LvDTYd~~~Ld~----~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~L 132 (180)
.+|.++. ...-+.++| |..+...+.. .. .++.|++|||+|++.+.++.+.| +|.+-+|. |++ ..|++
T Consensus 199 eea~~A~--~~gaDyI~l-D~~~~e~l~~~~~~~~-~~i~i~AiGGIt~~ni~~~a~~G--vd~IAvg~-l~~--sa~~~ 269 (277)
T PRK08072 199 EQVREAV--AAGADIIMF-DNRTPDEIREFVKLVP-SAIVTEASGGITLENLPAYGGTG--VDYISLGF-LTH--SVKAL 269 (277)
T ss_pred HHHHHHH--HcCCCEEEE-CCCCHHHHHHHHHhcC-CCceEEEECCCCHHHHHHHHHcC--CCEEEECh-hhc--CCccc
Confidence 3444442 243345555 7665551110 01 24568899999999999999976 67787776 544 35888
Q ss_pred eeEEEE
Q psy15542 133 GCVYKL 138 (180)
Q Consensus 133 g~VyKL 138 (180)
++-+++
T Consensus 270 D~~~~~ 275 (277)
T PRK08072 270 DISFNI 275 (277)
T ss_pred ceEEEc
Confidence 887765
No 51
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.70 E-value=8 Score=34.65 Aligned_cols=63 Identities=22% Similarity=0.382 Sum_probs=44.1
Q ss_pred EEeeeecccccc----CCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEEeE
Q psy15542 72 MALVDTYDVKRY----NIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLVE 140 (180)
Q Consensus 72 i~LvDTYd~~~L----d~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKLVe 140 (180)
+.+.|-++...+ ..- -.++.|-+|||+|++.+.++.+.| +|..=+|. |++ ..|++++.+++.|
T Consensus 228 iImLDnmspe~l~~av~~~-~~~~~lEaSGGIt~~ni~~yA~tG--VD~IS~ga-lth--sa~~lD~sl~~~~ 294 (294)
T PRK06978 228 SVLLDNFTLDMMREAVRVT-AGRAVLEVSGGVNFDTVRAFAETG--VDRISIGA-LTK--DVRATDYSMRIVE 294 (294)
T ss_pred EEEECCCCHHHHHHHHHhh-cCCeEEEEECCCCHHHHHHHHhcC--CCEEEeCc-ccc--CCcccceEEeccC
Confidence 567798877711 111 126789999999999999999877 45555553 443 3689999888653
No 52
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=74.54 E-value=17 Score=32.57 Aligned_cols=75 Identities=24% Similarity=0.304 Sum_probs=51.5
Q ss_pred HHHHHHHHHHCCCCeEEeeeecccc-------ccCCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCC
Q psy15542 57 LAALISYAIAFPDGFMALVDTYDVK-------RYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQ 129 (180)
Q Consensus 57 ~~Af~aya~~fP~~~i~LvDTYd~~-------~Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~ 129 (180)
++-++..+++=|+ |.+.|=++.. .++.++ ++.+=+|||++++.|.++.+-| +|.+-+|. |++ ..
T Consensus 198 le~~~eAl~agaD--iImLDNm~~e~~~~av~~l~~~~--~~~lEaSGgIt~~ni~~yA~tG--VD~IS~ga-lth--s~ 268 (280)
T COG0157 198 LEEAEEALEAGAD--IIMLDNMSPEELKEAVKLLGLAG--RALLEASGGITLENIREYAETG--VDVISVGA-LTH--SA 268 (280)
T ss_pred HHHHHHHHHcCCC--EEEecCCCHHHHHHHHHHhccCC--ceEEEEeCCCCHHHHHHHhhcC--CCEEEeCc-ccc--CC
Confidence 3333334444444 5667888777 444443 6779999999999999999866 67666663 333 36
Q ss_pred CcceeEEEEeE
Q psy15542 130 PALGCVYKLVE 140 (180)
Q Consensus 130 p~Lg~VyKLVe 140 (180)
|.|++.+++..
T Consensus 269 ~~lDisl~~~~ 279 (280)
T COG0157 269 PALDISLDIVR 279 (280)
T ss_pred cccceEEEeec
Confidence 88999988764
No 53
>KOG2511|consensus
Probab=73.89 E-value=1.5 Score=40.65 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=35.6
Q ss_pred Ccce-eEEEEeEEcCcceeeecCCCCcccC-Ccceeeeeeehh
Q psy15542 130 PALG-CVYKLVEINGMPRIKLSQDVGKVAV-SDHLYSFIHELW 170 (180)
Q Consensus 130 p~Lg-~VyKLVei~G~P~~KlS~~~~K~T~-Pg~v~r~~~~l~ 170 (180)
-|.+ +||+|-..||.|.||+|+..+|.+. ||++.|+.+-+-
T Consensus 356 iP~~K~~~RLfg~eG~plvdi~~~~~ep~p~~gq~l~~khp~~ 398 (420)
T KOG2511|consen 356 IPGNKIVIRLFGKEGYPLVDISDLENEPPPDPGQVLRVKHPLN 398 (420)
T ss_pred cccchhheehhccCCchhhhHhhccCCCCCCCCceEEeecccc
Confidence 4666 9999999999999999999999887 889888876654
No 54
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=70.16 E-value=5.5 Score=32.84 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=29.7
Q ss_pred ceeEEEeCCC-CHHHHHHHHHcCCceeEeeecccccc
Q psy15542 90 ELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 90 ~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
++++++.+|+ +.+.+.++.+.| .|++.|||.|+.
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~~G--adgV~iGsai~~ 207 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALELG--AHAVVVGGAITR 207 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHHCC--CCEEEEchHhcC
Confidence 5779999999 699999999876 699999999874
No 55
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.61 E-value=6.1 Score=33.35 Aligned_cols=38 Identities=8% Similarity=-0.053 Sum_probs=31.9
Q ss_pred CCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeecccccc
Q psy15542 86 PWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 86 ~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
.+|++++++.+||++.+.+.++.+.|.- ..|.|+.|+.
T Consensus 140 ~plp~~~l~ptGGV~~~n~~~~l~ag~~--~~~ggs~l~~ 177 (201)
T PRK06015 140 SPLAGTFFCPTGGISLKNARDYLSLPNV--VCVGGSWVAP 177 (201)
T ss_pred hhCCCCcEEecCCCCHHHHHHHHhCCCe--EEEEchhhCC
Confidence 4789999999999999999999997642 5566888874
No 56
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=68.49 E-value=33 Score=31.01 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=42.8
Q ss_pred eEEeeeec---------ccccc----CCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEE
Q psy15542 71 FMALVDTY---------DVKRY----NIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYK 137 (180)
Q Consensus 71 ~i~LvDTY---------d~~~L----d~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyK 137 (180)
-+.+.|.+ +...+ ..-. .+..|-+|||+|++.|.++.+.| +|..=+|. |++ ..|++++..+
T Consensus 231 DiImLDnm~~~~~~~~~~~e~l~~av~~~~-~~~~lEaSGGIt~~ni~~yA~tG--VD~Is~Ga-lth--sa~~~Disl~ 304 (308)
T PLN02716 231 TRVMLDNMVVPLENGDVDVSMLKEAVELIN-GRFETEASGNVTLDTVHKIGQTG--VTYISSGA-LTH--SVKALDISLK 304 (308)
T ss_pred CEEEeCCCcccccccCCCHHHHHHHHHhhC-CCceEEEECCCCHHHHHHHHHcC--CCEEEeCc-ccc--CCCccceEEE
Confidence 46778999 55511 1111 24569999999999999999877 55555553 443 3688998887
Q ss_pred E
Q psy15542 138 L 138 (180)
Q Consensus 138 L 138 (180)
+
T Consensus 305 i 305 (308)
T PLN02716 305 I 305 (308)
T ss_pred E
Confidence 7
No 57
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.06 E-value=26 Score=31.10 Aligned_cols=58 Identities=19% Similarity=0.367 Sum_probs=42.0
Q ss_pred EEeeeecccc-------ccCCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEE
Q psy15542 72 MALVDTYDVK-------RYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKL 138 (180)
Q Consensus 72 i~LvDTYd~~-------~Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKL 138 (180)
+.+.|-++.. .+. .+..|-+|||+|++.+.++.+.| +|..=+|. |++ ..|++++.+++
T Consensus 216 iImLDn~s~e~l~~av~~~~----~~~~leaSGgI~~~ni~~yA~tG--VD~Is~ga-lth--s~~~~D~sl~i 280 (281)
T PRK06543 216 TIMLDNFSLDDLREGVELVD----GRAIVEASGNVNLNTVGAIASTG--VDVISVGA-LTH--SVRALDLGLDI 280 (281)
T ss_pred EEEECCCCHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHhcC--CCEEEeCc-ccc--CCcccceeeec
Confidence 5666888776 222 34579999999999999999876 56665554 443 36888888764
No 58
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=65.87 E-value=26 Score=30.20 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=26.7
Q ss_pred EEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCC
Q psy15542 93 IVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQR 128 (180)
Q Consensus 93 Iv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~ 128 (180)
|..||..+.+.+..+.+.| +|++-|||.|+...+
T Consensus 215 IaegGI~t~ed~~~~~~~G--ad~vlVGsaI~~~~d 248 (260)
T PRK00278 215 VSESGIFTPEDLKRLAKAG--ADAVLVGESLMRADD 248 (260)
T ss_pred EEEeCCCCHHHHHHHHHcC--CCEEEECHHHcCCCC
Confidence 4445555899999999876 599999999986543
No 59
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=63.82 E-value=11 Score=30.17 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=29.1
Q ss_pred eeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccC
Q psy15542 91 LQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 91 vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
+.|++.|||+.+.+.++.+.| +|.+-||+.+...
T Consensus 166 ~~i~v~GGI~~env~~l~~~g--ad~iivgsai~~~ 199 (210)
T TIGR01163 166 ILIEVDGGVNDDNARELAEAG--ADILVAGSAIFGA 199 (210)
T ss_pred ceEEEECCcCHHHHHHHHHcC--CCEEEEChHHhCC
Confidence 458999999999999998755 5899999999753
No 60
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=61.61 E-value=14 Score=29.52 Aligned_cols=35 Identities=37% Similarity=0.412 Sum_probs=30.3
Q ss_pred eeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCC
Q psy15542 91 LQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQ 127 (180)
Q Consensus 91 vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~ 127 (180)
++|++.||++.+.+.++.+.| +|.+=||+.++...
T Consensus 167 ~pi~v~GGI~~env~~~~~~g--ad~iivgsai~~~~ 201 (211)
T cd00429 167 LLIEVDGGINLETIPLLAEAG--ADVLVAGSALFGSD 201 (211)
T ss_pred eEEEEECCCCHHHHHHHHHcC--CCEEEECHHHhCCC
Confidence 679999999999999999866 58899999998643
No 61
>PLN02334 ribulose-phosphate 3-epimerase
Probab=61.13 E-value=13 Score=31.10 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=30.1
Q ss_pred ceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccC
Q psy15542 90 ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 90 ~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
+.+|++-||++++.+..+.+.| +|.+=+|+.+...
T Consensus 174 ~~~I~a~GGI~~e~i~~l~~aG--ad~vvvgsai~~~ 208 (229)
T PLN02334 174 ELDIEVDGGVGPSTIDKAAEAG--ANVIVAGSAVFGA 208 (229)
T ss_pred CCcEEEeCCCCHHHHHHHHHcC--CCEEEEChHHhCC
Confidence 3579999999999999999866 5889999998753
No 62
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=61.03 E-value=10 Score=28.83 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=25.9
Q ss_pred CceeEEEeCCCCH-HHHHHHHHcCCceeEeeecc
Q psy15542 89 AELQIVASNDINE-ETILSLNEQGHRIDCFGIGT 121 (180)
Q Consensus 89 ~~vkIv~Sn~Lde-~~i~~L~~~g~~id~fGIGT 121 (180)
.+++|++++|++. +.+.++.+.| +|+++||+
T Consensus 169 ~~~pi~~~GGi~~~~~~~~~~~~G--ad~v~vgs 200 (200)
T cd04722 169 SKVPVIAGGGINDPEDAAEALALG--ADGVIVGS 200 (200)
T ss_pred CCCCEEEECCCCCHHHHHHHHHhC--CCEEEecC
Confidence 3567999999988 9999998875 78888885
No 63
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=60.43 E-value=34 Score=25.76 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=34.2
Q ss_pred ccCCCCCCceeEEEeCCCCHHHHHHHHHcCCcee-Eeeeccccc
Q psy15542 82 RYNIPWFAELQIVASNDINEETILSLNEQGHRID-CFGIGTHLV 124 (180)
Q Consensus 82 ~Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id-~fGIGT~Lv 124 (180)
+|...+.++++|++.|..-.+...+|.+.| +| .|+.||..-
T Consensus 73 ~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G--~d~~~~~~~~~~ 114 (122)
T cd02071 73 LLRELGAGDILVVGGGIIPPEDYELLKEMG--VAEIFGPGTSIE 114 (122)
T ss_pred HHHhcCCCCCEEEEECCCCHHHHHHHHHCC--CCEEECCCCCHH
Confidence 677778889999999988888899999987 66 889888753
No 64
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=60.32 E-value=20 Score=28.36 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=29.1
Q ss_pred CCCCceeEEEeCCCC------HHHHHHHHHcCCceeEeeecccc
Q psy15542 86 PWFAELQIVASNDIN------EETILSLNEQGHRIDCFGIGTHL 123 (180)
Q Consensus 86 ~g~~~vkIv~Sn~Ld------e~~i~~L~~~g~~id~fGIGT~L 123 (180)
++.+++-|+++||.+ ++.+..+++.|..+-+.|||+..
T Consensus 101 ~~~~kv~illTDG~~~~~~~~~~~~~~~k~~gv~v~~Vgvg~~~ 144 (177)
T cd01469 101 KDATKVLVVITDGESHDDPLLKDVIPQAEREGIIRYAIGVGGHF 144 (177)
T ss_pred CCCCeEEEEEeCCCCCCccccHHHHHHHHHCCcEEEEEEecccc
Confidence 346677788888875 44577788888888899999874
No 65
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=58.85 E-value=16 Score=29.63 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=29.7
Q ss_pred eeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCC
Q psy15542 91 LQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQ 127 (180)
Q Consensus 91 vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~ 127 (180)
..|.+-|||+++.+.++.+.| +|++=||+.++...
T Consensus 171 ~~i~v~GGI~~~nv~~l~~~G--aD~vvvgSai~~~~ 205 (220)
T PRK05581 171 ILIEVDGGINADNIKECAEAG--ADVFVAGSAVFGAP 205 (220)
T ss_pred ceEEEECCCCHHHHHHHHHcC--CCEEEEChhhhCCC
Confidence 447899999999999999855 69999999998644
No 66
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=58.55 E-value=22 Score=28.95 Aligned_cols=35 Identities=11% Similarity=0.292 Sum_probs=27.4
Q ss_pred CCceeEEEeCCCCH--------HHHHHHHHcCCceeEeeeccc
Q psy15542 88 FAELQIVASNDINE--------ETILSLNEQGHRIDCFGIGTH 122 (180)
Q Consensus 88 ~~~vkIv~Sn~Lde--------~~i~~L~~~g~~id~fGIGT~ 122 (180)
.+++-|+++||-+- +..+.|+++|..+-+.|||+.
T Consensus 108 ~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~ 150 (192)
T cd01473 108 APKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAA 150 (192)
T ss_pred CCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccc
Confidence 47777999999873 335567888999999999963
No 67
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=58.16 E-value=39 Score=26.63 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCCCeEEeeeecccc---------ccCCCCCCceeEEEeCCCC------HHHHHHHHHcCCceeEeeecc
Q psy15542 57 LAALISYAIAFPDGFMALVDTYDVK---------RYNIPWFAELQIVASNDIN------EETILSLNEQGHRIDCFGIGT 121 (180)
Q Consensus 57 ~~Af~aya~~fP~~~i~LvDTYd~~---------~Ld~~g~~~vkIv~Sn~Ld------e~~i~~L~~~g~~id~fGIGT 121 (180)
.+.|..-|..+.-..++|.=...+- .|...|+.+++|++-|.+- ++...+|++.|. -..||-||
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv-~~vf~pgt 117 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGF-DRVFAPGT 117 (128)
T ss_pred HHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCC-CEEECcCC
Confidence 4555555555544466554433222 7788888889999999973 455677888774 23899999
Q ss_pred cccc
Q psy15542 122 HLVT 125 (180)
Q Consensus 122 ~Lvt 125 (180)
.+..
T Consensus 118 ~~~~ 121 (128)
T cd02072 118 PPEE 121 (128)
T ss_pred CHHH
Confidence 7653
No 68
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.31 E-value=30 Score=30.95 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=41.7
Q ss_pred EEeeeecccc-------ccCCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEEEE
Q psy15542 72 MALVDTYDVK-------RYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKL 138 (180)
Q Consensus 72 i~LvDTYd~~-------~Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~VyKL 138 (180)
+.+.|-++.. .+. .++.|-+|||+|++.+.++.+.| +|..=+|. |++ ..|++++.+|.
T Consensus 220 iImLDnmspe~l~~av~~~~----~~~~leaSGGI~~~ni~~yA~tG--VD~Is~ga-lth--sa~~~Disl~~ 284 (290)
T PRK06559 220 IIMLDNMSLEQIEQAITLIA----GRSRIECSGNIDMTTISRFRGLA--IDYVSSGS-LTH--SAKSLDFSMKG 284 (290)
T ss_pred EEEECCCCHHHHHHHHHHhc----CceEEEEECCCCHHHHHHHHhcC--CCEEEeCc-ccc--CCcccceeeec
Confidence 5667888776 222 26789999999999999999877 45555553 443 36788886664
No 69
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=55.07 E-value=44 Score=28.44 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=29.6
Q ss_pred eEEeeeecccc-------ccCC---CC-CCceeEEEeCCCCHHHHHHHHHcCCc
Q psy15542 71 FMALVDTYDVK-------RYNI---PW-FAELQIVASNDINEETILSLNEQGHR 113 (180)
Q Consensus 71 ~i~LvDTYd~~-------~Ld~---~g-~~~vkIv~Sn~Lde~~i~~L~~~g~~ 113 (180)
-..|+|++... .||- +. ..+.+++.+||||.+-+.+..+.+.|
T Consensus 124 d~~LlDa~~~~~~GGtG~~fDW~~l~~~~~~~~~~LAGGL~p~NV~~ai~~~~p 177 (208)
T COG0135 124 DAILLDAKVPGLPGGTGQTFDWNLLPKLRLSKPVMLAGGLNPDNVAEAIALGPP 177 (208)
T ss_pred cEEEEcCCCCCCCCCCCcEECHHHhccccccCCEEEECCCCHHHHHHHHHhcCC
Confidence 46888997432 2221 11 24456999999999999999987654
No 70
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=53.89 E-value=20 Score=30.36 Aligned_cols=34 Identities=18% Similarity=0.421 Sum_probs=29.6
Q ss_pred ceeEEEeCCCCHHHHHHHHHcCCceeEeeecccccc
Q psy15542 90 ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 90 ~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
+++|.+=||+|++.+..+.+.| +|.|=+||.+..
T Consensus 167 ~~~I~vdGGI~~eni~~l~~aG--Ad~vVvGSaIf~ 200 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIAEAG--ADMFVAGSAIFG 200 (220)
T ss_pred CeeEEEECCCCHHHHHHHHHcC--CCEEEEeHHHhC
Confidence 4679999999999999999866 588999999874
No 71
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=51.63 E-value=18 Score=33.60 Aligned_cols=35 Identities=11% Similarity=0.287 Sum_probs=30.3
Q ss_pred ceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccC
Q psy15542 90 ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 90 ~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
+++|.++||++++.+..+.+.| +|.+-+|+.++.+
T Consensus 330 ~~~I~VdGGI~~eti~~l~~aG--ADivVVGsaIf~a 364 (391)
T PRK13307 330 KILVAVAGGVRVENVEEALKAG--ADILVVGRAITKS 364 (391)
T ss_pred CCcEEEECCcCHHHHHHHHHcC--CCEEEEeHHHhCC
Confidence 4679999999999999999876 4789999998754
No 72
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=51.29 E-value=77 Score=27.42 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=31.2
Q ss_pred eeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCC
Q psy15542 91 LQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQR 128 (180)
Q Consensus 91 vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~ 128 (180)
.++.+-|||+++++..+...| ++.|=||..++.+.+
T Consensus 165 ~~vAVaGGI~~~~i~~~~~~~--~~ivIvGraIt~a~d 200 (217)
T COG0269 165 AKVAVAGGITPEDIPLFKGIG--ADIVIVGRAITGAKD 200 (217)
T ss_pred ceEEEecCCCHHHHHHHhcCC--CCEEEECchhcCCCC
Confidence 679999999999999999866 678999999987653
No 73
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=51.07 E-value=19 Score=29.42 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=33.2
Q ss_pred ceeEEEeCCCCH-HHHHHHHHcCCceeEeeeccccccCCCCCcc
Q psy15542 90 ELQIVASNDINE-ETILSLNEQGHRIDCFGIGTHLVTCQRQPAL 132 (180)
Q Consensus 90 ~vkIv~Sn~Lde-~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~L 132 (180)
+++|++.+|++. +.+.++.+.| .|++.||+.+......|..
T Consensus 156 ~~Pvi~~GGI~~~~~v~~~l~~G--adgV~vgS~l~~~~e~~~~ 197 (236)
T cd04730 156 DIPVIAAGGIADGRGIAAALALG--ADGVQMGTRFLATEESGAS 197 (236)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CcEEEEchhhhcCcccCCC
Confidence 567999999987 8899977754 7999999999977665433
No 74
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=49.86 E-value=62 Score=25.32 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=44.4
Q ss_pred HHHHHHHHHHCCCCeEEeeeecccc---------ccCCCCCCceeEEEeCCC------CHHHHHHHHHcCCcee-Eeeec
Q psy15542 57 LAALISYAIAFPDGFMALVDTYDVK---------RYNIPWFAELQIVASNDI------NEETILSLNEQGHRID-CFGIG 120 (180)
Q Consensus 57 ~~Af~aya~~fP~~~i~LvDTYd~~---------~Ld~~g~~~vkIv~Sn~L------de~~i~~L~~~g~~id-~fGIG 120 (180)
.+.|.+-++...-..++|.=..... +|...+..+++|++.|.+ .++...+|.+.| +| .|+=|
T Consensus 43 ~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G--~~~vf~~~ 120 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMG--FDRVFPPG 120 (137)
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcC--CCEEECcC
Confidence 4455555555544466554322111 677778888999999998 577778888877 45 89988
Q ss_pred cccc
Q psy15542 121 THLV 124 (180)
Q Consensus 121 T~Lv 124 (180)
|.+.
T Consensus 121 ~~~~ 124 (137)
T PRK02261 121 TDPE 124 (137)
T ss_pred CCHH
Confidence 8764
No 75
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=49.68 E-value=55 Score=28.98 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=38.1
Q ss_pred EEeeeecccc-------ccCCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCCCCcceeE
Q psy15542 72 MALVDTYDVK-------RYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCV 135 (180)
Q Consensus 72 i~LvDTYd~~-------~Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~V 135 (180)
+.+.|-++.. .+. ...+++.|-+|||+|++.+.++.+.| +|.+=+|. +.+ .+|+++-
T Consensus 211 iI~lDn~~~e~l~~~v~~l~-~~~~~~~leasGGI~~~ni~~ya~~G--vD~is~ga-l~~---a~~~Di~ 274 (277)
T TIGR01334 211 ILQLDKFTPQQLHHLHERLK-FFDHIPTLAAAGGINPENIADYIEAG--IDLFITSA-PYY---AAPCDIK 274 (277)
T ss_pred EEEECCCCHHHHHHHHHHHh-ccCCCEEEEEECCCCHHHHHHHHhcC--CCEEEeCc-cee---cCccceE
Confidence 5666776655 232 22456789999999999999999876 56665554 332 4566654
No 76
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=49.39 E-value=25 Score=31.07 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=24.6
Q ss_pred CCCceeEEEeCCCCHHHHHHHHH---cCCcee-Eeeeccc
Q psy15542 87 WFAELQIVASNDINEETILSLNE---QGHRID-CFGIGTH 122 (180)
Q Consensus 87 g~~~vkIv~Sn~Lde~~i~~L~~---~g~~id-~fGIGT~ 122 (180)
++.++ |+++|||+++...++.+ .-.|+. ..|||+.
T Consensus 53 RgDN~-iavtNGI~~~~~~~i~e~I~n~~PV~ls~GIG~g 91 (254)
T PRK02240 53 RFDNM-IAVTNGIDLEDHARIQESIRNRYPVTVSMGIGTA 91 (254)
T ss_pred cCceE-EEEcCCCCHHHHHHHHHHHHhcCCCceEEEEEec
Confidence 56677 99999999997777764 344554 5555554
No 77
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=48.41 E-value=77 Score=25.70 Aligned_cols=38 Identities=3% Similarity=0.025 Sum_probs=30.6
Q ss_pred ceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCCC
Q psy15542 90 ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQR 128 (180)
Q Consensus 90 ~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~~ 128 (180)
++++++.||||.+.+.++.+.+. .+++-|+|.+-+..+
T Consensus 152 ~~PvilaGGI~~~Nv~~~i~~~~-~~gvdv~S~ie~~pg 189 (203)
T cd00405 152 RKPVILAGGLTPDNVAEAIRLVR-PYGVDVSSGVETSPG 189 (203)
T ss_pred CCCEEEECCCChHHHHHHHHhcC-CCEEEcCCcccCCCC
Confidence 56899999999999999998764 467778888765433
No 78
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=46.61 E-value=24 Score=29.02 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=26.5
Q ss_pred CCCCceeEEEeCC------CCH-HHHHHHHHcCCceeEeeeccc
Q psy15542 86 PWFAELQIVASND------INE-ETILSLNEQGHRIDCFGIGTH 122 (180)
Q Consensus 86 ~g~~~vkIv~Sn~------Lde-~~i~~L~~~g~~id~fGIGT~ 122 (180)
++.+++-|++++| -+. ....+|+++|..|-++|||+.
T Consensus 129 ~~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~~ 172 (193)
T cd01477 129 ENYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQD 172 (193)
T ss_pred CCCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCCC
Confidence 3457766888864 233 446678888999999999985
No 79
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=44.35 E-value=29 Score=28.36 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=30.3
Q ss_pred CceeEEEeCCCC-HHHHHHHHHcCCceeEeeeccccccCC
Q psy15542 89 AELQIVASNDIN-EETILSLNEQGHRIDCFGIGTHLVTCQ 127 (180)
Q Consensus 89 ~~vkIv~Sn~Ld-e~~i~~L~~~g~~id~fGIGT~Lvt~~ 127 (180)
.++++++++|++ .+.+.++.+.| +|++-||+.|+...
T Consensus 171 ~~~pvia~gGI~s~edi~~~~~~G--a~gvivGsai~~~~ 208 (217)
T cd00331 171 KDVILVSESGISTPEDVKRLAEAG--ADAVLIGESLMRAP 208 (217)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcC--CCEEEECHHHcCCC
Confidence 456799999995 59999999865 68999999998644
No 80
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=43.99 E-value=25 Score=22.96 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=17.0
Q ss_pred CCCCcceeEEEEeEEcCcceeeecCCCCcccC--Ccceee
Q psy15542 127 QRQPALGCVYKLVEINGMPRIKLSQDVGKVAV--SDHLYS 164 (180)
Q Consensus 127 ~~~p~Lg~VyKLVei~G~P~~KlS~~~~K~T~--Pg~v~r 164 (180)
..+++.|+-| |-+||+.+++= ++.|. ||++.|
T Consensus 13 p~~~~~GI~~--V~VNG~~vv~~----g~~t~~~~G~~lr 46 (48)
T PF07908_consen 13 PNQPAEGIDY--VFVNGQIVVED----GEVTGARPGRVLR 46 (48)
T ss_dssp TT---BSEEE--EEETTEEEECT----TEESSS----B--
T ss_pred ccccCCCEEE--EEECCEEEEEC----CeECCCCCCeEec
Confidence 4578888776 77899999865 44444 887655
No 81
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=42.11 E-value=44 Score=32.76 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=28.1
Q ss_pred CCCceeEEEeCCCCH------HHHHHHHHcCCceeEeeeccc
Q psy15542 87 WFAELQIVASNDINE------ETILSLNEQGHRIDCFGIGTH 122 (180)
Q Consensus 87 g~~~vkIv~Sn~Lde------~~i~~L~~~g~~id~fGIGT~ 122 (180)
...++-|++|+|.+. +.++.|++.|+.|-++|||..
T Consensus 148 nvpKVVILLTDG~sns~~dvleaAq~LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 148 NAIQLVILMTDGIPNSKYRALEESRKLKDRNVKLAVIGIGQG 189 (576)
T ss_pred CCceEEEEEecCCCCCcccHHHHHHHHHHCCCEEEEEEeCCC
Confidence 445777999999962 235778888999999999963
No 82
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=40.19 E-value=24 Score=29.24 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=32.0
Q ss_pred eeeccccccCCCCCCceeEEEeCCCCHHHHHHHHHcCCc-eeEeee
Q psy15542 75 VDTYDVKRYNIPWFAELQIVASNDINEETILSLNEQGHR-IDCFGI 119 (180)
Q Consensus 75 vDTYd~~~Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~-id~fGI 119 (180)
+|++.+..-+.++..++.|++++ |+..++++.+|-+. ||.++|
T Consensus 32 IeSltv~~tE~~~~SRiTivv~g--~~~~~EQi~kQL~kLidV~kV 75 (163)
T COG0440 32 IESLTVGPTETPGLSRITIVVSG--DEQVLEQIIKQLNKLIDVLKV 75 (163)
T ss_pred cceEEEEecCCCCceEEEEEEcC--CcchHHHHHHHHHhhccceeE
Confidence 34444445556788999999999 88888888887665 777766
No 83
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=39.98 E-value=52 Score=28.05 Aligned_cols=34 Identities=15% Similarity=0.380 Sum_probs=29.8
Q ss_pred ceeEEEeCCCCHHHHHHHHHcCCceeEeeecccccc
Q psy15542 90 ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 90 ~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
+++|-+-||+|++++..+.+.|+ |.|=+|+.+..
T Consensus 171 ~~~IeVDGGI~~eti~~l~~aGa--Di~V~GSaiF~ 204 (223)
T PRK08745 171 PIRLEIDGGVKADNIGAIAAAGA--DTFVAGSAIFN 204 (223)
T ss_pred CeeEEEECCCCHHHHHHHHHcCC--CEEEEChhhhC
Confidence 47799999999999999999775 88888999875
No 84
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=39.67 E-value=45 Score=28.14 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=29.6
Q ss_pred ceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccC
Q psy15542 90 ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 90 ~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
++.|.+-||++++++..+.+.|+ |.+=+|+.+...
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~aGa--d~iVvGsaI~~a 207 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAADAGA--NVIVAGSSIFKA 207 (228)
T ss_pred cCeEEECCCCCHHHHHHHHHcCC--CEEEEchHHhCC
Confidence 46799999999999999999775 778889988643
No 85
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=39.34 E-value=40 Score=30.87 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=30.9
Q ss_pred ceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccC
Q psy15542 90 ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 90 ~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
+++|++.+|++.+.+.++.+.| +|.+.+|+.|...
T Consensus 162 ~iPI~a~GGI~~~n~~~~l~aG--Adgv~vGsaI~~~ 196 (430)
T PRK07028 162 SIPIAVAGGLDAETAAKAVAAG--ADIVIVGGNIIKS 196 (430)
T ss_pred CCcEEEECCCCHHHHHHHHHcC--CCEEEEChHHcCC
Confidence 3779999999999999999877 5899999999854
No 86
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=39.16 E-value=19 Score=28.10 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=24.4
Q ss_pred CceeEEEeCCCCH-------------HH---HHHHHHcCCceeEeeecccccc
Q psy15542 89 AELQIVASNDINE-------------ET---ILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 89 ~~vkIv~Sn~Lde-------------~~---i~~L~~~g~~id~fGIGT~Lvt 125 (180)
.++-|++|||.+. +. ++++.+.|..+-+.|||+...+
T Consensus 104 ~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~~ 156 (174)
T cd01454 104 RKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDATT 156 (174)
T ss_pred CcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCcccc
Confidence 4444677777653 22 5666677777888899987753
No 87
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=39.03 E-value=20 Score=33.02 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.4
Q ss_pred HHHHHHHcCCceeEeeeccccccC
Q psy15542 103 TILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 103 ~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
-|..|.++|+|||+.|+=.||...
T Consensus 209 lI~~LkekG~pIDgiG~QsH~~~~ 232 (345)
T COG3693 209 LIEELKEKGAPIDGIGIQSHFSGD 232 (345)
T ss_pred HHHHHHHCCCCccceeeeeeecCC
Confidence 578899999999999999998765
No 88
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=38.86 E-value=1.1e+02 Score=26.99 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=25.9
Q ss_pred EEEeCCCC-HHHHHHHHHcCCceeEeeeccccccCCC
Q psy15542 93 IVASNDIN-EETILSLNEQGHRIDCFGIGTHLVTCQR 128 (180)
Q Consensus 93 Iv~Sn~Ld-e~~i~~L~~~g~~id~fGIGT~Lvt~~~ 128 (180)
+|.-+|+. .+.+..+.+.| +|+|=|||+|....+
T Consensus 210 ~IsESGI~~~~dv~~l~~~g--a~a~LVG~slM~~~~ 244 (254)
T COG0134 210 LISESGISTPEDVRRLAKAG--ADAFLVGEALMRADD 244 (254)
T ss_pred EEecCCCCCHHHHHHHHHcC--CCEEEecHHHhcCCC
Confidence 44445555 99999999865 699999999986543
No 89
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=38.58 E-value=65 Score=25.20 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=25.8
Q ss_pred CCCceeEEEeCCCCH------HHHHHHHHcCCceeEeeecccc
Q psy15542 87 WFAELQIVASNDINE------ETILSLNEQGHRIDCFGIGTHL 123 (180)
Q Consensus 87 g~~~vkIv~Sn~Lde------~~i~~L~~~g~~id~fGIGT~L 123 (180)
+..++-|+++||-+. +.+.+|++.|..+-.+|||+..
T Consensus 107 ~~~~~villTDG~~~~~~~~~~~a~~l~~~gv~v~~igiG~~~ 149 (186)
T cd01471 107 NAPQLVIIMTDGIPDSKFRTLKEARKLRERGVIIAVLGVGQGV 149 (186)
T ss_pred cCceEEEEEccCCCCCCcchhHHHHHHHHCCCEEEEEEeehhh
Confidence 344555888877652 3467777788888899999754
No 90
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=38.56 E-value=72 Score=28.44 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=31.4
Q ss_pred ceeEEEeCCCC-HHHHHHHHHcCCceeEeeeccccccCCCCCc
Q psy15542 90 ELQIVASNDIN-EETILSLNEQGHRIDCFGIGTHLVTCQRQPA 131 (180)
Q Consensus 90 ~vkIv~Sn~Ld-e~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~ 131 (180)
+++|+++||+. ...+.+....| .|+..+||.|+.+...|.
T Consensus 197 ~vpVIA~GGI~~~~di~kAla~G--A~~VmiGt~fa~t~Es~g 237 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALAAG--ADAVMLGSLLAGTDESPG 237 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHHcC--CCEEEecchhcccccCCC
Confidence 47799999996 56676666666 578999999998877663
No 91
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=38.17 E-value=39 Score=29.01 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=30.1
Q ss_pred ceeEEEeCCC-CHHHHHHHHHcCCceeEeeeccccccC
Q psy15542 90 ELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 90 ~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
++.|+++||+ +.+.+.++.+.| .|..+|||.+...
T Consensus 231 ~ipii~~GGI~~~~da~~~l~~G--Ad~V~igra~l~~ 266 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLMAG--ASAVQVGTANFVD 266 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCEEEEchhhhcC
Confidence 5789999999 789999988877 5999999998753
No 92
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=37.76 E-value=50 Score=25.81 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=22.2
Q ss_pred CceeEEEeCCCCHHH-------HHHHHHcCCceeEeeecccc
Q psy15542 89 AELQIVASNDINEET-------ILSLNEQGHRIDCFGIGTHL 123 (180)
Q Consensus 89 ~~vkIv~Sn~Lde~~-------i~~L~~~g~~id~fGIGT~L 123 (180)
.++-|+.|||.+.+. ++++.+.+..|-+||||+..
T Consensus 108 ~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~~ 149 (176)
T cd01464 108 RPWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPKA 149 (176)
T ss_pred CcEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEecccc
Confidence 344488999886332 23333345678899999854
No 93
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=35.53 E-value=79 Score=25.09 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=26.2
Q ss_pred CCCCceeEEEeCCCC--------HHHHHHHHHcCCceeEeeecc
Q psy15542 86 PWFAELQIVASNDIN--------EETILSLNEQGHRIDCFGIGT 121 (180)
Q Consensus 86 ~g~~~vkIv~Sn~Ld--------e~~i~~L~~~g~~id~fGIGT 121 (180)
++..++-|++|||-+ ++.+..+++.|..|-+.|||.
T Consensus 107 ~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~ 150 (186)
T cd01480 107 QKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS 150 (186)
T ss_pred CCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc
Confidence 456677799999964 233566777888888888887
No 94
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=34.94 E-value=83 Score=24.26 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=23.4
Q ss_pred CCCceeEEEeCCCCHH----HHHHHHHcCCceeEeeecc
Q psy15542 87 WFAELQIVASNDINEE----TILSLNEQGHRIDCFGIGT 121 (180)
Q Consensus 87 g~~~vkIv~Sn~Lde~----~i~~L~~~g~~id~fGIGT 121 (180)
+..++-|++|||-..+ .+..+++.|..+-++|+|.
T Consensus 102 ~~~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g~ 140 (164)
T cd01482 102 GVPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVKD 140 (164)
T ss_pred CCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecCc
Confidence 4556668888877633 3456667777777777775
No 95
>KOG0077|consensus
Probab=34.92 E-value=26 Score=29.67 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHHHCCC--CeEEeeeecccc
Q psy15542 54 DGELAALISYAIAFPD--GFMALVDTYDVK 81 (180)
Q Consensus 54 ~~E~~Af~aya~~fP~--~~i~LvDTYd~~ 81 (180)
++-.+|-+.|.+.||. ..+.|+|.||.+
T Consensus 72 GGH~qArr~wkdyf~~v~~iv~lvda~d~e 101 (193)
T KOG0077|consen 72 GGHLQARRVWKDYFPQVDAIVYLVDAYDQE 101 (193)
T ss_pred ccHHHHHHHHHHHHhhhceeEeeeehhhHH
Confidence 6889999999999995 579999999998
No 96
>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04.
Probab=34.80 E-value=31 Score=22.57 Aligned_cols=21 Identities=38% Similarity=0.533 Sum_probs=18.2
Q ss_pred CHHHHHHHHHcCCceeEeeec
Q psy15542 100 NEETILSLNEQGHRIDCFGIG 120 (180)
Q Consensus 100 de~~i~~L~~~g~~id~fGIG 120 (180)
|++.+..|.+-|.||..||=+
T Consensus 3 d~eV~~~LR~lgePi~lFGE~ 23 (44)
T smart00500 3 DSEVIRRLRELGEPITLFGED 23 (44)
T ss_pred HHHHHHHHHHcCCCeeecCCC
Confidence 678899999999999999854
No 97
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=34.62 E-value=53 Score=26.69 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=31.3
Q ss_pred CCceeEEEeCCC-CHHHHHHHHHcCCceeEeeeccccccCC
Q psy15542 88 FAELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVTCQ 127 (180)
Q Consensus 88 ~~~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt~~ 127 (180)
..+++|+++|++ +.+.+.++.+.+ .+|...+|+-+...+
T Consensus 181 ~~~ipvi~~Ggi~~~~d~~~~l~~~-gad~V~igr~~l~~P 220 (231)
T cd02801 181 AVSIPVIANGDIFSLEDALRCLEQT-GVDGVMIGRGALGNP 220 (231)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhc-CCCEEEEcHHhHhCC
Confidence 346789999999 789999988763 379999999887543
No 98
>PRK04302 triosephosphate isomerase; Provisional
Probab=34.39 E-value=58 Score=27.04 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=28.5
Q ss_pred CceeEEEeCCC-CHHHHHHHHHcCCceeEeeeccccccCC
Q psy15542 89 AELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVTCQ 127 (180)
Q Consensus 89 ~~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt~~ 127 (180)
.+++|++-+|+ +.+.+..+.+.| +|++-|||.++...
T Consensus 172 ~~~pvi~GggI~~~e~~~~~~~~g--adGvlVGsa~l~~~ 209 (223)
T PRK04302 172 PDVKVLCGAGISTGEDVKAALELG--ADGVLLASGVVKAK 209 (223)
T ss_pred CCCEEEEECCCCCHHHHHHHHcCC--CCEEEEehHHhCCc
Confidence 36789999999 666666666544 79999999998643
No 99
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=33.20 E-value=56 Score=26.98 Aligned_cols=32 Identities=9% Similarity=0.231 Sum_probs=21.9
Q ss_pred ceeEEEeCCCC-HHHHHH-HHHcCCceeEeeecccc
Q psy15542 90 ELQIVASNDIN-EETILS-LNEQGHRIDCFGIGTHL 123 (180)
Q Consensus 90 ~vkIv~Sn~Ld-e~~i~~-L~~~g~~id~fGIGT~L 123 (180)
+++|+++||+. .+.+.+ +.+.| +|+.-|||.|
T Consensus 197 ~ipvia~GGi~s~~di~~~l~~~g--adgV~vg~a~ 230 (232)
T TIGR03572 197 SIPVIALGGAGSLDDLVEVALEAG--ASAVAAASLF 230 (232)
T ss_pred CCCEEEECCCCCHHHHHHHHHHcC--CCEEEEehhh
Confidence 46788888877 566666 55543 6777788765
No 100
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=33.04 E-value=53 Score=29.96 Aligned_cols=35 Identities=11% Similarity=0.184 Sum_probs=30.5
Q ss_pred ceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccC
Q psy15542 90 ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 90 ~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
++++++-||+|++.+.++.+.| .++++|+..+..+
T Consensus 294 ~iPv~AiGGI~~~ni~~l~~~G--a~gVAvisaI~~a 328 (347)
T PRK02615 294 PIPWFAIGGIDKSNIPEVLQAG--AKRVAVVRAIMGA 328 (347)
T ss_pred CCCEEEECCCCHHHHHHHHHcC--CcEEEEeHHHhCC
Confidence 4689999999999999999866 6899999999754
No 101
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=32.86 E-value=37 Score=28.89 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=29.7
Q ss_pred ceeEEEeCCCC-HHHHHHHHHcCCceeEeeeccccccC
Q psy15542 90 ELQIVASNDIN-EETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 90 ~vkIv~Sn~Ld-e~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
+++|+++||++ .+.+.++.+.| .|..+|||.+...
T Consensus 243 ~ipiia~GGI~~~~da~~~l~~G--Ad~V~vg~a~~~~ 278 (289)
T cd02810 243 DIPIIGVGGIDSGEDVLEMLMAG--ASAVQVATALMWD 278 (289)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--ccHheEcHHHHhc
Confidence 67899999996 78888888866 7999999998753
No 102
>PRK13685 hypothetical protein; Provisional
Probab=32.50 E-value=62 Score=28.49 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=24.8
Q ss_pred ceeEEEeCCCCH------------HHHHHHHHcCCceeEeeeccc
Q psy15542 90 ELQIVASNDINE------------ETILSLNEQGHRIDCFGIGTH 122 (180)
Q Consensus 90 ~vkIv~Sn~Lde------------~~i~~L~~~g~~id~fGIGT~ 122 (180)
+.-|++|||.|. +.+..+.++|..|..+|+||.
T Consensus 195 ~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 195 ARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTP 239 (326)
T ss_pred CEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCC
Confidence 434999999874 244556678889999999984
No 103
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=32.37 E-value=29 Score=32.85 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=37.6
Q ss_pred CCceeEEEeCCCCHHHHHHHHHcCCceeEeeec------cccccCCCCCcceeEEEEe
Q psy15542 88 FAELQIVASNDINEETILSLNEQGHRIDCFGIG------THLVTCQRQPALGCVYKLV 139 (180)
Q Consensus 88 ~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIG------T~Lvt~~~~p~Lg~VyKLV 139 (180)
++++.|++-|..+.+.++.|.+.|+.+=..|+| |+.++..+.|.+..+++++
T Consensus 264 ~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~ 321 (475)
T TIGR01303 264 DLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECA 321 (475)
T ss_pred CCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHH
Confidence 567889999999999999999988864334444 4444555667777777663
No 104
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=31.90 E-value=37 Score=27.49 Aligned_cols=71 Identities=15% Similarity=0.061 Sum_probs=49.0
Q ss_pred cccHHHHHHHHHHHCCCCeEEeeeec---ccc------ccCCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeecccc
Q psy15542 53 SDGELAALISYAIAFPDGFMALVDTY---DVK------RYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHL 123 (180)
Q Consensus 53 ~~~E~~Af~aya~~fP~~~i~LvDTY---d~~------~Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~L 123 (180)
+.+..++.++=.+.-.+ .|.+.=++ .++ .|...|.+++.+++-+.|-.+.+..|++.|. --.|+-||.+
T Consensus 49 ~~tp~e~v~aA~~~dv~-vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~-~~if~pgt~~ 126 (143)
T COG2185 49 FQTPEEAVRAAVEEDVD-VIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGV-DRIFGPGTPI 126 (143)
T ss_pred cCCHHHHHHHHHhcCCC-EEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCc-ceeeCCCCCH
Confidence 34444555444444333 45554444 222 7888999999779999999999999999774 2389999998
Q ss_pred cc
Q psy15542 124 VT 125 (180)
Q Consensus 124 vt 125 (180)
..
T Consensus 127 ~~ 128 (143)
T COG2185 127 EE 128 (143)
T ss_pred HH
Confidence 63
No 105
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=31.77 E-value=87 Score=25.67 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=23.5
Q ss_pred CceeEEEeCCCC----HHHHHHHHHcCCceeEeeecc
Q psy15542 89 AELQIVASNDIN----EETILSLNEQGHRIDCFGIGT 121 (180)
Q Consensus 89 ~~vkIv~Sn~Ld----e~~i~~L~~~g~~id~fGIGT 121 (180)
.++-|+++||-. .+.+..+++.|..|-++|||.
T Consensus 109 ~kvvillTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~ 145 (224)
T cd01475 109 PRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGR 145 (224)
T ss_pred CeEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCc
Confidence 566689999865 334556667777777888886
No 106
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=31.70 E-value=44 Score=29.82 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=29.5
Q ss_pred CceeEEEeCCC-CHHHHHHHHHcCCceeEeeecccccc
Q psy15542 89 AELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 89 ~~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
.+++|++|||+ +.+.+.+....| .|+.|+|+.+..
T Consensus 253 ~~ipVIasGGI~~~~di~kaLalG--Ad~V~igr~~L~ 288 (333)
T TIGR02151 253 PDAPIIASGGLRTGLDVAKAIALG--ADAVGMARPFLK 288 (333)
T ss_pred CCCeEEEECCCCCHHHHHHHHHhC--CCeehhhHHHHH
Confidence 36889999999 888888888877 799999998763
No 107
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.48 E-value=22 Score=33.63 Aligned_cols=61 Identities=25% Similarity=0.283 Sum_probs=46.9
Q ss_pred CCCceeEEEeCCCCHHHHHHHHHcCCceeEeeecc------ccccCCCCCcceeEEEEeEE---cCccee
Q psy15542 87 WFAELQIVASNDINEETILSLNEQGHRIDCFGIGT------HLVTCQRQPALGCVYKLVEI---NGMPRI 147 (180)
Q Consensus 87 g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT------~Lvt~~~~p~Lg~VyKLVei---~G~P~~ 147 (180)
-++++.|++-|=-+.+..+.|.+.|+..-..|||+ +.+|..+.|-+..|+++.+. .|.|+|
T Consensus 265 ~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~vi 334 (479)
T PRK07807 265 LDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVW 334 (479)
T ss_pred HCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEE
Confidence 35678899999999999999999887655677887 45566677888888888763 244555
No 108
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=31.37 E-value=1.4e+02 Score=21.90 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=24.5
Q ss_pred CCceeEEEeCCCCH----HHHHHHHHcCCceeEeeeccccc
Q psy15542 88 FAELQIVASNDINE----ETILSLNEQGHRIDCFGIGTHLV 124 (180)
Q Consensus 88 ~~~vkIv~Sn~Lde----~~i~~L~~~g~~id~fGIGT~Lv 124 (180)
..+.-|++|||-+. +.+..+.+++..+..+|+|..-.
T Consensus 99 ~~~~iv~iTDG~~~~~~~~~~~~~~~~~i~i~~v~~~~~~~ 139 (172)
T PF13519_consen 99 RRRAIVLITDGEDNSSDIEAAKALKQQGITIYTVGIGSDSD 139 (172)
T ss_dssp EEEEEEEEES-TTHCHHHHHHHHHHCTTEEEEEEEES-TT-
T ss_pred CceEEEEecCCCCCcchhHHHHHHHHcCCeEEEEEECCCcc
Confidence 44555999999865 45666666777788888887654
No 109
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=31.26 E-value=71 Score=24.45 Aligned_cols=37 Identities=11% Similarity=0.270 Sum_probs=24.5
Q ss_pred CCCCceeEEEeCCCCHHH----HHHHHHcCCceeEeeeccc
Q psy15542 86 PWFAELQIVASNDINEET----ILSLNEQGHRIDCFGIGTH 122 (180)
Q Consensus 86 ~g~~~vkIv~Sn~Lde~~----i~~L~~~g~~id~fGIGT~ 122 (180)
.+..++-|++|||-+.+. ...+.+.|..+-++|+|++
T Consensus 101 ~~~~~~iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g~~ 141 (164)
T cd01472 101 EGVPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKNA 141 (164)
T ss_pred CCCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEECCcC
Confidence 345666688898876543 3356666766767777764
No 110
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=31.17 E-value=96 Score=22.07 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=25.0
Q ss_pred CCCceeEEEeCCCCH-------HHHHHHHHcCCceeEeeecc
Q psy15542 87 WFAELQIVASNDINE-------ETILSLNEQGHRIDCFGIGT 121 (180)
Q Consensus 87 g~~~vkIv~Sn~Lde-------~~i~~L~~~g~~id~fGIGT 121 (180)
+..+.-|++||+.+. +.+..+.+.+..+..+|+|+
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~g~ 141 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGIGD 141 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEcCC
Confidence 344544788877764 45666667788899999997
No 111
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=30.90 E-value=53 Score=27.57 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=26.9
Q ss_pred ceeEEEeCCC-CHHHHHHHHHcCCceeEeeeccccc
Q psy15542 90 ELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLV 124 (180)
Q Consensus 90 ~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lv 124 (180)
++++++|||+ +.+.+.+|.+.| +++.=||+.|-
T Consensus 191 ~~~viasGGv~~~~Dl~~l~~~G--~~gvivg~al~ 224 (229)
T PF00977_consen 191 NIPVIASGGVRSLEDLRELKKAG--IDGVIVGSALH 224 (229)
T ss_dssp SSEEEEESS--SHHHHHHHHHTT--ECEEEESHHHH
T ss_pred CCCEEEecCCCCHHHHHHHHHCC--CcEEEEehHhh
Confidence 6789999999 889999999766 58888888773
No 112
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=30.79 E-value=98 Score=24.84 Aligned_cols=40 Identities=10% Similarity=0.233 Sum_probs=26.5
Q ss_pred ccCCCCCCceeEEEeCCCCH------HHHHHHHHc-----CCceeEeeeccc
Q psy15542 82 RYNIPWFAELQIVASNDINE------ETILSLNEQ-----GHRIDCFGIGTH 122 (180)
Q Consensus 82 ~Ld~~g~~~vkIv~Sn~Lde------~~i~~L~~~-----g~~id~fGIGT~ 122 (180)
.|+ ++..+.-|++|||.+. +.+.++.+. +..+..+|+|+.
T Consensus 129 ~l~-~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igiG~~ 179 (206)
T cd01456 129 YVD-PGRVNVVVLITDGEDTCGPDPCEVARELAKRRTPAPPIKVNVIDFGGD 179 (206)
T ss_pred HhC-CCCcceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCCceEEEEEecCc
Confidence 344 4543444999999863 445555543 666889999986
No 113
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=30.11 E-value=76 Score=26.38 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCceeEeeecccccc
Q psy15542 102 ETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 102 ~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
+.+.+|.+++..++..|+|+.-.+
T Consensus 127 ~~~~~lkk~~I~v~vI~~G~~~~~ 150 (187)
T cd01452 127 KLAKRLKKNNVSVDIINFGEIDDN 150 (187)
T ss_pred HHHHHHHHcCCeEEEEEeCCCCCC
Confidence 344777788999999999998543
No 114
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=30.11 E-value=58 Score=27.56 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=28.3
Q ss_pred eeEEEeCCC-CHHHHHHHHHcCCceeEeeecccccc
Q psy15542 91 LQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 91 vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
..|++-+|+ +.+.+..+.+.| .|++-|||.++.
T Consensus 186 ~~i~v~gGI~~~e~i~~~~~~g--aD~vvvGSai~~ 219 (244)
T PRK13125 186 KYLVVGFGLDSPEDARDALSAG--ADGVVVGTAFIE 219 (244)
T ss_pred CCEEEeCCcCCHHHHHHHHHcC--CCEEEECHHHHH
Confidence 358899999 999999998866 689999999974
No 115
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=29.44 E-value=39 Score=31.13 Aligned_cols=87 Identities=21% Similarity=0.202 Sum_probs=58.4
Q ss_pred ccHHHHHHHHHHHCCCCeEEeeeecccc---------ccCCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeec----
Q psy15542 54 DGELAALISYAIAFPDGFMALVDTYDVK---------RYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIG---- 120 (180)
Q Consensus 54 ~~E~~Af~aya~~fP~~~i~LvDTYd~~---------~Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIG---- 120 (180)
+++++-..+-.++.+..=.+.+|+-.-- .+. .-++++.|++-|=-+.+..++|.+.|+.+--.|||
T Consensus 107 ~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik-~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSi 185 (346)
T PRK05096 107 DADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAR-EAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSV 185 (346)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHH-HhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCcc
Confidence 4445555555555443223445664221 222 24677889999999999999999999876667777
Q ss_pred --cccccCCCCCcceeEEEEeEE
Q psy15542 121 --THLVTCQRQPALGCVYKLVEI 141 (180)
Q Consensus 121 --T~Lvt~~~~p~Lg~VyKLVei 141 (180)
|.+++..+.|-|..||+..+.
T Consensus 186 CtTr~vtGvG~PQltAV~~~a~~ 208 (346)
T PRK05096 186 CTTRVKTGVGYPQLSAVIECADA 208 (346)
T ss_pred ccCccccccChhHHHHHHHHHHH
Confidence 677777778888888776543
No 116
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=29.03 E-value=68 Score=23.56 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=24.3
Q ss_pred CCCceeEEEeCCCC------HHHHHHHHHcCCceeEeeecc
Q psy15542 87 WFAELQIVASNDIN------EETILSLNEQGHRIDCFGIGT 121 (180)
Q Consensus 87 g~~~vkIv~Sn~Ld------e~~i~~L~~~g~~id~fGIGT 121 (180)
...++-|++|+|.+ .+.++++.+++.++..+|+|.
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g~ 142 (161)
T cd01450 102 NVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVGP 142 (161)
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEeccc
Confidence 34444477777654 345777777888888999997
No 117
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=28.87 E-value=3.6e+02 Score=24.93 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=29.7
Q ss_pred ccCCCCCC-ceeEEEeCCC-CHHHHHHHHHcCCceeEeeeccccccCCCCCcceeEE
Q psy15542 82 RYNIPWFA-ELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVY 136 (180)
Q Consensus 82 ~Ld~~g~~-~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~Lg~Vy 136 (180)
.|...++. ++++++||+| ++..+.....-|+ |.+++||-..- +|||++
T Consensus 265 ~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGA--D~v~igt~~li-----AlGC~~ 314 (368)
T PF01645_consen 265 ALVKNGLRDRVSLIASGGLRTGDDVAKALALGA--DAVYIGTAALI-----ALGCIQ 314 (368)
T ss_dssp HHHCTT-CCCSEEEEESS--SHHHHHHHHHCT---SEEE-SHHHHH-----HCT--S
T ss_pred HHHHcCCCCceEEEEeCCccCHHHHHHHHhcCC--CeeEecchhhh-----hcchHH
Confidence 55566655 5999999998 4555655555665 99999998763 455554
No 118
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=28.67 E-value=60 Score=29.06 Aligned_cols=37 Identities=14% Similarity=0.250 Sum_probs=31.9
Q ss_pred ceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccCC
Q psy15542 90 ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQ 127 (180)
Q Consensus 90 ~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~~ 127 (180)
+++|+++|+++.+.+.++.+.|. +|..|+|..+...+
T Consensus 285 ~ipvi~~G~i~~~~a~~~l~~g~-~D~V~~gR~~ladP 321 (338)
T cd02933 285 KGPLIAAGGYDAESAEAALADGK-ADLVAFGRPFIANP 321 (338)
T ss_pred CCCEEEECCCCHHHHHHHHHcCC-CCEEEeCHhhhhCc
Confidence 46799999999999999988765 89999999998654
No 119
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=28.44 E-value=56 Score=28.73 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=21.9
Q ss_pred CceeEEEeCCCCHHHHHHHHH---cCCcee-Eeeeccccc
Q psy15542 89 AELQIVASNDINEETILSLNE---QGHRID-CFGIGTHLV 124 (180)
Q Consensus 89 ~~vkIv~Sn~Lde~~i~~L~~---~g~~id-~fGIGT~Lv 124 (180)
..+ |+++|||+.+...++.+ .-.|+. ++|||+.=+
T Consensus 52 D~~-iavtnGi~~~~~~~i~~~i~~~~Pv~vs~~ig~g~t 90 (246)
T PF05165_consen 52 DNM-IAVTNGIDLEDHARIQESIRNRYPVTVSMCIGYGET 90 (246)
T ss_dssp SEE-EEE-TT--HHHHHHHHHHHHHHSSS-EEEEEEEESS
T ss_pred eeE-EEeecCCCHHHHHHHHHHHHhcCCceEEEEEecCCC
Confidence 355 99999999999998875 334555 667776544
No 120
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=28.35 E-value=72 Score=26.07 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=24.2
Q ss_pred ceeEEEeCCCCH------------HHHHHHHHcCCceeEeeecccc
Q psy15542 90 ELQIVASNDINE------------ETILSLNEQGHRIDCFGIGTHL 123 (180)
Q Consensus 90 ~vkIv~Sn~Lde------------~~i~~L~~~g~~id~fGIGT~L 123 (180)
+.-|+++|+-|. ..+..|.+.|..+..||||+.-
T Consensus 129 k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~~ 174 (218)
T cd01458 129 KRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDKGIELELFPLSSPG 174 (218)
T ss_pred cEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCCC
Confidence 333888987764 3455566678888899999864
No 121
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=28.25 E-value=80 Score=23.84 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=20.1
Q ss_pred EEEeCCCC------HHHHHHH----HHcCCceeEeeeccc
Q psy15542 93 IVASNDIN------EETILSL----NEQGHRIDCFGIGTH 122 (180)
Q Consensus 93 Iv~Sn~Ld------e~~i~~L----~~~g~~id~fGIGT~ 122 (180)
|++|||.+ .+.+.++ .+.+..|.++|+|..
T Consensus 101 vl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~~ 140 (170)
T cd01465 101 LLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDN 140 (170)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCCC
Confidence 88888875 3444333 346777889999943
No 122
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=27.62 E-value=60 Score=28.03 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=29.8
Q ss_pred ceeEEEeCCC-CHHHHHHHHHcCCceeEeeecccccc
Q psy15542 90 ELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 90 ~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
++.|+++|++ +.+.+.++.+.| .|...|||-+..
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~aG--Ad~V~igr~ll~ 268 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMAG--ASAVQVGTANFY 268 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCceeEcHHHhc
Confidence 5789999999 899999998877 599999999875
No 123
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=27.43 E-value=1.3e+02 Score=27.25 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=29.2
Q ss_pred ceeEEEeCCCC-HHHHHHHHHcCCceeEeeeccccccCCCCCc
Q psy15542 90 ELQIVASNDIN-EETILSLNEQGHRIDCFGIGTHLVTCQRQPA 131 (180)
Q Consensus 90 ~vkIv~Sn~Ld-e~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~ 131 (180)
++.|+++||+- ...|.+....| .|+.++|+.+..+...|.
T Consensus 201 ~ipVIAdGGI~~~~Di~KaLa~G--A~aV~vG~~~~~~~espg 241 (326)
T PRK05458 201 RKPIIADGGIRTHGDIAKSIRFG--ATMVMIGSLFAGHEESPG 241 (326)
T ss_pred CCCEEEeCCCCCHHHHHHHHHhC--CCEEEechhhcCCccCCC
Confidence 57799999984 44444444445 589999999998777765
No 124
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.20 E-value=54 Score=28.38 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=30.3
Q ss_pred ceeEEEeCCCC-HHHHHHHHHcCCceeEeeeccccccCC
Q psy15542 90 ELQIVASNDIN-EETILSLNEQGHRIDCFGIGTHLVTCQ 127 (180)
Q Consensus 90 ~vkIv~Sn~Ld-e~~i~~L~~~g~~id~fGIGT~Lvt~~ 127 (180)
+++|++++++. .+.+.++.+.+. +|..++|+.+...+
T Consensus 281 ~iPVi~~Ggi~t~~~a~~~l~~g~-aD~V~igR~~ladP 318 (327)
T cd02803 281 KIPVIAVGGIRDPEVAEEILAEGK-ADLVALGRALLADP 318 (327)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCC-CCeeeecHHHHhCc
Confidence 56799999997 888998887643 79999999887644
No 125
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=26.61 E-value=2.9e+02 Score=21.07 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=22.6
Q ss_pred CceeEEEeCCCC------HHHHHH-HHHcCCceeEeeecc
Q psy15542 89 AELQIVASNDIN------EETILS-LNEQGHRIDCFGIGT 121 (180)
Q Consensus 89 ~~vkIv~Sn~Ld------e~~i~~-L~~~g~~id~fGIGT 121 (180)
.++-|++||+.+ ...+.+ +.+.|..|.++|+|+
T Consensus 103 ~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~ 142 (180)
T cd01467 103 ERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGK 142 (180)
T ss_pred CCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecC
Confidence 355599998853 223333 445788899999997
No 126
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=26.45 E-value=2.5e+02 Score=23.33 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=18.6
Q ss_pred eeEEEeCCCCHHHHHHHHHcCCc
Q psy15542 91 LQIVASNDINEETILSLNEQGHR 113 (180)
Q Consensus 91 vkIv~Sn~Lde~~i~~L~~~g~~ 113 (180)
.+++..|||+++-+.++.+.-+|
T Consensus 155 ~p~~LAGGi~peNv~~ai~~~~p 177 (210)
T PRK01222 155 KPWILAGGLNPDNVAEAIRQVRP 177 (210)
T ss_pred CCEEEECCCCHHHHHHHHHhcCC
Confidence 46999999999999998874333
No 127
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=25.61 E-value=91 Score=29.17 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=32.4
Q ss_pred CceeEEEeCCCCHHHHHHHHHcCCc-eeEeeeccccccC
Q psy15542 89 AELQIVASNDINEETILSLNEQGHR-IDCFGIGTHLVTC 126 (180)
Q Consensus 89 ~~vkIv~Sn~Lde~~i~~L~~~g~~-id~fGIGT~Lvt~ 126 (180)
.+++|++-||++.+.+.++.+.|+. .|++++++.+...
T Consensus 443 ~~~Pv~aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~~ 481 (502)
T PLN02898 443 SKLPVVAIGGISASNAASVMESGAPNLKGVAVVSALFDQ 481 (502)
T ss_pred CCCCEEEECCCCHHHHHHHHHcCCCcCceEEEEeHHhcC
Confidence 3678999999999999999998763 6699999999753
No 128
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=25.47 E-value=29 Score=27.02 Aligned_cols=65 Identities=18% Similarity=0.208 Sum_probs=46.2
Q ss_pred cchHHHHHHHHHHhh--cCccccceeeec-ccHHHHHHHHHHHC-CCCeEEeeeecccc-----ccCCCCCCce
Q psy15542 27 DADLLALSISWRNKI--SPILDVLTDEAS-DGELAALISYAIAF-PDGFMALVDTYDVK-----RYNIPWFAEL 91 (180)
Q Consensus 27 ~~d~~~~~~~~~~~~--~~~~~~~~~~~~-~~E~~Af~aya~~f-P~~~i~LvDTYd~~-----~Ld~~g~~~v 91 (180)
+.|..+...+|-+.. ++++|..|..+. .+|++|..+-...| +.-...++|.-..+ +|..+|+.++
T Consensus 45 ~~~~~~~~~~~n~~~~~s~~~GF~fD~s~Vk~Eiaa~~~v~~~Y~~~L~~G~vd~e~~~~~~~~kLk~AGidkV 118 (134)
T PF12010_consen 45 PPDKWEQYEEFNDNAKPSPLLGFTFDPSPVKNEIAACSNVWSEYYPPLETGLVDPEEALPEFNEKLKAAGIDKV 118 (134)
T ss_pred CHHHHHHHHHHHhhCccCcccCeeECCchhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhChHHH
Confidence 468888888887765 446776665554 78999999988777 44467888832222 7888888887
No 129
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=25.37 E-value=2.5e+02 Score=19.94 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHHHCCCCeEEeeeecccc--ccCCCCCCce--------eEEEeCCCCHHHHHH
Q psy15542 54 DGELAALISYAIAFPDGFMALVDTYDVK--RYNIPWFAEL--------QIVASNDINEETILS 106 (180)
Q Consensus 54 ~~E~~Af~aya~~fP~~~i~LvDTYd~~--~Ld~~g~~~v--------kIv~Sn~Lde~~i~~ 106 (180)
++..+.+++|++.++-++..+.|..... .+++.+.+.+ .-..+|-++++.|.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 58 SGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred CCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 3347788889988876676676754333 4555444433 334566666666644
No 130
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=25.31 E-value=1.4e+02 Score=26.07 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=25.5
Q ss_pred eeEEEeCCC-CHHHHHHHHHcCCceeEeeeccccccCCC
Q psy15542 91 LQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVTCQR 128 (180)
Q Consensus 91 vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt~~~ 128 (180)
+.+|+.+|+ +.+.+..+.+.| +|+|=|||.|+.+.+
T Consensus 210 ~~~iseSGI~~~~d~~~l~~~G--~davLVGe~lm~~~d 246 (254)
T PF00218_consen 210 VIVISESGIKTPEDARRLARAG--ADAVLVGEALMRSPD 246 (254)
T ss_dssp SEEEEESS-SSHHHHHHHCTTT---SEEEESHHHHTSSS
T ss_pred eeEEeecCCCCHHHHHHHHHCC--CCEEEECHHHhCCCC
Confidence 334555555 589999999765 799999999987653
No 131
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=25.18 E-value=60 Score=29.00 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=31.5
Q ss_pred ceeEEEeCCC-CHHHHHHHHHcCCceeEeeeccccccCCC
Q psy15542 90 ELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVTCQR 128 (180)
Q Consensus 90 ~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt~~~ 128 (180)
+++|+++|++ +.+.+.++.+.+. +|..++|.-+...+.
T Consensus 285 ~ipvi~~G~i~~~~~~~~~l~~~~-~D~V~~gR~~ladP~ 323 (343)
T cd04734 285 DLPVFHAGRIRDPAEAEQALAAGH-ADMVGMTRAHIADPH 323 (343)
T ss_pred CCCEEeeCCCCCHHHHHHHHHcCC-CCeeeecHHhHhCcc
Confidence 4679999998 7888999987664 899999999986553
No 132
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=25.02 E-value=1e+02 Score=26.48 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=30.5
Q ss_pred CCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeecccccc
Q psy15542 85 IPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 85 ~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
..++ ++.|-+-||+|++++..+.+.| +|.|=+|+.+..
T Consensus 175 ~~~~-~~~IeVDGGI~~~ti~~l~~aG--aD~~V~GSalF~ 212 (228)
T PRK08091 175 NRRV-EKLISIDGSMTLELASYLKQHQ--IDWVVSGSALFS 212 (228)
T ss_pred hcCC-CceEEEECCCCHHHHHHHHHCC--CCEEEEChhhhC
Confidence 3454 4569999999999999999977 477888888864
No 133
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=24.79 E-value=1.6e+02 Score=22.31 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=21.1
Q ss_pred CCCceeEEEeCCCCH----HHHHHHHH-cCCceeEeeeccc
Q psy15542 87 WFAELQIVASNDINE----ETILSLNE-QGHRIDCFGIGTH 122 (180)
Q Consensus 87 g~~~vkIv~Sn~Lde----~~i~~L~~-~g~~id~fGIGT~ 122 (180)
+..++-|++|||-+. ...+.|.+ .+..+-++|+|..
T Consensus 102 ~~~~~villTDG~~~~~~~~~~~~l~~~~~v~v~~vg~g~~ 142 (163)
T cd01476 102 GIPKVVVVLTDGRSHDDPEKQARILRAVPNIETFAVGTGDP 142 (163)
T ss_pred CCCeEEEEECCCCCCCchHHHHHHHhhcCCCEEEEEECCCc
Confidence 444666888887552 23455555 4544556666654
No 134
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.57 E-value=1.7e+02 Score=27.39 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=30.3
Q ss_pred ceeEEEeCCC-CHHHHHHHHHcCCceeEeeeccccccCCCCCc
Q psy15542 90 ELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVTCQRQPA 131 (180)
Q Consensus 90 ~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt~~~~p~ 131 (180)
++.||+.|++ +...|..-...| .++..||+.|+.+...|.
T Consensus 256 ~vpVIAdGGI~~~~Di~KALalG--A~aVmvGs~~agt~Espg 296 (404)
T PRK06843 256 NICIIADGGIRFSGDVVKAIAAG--ADSVMIGNLFAGTKESPS 296 (404)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC--CCEEEEcceeeeeecCCC
Confidence 4789999998 556666555555 578899999998776665
No 135
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.55 E-value=36 Score=30.44 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=31.3
Q ss_pred ceeEEEeCCC-CHHHHHHHHHcCCceeEeeeccccccCCC
Q psy15542 90 ELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVTCQR 128 (180)
Q Consensus 90 ~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt~~~ 128 (180)
+++++++|++ +.+.+.++.+.| +|..++|..+...++
T Consensus 284 ~iPVi~~Ggi~t~e~ae~~l~~g--aD~V~~gR~liadPd 321 (353)
T cd04735 284 RLPLIAVGSINTPDDALEALETG--ADLVAIGRGLLVDPD 321 (353)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CChHHHhHHHHhCcc
Confidence 5679999999 799999998875 899999999986543
No 136
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=24.32 E-value=86 Score=27.01 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=28.9
Q ss_pred ceeEEEeCCCC-HHHHHHHHHcCCceeEeeecccccc
Q psy15542 90 ELQIVASNDIN-EETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 90 ~vkIv~Sn~Ld-e~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
+.+|++-+|++ .+.+..+.+.| .|++-|||.++.
T Consensus 198 ~~pi~vgfGI~~~e~~~~~~~~G--ADgvVvGSaiv~ 232 (256)
T TIGR00262 198 AKPVLVGFGISKPEQVKQAIDAG--ADGVIVGSAIVK 232 (256)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcC--CCEEEECHHHHH
Confidence 45799999997 99999999866 488999999974
No 137
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=24.02 E-value=2.5e+02 Score=25.25 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHhhcCccccceeeec---ccHHHHHHHHHHHCCCCeEEeeeecccc----------ccCCC--CCCceeE
Q psy15542 29 DLLALSISWRNKISPILDVLTDEAS---DGELAALISYAIAFPDGFMALVDTYDVK----------RYNIP--WFAELQI 93 (180)
Q Consensus 29 d~~~~~~~~~~~~~~~~~~~~~~~~---~~E~~Af~aya~~fP~~~i~LvDTYd~~----------~Ld~~--g~~~vkI 93 (180)
|......+|.++..-...+...+++ +.++..+......++-..+.++||++.. .+... +-..+-+
T Consensus 114 d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~ 193 (333)
T TIGR03217 114 DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGF 193 (333)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEE
Confidence 3444444555554322222233444 3345555555566766789999999888 22211 1122334
Q ss_pred EEeCCCCHHHHHHHH--HcCCc-ee--Eeeeccc
Q psy15542 94 VASNDINEETILSLN--EQGHR-ID--CFGIGTH 122 (180)
Q Consensus 94 v~Sn~Lde~~i~~L~--~~g~~-id--~fGIGT~ 122 (180)
=+-|++-.-....+. +.|+. || ..|+|-.
T Consensus 194 H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~ 227 (333)
T TIGR03217 194 HAHHNLSLAVANSIAAIEAGATRIDASLRGLGAG 227 (333)
T ss_pred EeCCCCchHHHHHHHHHHhCCCEEEeeccccccc
Confidence 456777776666664 46665 66 6888874
No 138
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.89 E-value=98 Score=25.55 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=28.2
Q ss_pred ceeEEEeCCCC-HHHHHHHHHcCCceeEeeeccccccCC
Q psy15542 90 ELQIVASNDIN-EETILSLNEQGHRIDCFGIGTHLVTCQ 127 (180)
Q Consensus 90 ~vkIv~Sn~Ld-e~~i~~L~~~g~~id~fGIGT~Lvt~~ 127 (180)
+++|+++||+. .+.+..+.+.| ++++-|||.+....
T Consensus 193 ~iPvia~GGI~~~~di~~~~~~G--a~gv~vgsa~~~~~ 229 (241)
T PRK13585 193 DIPVIASGGVTTLDDLRALKEAG--AAGVVVGSALYKGK 229 (241)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcC--CCEEEEEHHHhcCC
Confidence 56799999998 88888887654 67888899887543
No 139
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=23.83 E-value=1.8e+02 Score=22.27 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=31.6
Q ss_pred HHHHHHHHHHCCCC-eEEeeeecccc----ccCCCCCCceeEEEeCC
Q psy15542 57 LAALISYAIAFPDG-FMALVDTYDVK----RYNIPWFAELQIVASND 98 (180)
Q Consensus 57 ~~Af~aya~~fP~~-~i~LvDTYd~~----~Ld~~g~~~vkIv~Sn~ 98 (180)
.-.|...++.|++. .++.+|+-+-. ++++.+.+.+ |++.||
T Consensus 48 ~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTl-i~fkdG 93 (111)
T cd02965 48 AVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPAL-LFFRDG 93 (111)
T ss_pred HhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEE-EEEECC
Confidence 45888999999986 36677776443 8999999988 888765
No 140
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=23.76 E-value=1.1e+02 Score=26.05 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=27.7
Q ss_pred ceeEEEeCCCC-------HHHHHHHHHcCCceeEeeeccccccCC
Q psy15542 90 ELQIVASNDIN-------EETILSLNEQGHRIDCFGIGTHLVTCQ 127 (180)
Q Consensus 90 ~vkIv~Sn~Ld-------e~~i~~L~~~g~~id~fGIGT~Lvt~~ 127 (180)
.++|+++||++ .+.+.++.+.|+ +++-+|..+....
T Consensus 192 ~iPVva~GGi~~~~~~~~~~~i~~~~~aGa--~Gia~g~~i~~~~ 234 (258)
T TIGR01949 192 PAPVVVAGGPKTNSDREFLQMIKDAMEAGA--AGVAVGRNIFQHD 234 (258)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHcCC--cEEehhhHhhcCC
Confidence 47799999998 677777778775 4788888887543
No 141
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=23.72 E-value=76 Score=27.98 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=31.2
Q ss_pred ceeEEEeCCC-CHHHHHHHHHcCCceeEeeeccccccCC
Q psy15542 90 ELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVTCQ 127 (180)
Q Consensus 90 ~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt~~ 127 (180)
+++|++.+++ +.+.+.++.++|. +|..++|+.+..++
T Consensus 290 ~iPVi~~G~i~t~~~a~~~l~~g~-aD~V~~gR~~i~dP 327 (336)
T cd02932 290 GIPVIAVGLITDPEQAEAILESGR-ADLVALGRELLRNP 327 (336)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCC-CCeehhhHHHHhCc
Confidence 5679999998 7888999988775 89999999988654
No 142
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=23.61 E-value=1.5e+02 Score=25.03 Aligned_cols=68 Identities=15% Similarity=0.076 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCCeEEeeeecccc---------ccCCCCCCceeEEEeCCCC-HHHHHHHHHcCCceeEeeeccccccC
Q psy15542 57 LAALISYAIAFPDGFMALVDTYDVK---------RYNIPWFAELQIVASNDIN-EETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 57 ~~Af~aya~~fP~~~i~LvDTYd~~---------~Ld~~g~~~vkIv~Sn~Ld-e~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
.+..+.|. .++-..+.++|+.... --.+.-..+++|.++||+. .+.+.++...| ++..-|||.+...
T Consensus 33 ~~~a~~~~-~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~G--a~~vivgt~~~~~ 109 (254)
T TIGR00735 33 VELAQRYD-EEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAG--ADKVSINTAAVKN 109 (254)
T ss_pred HHHHHHHH-HcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC--CCEEEEChhHhhC
Confidence 33444443 3555577888887442 0011112346799999997 89999998865 6778999998764
Q ss_pred C
Q psy15542 127 Q 127 (180)
Q Consensus 127 ~ 127 (180)
.
T Consensus 110 p 110 (254)
T TIGR00735 110 P 110 (254)
T ss_pred h
Confidence 3
No 143
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=23.61 E-value=1.8e+02 Score=21.86 Aligned_cols=34 Identities=12% Similarity=0.317 Sum_probs=22.0
Q ss_pred CceeEEEeCCCCH---HHH---HHHHH-cCCceeEeeeccc
Q psy15542 89 AELQIVASNDINE---ETI---LSLNE-QGHRIDCFGIGTH 122 (180)
Q Consensus 89 ~~vkIv~Sn~Lde---~~i---~~L~~-~g~~id~fGIGT~ 122 (180)
..+-|++||+++. +.+ ..+.+ .+..+-.+|||.+
T Consensus 95 ~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~ 135 (152)
T cd01462 95 KADIVLITDGYEGGVSDELLREVELKRSRVARFVALALGDH 135 (152)
T ss_pred CceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecCC
Confidence 3445999999742 233 33443 4577889999984
No 144
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=22.94 E-value=1.1e+02 Score=25.85 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=20.0
Q ss_pred HHHHHHHHHcCCceeEeeecccccc
Q psy15542 101 EETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 101 e~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
.+-++.|.++|.+||++|+=.|+..
T Consensus 139 ~~~v~~l~~~g~~iDgiGlQ~H~~~ 163 (254)
T smart00633 139 YELVKKLKAKGVPIDGIGLQSHLSL 163 (254)
T ss_pred HHHHHHHHHCCCccceeeeeeeecC
Confidence 4566788889999999999777753
No 145
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=22.78 E-value=1.1e+02 Score=26.35 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=31.0
Q ss_pred CCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccc
Q psy15542 88 FAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLV 124 (180)
Q Consensus 88 ~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lv 124 (180)
..+++|+.=|+.+.+-+.+|.+++ .+|++.||..-.
T Consensus 197 ~~~~~IlYGGSV~~~N~~~l~~~~-~vDG~LVG~Asl 232 (242)
T cd00311 197 AEKVRILYGGSVNPENAAELLAQP-DIDGVLVGGASL 232 (242)
T ss_pred cCceeEEECCCCCHHHHHHHhcCC-CCCEEEeehHhh
Confidence 357899999999999999999876 399999997643
No 146
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=21.98 E-value=1.2e+02 Score=24.37 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=21.4
Q ss_pred ceeEEEeCCCCH------HHHHHHHHcCCceeEeeeccc
Q psy15542 90 ELQIVASNDINE------ETILSLNEQGHRIDCFGIGTH 122 (180)
Q Consensus 90 ~vkIv~Sn~Lde------~~i~~L~~~g~~id~fGIGT~ 122 (180)
++-|+.|++-|. +.++.+.+++..|...|+|+.
T Consensus 109 ~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~ 147 (183)
T cd01453 109 EVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE 147 (183)
T ss_pred EEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH
Confidence 453555543322 345566778888999999975
No 147
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=21.94 E-value=1.3e+02 Score=26.69 Aligned_cols=38 Identities=13% Similarity=0.311 Sum_probs=29.1
Q ss_pred ceeEEEeCCCC-HHHHHHHHHcCCceeEeeeccccccCCCC
Q psy15542 90 ELQIVASNDIN-EETILSLNEQGHRIDCFGIGTHLVTCQRQ 129 (180)
Q Consensus 90 ~vkIv~Sn~Ld-e~~i~~L~~~g~~id~fGIGT~Lvt~~~~ 129 (180)
+++|+++||+. .+.+.+....| .|+.-+||.+..+...
T Consensus 161 ~iPviaaGGI~~~~~~~~al~~G--A~gV~iGt~f~~t~Es 199 (307)
T TIGR03151 161 SIPVIAAGGIADGRGMAAAFALG--AEAVQMGTRFLCAKEC 199 (307)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCEeecchHHhccccc
Confidence 47899999996 44477776666 5899999999876543
No 148
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=21.72 E-value=91 Score=26.84 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=28.4
Q ss_pred ceeEEEeCCC-CHHHHHHHHHcCCceeEeeecccccc
Q psy15542 90 ELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 90 ~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
++.|+++||+ +.+.+.++.+.| .|+..||+.+..
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~G--Ad~V~igr~~l~ 268 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMAG--ASAVQVGTAVYY 268 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCceeecHHHhc
Confidence 4679999999 788888888766 789999998874
No 149
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=21.66 E-value=1e+02 Score=26.99 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=30.5
Q ss_pred ceeEEEeCCCCHHHHHHHHHcCCceeEeeeccccccC
Q psy15542 90 ELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTC 126 (180)
Q Consensus 90 ~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt~ 126 (180)
.++|.+.||+..+.++++.+.| ++..+|||.+++.
T Consensus 76 ~~~v~vGGGIr~e~v~~~l~aG--a~rVvIGS~av~~ 110 (253)
T TIGR02129 76 PGGLQVGGGINDTNAQEWLDEG--ASHVIVTSWLFTK 110 (253)
T ss_pred CCCEEEeCCcCHHHHHHHHHcC--CCEEEECcHHHhC
Confidence 4679999999999999999966 5889999998865
No 150
>PRK00148 Maf-like protein; Reviewed
Probab=21.37 E-value=3.8e+02 Score=22.26 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=24.8
Q ss_pred CCceeEEEeCCCCHHHHHHHHHcCCcee---Eeeecc
Q psy15542 88 FAELQIVASNDINEETILSLNEQGHRID---CFGIGT 121 (180)
Q Consensus 88 ~~~vkIv~Sn~Lde~~i~~L~~~g~~id---~fGIGT 121 (180)
...+++-| ..|+++.|..+.+.+.+.| +|||-.
T Consensus 119 ~~~T~V~F-~~l~~~~I~~Yl~~~e~~dkAGay~Iqg 154 (194)
T PRK00148 119 YERTEVHF-AELSDEEIEAYVATGEPLDCAGAFTLQG 154 (194)
T ss_pred EEEEEEEE-CCCCHHHHHHHHhhCCccceeeEEEecc
Confidence 45566666 5799999999999888765 676643
No 151
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=21.30 E-value=93 Score=28.29 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=31.7
Q ss_pred ceeEEEeCCC-CHHHHHHHHHcCCceeEeeeccccccCCC
Q psy15542 90 ELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLVTCQR 128 (180)
Q Consensus 90 ~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt~~~ 128 (180)
+++++++|++ +.+.+.+..+.|. .|..|+|..+...++
T Consensus 305 ~~pvi~~G~i~~~~~~~~~l~~g~-~D~V~~gR~~ladP~ 343 (382)
T cd02931 305 DVPVIMAGRMEDPELASEAINEGI-ADMISLGRPLLADPD 343 (382)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCC-CCeeeechHhHhCcc
Confidence 4679999999 7888888888765 899999999986554
No 152
>KOG1509|consensus
Probab=21.08 E-value=1.1e+02 Score=26.39 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=30.1
Q ss_pred CCCCceeEEEeCCCCHHHHHHHHHcCCce---eEeeecccc
Q psy15542 86 PWFAELQIVASNDINEETILSLNEQGHRI---DCFGIGTHL 123 (180)
Q Consensus 86 ~g~~~vkIv~Sn~Lde~~i~~L~~~g~~i---d~fGIGT~L 123 (180)
.+..++++.|. +|-++.|.++.+.|.+- -+|||+...
T Consensus 137 ~~~d~t~VyF~-eIpee~ie~yV~sG~~lkkAGgy~Iq~~g 176 (209)
T KOG1509|consen 137 EFYDETKVYFG-EIPEEVIEEYVDSGEPLKKAGGYGIQGLG 176 (209)
T ss_pred cceeeeEEEec-cCCHHHHHHHHHcCCchhhccceeccccc
Confidence 46677877777 99999999999998874 489998743
No 153
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=21.05 E-value=4.6e+02 Score=21.34 Aligned_cols=80 Identities=18% Similarity=0.083 Sum_probs=48.5
Q ss_pred HHHHhhcCccccceeeecccHHHHHHHHHHHCCCCeEEeeeecccc-------ccCCCCCCceeEEEeCCCCHHHHHHHH
Q psy15542 36 SWRNKISPILDVLTDEASDGELAALISYAIAFPDGFMALVDTYDVK-------RYNIPWFAELQIVASNDINEETILSLN 108 (180)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~E~~Af~aya~~fP~~~i~LvDTYd~~-------~Ld~~g~~~vkIv~Sn~Lde~~i~~L~ 108 (180)
.+++++.+ +|+.-+...+ +.+++...+.+|+ .-+-+|+.--. .|...|+. +|++|-.|+.+.|.+|.
T Consensus 6 ~~l~~l~~-~g~dgi~v~~--~g~~~~~k~~~~~-~~i~~~~~~nv~N~~s~~~~~~~G~~--~i~ls~EL~~~ei~~i~ 79 (233)
T PF01136_consen 6 KYLDKLKE-LGVDGILVSN--PGLLELLKELGPD-LKIIADYSLNVFNSESARFLKELGAS--RITLSPELSLEEIKEIA 79 (233)
T ss_pred HHHHHHHh-CCCCEEEEcC--HHHHHHHHHhCCC-CcEEEecCccCCCHHHHHHHHHcCCC--EEEECccCCHHHHHHHH
Confidence 34444422 3554444443 6677777777886 33445665222 33344554 48999999999999999
Q ss_pred HcC--CceeEeeecc
Q psy15542 109 EQG--HRIDCFGIGT 121 (180)
Q Consensus 109 ~~g--~~id~fGIGT 121 (180)
+.. .++..+.-|-
T Consensus 80 ~~~~~~~~Ev~v~G~ 94 (233)
T PF01136_consen 80 ENSPGVPLEVIVHGN 94 (233)
T ss_pred HhCCCCeEEEEEeCC
Confidence 853 4555555554
No 154
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=20.86 E-value=1.3e+02 Score=27.11 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=30.2
Q ss_pred ceeEE--EeCCC-CHHHHHHHHHcCCceeEeeeccccccCC
Q psy15542 90 ELQIV--ASNDI-NEETILSLNEQGHRIDCFGIGTHLVTCQ 127 (180)
Q Consensus 90 ~vkIv--~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lvt~~ 127 (180)
+++|+ +.||+ +++.+..+.+.| +|++-||+.++.+.
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~G--AdgVaVGSAI~~a~ 232 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLG--ADGVFVGSGIFKSE 232 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcC--CCEEEEcHHhhcCC
Confidence 35676 99999 999999999865 68999999998644
No 155
>PRK00865 glutamate racemase; Provisional
Probab=20.70 E-value=2.4e+02 Score=24.05 Aligned_cols=60 Identities=22% Similarity=0.177 Sum_probs=42.7
Q ss_pred HHHHHHHHHHCCC-CeEEeeeecccc------------------ccCCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEe
Q psy15542 57 LAALISYAIAFPD-GFMALVDTYDVK------------------RYNIPWFAELQIVASNDINEETILSLNEQGHRIDCF 117 (180)
Q Consensus 57 ~~Af~aya~~fP~-~~i~LvDTYd~~------------------~Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~f 117 (180)
+..++.-.+.+|+ +++++.|+-..= .|...|..-+ ++++|......+.+|++.- .+..+
T Consensus 18 Ltvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~i-VIaCNTa~~~~l~~lr~~~-~iPvi 95 (261)
T PRK00865 18 LTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVKML-VIACNTASAVALPDLRERY-DIPVV 95 (261)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-EEeCchHHHHHHHHHHHhC-CCCEE
Confidence 7888889999996 699999985433 4555676555 9999988766666666542 34455
Q ss_pred e
Q psy15542 118 G 118 (180)
Q Consensus 118 G 118 (180)
|
T Consensus 96 g 96 (261)
T PRK00865 96 G 96 (261)
T ss_pred e
Confidence 5
No 156
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=20.57 E-value=72 Score=28.23 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=28.3
Q ss_pred ceeEEEeCCC-CHHHHHHHHHcCCceeEeeeccccc
Q psy15542 90 ELQIVASNDI-NEETILSLNEQGHRIDCFGIGTHLV 124 (180)
Q Consensus 90 ~vkIv~Sn~L-de~~i~~L~~~g~~id~fGIGT~Lv 124 (180)
+++|+++||+ +.+.+.++...| .|...|||.+.
T Consensus 280 ~ipIi~~GGI~t~~da~e~l~aG--Ad~V~vg~~~~ 313 (327)
T cd04738 280 KIPIIGVGGISSGEDAYEKIRAG--ASLVQLYTGLV 313 (327)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC--CCHHhccHHHH
Confidence 5789999999 888899988865 68899999875
No 157
>PRK14057 epimerase; Provisional
Probab=20.25 E-value=1.4e+02 Score=26.22 Aligned_cols=40 Identities=23% Similarity=0.178 Sum_probs=31.5
Q ss_pred cCCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeecccccc
Q psy15542 83 YNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVT 125 (180)
Q Consensus 83 Ld~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~Lvt 125 (180)
++..++ ++.|-+-||+|++++..+.+.|+ |.|=.|+.+..
T Consensus 187 ~~~~~~-~~~IeVDGGI~~~ti~~l~~aGa--d~~V~GSalF~ 226 (254)
T PRK14057 187 LGDKRE-GKIIVIDGSLTQDQLPSLIAQGI--DRVVSGSALFR 226 (254)
T ss_pred HHhcCC-CceEEEECCCCHHHHHHHHHCCC--CEEEEChHhhC
Confidence 344455 46699999999999999999774 67778888864
No 158
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=20.18 E-value=1.5e+02 Score=25.44 Aligned_cols=38 Identities=32% Similarity=0.354 Sum_probs=29.9
Q ss_pred CCCCCCceeEEEeCCCCHHHHHHHHHcCCceeEeeeccc-cc
Q psy15542 84 NIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTH-LV 124 (180)
Q Consensus 84 d~~g~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIGT~-Lv 124 (180)
+..++ ++.|-+-||+|++++..+.+.| +|.|=+||+ +.
T Consensus 164 ~~~~~-~~~IeVDGGI~~~~i~~~~~aG--ad~~V~Gss~iF 202 (229)
T PRK09722 164 ERNGL-EYLIEVDGSCNQKTYEKLMEAG--ADVFIVGTSGLF 202 (229)
T ss_pred HhcCC-CeEEEEECCCCHHHHHHHHHcC--CCEEEEChHHHc
Confidence 34444 4669999999999999999977 577888865 65
No 159
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=20.13 E-value=42 Score=31.19 Aligned_cols=51 Identities=29% Similarity=0.446 Sum_probs=33.1
Q ss_pred CCceeEEEeCCCCHHHHHHHHHcCCceeEeeec------cccccCCCCCcceeEEEE
Q psy15542 88 FAELQIVASNDINEETILSLNEQGHRIDCFGIG------THLVTCQRQPALGCVYKL 138 (180)
Q Consensus 88 ~~~vkIv~Sn~Lde~~i~~L~~~g~~id~fGIG------T~Lvt~~~~p~Lg~VyKL 138 (180)
++++.|++-|-++.+.++.+.+.|+..=..|+| |..++..+.|.+..++++
T Consensus 263 ~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~ 319 (450)
T TIGR01302 263 YPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDV 319 (450)
T ss_pred CCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHH
Confidence 457889999999999999999987642222443 333333445555554444
No 160
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=20.03 E-value=1.6e+02 Score=25.12 Aligned_cols=32 Identities=28% Similarity=0.565 Sum_probs=22.1
Q ss_pred EEEeCCCCH--HHHHHHHHcCCceeEeeeccccc
Q psy15542 93 IVASNDINE--ETILSLNEQGHRIDCFGIGTHLV 124 (180)
Q Consensus 93 Iv~Sn~Lde--~~i~~L~~~g~~id~fGIGT~Lv 124 (180)
.|.|++.|- |.=.-|.++|-.+.+||-|++.-
T Consensus 6 vVCasN~NRSMEAH~~L~~~G~~V~SfGTGs~Vk 39 (195)
T PF04722_consen 6 VVCASNQNRSMEAHNVLKKAGFNVRSFGTGSHVK 39 (195)
T ss_dssp EEESSSSSHHHHHHHHHHHTT-EEEEEE-SSSEE
T ss_pred EEccCCCCcCHHHHHHHHHCCCceEeecCCCccc
Confidence 566666763 44455677898999999999985
Done!