RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15542
(180 letters)
>gnl|CDD|178473 PLN02885, PLN02885, nicotinate phosphoribosyltransferase.
Length = 545
Score = 191 bits (487), Expect = 1e-58
Identities = 78/179 (43%), Positives = 96/179 (53%), Gaps = 49/179 (27%)
Query: 29 DLLALSISWRNKISPILDVLTD--EASDGELAALISYAIAFPDGFMALVDTYDV------ 80
D ++L W +K+ + E + ELAA SYA+AFP+ F+ALVDTYDV
Sbjct: 238 DFVSLVQEWLSKLQESSSLRGVFSETNQSELAAFTSYALAFPNSFLALVDTYDVMKSGIP 297
Query: 81 -----------------------------------------KRYNIPWFAELQIVASNDI 99
+ +P F ++ I ASNDI
Sbjct: 298 NFCAVALALNDLGYKAVGIRLDSGDLAYLSLEARKFFRTIEEELGVPGFGKMSITASNDI 357
Query: 100 NEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLVEINGMPRIKLSQDVGKVAV 158
NEET+ +LN+QGH ID FGIGTHLVTC QPALGCVYKLVEING PRIKLS+DV KV +
Sbjct: 358 NEETLDALNKQGHEIDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLSEDVEKVTI 416
Score = 45.4 bits (108), Expect = 4e-06
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 155 KVAVSDHLYSFIHELWLQNAPIEELS 180
KV+VS LY FIH LWL AP+ EL
Sbjct: 520 KVSVSAKLYDFIHFLWLNEAPVGELQ 545
>gnl|CDD|238804 cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase
(NAPRTase), subgroup A. Nicotinate
phosphoribosyltransferase catalyses the formation of
NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
(PRPP) and nicotinic acid, this is the first, and also
rate limiting, reaction in the NAD salvage synthesis.
This salvage pathway serves to recycle NAD degradation
products. This subgroup is present in bacteria and
eukaryota (except funghi).
Length = 327
Score = 121 bits (306), Expect = 7e-34
Identities = 52/129 (40%), Positives = 63/129 (48%), Gaps = 40/129 (31%)
Query: 51 EASDGELAALISYAIAFPDGFMALVDTYDVKRYNIPWFAEL------------------- 91
+A D ELAA ++A A+PD F LVDTYD R +P +
Sbjct: 199 QAFDDELAAFRAFAEAYPDNFTLLVDTYDTLRSGLPNAIAVAKELGALGYRLVGVRIDSG 258
Query: 92 ---------------------QIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQP 130
+IVASND++E TI +LN QG ID FG+GT LVT Q QP
Sbjct: 259 DLAYLSKEARKMLDEAGLTKVKIVASNDLDEYTIAALNAQGAPIDAFGVGTRLVTSQSQP 318
Query: 131 ALGCVYKLV 139
ALG VYKLV
Sbjct: 319 ALGGVYKLV 327
>gnl|CDD|233446 TIGR01513, NAPRTase_put, putative nicotinate
phosphoribosyltransferase. A deep split separates two
related families of proteins, one of which includes
experimentally characterized examples of nicotinate
phosphoribosyltransferase, an the first enzyme of NAD
salvage biosynthesis. This model represents the other
family. Members have a different (longer) spacing of
several key motifs and have an additional C-terminal
domain of up to 100 residues. One argument suggesting
that this family represents the same enzyme is that no
species has a member of both families. Another is that
the gene encoding this protein is located near other NAD
salvage biosynthesis genes in Nostoc and in at least
four different Gram-positive bacteria. NAD and NADP are
ubiquitous in life. Most members of this family are
Gram-positive bacteria. An additional set of mutually
closely related archaeal sequences score between the
trusted and noise cutoffs [Biosynthesis of cofactors,
prosthetic groups, and carriers, Pyridine nucleotides].
Length = 443
Score = 114 bits (288), Expect = 1e-30
Identities = 48/142 (33%), Positives = 64/142 (45%), Gaps = 39/142 (27%)
Query: 54 DGELAALISYAIAFPDGFMALVDTYDVKRYNIPWFAEL---------------------- 91
D ELAA +YA +P + LVDTYD R +P +
Sbjct: 202 DNELAAFRAYAKLYPKATVLLVDTYDTLRSGLPNAIAVAKELGEQGKVVGVRIDSGDLLY 261
Query: 92 -----------------QIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGC 134
+IV SND++E +I +L +G ID +G+GT LVT PALG
Sbjct: 262 LSKQARKQLDAAGLTQVKIVVSNDLDENSIAALKAEGAPIDVYGVGTSLVTASDAPALGG 321
Query: 135 VYKLVEINGMPRIKLSQDVGKV 156
VYKLV G P +KLS++ K
Sbjct: 322 VYKLVAYEGRPVMKLSENPEKS 343
>gnl|CDD|236426 PRK09243, PRK09243, nicotinate phosphoribosyltransferase;
Validated.
Length = 464
Score = 107 bits (271), Expect = 7e-28
Identities = 56/149 (37%), Positives = 69/149 (46%), Gaps = 43/149 (28%)
Query: 51 EASDGELAALISYAIAFPDGFMALVDTYDVKRYNIP------------------------ 86
+A D E A +YA +PD + LVDTYD + +P
Sbjct: 208 QAFDDEYEAFRAYAETYPDNTVLLVDTYDTLKSGVPNAIKVAKELGDGIELGGVRIDSGD 267
Query: 87 ---------------WFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPA 131
F + +IVASND++E TI SL QG ID FG+GT LVT PA
Sbjct: 268 LAYLSKKVRKMLDEAGFTDTKIVASNDLDEYTIASLKLQGAPIDGFGVGTKLVTGSDAPA 327
Query: 132 LGCVYKLVEING----MPRIKLSQDVGKV 156
LG VYKLV I G +P+IKLS KV
Sbjct: 328 LGGVYKLVAIEGEGGMIPKIKLSNSPEKV 356
>gnl|CDD|237112 PRK12484, PRK12484, nicotinate phosphoribosyltransferase;
Provisional.
Length = 443
Score = 79.0 bits (195), Expect = 1e-17
Identities = 42/144 (29%), Positives = 54/144 (37%), Gaps = 40/144 (27%)
Query: 51 EASDGELAALISYAIAFPDGFMALVDTYDV------------------------------ 80
EA E+AA ++A +PD LVDTYD
Sbjct: 202 EAFPDEVAAFRAFARLYPDATTLLVDTYDTLRGVRNAIEVAKELGNRFDPRGVRLDSGDL 261
Query: 81 --------KRYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPAL 132
+ +++IVAS ++E I +L G ID FG+GT L P L
Sbjct: 262 AELSKATRAILDAAGLEQVKIVASGGLDEYRIAALLAAGAPIDGFGVGTRLGVAADAPVL 321
Query: 133 GCVYKLVEINGMPRIKLSQDVGKV 156
YKLV G KLS GKV
Sbjct: 322 DSAYKLVAYEGRGVTKLSS--GKV 343
>gnl|CDD|224405 COG1488, PncB, Nicotinic acid phosphoribosyltransferase [Coenzyme
metabolism].
Length = 405
Score = 74.6 bits (184), Expect = 4e-16
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 39/148 (26%)
Query: 52 ASDGELAALISYAIAFPDGFMALVDTYDV------------------------------- 80
E+AA ++A +P + + T
Sbjct: 216 LFGDEVAAFRAWAETYPGDKLLIALTDTYLDDAFLNAIKVAKALGDKRLDGVRLDSGDPR 275
Query: 81 -------KRYNIPWFAELQIVAS-NDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPAL 132
+ + ++I+ S ++E+ I L G R D FG+GT+L T + +P L
Sbjct: 276 ELSEKVRAHLDKLGYDPVKIIVSDGLLDEKIIALLRAFGARNDAFGVGTNLTTAKPRPPL 335
Query: 133 GCVYKLVEINGMPRIKLSQDVGKVAVSD 160
VYKLVE+NG P K+S++ GK V
Sbjct: 336 DIVYKLVEVNGKPVAKISKNPGKKQVYR 363
>gnl|CDD|238801 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase
(NAPRTase) family. Nicotinate phosphoribosyltransferase
catalyses the formation of NAMN and PPi from
5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic
acid, this is the first, and also rate limiting,
reaction in the NAD salvage synthesis. This salvage
pathway serves to recycle NAD degradation products.
Length = 343
Score = 64.2 bits (157), Expect = 1e-12
Identities = 34/132 (25%), Positives = 44/132 (33%), Gaps = 48/132 (36%)
Query: 53 SDGELAALISYAIAFP----DGFMALVDTYDVKRYNIPWFAELQ---------------- 92
E AA ++A P +AL+DTYD +L
Sbjct: 213 GALEEAAFEAFARWLPQFGGGLGIALIDTYDTDN-GFLNALKLAKALGAGGGLLGVRLDS 271
Query: 93 -------------------------IVASNDIN-EETILSLNEQGHR-IDCFGIGTHLVT 125
I+ S D++ EE I L EQG D FG+GT L
Sbjct: 272 GDPVELIKKVRKHLDELGIDLNKKKIIISGDLDTEEAIELLLEQGASPNDAFGVGTSLTN 331
Query: 126 CQRQPALGCVYK 137
+P LG VYK
Sbjct: 332 DLGRPPLGFVYK 343
>gnl|CDD|202885 pfam04095, NAPRTase, Nicotinate phosphoribosyltransferase
(NAPRTase) family. Nicotinate phosphoribosyltransferase
(EC:2.4.2.11) is the rate limiting enzyme that catalyzes
the first reaction in the NAD salvage synthesis. This
family also includes Pre-B cell enhancing factor that is
a cytokine. This family is related to Quinolinate
phosphoribosyltransferase pfam01729.
Length = 245
Score = 62.8 bits (153), Expect = 2e-12
Identities = 38/145 (26%), Positives = 55/145 (37%), Gaps = 21/145 (14%)
Query: 37 WRNKISPILDVLTDE-ASDGELAALISYAIAF-PD-GFMALVDTYDVKRY---NIPWFAE 90
W + + LTD +D L Y + PD G + + NI +
Sbjct: 87 WLAEYGNLGIALTDLVGTDAFLRDFPLYFLGVRPDSGDPVEWGEKLIAHFGSTNIDGYKV 146
Query: 91 LQ---IVASNDINEETILSLNEQGHRIDC---FGIGTHLVTCQRQPALGCVY-------- 136
++ S+ ++ E I+ + E FGIGT+L + LG Y
Sbjct: 147 NPTKRLIFSDGLDVEKIIEILEHLKGNGFNIAFGIGTNLTQDLNRDTLGFAYKLTPLNIV 206
Query: 137 -KLVEINGMPRIKLSQDVGKVAVSD 160
KLVE+NG P KLS GK D
Sbjct: 207 IKLVEVNGDPVTKLSDSSGKGRCGD 231
>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II;
This family contains two enzymes that play an important
role in NAD production by either allowing quinolinic
acid (QA) , quinolinate phosphoribosyl transferase
(QAPRTase), or nicotinic acid (NA), nicotinate
phosphoribosyltransferase (NAPRTase), to be used in the
synthesis of NAD. QAPRTase catalyses the reaction of
quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide, an important step in
the de novo synthesis of NAD. NAPRTase catalyses a
similar reaction leading to NAMN and pyrophosphate,
using nicotinic acid an PPRP as substrates, used in the
NAD salvage pathway.
Length = 281
Score = 56.1 bits (136), Expect = 7e-10
Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 42/122 (34%)
Query: 53 SDGELAALISYAIAFPDGFMALVDTYD--------------------------------- 79
+ GELAA+ + P+ F+AL+D
Sbjct: 165 AFGELAAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEELDPAVL 224
Query: 80 ----VKRYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCV 135
+ ++I AS ++EE I + E G +D FG+GT L + P L V
Sbjct: 225 ILKARAHLDGKGLPRVKIEASGGLDEENIRAYAETG--VDVFGVGTLLHSA---PPLDIV 279
Query: 136 YK 137
K
Sbjct: 280 LK 281
>gnl|CDD|235406 PRK05321, PRK05321, nicotinate phosphoribosyltransferase;
Provisional.
Length = 400
Score = 49.4 bits (119), Expect = 2e-07
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 93 IVASNDINEETILSLNEQGH-RIDC-FGIGTHLVTC--QRQPALGCVYKLVEINGMPRIK 148
+V S+ ++ + L L RI FGIGT+L T L V KLVE NG P K
Sbjct: 310 LVFSDGLDFDKALELYRHFKGRIKLSFGIGTNL-TNDFPGVKPLNIVIKLVECNGRPVAK 368
Query: 149 LSQDVGK 155
LS GK
Sbjct: 369 LSDSPGK 375
>gnl|CDD|238695 cd01401, PncB_like, Nicotinate phosphoribosyltransferase
(NAPRTase), related to PncB. Nicotinate
phosphoribosyltransferase catalyses the formation of
NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
(PRPP) and nicotinic acid, this is the first, and also
rate limiting, reaction in the NAD salvage synthesis.
This salvage pathway serves to recycle NAD degradation
products. This subgroup is present in bacteria, archea
and funghi.
Length = 377
Score = 44.9 bits (107), Expect = 6e-06
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 93 IVASNDINEETILSLNEQ-GHRIDC-FGIGTHL----VTCQRQPALGCVYKLVEINGMPR 146
+V S+ ++ E L L E RI FGIGT+L ++ L V KLVE NG P
Sbjct: 307 LVFSDGLDVEKALELYEYFKGRIKVSFGIGTNLTNDFGNKEKSTPLNIVIKLVECNGRPV 366
Query: 147 IKLSQDVGK 155
K+S GK
Sbjct: 367 AKISDSPGK 375
>gnl|CDD|130578 TIGR01514, NAPRTase, nicotinate phosphoribosyltransferase. This
model represents nicotinate phosphoribosyltransferase,
the first enzyme in the salvage pathway of NAD
biosynthesis from nicontinate (niacin). Members are
primary proteobacterial but also include yeasts and
Methanosarcina acetivorans. A related family, apparently
non-overlapping in species distribution, is TIGR01513.
Members of that family differ in substantially in
sequence and have a long C-terminal extension missing
from this family, but are proposed also to act as
nicotinate phosphoribosyltransferase (see model
TIGR01513) [Biosynthesis of cofactors, prosthetic
groups, and carriers, Pyridine nucleotides].
Length = 394
Score = 36.3 bits (84), Expect = 0.005
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 117 FGIGTHLVTC---QRQPALGCVYKLVEINGMPRIKLSQDVGK 155
FGIGT+L T + +P L V KLVE NG P KLS GK
Sbjct: 336 FGIGTNL-TNDFGKVEP-LNIVIKLVECNGNPVAKLSDSPGK 375
>gnl|CDD|238805 cd01571, NAPRTase_B, Nicotinate phosphoribosyltransferase
(NAPRTase), subgroup B. Nicotinate
phosphoribosyltransferase catalyses the formation of
NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
(PRPP) and nicotinic acid, this is the first, and also
rate limiting, reaction in the NAD salvage synthesis.
This salvage pathway serves to recycle NAD degradation
products.
Length = 302
Score = 36.1 bits (84), Expect = 0.005
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 93 IVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLVEINGMPRIK 148
I S ++EE I L + G +D FG+GT + P + +VE+NG P K
Sbjct: 248 IFVSGGLDEEDIKELEDVG--VDAFGVGTAISKA---PPVDFTMDIVEVNGQPIAK 298
>gnl|CDD|235953 PRK07188, PRK07188, nicotinate phosphoribosyltransferase;
Provisional.
Length = 352
Score = 29.1 bits (66), Expect = 1.3
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 92 QIVASNDINEETILSLNEQGHRIDCFGIGTHLV 124
+I+ S+ + + I Q +D +G+G+ L+
Sbjct: 282 KIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLL 314
>gnl|CDD|180391 PRK06083, PRK06083, sulfur carrier protein ThiS; Provisional.
Length = 84
Score = 26.8 bits (59), Expect = 2.5
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 98 DINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKL 138
+ TI S+N+Q ++D ++ P LGCV+ +
Sbjct: 15 AMVLITI-SINDQSIQVDISSSLAQIIAQLSLPELGCVFAI 54
>gnl|CDD|236326 PRK08655, PRK08655, prephenate dehydrogenase; Provisional.
Length = 437
Score = 28.0 bits (63), Expect = 2.7
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 129 QPALGCVYKLVEINGMPRIKLSQDVGKVAVSDHLYS 164
+ ALG K + KL + +GK H+YS
Sbjct: 275 ERALGRSDKAIYALNQEFEKLLKSIGKEIGLKHIYS 310
>gnl|CDD|132324 TIGR03281, methan_mark_12, putative methanogenesis marker protein
12. Members of this protein family, to date, are found
in a completed prokaryotic genome if and only if the
species is one of the archaeal methanogens. The exact
function is unknown, but likely is linked to
methanogenesis or a process closely connected to it
[Energy metabolism, Methanogenesis].
Length = 326
Score = 27.8 bits (62), Expect = 3.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 8 LSYLSSLFSQTIQDRASGQDADLLALSISWRNKISPILDV 47
LS L S ++DR + ++ DL+AL+ S + IS I +
Sbjct: 31 LSEKEILESDELEDRVALEEIDLIALTYSMGDGISKITPI 70
>gnl|CDD|219274 pfam07030, DUF1320, Protein of unknown function (DUF1320). This
family consists of both hypothetical bacterial and
phage proteins of around 145 residues in length. The
function of this family is unknown.
Length = 128
Score = 26.8 bits (60), Expect = 3.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 45 LDVLTDEASDGEL-AALISYAIAFPDGFMALVDTYDVKRYNIP 86
L LTD GE+ A++ A+A A +D Y RY +P
Sbjct: 16 LIQLTDREPTGEIDPAVVERALADAS---AEIDGYLRGRYALP 55
>gnl|CDD|151746 pfam11305, DUF3107, Protein of unknown function (DUF3107). Some
members in this family of proteins are annotated as
ATP-binding proteins however this cannot be confirmed.
Currently no function is known.
Length = 74
Score = 26.0 bits (58), Expect = 3.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 47 VLTDEASDGELAALISYAIAFPDGFMALVDT 77
V S E+ AL++ A+A G ++L D
Sbjct: 15 VFESAQSPEEVEALVAEALADGSGVLSLTDD 45
>gnl|CDD|166510 PLN02869, PLN02869, fatty aldehyde decarbonylase.
Length = 620
Score = 27.5 bits (61), Expect = 4.3
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 75 VDTYDVKRYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGI 119
+ T+ + +Y I + + Q + N + EE IL +++G ++ G+
Sbjct: 360 LQTWVIPKYKIQYLLKWQNESINSLIEEAILEADKRGVKVLSLGL 404
>gnl|CDD|173277 PRK14816, PRK14816, NADH dehydrogenase subunit B; Provisional.
Length = 182
Score = 26.8 bits (59), Expect = 5.1
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 22 RASGQDADLLALSISWRNKISPILDVLTDEASD 54
RAS + AD++ + + NK++P+L L D+ +D
Sbjct: 76 RASPRQADMIMVCGTITNKMAPVLKRLYDQMAD 108
>gnl|CDD|221331 pfam11940, DUF3458, Domain of unknown function (DUF3458). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is typically between 402 to 419 amino acids
in length. This domain is found associated with
pfam01433. This domain has a conserved FSAPV sequence
motif.
Length = 365
Score = 26.7 bits (60), Expect = 7.1
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 13 SLFSQTIQDRASG-QDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIAFP--D 69
L + + +G Q L L I +L D++ D A + + P
Sbjct: 107 QLARRELLALIAGAQAGQPLELDARL---IDAFRALLADDSLD---PAFRALLLTLPSEA 160
Query: 70 GFMALVDTYDV 80
+ D
Sbjct: 161 ELAEQMKVVDP 171
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,180,349
Number of extensions: 849762
Number of successful extensions: 643
Number of sequences better than 10.0: 1
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 35
Length of query: 180
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 89
Effective length of database: 6,901,388
Effective search space: 614223532
Effective search space used: 614223532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)