RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15542
(180 letters)
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
genomics, PSI; 2.00A {Enterococcus faecalis} SCOP:
c.1.17.1 d.41.2.1
Length = 494
Score = 129 bits (326), Expect = 7e-36
Identities = 47/147 (31%), Positives = 64/147 (43%), Gaps = 45/147 (30%)
Query: 54 DGELAALISYAIAFPDGFMALVDTYDV--------------------------------- 80
+ A ++YA D + LVDTYD
Sbjct: 212 GNDYEAFMAYAKTHRD-CVFLVDTYDTLKAGVPSAIRVAREMGDKINFLGVRIDSGDMAY 270
Query: 81 ------KRYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGC 134
++ + F E +I ASND++E TIL+L Q +ID +G+GT L+T QPALG
Sbjct: 271 ISKRVREQLDEAGFTEAKIYASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGA 330
Query: 135 VYKLVEING-----MPRIKLSQDVGKV 156
V+KLV I G IKLS + KV
Sbjct: 331 VFKLVSIEGEDGQMKDTIKLSSNAEKV 357
Score = 26.6 bits (59), Expect = 5.0
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 155 KVAVSDHLYSFIHELWLQ 172
V +S ++ L +
Sbjct: 461 PVDLSTDCWNHKMNLLEK 478
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M
structural genomics, PSI, protein structure initiative;
2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A*
1ytk_A
Length = 398
Score = 115 bits (291), Expect = 2e-31
Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 43/141 (30%)
Query: 53 SDGELAALISYAIAFPDGFMALVDTYDV-------------------------------- 80
D E L + L+DTY
Sbjct: 195 GDEEAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRLDTPSSRRGNFEA 254
Query: 81 ------KRYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGC 134
+ ++++I+ S ++E T+ L E G + FG+GT + +
Sbjct: 255 LIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGA--EAFGVGTSISSA---KPFDF 309
Query: 135 VYKLVEINGMPRIKLSQDVGK 155
+VE+NG P K + G+
Sbjct: 310 AMDIVEVNGKPETKRGKMSGR 330
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding,
phosphoribosylpyrophosphate, Zn metal ION, structural
genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus}
SCOP: c.1.17.1 d.41.2.1
Length = 395
Score = 99.7 bits (249), Expect = 2e-25
Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 47/143 (32%)
Query: 54 DGELAALISYAIAFPDGF--MALVDTYDV------------------------------- 80
++ A + + +ALVDT+
Sbjct: 191 GDQVKAWKYFDEVIEEEVPRIALVDTFYDEKVEAVMAAEALGKKLFAVRLDTPSSRRGNF 250
Query: 81 --------KRYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPAL 132
+ + ++I S ++EE I + + +D FG+G + + +
Sbjct: 251 RKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDV---VDAFGVGGAIASA---KPV 304
Query: 133 GCVYKLVEINGMPRIKLSQDVGK 155
+VE+ G P K + G+
Sbjct: 305 DFALDIVEVEGKPIAKRGKLSGR 327
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, joint center for structural genomics; HET: MSE
MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2
d.41.2.2
Length = 441
Score = 97.5 bits (243), Expect = 2e-24
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 92 QIVASNDINEE---TILSLNEQGHRIDCFGIGTHLVTCQRQPA--------LGCVYKLVE 140
I S+ +N E T ++ + FGIGT+ R+ + L V KL+E
Sbjct: 335 IICYSDSLNVEKAITYSHAAKENGMLATFGIGTNFTNDFRKKSEPQVKSEPLNIVIKLLE 394
Query: 141 INGMPRIKLSQDVGKV 156
+NG IK+S ++GK
Sbjct: 395 VNGNHAIKISDNLGKN 410
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, center for structural genomics of infec
diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia
pestis}
Length = 407
Score = 95.9 bits (239), Expect = 6e-24
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 89 AELQIVASNDINEETILSLNEQGHR--IDCFGIGTHLVTCQR-QPALGCVYKLVEINGMP 145
+ +V S++++ E L L ++ FGIGT L L V KLVE N P
Sbjct: 307 MKKVLVFSDNLDLEKALFLYRHFYQRIKLVFGIGTRLTCDIPDVKPLNIVIKLVECNDKP 366
Query: 146 RIKLSQDVGKV 156
KLS GK
Sbjct: 367 VAKLSDSPGKT 377
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural
genomics, protein structure initiative, hypothetical
protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa}
SCOP: c.1.17.2 d.41.2.2
Length = 408
Score = 95.1 bits (237), Expect = 1e-23
Identities = 32/152 (21%), Positives = 47/152 (30%), Gaps = 39/152 (25%)
Query: 48 LTDEASDGELAALISYAIAFPDGF-MALVDTYDVKRY---NIPWFAEL------------ 91
L D + AAL + + +AL D + +FA+L
Sbjct: 235 LGPRLIDSQSAALDCWVREYRGLLGIALTDCITTDAFLRDFDLYFAKLFDGLRHDSGDPL 294
Query: 92 --------------------QIVASNDINEETILSLNE--QGHRIDCFGIGTHLVT-CQR 128
+V S+ ++ L + QG FGIGTH
Sbjct: 295 LWAEKTIAHYLKLGIDPLTKTLVFSDGLDLPRALKIYRALQGRINVSFGIGTHFTCDLPG 354
Query: 129 QPALGCVYKLVEINGMPRIKLSQDVGKVAVSD 160
+ V K+ NG P K+S GK D
Sbjct: 355 VEPMNIVVKMSACNGHPVAKISDTPGKAQCRD 386
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC,
PSI, protein structure initiative; 2.20A {Porphyromonas
gingivalis}
Length = 394
Score = 80.6 bits (199), Expect = 2e-18
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 92 QIVASNDINEETILSLNE-QGHRIDC-FGIGTHLV--TCQRQPALGCVYKLVEI------ 141
I+ S+ + + + + + RI FGIGT+L L V KL +
Sbjct: 301 YIIFSDSLTPQRAIEIQKLCAGRIKASFGIGTNLTNDVGGGVEPLNIVMKLWKCKMTAKD 360
Query: 142 NGMPRIKLSQDVGKV 156
+ +KLS GK
Sbjct: 361 DWHYCVKLSDVDGKH 375
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2
d.41.2.2
Length = 449
Score = 80.3 bits (198), Expect = 3e-18
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 92 QIVASNDINEETILSLNEQ--GHRIDCFGIGTHLVTCQRQ---------PALGCVYKLVE 140
++ S+ ++ + I+ G FG GT+L + V K+ +
Sbjct: 340 MLIFSDGLDVDAIVDTYRHFEGRVRMSFGWGTNLTNDFAGCAPKTIASLKPISIVCKVSD 399
Query: 141 INGMPRIKLSQDVGKV 156
NG P +KLS + K
Sbjct: 400 ANGRPAVKLSDNPQKA 415
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE,
visfatin, beryllium fluoride, nicotinamide
D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo
sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A*
2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A
2g95_A 2g96_A* 2g97_A* 3g8e_A*
Length = 484
Score = 61.3 bits (148), Expect = 1e-11
Identities = 23/176 (13%), Positives = 44/176 (25%), Gaps = 66/176 (37%)
Query: 47 VLTDEASDGELAALISYAIAFPDGFMALV----DTYDVKRYNIP---------------- 86
+T D E A F +++V D Y+
Sbjct: 249 TITAWGKDHEKDAFEHIVTQFSSVPVSVVSDSYDIYNACEKIWGEDLRHLIVSRSTQAPL 308
Query: 87 -----------------------------------WFAELQIVASNDIN----EETILSL 107
L+++ + ++ +E + +
Sbjct: 309 IIRPDSGNPLDTVLKVLEILGKKFPVTENSKGYKLLPPYLRVIQGDGVDINTLQEIVEGM 368
Query: 108 NEQGHRID--CFGIGTHLVTCQRQPALGCVYKL--VEINGMPRIKL---SQDVGKV 156
++ I+ FG G L+ + L C +K V NG+ D K
Sbjct: 369 KQKMWSIENIAFGSGGGLLQKLTRDLLNCSFKCSYVVTNGLGINVFKDPVADPNKR 424
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 8e-05
Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 64/183 (34%)
Query: 26 QDADLLALSIS----WRNK-ISPILDVLTDEA--SDGELAALISYAIAFPDGFMALVDTY 78
Q A L + + ++K + P A S GE AAL S A M++
Sbjct: 1733 QPA-LTLMEKAAFEDLKSKGLIPADATF---AGHSLGEYAALASLA-----DVMSIESLV 1783
Query: 79 DV--KR-----YNIPWFAELQ----IVASNDINEETILSLNEQGHRIDCFGIGTH---LV 124
+V R +P + ++A N S +++ + +G LV
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIAINP--GRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 125 TCQRQPA--------------LGCVYKLVEI---NGMPRIKLSQDVGKVAVS-------D 160
+ L + + + + +I + ++ S
Sbjct: 1842 ----EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII----ELQKSLSLEEVEG 1893
Query: 161 HLY 163
HL+
Sbjct: 1894 HLF 1896
Score = 37.0 bits (85), Expect = 0.003
Identities = 26/214 (12%), Positives = 65/214 (30%), Gaps = 61/214 (28%)
Query: 11 LSSLFS------QTIQDRASGQDADLLALSISWRNKISPILDV---LTDEASDGELAALI 61
L L+ + ++ ++L+ ++ + L++ L + ++ + L+
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 62 SYAIAFPDGFMALVDT--YDVKRYNIPW-----FAELQ-------------IVASNDINE 101
S I+ P + ++ Y V + + + L+ +A D +
Sbjct: 233 SIPISCP--LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD-SW 289
Query: 102 ETILSLNEQGHRIDCFGIGTHLVTCQRQ-PALGCVYKLVE---------------INGMP 145
E+ + + F IG C P ++E I+ +
Sbjct: 290 ESFFVSVRKAITV-LFFIGVR---CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 146 RIKLSQDVGKV----AVSDHLYSFIHELWLQNAP 175
+ ++ V K + + L N
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVE-----ISLVNGA 374
Score = 31.2 bits (70), Expect = 0.20
Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 50/151 (33%)
Query: 10 YLSSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIAFP- 68
Y +S +Q + +RA D S ILD++ + ++ I F
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFS---------ILDIVINNP--------VNLTIHFGG 1678
Query: 69 -------DGFMALV--DTYDVKRYNIPWFAELQIVASNDI--NEETILSLNEQGHRIDCF 117
+ + A++ D K F E+ +++ +E+ +LS
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA---------- 1728
Query: 118 GIGTHLVTCQRQPALGCV----YKLVEINGM 144
T T QPAL + ++ ++ G+
Sbjct: 1729 ---TQ-FT---QPALTLMEKAAFEDLKSKGL 1752
Score = 30.4 bits (68), Expect = 0.32
Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 34/123 (27%)
Query: 2 PSSI--LILSYLSSLF-SQTIQDRASGQDADLLALSIS-------WRNKI-SPILDVLTD 50
P++ L+ +L + S ++ GQ +L L ++ N I + +L +
Sbjct: 54 PTTPAELVGKFLG--YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 51 -EASDGELAALI-SYAIAF-----------PDGFMALVDTYDVKRYNI--------PWFA 89
+ + + LI +Y A V + + I +F
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 90 ELQ 92
EL+
Sbjct: 172 ELR 174
Score = 30.0 bits (67), Expect = 0.43
Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 56/171 (32%)
Query: 9 SYL--SSLF-SQTIQDRASGQDADLLALSISWRN---KISPILDVLTDEASD-----GEL 57
+L +S F S + + + DL+ ++S+ +I P+ D T + SD G +
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI-PVYD--TFDGSDLRVLSGSI 475
Query: 58 AALISYAIAFPDGFMALVDTYDVKRYNIPWFAELQIVASNDINEETILSLNEQGHRIDCF 117
+ I I R + W Q A+ H +D F
Sbjct: 476 SERIVDCII---------------RLPVKWETTTQFKAT---------------HILD-F 504
Query: 118 GIGTHLVTCQRQPALGC-VYKLVEINGMPRIKLSQDVGKVAVSDHLYSFIH 167
G G LG ++ + G+ R+ ++ + D Y F
Sbjct: 505 GPG-------GASGLGVLTHRNKDGTGV-RVIVAGTLDINPDDD--YGFKQ 545
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 8e-05
Identities = 34/202 (16%), Positives = 66/202 (32%), Gaps = 46/202 (22%)
Query: 8 LSYLSSLFSQTIQD-RASGQDADLLALSI-------------SWR----NKISPILDVLT 49
S L QD + LSI +W+ +K++ I++
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 50 DEASDGELAAL-ISYAIAFPDGFMALVDTYDVKRYNIP-------WFAELQIVASNDINE 101
+ E + ++ FP +IP WF ++ +N+
Sbjct: 364 NVLEPAEYRKMFDRLSV-FPP---------SA---HIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 102 ETILSLNEQGHRIDCFGI-GTHLVTCQRQPALGCVYK-LVEINGMPRIKLSQDVGKVAVS 159
SL E+ + I +L + +++ +V+ +P+ S D+ +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 160 DHLYSFI--HELWLQNAPIEEL 179
+ YS I H L+N E
Sbjct: 471 QYFYSHIGHH---LKNIEHPER 489
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose
binding protein, MBP fold, ABC transporter fold,
thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus
furiosus} SCOP: c.94.1.1
Length = 381
Score = 31.6 bits (72), Expect = 0.12
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 18/87 (20%)
Query: 10 YLSSLFSQTIQDRASGQDADLLALSISW------RNKISPILDVLTDEASDGELAALISY 63
+L +GQ DL + W + PI + +T++ +
Sbjct: 42 QKPNLEDALKAAIPTGQGPDLFIWAHDWIGKFAEAGLLEPIDEYVTEDLLN--------- 92
Query: 64 AIAFPDGFMALVDTYDVKRYNIPWFAE 90
F + Y Y +P+ AE
Sbjct: 93 --EFAPMAQDAM-QYKGHYYALPFAAE 116
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein,
sugar binding protein, virulence, alpha-glucan, sugar
transport; HET: GLC; 2.00A {Streptococcus pneumoniae}
PDB: 2xd2_A*
Length = 416
Score = 31.3 bits (71), Expect = 0.14
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 11/80 (13%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIAFPDGF 71
+ D +G D++ + SDG+L+ + A D
Sbjct: 72 LGGLDKLSLDNQNGNVPDVMMAPYDR----------VGSLGSDGQLSEVKLSDGAKTDDT 121
Query: 72 M-ALVDTYDVKRYNIPWFAE 90
+LV + K Y P E
Sbjct: 122 TKSLVTAANGKVYGAPAVIE 141
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral
protein; HET: MLR; 2.29A {Escherichia coli}
Length = 523
Score = 30.6 bits (69), Expect = 0.29
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA + A
Sbjct: 42 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPAAAFQDKLY 91
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 92 PFTWDAV-RYNGKLIAYPIAVE 112
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex,
MBP 2 fold, ABC transporter fold, thermophilic protein;
HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Length = 409
Score = 30.1 bits (68), Expect = 0.35
Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 16/88 (18%)
Query: 14 LFSQTIQDRASGQDA-DLLALSISW------RNKISPILDVLTDEASDGELAALISYAIA 66
+ D+ + ++W + P+ D + + D
Sbjct: 48 RRLDLVNALRGKSSDPDVFLMDVAWLGQFIASGWLEPLDDYVQKDNYDLS---------V 98
Query: 67 FPDGFMALVDTYDVKRYNIPWFAELQIV 94
F + L D K Y +P + + ++
Sbjct: 99 FFQSVINLADKQGGKLYALPVYIDAGLL 126
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH;
alpha-amylase inhibitors (AAI), lipid transfer (LT) and
SEED (SS) protein family; HET: MLR; 2.71A {Escherichia
coli}
Length = 500
Score = 29.4 bits (66), Expect = 0.60
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA + A
Sbjct: 41 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPAAAFQDKLY 90
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 91 PFTWDAV-RYNGKLIAYPIAVE 111
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera;
MCSG, pcsep, MBP-fused target, structural genomics; HET:
MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A*
3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A*
3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A*
2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ...
Length = 487
Score = 29.4 bits (66), Expect = 0.63
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA + A
Sbjct: 45 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPAAAFQDKLY 94
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 95 PFTWDAV-RYNGKLIAYPIAVE 115
>2vgq_A Maltose-binding periplasmic protein, mitochondrial
antiviral-signaling protein; immune system/transport,
IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Length = 477
Score = 29.4 bits (66), Expect = 0.68
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA +
Sbjct: 56 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 105
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 106 PFTWDAV-RYNGKLIAYPIAVE 126
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA
associated factor 29; histone, tudor domain, histone
binding protei; HET: MLY MAL; 1.48A {Escherichia coli}
PDB: 3mp1_A* 3mp8_A*
Length = 522
Score = 29.5 bits (66), Expect = 0.72
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA +
Sbjct: 42 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 91
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 92 PFTWDAV-RYNGKLIAYPIAVE 112
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 29.1 bits (65), Expect = 0.80
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA +
Sbjct: 41 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 90
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 91 PFTWDAV-RYNGKLIAYPIAVE 111
>1y4c_A Maltose binding protein fused with designed helical protein; de
novo designed helical protein, maltose binding protein
fusion, de novo protein; HET: GLC; 1.90A {Escherichia
coli}
Length = 494
Score = 29.0 bits (65), Expect = 0.80
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA +
Sbjct: 41 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 90
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 91 PFTWDAV-RYNGKLIAYPIAVE 111
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell
membrane protein, immunoglobulin-folding, inter
adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Length = 507
Score = 29.0 bits (65), Expect = 0.81
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA +
Sbjct: 41 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 90
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 91 PFTWDAV-RYNGKLIAYPIAVE 111
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP
fusion, AHA1/BPI domain-like, super roll, sugar T
transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Length = 568
Score = 29.1 bits (65), Expect = 0.91
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA + A
Sbjct: 41 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPAAAFQDKLY 90
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 91 PFTWDAV-RYNGKLIAYPIAVE 111
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator
protein R and maltose...; novel fold for DNA binding;
HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28
c.94.1.1
Length = 487
Score = 29.0 bits (65), Expect = 0.91
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA +
Sbjct: 41 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 90
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 91 PFTWDAV-RYNGKLIAYPIAVE 111
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate
2-O-sulfotransferase 1; maltose binding protein, fusion,
heparan sulfate biosynthesis; HET: GLC A3P; 2.65A
{Escherichia coli k-12}
Length = 658
Score = 28.8 bits (64), Expect = 0.96
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAI---AFP 68
L + Q A+G D++ + A G LA +
Sbjct: 41 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 90
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 91 PFTWDAV-RYNGKLIAYPIAVE 111
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein;
periplasmic binding protein, MBP, maltotriose; HET: MLR;
1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Length = 382
Score = 28.9 bits (65), Expect = 1.0
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA--FPD 69
+ S+ + GQ AD++ + W + + A +G + + +++ F +
Sbjct: 40 QDIKSKFLTAAPEGQGADIIVGAHDW----------VGELAVNGLIEPIPNFSDLKNFYE 89
Query: 70 GFMALVDTYDVKRYNIPWFAE 90
+ +Y K Y IP+ E
Sbjct: 90 TALNAF-SYGGKLYGIPYAME 109
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid
hormone receptor...; GPCR, extracellular domain, PTHRP,
PTH, PThr1, sugar transpo transport, membrane protein;
HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Length = 539
Score = 28.7 bits (64), Expect = 1.2
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA +
Sbjct: 43 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 92
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 93 PFTWDAV-RYNGKLIAYPIAVE 113
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane
space import AND...; disulfide bond, alpha helix,
fusion, sugar transport; HET: MAL; 3.00A {Escherichia
coli}
Length = 465
Score = 28.7 bits (64), Expect = 1.2
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA +
Sbjct: 41 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 90
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 91 PFTWDAV-RYNGKLIAYPIAVE 111
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein;
viral protein, viral membrane fusion, hairpin, chimera;
HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Length = 463
Score = 28.6 bits (64), Expect = 1.3
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA +
Sbjct: 42 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 91
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 92 PFTWDAV-RYNGKLIAYPIAVE 112
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered
binding protein, antibody mimic, synthetic protein
interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A*
3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Length = 461
Score = 28.6 bits (64), Expect = 1.3
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA +
Sbjct: 39 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 88
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 89 PFTWDAV-RYNGKLIAYPIAVE 109
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding
cooperativity, maltose binding protein, MBP, sugar
binding, DNA binding protein; 2.10A {Escherichia coli}
SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Length = 421
Score = 28.6 bits (64), Expect = 1.3
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA +
Sbjct: 41 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 90
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 91 PFTWDAV-RYNGKLIAYPIAVE 111
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2;
deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A
{Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Length = 509
Score = 28.3 bits (63), Expect = 1.4
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA +
Sbjct: 42 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 91
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 92 PFTWDAV-RYNGKLIAYPIAVE 112
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic
protein; HIV, antiviral protein; 2.80A {Escherichia
coli}
Length = 471
Score = 28.3 bits (63), Expect = 1.5
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA +
Sbjct: 55 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 104
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 105 PFTWDAV-RYNGKLIAYPIAVE 125
>3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD,
sugar transport, transport, apoptosis, cytoplasm,
disease mutation; 3.50A {Escherichia coli k-12} PDB:
3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Length = 449
Score = 28.3 bits (63), Expect = 1.5
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA +
Sbjct: 41 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 90
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 91 PFTWDAV-RYNGKLIAYPIAVE 111
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary
adenylate cyclase 1 receptor-short...; G-protein coupled
receptor; HET: MAL; 1.80A {Escherichia coli} PDB:
3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Length = 475
Score = 28.3 bits (63), Expect = 1.7
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
L + Q A+G D++ + A G LA +
Sbjct: 43 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 92
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
V Y+ K P E
Sbjct: 93 PFTWDAV-RYNGKLIAYPIAVE 113
>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus
stearothermophilus} SCOP: c.1.8.3 PDB: 3mua_A* 2q8x_A*
3msd_A* 3msg_A* 3mui_A* 3ms8_A
Length = 331
Score = 27.8 bits (62), Expect = 1.9
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 10/45 (22%)
Query: 97 NDINEET----------ILSLNEQGHRIDCFGIGTHLVTCQRQPA 131
ND NE + SL ++G I G+ H +
Sbjct: 177 NDYNECFPEKREKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLD 221
>3osq_A Maltose-binding periplasmic protein, green fluore protein;
engineered protein, sensor protein, fluorescent protein,
MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia
coli}
Length = 661
Score = 27.8 bits (61), Expect = 2.3
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 14/89 (15%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAI---AFP 68
L + Q A+G D++ + A G LA +
Sbjct: 77 DKLEEKFPQVAATGDGPDIIFWAHDR----------FGGYAQSGLLAEITPDKAFQDKLY 126
Query: 69 DGFMALVDTYDVKRYNIPWFAELQIVASN 97
V Y+ K P E + N
Sbjct: 127 PFTWDAV-RYNGKLIAYPIAVEALSLIYN 154
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 27.4 bits (60), Expect = 2.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 35 ISWRNKISPILDVLTDE----ASDGELAALI 61
I WRN S +L TD A DG LA ++
Sbjct: 236 IGWRNDASHLLVFTTDAKTHIALDGRLAGIV 266
>3emz_A Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 barrel, GH10 enzyme
complex, hydrolase; HET: HXH; 2.08A {Bacillus SP} PDB:
3emq_A* 3emc_A*
Length = 331
Score = 27.0 bits (60), Expect = 3.5
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 10/45 (22%)
Query: 97 NDINEET----------ILSLNEQGHRIDCFGIGTHLVTCQRQPA 131
ND NE + SL +QG + G+ H
Sbjct: 176 NDYNETDPVKREKIYNLVRSLLDQGAPVHGIGMQGHWNIHGPSMD 220
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein,
thermoph protein, periplasmic binding protein, sugar
binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Length = 386
Score = 27.0 bits (60), Expect = 3.8
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 19/86 (22%)
Query: 12 SSLFSQTIQDRASGQDADL-LALSISW------RNKISPILDVLTDEASDGELAALISYA 64
+ + + I GQ ADL + + W + P+ +T
Sbjct: 40 AEIKQKFILGAPQGQAADLVVTVPHDWVGEMAQAGVLEPVGKYVTQAYLAD--------- 90
Query: 65 IAFPDGFMALVDTYDVKRYNIPWFAE 90
+ T+ + +P FAE
Sbjct: 91 --LQGVAVEAF-TFGGRLMGLPAFAE 113
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter,
acarbose-binding protein, transport protein; 1.35A
{Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Length = 412
Score = 27.0 bits (60), Expect = 4.0
Identities = 10/86 (11%), Positives = 24/86 (27%), Gaps = 19/86 (22%)
Query: 12 SSLFSQTIQDRASGQDA-DLLALSISW------RNKISPILDVLTDEASDGELAALISYA 64
++ A D++ ++W ++P L + + +
Sbjct: 68 GEANAKFKNAAGGNSGAPDVMRTEVAWVADFASIGYLAP----LDGTPALDDGSD----- 118
Query: 65 IAFPDGFMALVDTYDVKRYNIPWFAE 90
A Y+ K Y +P +
Sbjct: 119 --HLPQAAAST-RYEGKTYAVPQVID 141
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC;
1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A*
2zyn_A* 2dfz_A*
Length = 397
Score = 27.0 bits (60), Expect = 4.2
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 14/82 (17%)
Query: 12 SSLFSQTIQDRASGQDADLLALSISWRNKISPILDVLTDEASDGELAALISYAIA---FP 68
+ D +G+ ADL+ L + + G L + F
Sbjct: 59 LKQQEKLTLDGPAGKGADLVTWPHDR----------LGEAVTKGLLQPIQVDNSVKNQFD 108
Query: 69 DGFMALVDTYDVKRYNIPWFAE 90
D M + TY K Y +P E
Sbjct: 109 DVAMKAL-TYGGKLYGLPKAIE 129
>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan
degradation, xylanase structure, glycosidase,
alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A
2fgl_A*
Length = 356
Score = 26.8 bits (59), Expect = 4.9
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 10/37 (27%)
Query: 97 NDINEET----------ILSLNEQGHRIDCFGIGTHL 123
ND N E + L EQG ID G +H+
Sbjct: 191 NDYNTEVPSKRDDLYNLVKDLLEQGVPIDGVGHQSHI 227
>2dep_A Xylanase B, thermostable celloxylanase; glycosidase, xylan
degradation, family 10, structural genomics, NPPSFA;
1.80A {Clostridium stercorarium}
Length = 356
Score = 26.7 bits (59), Expect = 5.0
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 10/37 (27%)
Query: 97 NDINEE----------TILSLNEQGHRIDCFGIGTHL 123
ND N + + +L E+G ID G TH+
Sbjct: 190 NDYNTDDPVKRDILYELVKNLLEKGVPIDGVGHQTHI 226
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA
repair, endonuclease, helix-hairpin-helix, DNA binding
protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
PDB: 2kn7_A*
Length = 63
Score = 24.6 bits (54), Expect = 5.7
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 138 LVEINGMPRIKLSQDVGKVAVSDHLYSFIHE 168
+ E+ + + +L+ +G A + LY FIH
Sbjct: 27 IAELAALSQDELTSILGNAANAKQLYDFIHT 57
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein,
periplasmic-binding protein, maltose, SUG binding
protein; 2.20A {Xanthomonas axonopodis PV}
Length = 458
Score = 26.3 bits (58), Expect = 6.2
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 15/74 (20%)
Query: 23 ASGQDADLLALSISW------RNKISPILDVLTDEASDGELAALISYAIAFPDGFMALVD 76
A+ D+ L +W + + P+ + + G
Sbjct: 79 AADGLPDVCQLGNTWLPEFALLDTLEPMQPYVARSKIVDPAD--------YFPGVWDTN- 129
Query: 77 TYDVKRYNIPWFAE 90
D Y +PW+ +
Sbjct: 130 LVDGTLYGVPWYVD 143
>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase,
hemicellulose, xylan degradation; HET: XYS AHR; 1.43A
{Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A*
1ur2_A* 2cnc_A*
Length = 378
Score = 26.4 bits (58), Expect = 6.6
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 10/41 (24%)
Query: 97 NDINEET----------ILSLNEQGHRIDCFGIGTHLVTCQ 127
ND N E I L ++G I GI HL
Sbjct: 198 NDYNIERTGKREATVEMIERLQKRGMPIHGLGIQGHLGIDT 238
>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus
stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A*
3mmd_A* 1r86_A
Length = 379
Score = 26.0 bits (57), Expect = 7.1
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 10/39 (25%)
Query: 97 NDINEET----------ILSLNEQGHRIDCFGIGTHLVT 125
ND N E + L E+G ID G +H+
Sbjct: 201 NDYNTEVEPKRTALYNLVKQLKEEGVPIDGIGHQSHIQI 239
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Bacillus subtilis}
Length = 246
Score = 25.7 bits (56), Expect = 7.9
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 117 FGIGTHLVTCQRQPALGCVYKLVEINGMPRIKLSQDVG 154
G+ TH +P +G ++I G + +VG
Sbjct: 126 MGVATHAAFFLGKPTIGIAKTYLKIKGCDFVTPEIEVG 163
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,711,846
Number of extensions: 155882
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 59
Length of query: 180
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 92
Effective length of database: 4,244,745
Effective search space: 390516540
Effective search space used: 390516540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)