RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15542
(180 letters)
>d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 255
Score = 95.0 bits (236), Expect = 6e-25
Identities = 26/148 (17%), Positives = 38/148 (25%), Gaps = 39/148 (26%)
Query: 48 LTDEASDGELAALISYAIAFPDGF-MALVDTYDV-------------------------- 80
L D + AAL + + +AL D
Sbjct: 91 LGPRLIDSQSAALDCWVREYRGLLGIALTDCITTDAFLRDFDLYFAKLFDGLRHDSGDPL 150
Query: 81 ----------KRYNIPWFAELQIVASNDINEETILSLNEQGHRI-DCFGIGTHLVTCQR- 128
+ I + + + + RI FGIGTH
Sbjct: 151 LWAEKTIAHYLKLGIDPLTKTLVFSDGLDLPRALKIYRALQGRINVSFGIGTHFTCDLPG 210
Query: 129 QPALGCVYKLVEINGMPRIKLSQDVGKV 156
+ V K+ NG P K+S GK
Sbjct: 211 VEPMNIVVKMSACNGHPVAKISDTPGKA 238
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase,
C-terminal domain {Agrobacterium tumefaciens [TaxId:
358]}
Length = 266
Score = 93.1 bits (231), Expect = 3e-24
Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 46/158 (29%)
Query: 45 LDVLTDEASDGELAALISYAIAFPDGFM-ALVDTYDVKRYN------------------- 84
L +E + L + + + L D + +
Sbjct: 91 LAQTNEELAAAPYQVLKDWNRLYGGNLLIVLPDAFGTAAFLRNAPEWVADWTGFRPDSAP 150
Query: 85 --------IPWFAEL-------QIVASNDINEETILSLNEQ--GHRIDCFGIGTHLV--- 124
I W+ ++ ++ S+ ++ + I+ G FG GT+L
Sbjct: 151 PIEGGEKIIEWWRKMGRDPRTKMLIFSDGLDVDAIVDTYRHFEGRVRMSFGWGTNLTNDF 210
Query: 125 ------TCQRQPALGCVYKLVEINGMPRIKLSQDVGKV 156
T + V K+ + NG P +KLS + K
Sbjct: 211 AGCAPKTIASLKPISIVCKVSDANGRPAVKLSDNPQKA 248
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 266
Score = 92.0 bits (228), Expect = 1e-23
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 21/113 (18%)
Query: 54 DGELAALISYAIAFPDGFMALVDTYDVKRYNIPWFAELQIVASNDINEE--TILSLNEQG 111
G+ +P F+++ + + E+ T ++
Sbjct: 148 SGDPVEYTKKISHHYH-----------DVLKLPKFSKIICYSDSLNVEKAITYSHAAKEN 196
Query: 112 HRIDCFGIGTHLVTCQRQ--------PALGCVYKLVEINGMPRIKLSQDVGKV 156
+ FGIGT+ R+ L V KL+E+NG IK+S ++GK
Sbjct: 197 GMLATFGIGTNFTNDFRKKSEPQVKSEPLNIVIKLLEVNGNHAIKISDNLGKN 249
>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate
phosphoribosyltransferase EF2626 {Enterococcus faecalis
[TaxId: 1351]}
Length = 345
Score = 89.3 bits (221), Expect = 3e-22
Identities = 47/149 (31%), Positives = 65/149 (43%), Gaps = 45/149 (30%)
Query: 52 ASDGELAALISYAIAFPDGFMALVDTYDV------------------------------- 80
+ + A ++YA D + LVDTYD
Sbjct: 70 SYGNDYEAFMAYAKTHRD-CVFLVDTYDTLKAGVPSAIRVAREMGDKINFLGVRIDSGDM 128
Query: 81 --------KRYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPAL 132
++ + F E +I ASND++E TIL+L Q +ID +G+GT L+T QPAL
Sbjct: 129 AYISKRVREQLDEAGFTEAKIYASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPAL 188
Query: 133 GCVYKLVEING-----MPRIKLSQDVGKV 156
G V+KLV I G IKLS + KV
Sbjct: 189 GAVFKLVSIEGEDGQMKDTIKLSSNAEKV 217
>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase
Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Length = 270
Score = 78.9 bits (194), Expect = 1e-18
Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 13/136 (9%)
Query: 28 ADLLALSISWRNKISPILDVLTDEASDGELAALISYAIAF-------PD-GFMALVDTYD 79
L + K ++D DE A + + + G +
Sbjct: 75 WKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRLDTPSSRRGNFEALIREV 134
Query: 80 VKRYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYKLV 139
+ ++++I+ S ++E T+ L E G + FG+GT + + +V
Sbjct: 135 RWELALRGRSDIKIMVSGGLDENTVKKLREAG--AEAFGVGTSISSA---KPFDFAMDIV 189
Query: 140 EINGMPRIKLSQDVGK 155
E+NG P K + G+
Sbjct: 190 EVNGKPETKRGKMSGR 205
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide
pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId:
2261]}
Length = 279
Score = 63.1 bits (153), Expect = 6e-13
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 78 YDVKRYNIPWFAELQIVASNDINEETILSLNEQGHRIDCFGIGTHLVTCQRQPALGCVYK 137
+ + ++I S ++EE I + + +D FG+G + + +
Sbjct: 140 EVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDV---VDAFGVGGAIASA---KPVDFALD 193
Query: 138 LVEINGMPRIKLSQDVGK 155
+VE+ G P K + G+
Sbjct: 194 IVEVEGKPIAKRGKLSGR 211
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 28.3 bits (63), Expect = 0.22
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 58 AALISYAI-AFPDGFMALVDTYDVKRYNIPWFAELQIVASNDINEETILSLNEQGHRIDC 116
ALI+ AI P+ + L Y P++ E + N I LSLN +C
Sbjct: 10 IALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHN--LSLN------EC 61
Query: 117 FGIGTHLVTCQRQPALGCVYKL 138
F + ++P G + L
Sbjct: 62 F---VKVPRDDKKPGKGSYWTL 80
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus
influenzae [TaxId: 727]}
Length = 269
Score = 25.8 bits (56), Expect = 2.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 137 KLVEINGMPRIKLSQDVGKVAVSDH 161
LV+ N +P + L VG +S
Sbjct: 14 HLVQHNDIPVLHLKHAVGTAKISLQ 38
>d1j1na_ c.94.1.1 (A:) Alginate-binding periplasmic protein AlgQ2
{Sphingomonas sp. [TaxId: 28214]}
Length = 492
Score = 25.3 bits (54), Expect = 6.1
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 23 ASGQDADLLALSISW--------RNKISPILDVLTDEASDGELAALISYAIAFPDGFMAL 74
ASG D++ P+ ++ A + ++ + P+ A+
Sbjct: 63 ASGDLPDVVGGDNLKDKFIQYGQEGAFVPLNKLIDQYAPH-----IKAFFKSHPEVERAI 117
Query: 75 VDTYDVKRYNIPWFAELQIVASNDINEE 102
D Y IP+ + + I E+
Sbjct: 118 K-APDGNIYFIPYVPDGVVARGYFIRED 144
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0555 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 646,033
Number of extensions: 27867
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 13
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)