BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15543
         (163 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative
           Nicotinate Phosphoribosyltransferase, New York
           Structural Genomics Consortium
          Length = 494

 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 17/96 (17%)

Query: 57  HALIDLLQRSTEAAPEVGSRVLCRHPFIESKRAYVIPTRVEPLHRPIPDLEQVRSRVKAS 116
           H  I+   R  EA P      + +  F+E KR Y +PT           L++++   K +
Sbjct: 401 HTFINKYVRDFEARP------VLQDIFVEGKRVYELPT-----------LDEIKQYAKEN 443

Query: 117 LRTLRQDHKRNLNPTPYKVPIHVAVSDHLYSFIHEL 152
           L +L +++KR+LNP  Y V +     +H  + + ++
Sbjct: 444 LDSLHEEYKRDLNPQKYPVDLSTDCWNHKMNLLEKV 479


>pdb|3LC6|A Chain A, The Alternative Conformation Structure Of Isocitrate
           Dehydrogenase Kinase/phosphatase From E. Coli
 pdb|3LC6|B Chain B, The Alternative Conformation Structure Of Isocitrate
           Dehydrogenase Kinase/phosphatase From E. Coli
 pdb|3LCB|A Chain A, The Crystal Structure Of Isocitrate Dehydrogenase
           KinasePHOSPHATASE In Complex With Its Substrate,
           Isocitrate Dehydrogenase, From Escherichia Coli.
 pdb|3LCB|B Chain B, The Crystal Structure Of Isocitrate Dehydrogenase
           KinasePHOSPHATASE In Complex With Its Substrate,
           Isocitrate Dehydrogenase, From Escherichia Coli
          Length = 578

 Score = 27.3 bits (59), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 10/71 (14%)

Query: 62  LLQRSTEAAPEVGSRVLCRHPFIESKRAYVIPTRVEPLHRPIPDLE--QVRSRVKASLRT 119
           LLQ + E   ++G +++ RH +IE         R+ PL+  +  +E  Q+R  ++     
Sbjct: 393 LLQEAAEKITDLGEQIVIRHLYIER--------RMVPLNIWLEQVEGQQLRDAIEEYGNA 444

Query: 120 LRQDHKRNLNP 130
           +RQ    N+ P
Sbjct: 445 IRQLAAANIFP 455


>pdb|3EPS|A Chain A, The Crystal Structure Of Isocitrate Dehydrogenase
           KinasePHOSPHATASE From E. Coli
 pdb|3EPS|B Chain B, The Crystal Structure Of Isocitrate Dehydrogenase
           KinasePHOSPHATASE From E. Coli
          Length = 578

 Score = 26.9 bits (58), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 10/71 (14%)

Query: 62  LLQRSTEAAPEVGSRVLCRHPFIESKRAYVIPTRVEPLHRPIPDLE--QVRSRVKASLRT 119
           LLQ + E   ++G +++ RH +IE         R+ PL+  +  +E  Q+R  ++     
Sbjct: 393 LLQEAAEKITDLGEQIVIRHLYIER--------RMVPLNIWLEQVEGQQLRDAIEEYGNA 444

Query: 120 LRQDHKRNLNP 130
           +RQ    N+ P
Sbjct: 445 IRQLAAANIFP 455


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,534,970
Number of Sequences: 62578
Number of extensions: 155581
Number of successful extensions: 269
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 4
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)