BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15543
(163 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VQX4|PNCB_DROME Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster
GN=CG3714 PE=2 SV=2
Length = 555
Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 86/142 (60%), Positives = 102/142 (71%), Gaps = 14/142 (9%)
Query: 32 KKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRAYV 91
K + +K PG K+ YRLY DGHALIDLLQ+ +E P VG +VLCRHPF ESKRAYV
Sbjct: 418 KLSQDVEKVTMPGNKNAYRLYSADGHALIDLLQKVSEPPPAVGQKVLCRHPFQESKRAYV 477
Query: 92 IPTRVEPLHR----------PIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHVAV 141
IP+ VE L++ +P LEQVR +V+ SL+TLR DHKR LNPTPYK VAV
Sbjct: 478 IPSHVESLYKVYWKSGKICQQLPTLEQVREKVQISLKTLRNDHKRTLNPTPYK----VAV 533
Query: 142 SDHLYSFIHELWLQNAPIEELS 163
SD+LY+FIH+LWLQNAPI ELS
Sbjct: 534 SDNLYNFIHDLWLQNAPIGELS 555
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 13/47 (27%)
Query: 7 TSGFDGTSNVLAGKMYNI-------------FSSLSKKKKKKKKKKK 40
T GFDGTSNVLAGK++NI FSS+ + K + K K+
Sbjct: 200 TGGFDGTSNVLAGKLFNIPVKGTHAHAYITSFSSIGELKTRLIKHKQ 246
>sp|Q95XX1|PNCB_CAEEL Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans
GN=Y54G2A.17 PE=2 SV=3
Length = 562
Score = 129 bits (325), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 92/148 (62%), Gaps = 15/148 (10%)
Query: 26 SSLSKKKKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIE 85
S+ K K + K PG+K CYR++G +G+A++DL+ E P+ ++LCRHPF E
Sbjct: 418 SAQPKIKLSQDVTKITIPGKKKCYRIFGKNGYAILDLMMLEDEPEPQPNQQILCRHPFEE 477
Query: 86 SKRAYVIPTRVEPLHR----------PIPDLEQVRSRVKASLR-TLRQDHKRNLNPTPYK 134
SKRA V ++ LH P+P L +++ V S+R TLRQDH+R LNPTPYK
Sbjct: 478 SKRALVNANKIIKLHNVYWKDGEMITPLPTLNEIKEHVNESIRSTLRQDHRRYLNPTPYK 537
Query: 135 VPIHVAVSDHLYSFIHELWLQNAPIEEL 162
V+VS+ LY F+H LWLQNAPI +L
Sbjct: 538 ----VSVSERLYQFLHTLWLQNAPIGQL 561
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 9 GFDGTSNVLAGKMYNI 24
GFD TSNVLAGK+Y I
Sbjct: 205 GFDATSNVLAGKLYGI 220
>sp|Q55G10|PNCB_DICDI Nicotinate phosphoribosyltransferase OS=Dictyostelium discoideum
GN=naprt PE=2 SV=1
Length = 589
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 82/148 (55%), Gaps = 21/148 (14%)
Query: 32 KKKKKKKKKPPPGRKDCYRLYGGDGHALIDLL-------QRSTEAAPEVGSRVLCRHPFI 84
K ++ K PGRK YRL+G +GH L+DLL + ++ P+VG +VLC HPF
Sbjct: 445 KLSQEANKITLPGRKTAYRLFGSEGHPLVDLLVDDNDMIKDGSKQIPQVGKKVLCLHPFE 504
Query: 85 ESKRAYVIPTRVEPLHR----------PIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYK 134
E KR V P ++E LH P+P L +R + +R+DH RN NPTPYK
Sbjct: 505 EQKRVIVTPVQIEKLHHIVFEKGQLTMPLPALNDIREYCFQQISKVREDHLRNSNPTPYK 564
Query: 135 VPIHVAVSDHLYSFIHELWLQNAPIEEL 162
V+V+ L+ +H LWL + PI+E+
Sbjct: 565 ----VSVTKELFDTLHNLWLDSVPIKEM 588
>sp|Q6XQN6|PNCB_HUMAN Nicotinate phosphoribosyltransferase OS=Homo sapiens GN=NAPRT1 PE=1
SV=2
Length = 538
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 30 KKKKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRA 89
+ K + +K+ PG K +RL G DG L+D+LQ + E P+ G + P +
Sbjct: 405 RMKLTEDPEKQTLPGSKAAFRLLGSDGSPLMDMLQLAEEPVPQAGQELRVWPPGAQEP-C 463
Query: 90 YVIPTRVEPLHR----------PIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHV 139
V P +VEPL R P+P L + R+ + SL L +H+R +P Y+ V
Sbjct: 464 TVRPAQVEPLLRLCLQQGQLCEPLPSLAESRALAQLSLSRLSPEHRRLRSPAQYQ----V 519
Query: 140 AVSDHLYSFIHELWLQNAP 158
+S+ L + ++ L +P
Sbjct: 520 VLSERLQALVNSLCAGQSP 538
>sp|Q6P3H4|PNCB_DANRE Nicotinate phosphoribosyltransferase OS=Danio rerio GN=naprt1 PE=2
SV=2
Length = 546
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 30 KKKKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESK-R 88
+ K + +K PGRK YRL DGH +D+L EAAP G + C S +
Sbjct: 403 RMKLSEDPEKSTLPGRKAVYRLLDADGHPQMDVLCLCDEAAPAAGVELQCFSLLGNSTLQ 462
Query: 89 AYVIPTRVEPLHR----------PIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIH 138
+ P +V L P+ + R R + SL+ L HKR P Y
Sbjct: 463 CSITPAQVSSLRTQVFSCGQITLPLNSASESRERAQISLQMLNPYHKRLQEPHNYT---- 518
Query: 139 VAVSDHLYSFIHEL 152
VA+S+ L+S + ++
Sbjct: 519 VALSERLHSLVSDI 532
>sp|Q6XQN1|PNCB_RAT Nicotinate phosphoribosyltransferase OS=Rattus norvegicus GN=Naprt1
PE=2 SV=1
Length = 538
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 19/138 (13%)
Query: 32 KKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGS--RVLCRHPFIESKRA 89
K ++ +K+ PG K +R +G L+DLLQ + E P+ G RV + +
Sbjct: 407 KLTEESQKETLPGSKAAFRFLVSEGSLLLDLLQLAEEPPPKAGQELRVWLQGA---QEPC 463
Query: 90 YVIPTRVEPLHR----------PIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHV 139
V P +VEPL R P+P LE+ R+ + SL LR HK+ NP Y+ V
Sbjct: 464 TVKPAQVEPLLRLYLQQGQPYEPLPSLEESRAFAQQSLSRLRPAHKQLQNPAVYQ----V 519
Query: 140 AVSDHLYSFIHELWLQNA 157
A+S+ L + + L + A
Sbjct: 520 ALSEKLRALVDSLSARGA 537
>sp|Q8CC86|PNCB_MOUSE Nicotinate phosphoribosyltransferase OS=Mus musculus GN=Naprt1 PE=2
SV=1
Length = 538
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
Query: 32 KKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRAYV 91
K + +K+ PG K +R G DG L+DLLQ + E P+ G L P + V
Sbjct: 407 KLTEDPEKQTLPGSKAAFRFLGPDGSLLLDLLQLAEEPPPKAGQE-LRVWPRGTQEPCTV 465
Query: 92 IPTRVEPLHR----------PIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHVAV 141
P +VEPL R P+P L++ R + SL LR HK+ +P Y VA+
Sbjct: 466 KPAQVEPLLRLYLQQGQLCEPLPSLDESRRFAQQSLSLLRPAHKQLQSPAVYP----VAL 521
Query: 142 SDHLYSFIHEL 152
S+ L + + L
Sbjct: 522 SEKLRALVDSL 532
>sp|A5PK51|PNCB_BOVIN Nicotinate phosphoribosyltransferase OS=Bos taurus GN=NAPRT1 PE=2
SV=2
Length = 538
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 17/168 (10%)
Query: 2 MLPLGTSGFDGTSNVLAGKMYNIFSSLSKKKKK--KKKKKKPPPGRKDCYRLYGGDGHAL 59
++ +GTS G +Y + S + + K + +K+ PG K +RL G DG L
Sbjct: 375 VIGIGTSVVTCPRQPSLGCVYKLVSVGGQPRMKLTEDPEKQTLPGSKAAFRLLGSDGSLL 434
Query: 60 IDLLQRSTEAAPEVGSRVLCRHPFIESKRAYVIPTRVEPLHR----------PIPDLEQV 109
+D+LQ + E P+ G L P + V P VEPL R P+P L +
Sbjct: 435 LDVLQLAEEPPPQAGQE-LRVWPRGARESRTVRPAHVEPLLRLWVQQGQLCEPLPSLAES 493
Query: 110 RSRVKASLRTLRQDHKRNLNPTPYKVPIHVAVSDHLYSFIHELWLQNA 157
R+ + SL L H+R P Y+ VA+S+ L + + L + A
Sbjct: 494 RAFAQQSLHRLSPAHRRLEQPALYQ----VALSEKLQALVDRLSARGA 537
>sp|Q9C6A9|CCA32_ARATH Cyclin-A3-2 OS=Arabidopsis thaliana GN=CYCA3-2 PE=2 SV=1
Length = 372
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 27/131 (20%)
Query: 9 GFDGT----SNVLAGKMYNI-----FSSLSKKKKKKKKKK--KPPPGRKDCYRLYGGDGH 57
G DG V+ G++ N+ ++L++KK+ +K K+ KPPP ++
Sbjct: 24 GIDGDRVNKKRVVLGELLNVSNVNLLANLNQKKETQKPKRNLKPPPAKQ-----IKSAPV 78
Query: 58 ALIDLLQRSTEAAPEVGSRV----LCRHPFIESKRAYVIPTRVEPLHRPIPD-LEQVRSR 112
A+IDL E+ ++ SR +C P++ Y+ V+P RP+PD +E+V+
Sbjct: 79 AIIDL-----ESKSDIDSRSDDPQMC-GPYVADIYEYLRQLEVKPKQRPLPDYIEKVQKD 132
Query: 113 VKASLRTLRQD 123
V S+R + D
Sbjct: 133 VTPSMRGVLVD 143
>sp|B0BZL2|ATPA1_ACAM1 ATP synthase subunit alpha 1 OS=Acaryochloris marina (strain MBIC
11017) GN=atpA1 PE=3 SV=1
Length = 505
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 21 MYN------IFSSLSKKKKKKKKKK---KPPPGRKDCYRLYGGDGHALID-LLQRSTEAA 70
MYN I+ LSK+ + ++ + PPGR+ Y GD L LL+R+ + +
Sbjct: 251 MYNGKHTLVIYDDLSKQAQAYRQMSLLLRRPPGRE----AYPGDVFYLHSRLLERAAKLS 306
Query: 71 PEVGSRVLCRHPFIESKRAYV---IPTRV 96
PE+G + P +E++ V IPT V
Sbjct: 307 PELGEGSMTALPIVETQAGDVSAYIPTNV 335
>sp|Q2J750|RIMO_FRASC Ribosomal protein S12 methylthiotransferase RimO OS=Frankia sp.
(strain CcI3) GN=rimO PE=3 SV=1
Length = 523
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 41 PPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSR 76
PP R+ R +GG GH +DLL R+ APE+G+R
Sbjct: 304 PPVLRR--MRRFGGSGH-FLDLLARARALAPELGAR 336
>sp|Q24MN9|ATPA_DESHY ATP synthase subunit alpha OS=Desulfitobacterium hafniense (strain
Y51) GN=atpA PE=3 SV=1
Length = 502
Score = 32.7 bits (73), Expect = 0.93, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 21 MYN------IFSSLSKKKKKKKKKK---KPPPGRKDCYRLYGGDGHALID-LLQRSTEAA 70
MYN I+ L+K+ ++ K PPGR+ Y GD L LL+R+ + +
Sbjct: 250 MYNGKHVLIIYDDLTKQAAAYRELSLLLKRPPGRE----AYPGDVFYLHSRLLERAAKLS 305
Query: 71 PEVGSRVLCRHPFIESKRAYV---IPTRV 96
P++GS + P IE++ V IPT V
Sbjct: 306 PDLGSGSMTALPIIETQAGDVSAYIPTNV 334
>sp|B8FZ36|ATPA_DESHD ATP synthase subunit alpha OS=Desulfitobacterium hafniense (strain
DCB-2 / DSM 10664) GN=atpA PE=3 SV=1
Length = 502
Score = 32.7 bits (73), Expect = 0.93, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 21 MYN------IFSSLSKKKKKKKKKK---KPPPGRKDCYRLYGGDGHALID-LLQRSTEAA 70
MYN I+ L+K+ ++ K PPGR+ Y GD L LL+R+ + +
Sbjct: 250 MYNGKHVLIIYDDLTKQAAAYRELSLLLKRPPGRE----AYPGDVFYLHSRLLERAAKLS 305
Query: 71 PEVGSRVLCRHPFIESKRAYV---IPTRV 96
P++GS + P IE++ V IPT V
Sbjct: 306 PDLGSGSMTALPIIETQAGDVSAYIPTNV 334
>sp|Q8XT76|GLGB_RALSO 1,4-alpha-glucan branching enzyme GlgB OS=Ralstonia solanacearum
(strain GMI1000) GN=glgB PE=3 SV=1
Length = 775
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 43 PGRKDCYRLYGGDGHALI--DLLQRSTEAAPEVGSRVLCRHPFIESKRAYV 91
PG + + L G DGH L+ D + R TEA P S V PF S A++
Sbjct: 228 PGSRYKFELVGADGHLLVKADPVARRTEAPPATASVVADPLPFRWSDAAWM 278
>sp|Q7VYK0|GLGB_BORPE 1,4-alpha-glucan branching enzyme GlgB OS=Bordetella pertussis
(strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=glgB
PE=3 SV=1
Length = 731
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 43 PGRKDCYRLYGGDGHALI--DLLQRSTEAAPEVGSRVLCRHPFIESKRAYV 91
PG + +++ G DGH ++ D L R EA P S V PF + +A++
Sbjct: 190 PGARYKFQVLGADGHTVLKADPLARQAEAPPATASIVPDERPFAWTDKAWM 240
>sp|B8HPK1|ATPA_CYAP4 ATP synthase subunit alpha OS=Cyanothece sp. (strain PCC 7425 /
ATCC 29141) GN=atpA PE=3 SV=1
Length = 505
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 24 IFSSLSKKKKKKKKKK---KPPPGRKDCYRLYGGDGHALID-LLQRSTEAAPEVGSRVLC 79
++ LSK+ + ++ + PPGR+ Y GD L LL+R+ + +PE+G +
Sbjct: 260 VYDDLSKQAQAYRQMSLLLRRPPGRE----AYPGDVFYLHSRLLERAAKLSPELGEGSMT 315
Query: 80 RHPFIESKRAYV---IPTRV 96
P +E++ V IPT V
Sbjct: 316 ALPVVETQAGDVSAYIPTNV 335
>sp|Q831A3|ATPA_ENTFA ATP synthase subunit alpha OS=Enterococcus faecalis (strain ATCC
700802 / V583) GN=atpA PE=3 SV=1
Length = 518
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 21 MYN------IFSSLSKKKKKKKKKK---KPPPGRKDCYRLYGGDGHALID-LLQRSTEAA 70
MYN IF LSK+ ++ + PPGR+ Y GD L LL+R+ + +
Sbjct: 250 MYNGKHVLIIFDDLSKQAVAYRELSLLLRRPPGRE----AYPGDVFYLHSRLLERAAKLS 305
Query: 71 PEVGSRVLCRHPFIESKRAYV---IPTRV 96
E+G + PF+E++ + IPT V
Sbjct: 306 DELGGGSMTALPFVETQAGDISAYIPTNV 334
>sp|Q7W6L4|GLGB_BORPA 1,4-alpha-glucan branching enzyme GlgB OS=Bordetella parapertussis
(strain 12822 / ATCC BAA-587 / NCTC 13253) GN=glgB PE=3
SV=1
Length = 731
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 43 PGRKDCYRLYGGDGHALI--DLLQRSTEAAPEVGSRVLCRHPFIESKRAYV 91
PG + +++ G DGH ++ D L R EA P S V PF + A++
Sbjct: 190 PGARYKFQVLGADGHTVLKADPLARQAEAPPATASIVPDERPFAWTDEAWM 240
>sp|Q7WII7|GLGB_BORBR 1,4-alpha-glucan branching enzyme GlgB OS=Bordetella bronchiseptica
(strain ATCC BAA-588 / NCTC 13252 / RB50) GN=glgB PE=3
SV=1
Length = 731
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 43 PGRKDCYRLYGGDGHALI--DLLQRSTEAAPEVGSRVLCRHPFIESKRAYV 91
PG + +++ G DGH ++ D L R EA P S V PF + A++
Sbjct: 190 PGARYKFQVLGADGHTVLKADPLARQAEAPPATASIVPDERPFAWTDEAWM 240
>sp|Q1WUC8|ATPA_LACS1 ATP synthase subunit alpha OS=Lactobacillus salivarius (strain
UCC118) GN=atpA PE=3 SV=1
Length = 503
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 24 IFSSLSKKKKKKKKKK---KPPPGRKDCYRLYGGDGHALID-LLQRSTEAAPEVGSRVLC 79
++ LSK+ ++ + PPGR+ Y GD L LL+R+ + + E+G +
Sbjct: 259 VYDDLSKQADAYRELSLILRRPPGRE----AYPGDVFYLHSRLLERAAKLSDELGGGSMT 314
Query: 80 RHPFIESKRAYV---IPTRV 96
PFIE+K V IPT V
Sbjct: 315 ALPFIETKAGDVSAYIPTNV 334
>sp|Q4V8A3|DYRK3_RAT Dual specificity tyrosine-phosphorylation-regulated kinase 3
OS=Rattus norvegicus GN=Dyrk3 PE=2 SV=1
Length = 586
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 33 KKKKKKKKPPPGRKD-CYRLYGGDGHALIDLLQRSTEAAPE--VGSRVLCRHPFIE---- 85
+ ++ KK+ PPG KD L G D + I+ L+R + P + RHP+I
Sbjct: 467 RSRRGKKRGPPGSKDWAAALKGCDDYLFIEFLKRCLQWDPSARLTPAQALRHPWISKSAP 526
Query: 86 --------SKRAYVIPTRV-EPLHRPIPDLEQVRSRVKASLRT 119
S + V PT + L +P + + S++KA+L +
Sbjct: 527 RPLTTDKVSGKRVVNPTNAFQGLGSKLPPVVGIASKLKANLMS 569
>sp|A4X5X2|RUVA_SALTO Holliday junction ATP-dependent DNA helicase RuvA OS=Salinispora
tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)
GN=ruvA PE=3 SV=1
Length = 200
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 45 RKDCYRLYG---GDGHALIDLLQRSTEAAPEVGSRVLCRHP 82
R+D LYG D AL +LLQ ++ P + VL HP
Sbjct: 53 REDSLTLYGFADDDAKALFELLQTASGVGPRLAQAVLAVHP 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,501,102
Number of Sequences: 539616
Number of extensions: 2875168
Number of successful extensions: 14044
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 13966
Number of HSP's gapped (non-prelim): 65
length of query: 163
length of database: 191,569,459
effective HSP length: 108
effective length of query: 55
effective length of database: 133,290,931
effective search space: 7331001205
effective search space used: 7331001205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)