Query psy15543
Match_columns 163
No_of_seqs 101 out of 698
Neff 6.1
Searched_HMMs 46136
Date Sat Aug 17 00:00:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02885 nicotinate phosphorib 100.0 7.6E-37 1.6E-41 276.6 14.9 153 6-163 376-545 (545)
2 PRK09243 nicotinate phosphorib 99.9 2.3E-27 5.1E-32 211.9 9.5 133 6-145 314-464 (464)
3 TIGR01513 NAPRTase_put putativ 99.9 3.3E-26 7.1E-31 203.5 10.1 134 6-145 305-443 (443)
4 PRK12484 nicotinate phosphorib 99.9 2.1E-25 4.6E-30 198.4 12.2 123 13-155 317-441 (443)
5 KOG2511|consensus 99.0 5.2E-11 1.1E-15 102.9 0.9 71 27-99 342-412 (420)
6 PRK09198 putative nicotinate p 98.8 1.4E-08 2.9E-13 91.5 7.1 91 4-116 361-462 (463)
7 PHA02594 nadV nicotinamide pho 98.6 7.4E-08 1.6E-12 86.8 6.5 93 5-116 367-469 (470)
8 COG1488 PncB Nicotinic acid ph 98.1 1.5E-06 3.2E-11 77.3 1.7 70 14-114 332-405 (405)
9 PRK05321 nicotinate phosphorib 97.7 3.1E-05 6.7E-10 68.9 3.3 34 14-48 349-384 (400)
10 TIGR01514 NAPRTase nicotinate 97.3 0.00017 3.7E-09 64.1 3.2 28 14-42 349-378 (394)
11 PF04095 NAPRTase: Nicotinate 96.3 0.00029 6.3E-09 58.6 -3.3 38 15-53 200-242 (245)
12 PRK08662 nicotinate phosphorib 94.4 0.027 5.9E-07 49.2 2.3 39 9-48 289-329 (343)
13 PF09157 TruB-C_2: Pseudouridi 30.4 38 0.00082 21.3 1.7 13 48-60 30-42 (58)
14 PF13756 Stimulus_sens_1: Stim 27.9 41 0.00089 24.5 1.7 25 41-66 14-38 (112)
15 COG3824 Predicted Zn-dependent 25.7 80 0.0017 24.1 2.9 28 103-130 11-38 (136)
16 PF07197 DUF1409: Protein of u 23.4 52 0.0011 21.2 1.3 25 109-133 17-41 (51)
17 COG2846 Regulator of cell morp 22.2 1.2E+02 0.0027 25.0 3.6 41 110-154 85-129 (221)
No 1
>PLN02885 nicotinate phosphoribosyltransferase
Probab=100.00 E-value=7.6e-37 Score=276.56 Aligned_cols=153 Identities=48% Similarity=0.831 Sum_probs=139.5
Q ss_pred ccCCCCCCC---Cccce--eEEEEeCCCCceeecCCCCCCCCCCcceEEEeecCCCCeeeeEeecCCCCCCCCCCceEEe
Q psy15543 6 GTSGFDGTS---NVLAG--KMYNIFSSLSKKKKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCR 80 (163)
Q Consensus 6 ~~~~~~~~~---paL~g--KLVei~~~~PkmKlS~~~~K~T~PG~KqVyR~yd~~G~~~~DvI~l~~E~~~~~~~~l~~~ 80 (163)
|....-+|+ |+||| |||+++ |+|+||+|++++|.|+||+|||||+||.+|++.+|+|++.+|..+..+++++|+
T Consensus 376 GVGT~LvT~~~~p~l~~VyKLVe~~-g~p~~KlS~~~~K~t~PG~K~vyR~~~~~g~~~~D~i~l~~e~~~~~~~~~~~~ 454 (545)
T PLN02885 376 GIGTHLVTCYAQPALGCVYKLVEIN-GQPRIKLSEDVEKVTIPCKKRCYRLYGKEGYPLVDLMTGENEPPPKVGERILCR 454 (545)
T ss_pred ecCCccccCCCCCCCceEEEEEEEC-CeeeeEecCCCCCccCCcceEEEEEEcCCCCEEEEEEecCCCCCCCCCCceEEe
Confidence 333344554 99999 999998 999999999999999999999999998789999999999999745447899999
Q ss_pred cCCCCcceeEecCCceeeCCC------------CCCCHHHHHHHHHHHHhhccHhhhhccCCCccccCCcchhhHHHHHH
Q psy15543 81 HPFIESKRAYVIPTRVEPLHR------------PIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHVAVSDHLYSF 148 (163)
Q Consensus 81 ~p~~~~~~~~i~~~~~e~Ll~------------~~psL~~iR~~~~~~L~~Lp~~~~rl~nP~~Y~V~~~~~lS~~L~~l 148 (163)
||.++++++.+.++++++||+ +.|+|++||+|++++|++||++++|+.||++|+| ++|++||++
T Consensus 455 ~p~~~~~~~~~~~~~~~~Ll~~~~~~g~g~~~~~~~~l~~~r~~~~~~l~~l~~~~~r~~~p~~y~V----~~s~~l~~~ 530 (545)
T PLN02885 455 HPFNESKRAYVVPQRVEELLKCYWDGSSGKPREELPSLKEIRERCMKQLERMRPDHMRRLNPTPYKV----SVSAKLYDF 530 (545)
T ss_pred CCccchheeeeccccHHhhhHHHeECCCCcCcCCCCCHHHHHHHHHHHHhhCCHHHHhccCCcccee----ccCHHHHHH
Confidence 999999999999888888766 5689999999999999999999999999999999 999999999
Q ss_pred HHHHHhhcCCCccCC
Q psy15543 149 IHELWLQNAPIEELS 163 (163)
Q Consensus 149 ~~~L~~~~~~~~~~~ 163 (163)
+++|+.++++++|++
T Consensus 531 ~~~l~~~~~~~~~~~ 545 (545)
T PLN02885 531 IHFLWLNEAPVGELQ 545 (545)
T ss_pred HHHHHHhcCccccCC
Confidence 999999998988864
No 2
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=99.94 E-value=2.3e-27 Score=211.94 Aligned_cols=133 Identities=32% Similarity=0.441 Sum_probs=116.6
Q ss_pred ccCCCCCCC---Cccce--eEEEEe---CCCCceeecCCCCCCCCCCcceEEEeecCCCCeeeeEeecCCCCCCCCCCce
Q psy15543 6 GTSGFDGTS---NVLAG--KMYNIF---SSLSKKKKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRV 77 (163)
Q Consensus 6 ~~~~~~~~~---paL~g--KLVei~---~~~PkmKlS~~~~K~T~PG~KqVyR~yd~~G~~~~DvI~l~~E~~~~~~~~l 77 (163)
|..+.-+|+ |+|++ |||+++ +|+|++|+|.+.+|.|+||+|||||+|+.+|.+.+|+|++.+|.+ ++++
T Consensus 314 GvGt~L~~~~~~~~l~~v~Klv~~~g~g~w~p~~K~s~~~~K~t~pG~k~v~R~~~~~~~~~~d~i~~~~e~~---~~~~ 390 (464)
T PRK09243 314 GVGTKLVTGSDAPALGGVYKLVAIEGEGGMIPKIKLSNSPEKVTTPGRKQVYRIYDKGGKAEADVITLADEEE---EEPL 390 (464)
T ss_pred EcCccccCCCCCCccceEEEEeEecCCCCccceeecccCCCCcCCCcceEEEEEEcCCCCcceEEEeccCCCc---cccc
Confidence 444444444 99999 999998 346999999999999999999999999878999999999998853 5789
Q ss_pred EEecCCCCcceeEecCCceeeCCC----------CCCCHHHHHHHHHHHHhhccHhhhhccCCCccccCCcchhhHHH
Q psy15543 78 LCRHPFIESKRAYVIPTRVEPLHR----------PIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHVAVSDHL 145 (163)
Q Consensus 78 ~~~~p~~~~~~~~i~~~~~e~Ll~----------~~psL~~iR~~~~~~L~~Lp~~~~rl~nP~~Y~V~~~~~lS~~L 145 (163)
.|+||.++++++.+.++..++|++ +.|+|++||+|++++|++||++++||.||++|+| .+|+.|
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~G~~~~~~~~l~~~r~~~~~~l~~l~~~~~~l~~p~~y~v----~~s~~l 464 (464)
T PRK09243 391 KMFHPVHTYKSKTVKNFDAEPLLVPVMENGKRVYELPSLEEIRAYAAAQLASLPEEYKRLLNPHAYPV----DLSQAL 464 (464)
T ss_pred eeecccchhhhhcccccchhhhhHHHhcCCEEcCCCCCHHHHHHHHHHHHHhCCHHHhcccCCCceeE----EecCCC
Confidence 999999999999998776666665 7789999999999999999999999999999999 988764
No 3
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=99.93 E-value=3.3e-26 Score=203.52 Aligned_cols=134 Identities=28% Similarity=0.387 Sum_probs=111.6
Q ss_pred ccCCCCCC---CCccce--eEEEEeCCCCceeecCCCCCCCCCCcceEEEeecCCCCeeeeEeecCCCCCCCCCCceEEe
Q psy15543 6 GTSGFDGT---SNVLAG--KMYNIFSSLSKKKKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCR 80 (163)
Q Consensus 6 ~~~~~~~~---~paL~g--KLVei~~~~PkmKlS~~~~K~T~PG~KqVyR~yd~~G~~~~DvI~l~~E~~~~~~~~l~~~ 80 (163)
|..+.-+| .|+|++ |||+++ |+|++|+|++++|.|+||+|||||.|+.+|.+.+|+|++.+|..+. ++++.|+
T Consensus 305 GvGt~L~t~~~~~~l~~v~Klv~~~-G~pv~K~sd~~~K~t~pG~k~v~R~~~~~g~~~~d~i~~~~e~~~~-~~~~~~~ 382 (443)
T TIGR01513 305 GVGTSLVTASDAPALGGVYKLVAYE-GRPVMKLSENPEKSTLPGRKQVFRLYDATGKFLGDELTLADEPIED-LNQEKCT 382 (443)
T ss_pred ecCcceeecCCCCccceEEEEEeEC-CeeeEecCCCCcCccCCcceEEEEEeCCCCCeeeEEEEecCCCCcc-ccceeee
Confidence 44444443 599999 999998 9999999999999999999999999987899999999999987555 6778888
Q ss_pred cCCCCcceeEecCCceeeCCCCCCCHHHHHHHHHHHHhhccHhhhhccCCCccccCCcchhhHHH
Q psy15543 81 HPFIESKRAYVIPTRVEPLHRPIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHVAVSDHL 145 (163)
Q Consensus 81 ~p~~~~~~~~i~~~~~e~Ll~~~psL~~iR~~~~~~L~~Lp~~~~rl~nP~~Y~V~~~~~lS~~L 145 (163)
||..+.+.....-++.++++.+.+++++||+|+++||++||++++||.||++|+| .+|++|
T Consensus 383 ~~~~~~~~ll~~v~~~G~~~~~~~~l~eir~~~~~~l~~l~~~~~rl~~p~~y~v----~~s~~l 443 (443)
T TIGR01513 383 PVFAPVEPLLRLVMKNGQRVRPLPSLAEIRARAREQLSKLPPEYLRLLNPHVYPV----SLSPRL 443 (443)
T ss_pred cCCcchhcchhheeECCEEeCCCCCHHHHHHHHHHHHHhCCHHHhcccCCcccee----eccCCC
Confidence 8864433222222455677768899999999999999999999999999999999 888764
No 4
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=2.1e-25 Score=198.38 Aligned_cols=123 Identities=26% Similarity=0.339 Sum_probs=104.9
Q ss_pred CCCccce--eEEEEeCCCCceeecCCCCCCCCCCcceEEEeecCCCCeeeeEeecCCCCCCCCCCceEEecCCCCcceeE
Q psy15543 13 TSNVLAG--KMYNIFSSLSKKKKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRAY 90 (163)
Q Consensus 13 ~~paL~g--KLVei~~~~PkmKlS~~~~K~T~PG~KqVyR~yd~~G~~~~DvI~l~~E~~~~~~~~l~~~~p~~~~~~~~ 90 (163)
..|+|++ |||+++ +.|++|+|. +|.|+||+|||||.|+. |.+.+|+|++.+|..+...++++. |+
T Consensus 317 ~~p~l~~v~Klv~~~-g~pv~K~s~--~K~t~pG~k~v~R~~~~-~~~~~d~i~~~~e~~~~~~~~ll~--~v------- 383 (443)
T PRK12484 317 DAPVLDSAYKLVAYE-GRGVTKLSS--GKVTYPGRKQVFRLYEH-GTACGDVIGLHTENIPDGREPLLV--PV------- 383 (443)
T ss_pred CCCccceEEEEEEec-CCCeEEeCC--CCCCCCCceEEEEEcCC-CCceeEEEEecCCCCCCcccchhh--hh-------
Confidence 4599999 999998 999999985 89999999999999974 447999999999865432345554 42
Q ss_pred ecCCceeeCCCCCCCHHHHHHHHHHHHhhccHhhhhccCCCccccCCcchhhHHHHHHHHHHHhh
Q psy15543 91 VIPTRVEPLHRPIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHVAVSDHLYSFIHELWLQ 155 (163)
Q Consensus 91 i~~~~~e~Ll~~~psL~~iR~~~~~~L~~Lp~~~~rl~nP~~Y~V~~~~~lS~~L~~l~~~L~~~ 155 (163)
+ +.++++.+.+++++||+|++++|++||++++||.||++|+| .+|++|++++++|+.+
T Consensus 384 ~---~~G~~~~~~~~l~eir~~~~~~l~~l~~~~~~l~~p~~y~v----~~s~~l~~~~~~l~~~ 441 (443)
T PRK12484 384 M---TNGRRIQHAPTLDGARDWCEAQLAALPPEARRLVDPVAVSV----TLSGELARLRHADTAE 441 (443)
T ss_pred e---ECCEEeCCCCCHHHHHHHHHHHHHhCCHHHHhccCCcccee----eeCHHHHHHHHHHHHh
Confidence 2 33456667889999999999999999999999999999999 9999999999999875
No 5
>KOG2511|consensus
Probab=99.03 E-value=5.2e-11 Score=102.86 Aligned_cols=71 Identities=41% Similarity=0.631 Sum_probs=61.5
Q ss_pred CCCceeecCCCCCCCCCCcceEEEeecCCCCeeeeEeecCCCCCCCCCCceEEecCCCCcceeEecCCceeeC
Q psy15543 27 SLSKKKKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRAYVIPTRVEPL 99 (163)
Q Consensus 27 ~~PkmKlS~~~~K~T~PG~KqVyR~yd~~G~~~~DvI~l~~E~~~~~~~~l~~~~p~~~~~~~~i~~~~~e~L 99 (163)
.+| ||+|+|..|.|+||.|.+||+|..+|.++.|++++++|+.+.+++.++|+||+. .++.++.|..++++
T Consensus 342 sqP-iKLseDvtkvSiP~~K~~~RLfg~eG~plvdi~~~~~ep~p~~gq~l~~khp~~-~~~~~vip~~ve~l 412 (420)
T KOG2511|consen 342 SQP-IKLSEDVTKVSIPGNKIVIRLFGKEGYPLVDISDLENEPPPDPGQVLRVKHPLN-SKRAYVIPQRVEEL 412 (420)
T ss_pred cCC-cccccccceeccccchhheehhccCCchhhhHhhccCCCCCCCCceEEeecccc-ccccccchhhhHHH
Confidence 579 999999999999999999999999999999999999999888799999999987 55555555444444
No 6
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=98.78 E-value=1.4e-08 Score=91.46 Aligned_cols=91 Identities=18% Similarity=0.103 Sum_probs=65.4
Q ss_pred cCccCCCCCCC---Cccce--eEEEEe---CCCCcee---ecCCCCCCCCCCcceEEEeecCCCCeeeeEeecCCCCCCC
Q psy15543 4 PLGTSGFDGTS---NVLAG--KMYNIF---SSLSKKK---KKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPE 72 (163)
Q Consensus 4 ~~~~~~~~~~~---paL~g--KLVei~---~~~PkmK---lS~~~~K~T~PG~KqVyR~yd~~G~~~~DvI~l~~E~~~~ 72 (163)
-+|..++-+|+ |++|+ |||+++ +|+|++| .|. +|.|.||+|+|||. +|.. |++.+.++..+
T Consensus 361 ~FGvGt~l~~~~~r~t~~~a~Kl~~~~~~G~~~~v~K~P~t~~--gK~S~~G~k~v~r~---~~~~--~~v~~~~~~~~- 432 (463)
T PRK09198 361 VFGMGGALLQYVNRDTQGFAMKASAIEVNGEWRDIFKDPITDQ--GKKSKKGRLKLIKD---NGEY--RTVDLDEAGDE- 432 (463)
T ss_pred eEecCcccccCCCCCccCceEEEEEEeeCCccceeeccCcCCC--CCcCccceeEEEEc---CCcc--eEEeccccCCC-
Confidence 35666666666 99999 999875 4679999 554 79999999999996 4543 78877776432
Q ss_pred CCCceEEecCCCCcceeEecCCceeeCCCCCCCHHHHHHHHHHH
Q psy15543 73 VGSRVLCRHPFIESKRAYVIPTRVEPLHRPIPDLEQVRSRVKAS 116 (163)
Q Consensus 73 ~~~~l~~~~p~~~~~~~~i~~~~~e~Ll~~~psL~~iR~~~~~~ 116 (163)
+++++. |+ ++.++++. ..+|++||+|+.+.
T Consensus 433 -~~~lL~--~v----------~~~G~l~~-~~~l~eiR~r~~~~ 462 (463)
T PRK09198 433 -NDDLLQ--TV----------FENGKLLV-EYSLAEIRARLHAA 462 (463)
T ss_pred -ccchhh--hh----------eeCCEECC-CCCHHHHHHHHhhc
Confidence 455554 32 23345655 46799999999763
No 7
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=98.61 E-value=7.4e-08 Score=86.83 Aligned_cols=93 Identities=23% Similarity=0.205 Sum_probs=60.4
Q ss_pred CccCCCCCC---CCccce--eEEEEe---CCCCceee-cCCCCCCCCCCcceEEEeecCCCCe-eeeEeecCCCCCCCCC
Q psy15543 5 LGTSGFDGT---SNVLAG--KMYNIF---SSLSKKKK-KKKKKKKPPPGRKDCYRLYGGDGHA-LIDLLQRSTEAAPEVG 74 (163)
Q Consensus 5 ~~~~~~~~~---~paL~g--KLVei~---~~~PkmKl-S~~~~K~T~PG~KqVyR~yd~~G~~-~~DvI~l~~E~~~~~~ 74 (163)
+|..|.-+| .|++++ ||++++ +|+|++|- -.+.+|.|.||+|+ |+++ +|.+ ..|.+ ..|..+. .
T Consensus 367 fGvGt~l~q~~~rdt~g~ayKl~~~~~~G~~~~~~K~Pktd~gK~S~~Gr~~--~~~~-~g~~~~~~~~--~~e~~~~-~ 440 (470)
T PHA02594 367 FGMGGGLLQMVTRDTFKFAMKATAIKINGKWKGVFKNPKTDEGKKSKKGRLA--RVKD-GGSFKTVDGL--EEQSEAD-L 440 (470)
T ss_pred EecCccceecCCCcccCceEEEEEEecCCceeeeeccCcCCCCCccccceeE--EEEc-CCceeEeeec--ccccccc-c
Confidence 455555554 499999 999985 35677864 22348999999999 5555 5665 45665 3332221 2
Q ss_pred CceEEecCCCCcceeEecCCceeeCCCCCCCHHHHHHHHHHH
Q psy15543 75 SRVLCRHPFIESKRAYVIPTRVEPLHRPIPDLEQVRSRVKAS 116 (163)
Q Consensus 75 ~~l~~~~p~~~~~~~~i~~~~~e~Ll~~~psL~~iR~~~~~~ 116 (163)
++++. | + ++.++++.+ +||++||+|++++
T Consensus 441 ~~lL~--~-------v---~~~G~~~~~-~sl~eiR~r~~~~ 469 (470)
T PHA02594 441 NDALV--T-------Y---FDDGKLVRY-QSLAEIRERSDIQ 469 (470)
T ss_pred cchhh--e-------e---eECCEECCC-CCHHHHHHHHHhc
Confidence 34443 2 2 344567666 8999999999875
No 8
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=98.06 E-value=1.5e-06 Score=77.27 Aligned_cols=70 Identities=21% Similarity=0.169 Sum_probs=49.7
Q ss_pred CCccce--eEEEEeCCCCceeecCCCCCCCCCCcceEEEeec--CCCCeeeeEeecCCCCCCCCCCceEEecCCCCccee
Q psy15543 14 SNVLAG--KMYNIFSSLSKKKKKKKKKKKPPPGRKDCYRLYG--GDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRA 89 (163)
Q Consensus 14 ~paL~g--KLVei~~~~PkmKlS~~~~K~T~PG~KqVyR~yd--~~G~~~~DvI~l~~E~~~~~~~~l~~~~p~~~~~~~ 89 (163)
.|++++ ||||++ +.|++|+|.+ ||+|++||.++ ..++..+|.+.. ++|+. +
T Consensus 332 ~~~~~~v~Klvev~-g~p~~Kis~~------Pgkk~~~r~~~~~~~~~~~~~~~~~---------~~l~~--~------- 386 (405)
T COG1488 332 RPPLDIVYKLVEVN-GKPVAKISKN------PGKKQVYRSAFVRELLVVFGDEITY---------EPLLV--K------- 386 (405)
T ss_pred CCcceeEEEEEEEC-CccceeecCC------Cccceeecchhhhhhheeccccccc---------hhHHH--H-------
Confidence 477999 999998 9999999974 99999999885 355555554432 22221 1
Q ss_pred EecCCceeeCCCCCCCHHHHHHHHH
Q psy15543 90 YVIPTRVEPLHRPIPDLEQVRSRVK 114 (163)
Q Consensus 90 ~i~~~~~e~Ll~~~psL~~iR~~~~ 114 (163)
+ ++.+ ++.+ +|++||+|++
T Consensus 387 ~---~~~G-~~~~--~l~~ir~~~~ 405 (405)
T COG1488 387 V---FENG-LLYD--SLDEIRERAL 405 (405)
T ss_pred H---HhCC-eecC--CHHHHHHhhC
Confidence 2 3445 4445 9999999973
No 9
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=97.68 E-value=3.1e-05 Score=68.86 Aligned_cols=34 Identities=12% Similarity=-0.125 Sum_probs=31.2
Q ss_pred CCccce--eEEEEeCCCCceeecCCCCCCCCCCcceE
Q psy15543 14 SNVLAG--KMYNIFSSLSKKKKKKKKKKKPPPGRKDC 48 (163)
Q Consensus 14 ~paL~g--KLVei~~~~PkmKlS~~~~K~T~PG~KqV 48 (163)
+|+|++ |||+++ |+|+||+|++++|.|.|...-+
T Consensus 349 ~p~l~~V~KLv~~~-g~P~~KlSd~~~K~t~p~~~~~ 384 (400)
T PRK05321 349 VKPLNIVIKLVECN-GRPVAKLSDSPGKTMCDDPEFL 384 (400)
T ss_pred CCCcceEEEEEEEC-CeeeEEecCCCcccCCCCHHHH
Confidence 799999 999998 9999999999999999987653
No 10
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=97.32 E-value=0.00017 Score=64.09 Aligned_cols=28 Identities=14% Similarity=-0.069 Sum_probs=26.3
Q ss_pred CCccce--eEEEEeCCCCceeecCCCCCCCC
Q psy15543 14 SNVLAG--KMYNIFSSLSKKKKKKKKKKKPP 42 (163)
Q Consensus 14 ~paL~g--KLVei~~~~PkmKlS~~~~K~T~ 42 (163)
+|+|++ |||+++ |+|+||+|++++|.|-
T Consensus 349 ~~~l~~V~Klv~~~-g~P~~KlSd~~~K~t~ 378 (394)
T TIGR01514 349 VEPLNIVIKLVECN-GNPVAKLSDSPGKTMG 378 (394)
T ss_pred CCCcceEEEEEEEC-CccceEecCCCcccCC
Confidence 699999 999998 9999999999999984
No 11
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2.4.2.11 from EC) is the rate-limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also contains a number of closely related proteins for which a catalytic activity has not been experimentally demonstrated.; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm; PDB: 3OS4_B 1VLP_C 2F7F_A 1YIR_D 1YBE_B 2H3D_A 2H3B_B 2GVL_B 2IM5_B 2G96_B ....
Probab=96.29 E-value=0.00029 Score=58.57 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=28.7
Q ss_pred Cccce--eEEEEeCCCCceeecCCCCCCC---CCCcceEEEeec
Q psy15543 15 NVLAG--KMYNIFSSLSKKKKKKKKKKKP---PPGRKDCYRLYG 53 (163)
Q Consensus 15 paL~g--KLVei~~~~PkmKlS~~~~K~T---~PG~KqVyR~yd 53 (163)
|++++ ||++++ ++|++|+|++++|.| .++.+.++|+|.
T Consensus 200 ~~l~~v~Klv~~~-~~P~~K~S~~~~K~t~~~~~~~~~~k~vf~ 242 (245)
T PF04095_consen 200 PALNIVGKLVEIN-GQPVIKLSDDSEKGTCGDPEGIKYLKRVFE 242 (245)
T ss_dssp EEEEEEEEEEEET-TEETTBGGSSTTGSSGGGHHHHHHHHHHEC
T ss_pred ccceeCCeEEEeC-CCCCccCCCCCCCCcCCCHHHHHHHHHHhC
Confidence 55555 777777 999999999999999 345666666663
No 12
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=94.37 E-value=0.027 Score=49.20 Aligned_cols=39 Identities=13% Similarity=0.035 Sum_probs=29.1
Q ss_pred CCCCCCCccce--eEEEEeCCCCceeecCCCCCCCCCCcceE
Q psy15543 9 GFDGTSNVLAG--KMYNIFSSLSKKKKKKKKKKKPPPGRKDC 48 (163)
Q Consensus 9 ~~~~~~paL~g--KLVei~~~~PkmKlS~~~~K~T~PG~KqV 48 (163)
..-.++|.++. |+|+++ |+|++|+|..++|.-+|-.++|
T Consensus 289 s~~~~a~~lDis~~iv~~~-g~~~~K~~~~~g~~~~~~~~~~ 329 (343)
T PRK08662 289 TYISFAPPVDFSMDIVEVE-GKPIAKRGKLPGIKQVPRLKEI 329 (343)
T ss_pred ccccCCCccceEEEEEEEC-CeeeEeecCCcccccCCCHHHH
Confidence 33345688888 999998 9999999976666666655554
No 13
>PF09157 TruB-C_2: Pseudouridine synthase II TruB, C-terminal; InterPro: IPR015240 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1ZL3_A 1K8W_A 1R3F_A.
Probab=30.41 E-value=38 Score=21.33 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=10.9
Q ss_pred EEEeecCCCCeee
Q psy15543 48 CYRLYGGDGHALI 60 (163)
Q Consensus 48 VyR~yd~~G~~~~ 60 (163)
.+|+|+.+|.+++
T Consensus 30 ~vrvy~~~~~FlG 42 (58)
T PF09157_consen 30 LVRVYDEDGRFLG 42 (58)
T ss_dssp EEEEETTTTEEEE
T ss_pred eEEEECCCCEEEE
Confidence 8899988898765
No 14
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=27.89 E-value=41 Score=24.54 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=18.6
Q ss_pred CCCCcceEEEeecCCCCeeeeEeecC
Q psy15543 41 PPPGRKDCYRLYGGDGHALIDLLQRS 66 (163)
Q Consensus 41 T~PG~KqVyR~yd~~G~~~~DvI~l~ 66 (163)
..|- ++=.|+||.+|..+.|--.+.
T Consensus 14 ~~Pt-~~RARlyd~dG~Ll~DSr~l~ 38 (112)
T PF13756_consen 14 ISPT-RTRARLYDPDGNLLADSRVLY 38 (112)
T ss_pred CCCC-CceEEEECCCCCEEeeccccc
Confidence 3455 344589999999999877665
No 15
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=25.73 E-value=80 Score=24.14 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHhhccHhhhhccCC
Q psy15543 103 IPDLEQVRSRVKASLRTLRQDHKRNLNP 130 (163)
Q Consensus 103 ~psL~~iR~~~~~~L~~Lp~~~~rl~nP 130 (163)
.||+++.-.-+.+.+..||++++.+..-
T Consensus 11 aps~~~fe~La~~A~d~lP~efr~l~~~ 38 (136)
T COG3824 11 APSLERFEELASDALDHLPQEFRDLMGN 38 (136)
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHhcC
Confidence 5899999999999999999999988653
No 16
>PF07197 DUF1409: Protein of unknown function (DUF1409); InterPro: IPR010811 This represents a short conserved region (approximately 50 residues long), sometimes repeated, within a number of hypothetical Oryza sativa proteins of unknown function.
Probab=23.40 E-value=52 Score=21.19 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhccHhhhhccCCCcc
Q psy15543 109 VRSRVKASLRTLRQDHKRNLNPTPY 133 (163)
Q Consensus 109 iR~~~~~~L~~Lp~~~~rl~nP~~Y 133 (163)
||+++.+--+.||.+...+.+|..|
T Consensus 17 IrarleE~qa~i~~e~~~l~~~~~~ 41 (51)
T PF07197_consen 17 IRARLEEIQAQIPDELAKLATPAVY 41 (51)
T ss_pred HHHHHHHHHHHhhHHHHHhcChHHH
Confidence 7999999999999999988887543
No 17
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=22.20 E-value=1.2e+02 Score=25.04 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=30.3
Q ss_pred HHHHHHHHhhccHhhhhccC---C-CccccCCcchhhHHHHHHHHHHHh
Q psy15543 110 RSRVKASLRTLRQDHKRNLN---P-TPYKVPIHVAVSDHLYSFIHELWL 154 (163)
Q Consensus 110 R~~~~~~L~~Lp~~~~rl~n---P-~~Y~V~~~~~lS~~L~~l~~~L~~ 154 (163)
.+|+++||..|-+-..+..+ + ++|++ +|++-|..++++|.+
T Consensus 85 H~~hReqlpeLi~latKverVHgd~p~~p~----gl~~~L~~l~~eL~~ 129 (221)
T COG2846 85 HERHREQLPELIPLATKVERVHGDKPSCPA----GLAELLEALKEELES 129 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcch----hHHHHHHHHHHHHHH
Confidence 45777888777665554443 3 47899 999999999998863
Done!