RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15543
(163 letters)
>gnl|CDD|178473 PLN02885, PLN02885, nicotinate phosphoribosyltransferase.
Length = 545
Score = 176 bits (448), Expect = 3e-53
Identities = 66/133 (49%), Positives = 82/133 (61%), Gaps = 16/133 (12%)
Query: 43 PGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRAYVIPTRVEPLHR- 101
P +K CYRLYG +G+ L+DL+ E P+VG R+LCRHPF ESKRAYV+P RVE L +
Sbjct: 417 PCKKRCYRLYGKEGYPLVDLMTGENEPPPKVGERILCRHPFNESKRAYVVPQRVEELLKC 476
Query: 102 -----------PIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHVAVSDHLYSFIH 150
+P L+++R R L +R DH R LNPTPYK V+VS LY FIH
Sbjct: 477 YWDGSSGKPREELPSLKEIRERCMKQLERMRPDHMRRLNPTPYK----VSVSAKLYDFIH 532
Query: 151 ELWLQNAPIEELS 163
LWL AP+ EL
Sbjct: 533 FLWLNEAPVGELQ 545
Score = 32.7 bits (75), Expect = 0.080
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 9 GFDGTSNVLAGKMYNI 24
GFD TSNV AG+++ I
Sbjct: 187 GFDATSNVEAGRLFGI 202
>gnl|CDD|236426 PRK09243, PRK09243, nicotinate phosphoribosyltransferase;
Validated.
Length = 464
Score = 75.2 bits (186), Expect = 2e-16
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 32 KKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRAYV 91
K +K PGRK YR+Y G A D++ T A E + HP K V
Sbjct: 348 KLSNSPEKVTTPGRKQVYRIYDKGGKAEADVI---TLADEEEEEPLKMFHPVHTYKSKTV 404
Query: 92 IPTRVEPLHRPI----------PDLEQVRSRVKASLRTLRQDHKRNLNPTPYKV 135
EPL P+ P LE++R+ A L +L +++KR LNP Y V
Sbjct: 405 KNFDAEPLLVPVMENGKRVYELPSLEEIRAYAAAQLASLPEEYKRLLNPHAYPV 458
Score = 40.5 bits (96), Expect = 1e-04
Identities = 13/16 (81%), Positives = 13/16 (81%)
Query: 9 GFDGTSNVLAGKMYNI 24
GFD TSNVLAGK Y I
Sbjct: 181 GFDATSNVLAGKRYGI 196
>gnl|CDD|233446 TIGR01513, NAPRTase_put, putative nicotinate
phosphoribosyltransferase. A deep split separates two
related families of proteins, one of which includes
experimentally characterized examples of nicotinate
phosphoribosyltransferase, an the first enzyme of NAD
salvage biosynthesis. This model represents the other
family. Members have a different (longer) spacing of
several key motifs and have an additional C-terminal
domain of up to 100 residues. One argument suggesting
that this family represents the same enzyme is that no
species has a member of both families. Another is that
the gene encoding this protein is located near other NAD
salvage biosynthesis genes in Nostoc and in at least
four different Gram-positive bacteria. NAD and NADP are
ubiquitous in life. Most members of this family are
Gram-positive bacteria. An additional set of mutually
closely related archaeal sequences score between the
trusted and noise cutoffs [Biosynthesis of cofactors,
prosthetic groups, and carriers, Pyridine nucleotides].
Length = 443
Score = 56.2 bits (136), Expect = 5e-10
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 30 KKKKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRA 89
K + +K PGRK +RLY G L D L + E ++ C F +
Sbjct: 333 VMKLSENPEKSTLPGRKQVFRLYDATGKFLGDELTLADEPIEDLNQEK-CTPVFAPVEPL 391
Query: 90 YVIPTRVEPLHRPIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHVAVSDHL 145
+ + RP+P L ++R+R + L L ++ R LNP Y V++S L
Sbjct: 392 LRLVMKNGQRVRPLPSLAEIRARAREQLSKLPPEYLRLLNPHVYP----VSLSPRL 443
Score = 35.0 bits (81), Expect = 0.011
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 9 GFDGTSNVLAGKMYNI 24
G DGTSNVLAG++Y I
Sbjct: 172 GADGTSNVLAGRLYGI 187
>gnl|CDD|237112 PRK12484, PRK12484, nicotinate phosphoribosyltransferase;
Provisional.
Length = 443
Score = 39.3 bits (92), Expect = 4e-04
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 17/110 (15%)
Query: 43 PGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRAYVIPTRVEPLHRP 102
PGRK +RLY G A D++ TE P+ G L +R PT
Sbjct: 346 PGRKQVFRLYEH-GTACGDVIGLHTENIPD-GREPLLVPVMTNGRRIQHAPT-------- 395
Query: 103 IPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHVAVSDHLYSFIHEL 152
L+ R +A L L + +R ++P V + V +S L H
Sbjct: 396 ---LDGARDWCEAQLAALPPEARRLVDP----VAVSVTLSGELARLRHAD 438
Score = 29.7 bits (67), Expect = 0.72
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 9 GFDGTSNVLAGKMYNI 24
G GTSNVLA + Y I
Sbjct: 175 GAAGTSNVLAARQYGI 190
>gnl|CDD|238804 cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase
(NAPRTase), subgroup A. Nicotinate
phosphoribosyltransferase catalyses the formation of
NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
(PRPP) and nicotinic acid, this is the first, and also
rate limiting, reaction in the NAD salvage synthesis.
This salvage pathway serves to recycle NAD degradation
products. This subgroup is present in bacteria and
eukaryota (except funghi).
Length = 327
Score = 37.9 bits (89), Expect = 9e-04
Identities = 14/16 (87%), Positives = 15/16 (93%)
Query: 9 GFDGTSNVLAGKMYNI 24
GFDGTSNVLAGK+Y I
Sbjct: 172 GFDGTSNVLAGKLYGI 187
>gnl|CDD|224405 COG1488, PncB, Nicotinic acid phosphoribosyltransferase [Coenzyme
metabolism].
Length = 405
Score = 36.5 bits (85), Expect = 0.003
Identities = 13/19 (68%), Positives = 13/19 (68%)
Query: 9 GFDGTSNVLAGKMYNIFSS 27
GFDGTSNVLA K Y I
Sbjct: 184 GFDGTSNVLAAKKYGIKPI 202
>gnl|CDD|238801 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase
(NAPRTase) family. Nicotinate phosphoribosyltransferase
catalyses the formation of NAMN and PPi from
5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic
acid, this is the first, and also rate limiting,
reaction in the NAD salvage synthesis. This salvage
pathway serves to recycle NAD degradation products.
Length = 343
Score = 34.9 bits (81), Expect = 0.012
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 7 TSGFDGTSNVLAGKMYNIFSS 27
GF GTSNV A K I
Sbjct: 181 IGGFGGTSNVAAAKKLGIPPI 201
>gnl|CDD|133046 cd06424, UGGPase, UGGPase catalyzes the synthesis of
UDP-Glucose/UDP-Galactose. UGGPase:
UDP-Galactose/Glucose Pyrophosphorylase catalyzes the
reversible production of UDP-Glucose/UDP-Galactose and
pyrophosphate (PPi) from
Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its
dual substrate specificity distinguishes it from the
single substrate enzyme UDP-glucose pyrophosphorylase.
It may play a key role in the galactose metabolism in
raffinose oligosaccharide (RFO) metabolizing plants. RFO
raffinose is a major photoassimilate and is a
galactosylderivative of sucrose (Suc) containing a
galactose (Gal) moiety. Upon arriving at the sink
tissue, the Gal moieties of the RFOs are initially
removed by alpha-galactosidase and then are
phosphorylated to Gal-1-P. Gal-1-P is converted to
UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc
via an epimerase reaction. The UDP-Glc can be directly
utilized in cell wall metabolism or in Suc synthesis.
However, for the Suc synthesis UDP-Glc must be further
metabolized to Glc-1-P. This can be carried out either
by the UGPase in the reverse direction or by the dual
substrate PPase itself operating in the reverse
direction. According to the latter possibility, the
three-step pathway of Gal-1-P to Glc-1-P could be
carried out by a single PPase, functioning sequentially
in reverse directions separated by the epimerase
reaction.
Length = 315
Score = 30.9 bits (70), Expect = 0.27
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 27/105 (25%)
Query: 22 YNIFSSLSKKKKKKKKKKKPPPGRKDCYRLYGGDGHALI-------DLLQRSTEAAPEVG 74
YN L + K G + + G+ + L+ D L+++ A PE
Sbjct: 207 YNQLDPLLRASGKDDGDVDDKTG----FSPFPGNINQLVFSLGPYMDELEKTKGAIPE-- 260
Query: 75 SRVLCRHPFI------ESKRAYVIPTRVEPLHRPIPDLEQVRSRV 113
FI +K A+ PTR+E + + IP L + RV
Sbjct: 261 --------FINPKYKDATKTAFKSPTRLECMMQDIPLLFEEDYRV 297
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 28.2 bits (63), Expect = 0.70
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 26 SSLSKKKKKKKKKKK 40
+ KKKKKKKKKK
Sbjct: 15 KKIDVKKKKKKKKKK 29
Score = 25.8 bits (57), Expect = 4.9
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 30 KKKKKKKKKKK 40
KKKKKKKKKK
Sbjct: 20 KKKKKKKKKKN 30
Score = 25.5 bits (56), Expect = 7.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 27 SLSKKKKKKKKKKK 40
+ KKKKKKKKK K
Sbjct: 18 DVKKKKKKKKKKNK 31
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association
with pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 27.6 bits (62), Expect = 1.0
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 4 PLGTSGFDGTSNVLAGKMYNIFSSLSKKKKKKKKKKK 40
LG G + + A K+ I +KKKKKKK KK
Sbjct: 15 GLGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKK 51
>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/
3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 735
Score = 28.8 bits (65), Expect = 1.5
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 93 PTRVEPLHRPIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHVAVSDHLYSFIHEL 152
P P H PI E+ S V A+ L ++HK L P P +A + L
Sbjct: 115 PAGFVPGH-PIAGSEK--SGVHAANADLFRNHKVILTPLAETDPAALAR-------VDRL 164
Query: 153 W 153
W
Sbjct: 165 W 165
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 28.7 bits (65), Expect = 1.5
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 14/62 (22%)
Query: 42 PPGRKDCYRLYGGDG---HALIDLLQRSTEAAPEVGSRVLCRHPFIESKR----AYVIPT 94
PPGR+ Y GD H+ LL+R+ + +PE+G L P IE+ AY IPT
Sbjct: 280 PPGRE----AYPGDIFYLHS--RLLERAAKLSPELGGGSLTALPIIETLAGELSAY-IPT 332
Query: 95 RV 96
+
Sbjct: 333 NL 334
>gnl|CDD|237091 PRK12405, PRK12405, electron transport complex RsxE subunit;
Provisional.
Length = 231
Score = 27.9 bits (63), Expect = 1.9
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 1 MMLPLGTSGFDGTSNVLAGKMYNIFSSLSKKKKKKKKKKKPPPGRKDC 48
+LP G F G +LA K + K+KKK+K K P
Sbjct: 186 AILPPG--AFIGLGLLLALKNL-----IDKRKKKRKAKAAAEPALPAG 226
>gnl|CDD|202885 pfam04095, NAPRTase, Nicotinate phosphoribosyltransferase
(NAPRTase) family. Nicotinate
phosphoribosyltransferase (EC:2.4.2.11) is the rate
limiting enzyme that catalyzes the first reaction in
the NAD salvage synthesis. This family also includes
Pre-B cell enhancing factor that is a cytokine. This
family is related to Quinolinate
phosphoribosyltransferase pfam01729.
Length = 245
Score = 28.1 bits (63), Expect = 1.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 8 SGFDGTSNVLAGKMYNI 24
F GTSNVLA Y+I
Sbjct: 29 VNFLGTSNVLAAAGYSI 45
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 27.7 bits (62), Expect = 2.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 24 IFSSLSKKKKKKKKKKKPPPGRKDCY 49
IF L K+ + K+K + P +CY
Sbjct: 114 IFCLLRKQHRLKQKLRPEPLVWGECY 139
>gnl|CDD|223564 COG0490, COG0490, Putative regulatory, ligand-binding protein
related to C-terminal domains of K+ channels [Inorganic
ion transport and metabolism].
Length = 162
Score = 27.3 bits (61), Expect = 2.4
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 100 HRPIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKV------PIHVAVSDHLYSFIHEL 152
+ I DL +R A++ + ++ ++ L+P PY V + + L L
Sbjct: 100 GKTIGDL-NIRQNTGATVIAIVRNEEKILSPGPYTVLEAGDTLVVIGEETGLKRAKRFL 157
>gnl|CDD|219688 pfam07994, NAD_binding_5, Myo-inositol-1-phosphate synthase. This
is a family of myo-inositol-1-phosphate synthases.
Inositol-1-phosphate catalyzes the conversion of
glucose-6- phosphate to inositol-1-phosphate, which is
then dephosphorylated to inositol. Inositol phosphates
play an important role in signal transduction.
Length = 389
Score = 28.0 bits (63), Expect = 2.7
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 105 DLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHVAVSDHL 145
EQ RS+ K+ + + D L+ P H+ ++
Sbjct: 260 APEQFRSKEKSKSKVV-DDVSNVLDYLLGDKPDHIVPIKYV 299
>gnl|CDD|221386 pfam12029, DUF3516, Domain of unknown function (DUF3516). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is typically
between 460 to 473 amino acids in length. This domain
is found associated with pfam00270, pfam00271.
Length = 462
Score = 27.6 bits (62), Expect = 3.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 31 KKKKKKKKKKPPPG 44
KK +K +KKPP G
Sbjct: 20 KKLRKVVRKKPPEG 33
>gnl|CDD|218451 pfam05129, Elf1, Transcription elongation factor Elf1 like. This
family of short proteins contains a putative zinc
binding domain with four conserved cysteines. ELF1 has
been identified as a transcription elongation factor in
Saccharomyces cerevisiae.
Length = 74
Score = 25.7 bits (57), Expect = 3.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 29 SKKKKKKKKKKKPPPGRKDC 48
K+K KKKKK P DC
Sbjct: 1 KKRKPPKKKKKYKLPTVFDC 20
>gnl|CDD|237098 PRK12421, PRK12421, ATP phosphoribosyltransferase regulatory
subunit; Provisional.
Length = 392
Score = 27.2 bits (61), Expect = 3.8
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 15/101 (14%)
Query: 51 LYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRA---YVIPT---RVEPLHRPIP 104
L + L DLLQR +A PE+ +C++ + S Y + +E L R +
Sbjct: 178 LSPEEEEELFDLLQR--KALPEL--AEVCQNLGVGSDLRRMFYALARLNGGLEALDRALS 233
Query: 105 DLEQVRSRVKASLRTLRQ--DHKRNLNPTPYKVPIHVAVSD 143
L + ++ +L L+ H +N P ++P+ + +++
Sbjct: 234 VLALQDAAIRQALDELKTLAAHLKNRWP---ELPVSIDLAE 271
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 27.4 bits (61), Expect = 4.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 22 YNIFSSLSKKKKKKKKKKK 40
Y++ + KK KKKKKKK
Sbjct: 267 YDVSEMVKFKKPKKKKKKK 285
>gnl|CDD|218623 pfam05524, PEP-utilisers_N, PEP-utilising enzyme, N-terminal.
Length = 123
Score = 26.4 bits (59), Expect = 4.5
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 88 RAYVI-PTRVEPLHRPIPDLEQVRSRVKASLRTLRQD 123
A V+ E R + D+E +R++A+L R++
Sbjct: 14 PAVVLDEPEPEVPERSVEDVEAEIARLEAALEKAREE 50
>gnl|CDD|222466 pfam13945, NST1, Splicing factor, salt tolerance regulator. NST1
is a family of proteins that seem to be involved,
directly or indirectly, in the salt sensitivity of some
cellular functions in yeast. These proteins also
interact with the splicing factor Msl1p.
Length = 189
Score = 26.8 bits (59), Expect = 4.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 26 SSLSKKKKKKKKKKK 40
SS SK KKKKKK+ K
Sbjct: 28 SSSSKSKKKKKKRSK 42
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 26.7 bits (59), Expect = 5.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 23 NIFSSLSKKKKKKKKKKKPPP 43
NI SS KKK K+KK+KK
Sbjct: 216 NIMSSFFKKKTKEKKEKKEAS 236
>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II;
This family contains two enzymes that play an important
role in NAD production by either allowing quinolinic
acid (QA) , quinolinate phosphoribosyl transferase
(QAPRTase), or nicotinic acid (NA), nicotinate
phosphoribosyltransferase (NAPRTase), to be used in the
synthesis of NAD. QAPRTase catalyses the reaction of
quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide, an important step in
the de novo synthesis of NAD. NAPRTase catalyses a
similar reaction leading to NAMN and pyrophosphate,
using nicotinic acid an PPRP as substrates, used in the
NAD salvage pathway.
Length = 281
Score = 26.4 bits (59), Expect = 6.7
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 8 SGFDGTSNVLAGKMYNIFSS 27
G DG N L+ + +
Sbjct: 136 GGGDGHRNGLSDAILIKDNH 155
>gnl|CDD|133397 cd04769, HTH_MerR2, Helix-Turn-Helix DNA binding domain of
MerR2-like transcription regulators. Helix-turn-helix
(HTH) transcription regulator MerR2 and related
proteins. MerR2 in Bacillus cereus RC607 regulates
resistance to organomercurials. The MerR family
transcription regulators have been shown to mediate
responses to stress including exposure to heavy metals,
drugs, or oxygen radicals in eubacterial and some
archaeal species. They regulate transcription by
reconfiguring the spacer between the -35 and -10
promoter elements. A typical MerR regulator is comprised
of two distinct domains that harbor the regulatory
(effector-binding) site and the active (DNA-binding)
site. Their N-terminal domains are homologous and
contain a DNA-binding winged HTH motif, while the
C-terminal domains are often dissimilar and bind
specific coactivator molecules such as metal ions,
drugs, and organic substrates.
Length = 116
Score = 25.8 bits (57), Expect = 7.0
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 41 PPPGRKDCYRLYGGDGHALIDLLQRSTEAAP---------EVGSRVLCRHPFIESKRAYV 91
P P R YR+Y ++ L+ EA + + R
Sbjct: 27 PSPKRSGNYRVYDAQH---VECLRFIKEARQLGFTLAELKAIFAGHEGRAVLPWPHLQQA 83
Query: 92 IPTRVEPLHRPIPDLEQVRSRVKASLRTLRQD 123
+ + + + I +L+Q+ +R+ A +L+
Sbjct: 84 LEDKKQEIRAQITELQQLLARLDAFEASLKDA 115
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 26.5 bits (59), Expect = 7.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 30 KKKKKKKKKKKPPPGRKD 47
K+KKKKK+KKK +K
Sbjct: 394 KRKKKKKRKKKGKKRKKK 411
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 26.5 bits (59), Expect = 7.4
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 71 PEVGSRVLCRHPFIESKRAYVIPTR---------VEPLHRPIPDLEQVRSRVKASL 117
P+V L HP + + +P V P P LE +R+ V +L
Sbjct: 268 PQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVARTL 323
>gnl|CDD|241398 cd13244, PH_PLEKHG5_G6, Pleckstrin homology domain-containing
family G member 5 and 6 pleckstrin homology (PH) domain.
PLEKHG5 has a RhoGEF DH/double-homology domain in
tandem with a PH domain which is involved in
phospholipid binding. PLEKHG5 activates the nuclear
factor kappa B (NFKB1) signaling pathway. Mutations in
PLEKHG5 are associated with autosomal recessive distal
spinal muscular atrophy. PLEKHG6 (also called MyoGEF)
has no known function to date. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 154
Score = 25.7 bits (57), Expect = 9.3
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 29 SKKKKKKKKKKKPPPGRKDCYR 50
KKK+ +K + PP K
Sbjct: 81 VKKKEDRKVIRPPPLHDKIVVH 102
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 26.0 bits (57), Expect = 9.4
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 31 KKKKKKKKKKPP 42
KKKKK KKKK P
Sbjct: 92 KKKKKDKKKKSP 103
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.408
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,527,432
Number of extensions: 770722
Number of successful extensions: 1968
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1853
Number of HSP's successfully gapped: 83
Length of query: 163
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 74
Effective length of database: 6,990,096
Effective search space: 517267104
Effective search space used: 517267104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)