RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15543
(163 letters)
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
genomics, PSI; 2.00A {Enterococcus faecalis} SCOP:
c.1.17.1 d.41.2.1
Length = 494
Score = 119 bits (299), Expect = 2e-32
Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 14/134 (10%)
Query: 32 KKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRAYV 91
K +K PG+K +R+ P + HP YV
Sbjct: 349 KLSSNAEKVTTPGKKQVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINKYV 408
Query: 92 IPTRVEPLHRPI----------PDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHVAV 141
P+ + I P L++++ K +L +L +++KR+LNP Y V +
Sbjct: 409 RDFEARPVLQDIFVEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYP----VDL 464
Query: 142 SDHLYSFIHELWLQ 155
S ++ L +
Sbjct: 465 STDCWNHKMNLLEK 478
Score = 32.8 bits (75), Expect = 0.035
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 9 GFDGTSNVLAGKMYNI 24
G D TSNV AGK++ I
Sbjct: 182 GADATSNVRAGKIFGI 197
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M
structural genomics, PSI, protein structure initiative;
2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A*
1ytk_A
Length = 398
Score = 61.9 bits (151), Expect = 4e-12
Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 31/98 (31%)
Query: 34 KKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRAYVIP 93
K + K+ GRK+ R + P ++ +
Sbjct: 319 KPETKRGKMSGRKNVLRCTSCHRIEV---------------------VPANVQEKTCICG 357
Query: 94 TRVEPLHRPI----------PDLEQVRSRVKASLRTLR 121
++ L P +++RSR L +
Sbjct: 358 GSMQNLLVKYLSHGKRTSEYPRPKEIRSRSMKELEYFK 395
Score = 37.7 bits (88), Expect = 9e-04
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 9 GFDGTSNVLAGKMYNI 24
G DG S +L K+ +
Sbjct: 165 GADGVSGILGAKLIDQ 180
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding,
phosphoribosylpyrophosphate, Zn metal ION, structural
genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus}
SCOP: c.1.17.1 d.41.2.1
Length = 395
Score = 51.9 bits (125), Expect = 1e-08
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 31/93 (33%)
Query: 38 KKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRAYVIPTRVE 97
K+ GRK YR G H + + +R V +VE
Sbjct: 320 KRGKLSGRKQVYRCENGHYHVV---------------------PANKKLERCPVCNAKVE 358
Query: 98 PLHRPI----------PDLEQVRSRVKASLRTL 120
PL +PI P ++R V +
Sbjct: 359 PLLKPIIENGEIVVEFPKAREIREYVLEQAKKF 391
Score = 33.0 bits (76), Expect = 0.026
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 9 GFDGTSNVLAGKMYNI 24
G DG S VL +M
Sbjct: 161 GCDGVSGVLGAEMMGE 176
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE,
visfatin, beryllium fluoride, nicotinamide
D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo
sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A*
2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A
2g95_A 2g96_A* 2g97_A* 3g8e_A*
Length = 484
Score = 35.8 bits (82), Expect = 0.004
Identities = 12/108 (11%), Positives = 27/108 (25%), Gaps = 40/108 (37%)
Query: 19 GKMYNIFSSLSKKKKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVL 78
G N+F K K+ GR +R G+ ++ + E
Sbjct: 408 GLGINVF-----KDPVADPNKRSKKGRLSLHRTPAGN-FVTLEEGKGDLEEYG------- 454
Query: 79 CRHPFIESKRAYVIPTRVEPLHRPI---------PDLEQVRSRVKASL 117
+ L + +++R + ++
Sbjct: 455 ------------------QDLLHTVFKNGKVTKSYSFDEIRKNAQLNI 484
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural
genomics, protein structure initiative, hypothetical
protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa}
SCOP: c.1.17.2 d.41.2.2
Length = 408
Score = 35.0 bits (81), Expect = 0.007
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 8 SGFDGTSNVLAGKMYNI 24
F GTSNV + ++
Sbjct: 202 GCFVGTSNVHLARKLDL 218
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC,
PSI, protein structure initiative; 2.20A {Porphyromonas
gingivalis}
Length = 394
Score = 30.5 bits (69), Expect = 0.21
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 8 SGFDGTSNVLAGKMYNI 24
GTSNV + +
Sbjct: 189 ESLFGTSNVHLAHKHGL 205
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2
d.41.2.2
Length = 449
Score = 30.7 bits (69), Expect = 0.23
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 9 GFDGTSNVLAGKMYNI 24
F GTSNVL ++
Sbjct: 226 AFTGTSNVLLAMDSDL 241
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, center for structural genomics of infec
diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia
pestis}
Length = 407
Score = 30.4 bits (69), Expect = 0.26
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 9 GFDGTSNVLAGKMYNI 24
GTSN + +
Sbjct: 198 YLVGTSNYDLARTLAL 213
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, joint center for structural genomics; HET: MSE
MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2
d.41.2.2
Length = 441
Score = 30.1 bits (68), Expect = 0.35
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 6 GTSGFDGTSNVLAGKMYNI 24
S GTSN+L K Y +
Sbjct: 218 NKSLLLGTSNILFAKKYGV 236
>3rj1_C Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 223
Score = 29.1 bits (64), Expect = 0.61
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 89 AYVIPTRVEPLHRPIPDLEQVRSRV---KASLRTLRQDHKRNLNPTPYKVPIHVAV-SDH 144
+ + P L+ VR R+ SLR +R + + P Y + + V
Sbjct: 16 SLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELPQWYTLQSQLNVTLSQ 75
Query: 145 LYSFIHELWLQNAPIEEL 162
L S L ++
Sbjct: 76 LVSVTSTLQHFQETLDST 93
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2;
KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase,
structural genomics consortium; HET: SEP PTR IRB; 2.28A
{Homo sapiens} PDB: 3k2l_A*
Length = 429
Score = 28.9 bits (65), Expect = 0.65
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 28 LSKKKKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLC----RHPF 83
L+ + ++ K + PP R+ L G D +D L++ E P R+ RHP+
Sbjct: 354 LNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPA--VRMTPGQALRHPW 411
Query: 84 IESKRAYVIPTRVEPLHR 101
+ + + R
Sbjct: 412 LRRRLPKPPTGEKTSVKR 429
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.0
Identities = 22/163 (13%), Positives = 46/163 (28%), Gaps = 31/163 (19%)
Query: 10 FDGTSNVLA-GKMYNIFSSLSKKKKKKKKKKKPPPGRKDCYRLYGGDGHALI-DLLQRST 67
F+ + +L + + LS L + +L+ L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT------LTPDEVKSLLLKYLDCRP 315
Query: 68 EAAPEVGSRVLCRHPFI-----ESKRAYVIPTRVEPLHRPIPDLEQVRSRVKASLRTLRQ 122
+ P VL +P ES R + + +++ + +++SL L
Sbjct: 316 QDLPR---EVLTTNPRRLSIIAESIRDG--LATWDNWKHV--NCDKLTTIIESSLNVLEP 368
Query: 123 DHKRNLNPTPYKV----PIHVAVSDHLYSFIHELWLQNAPIEE 161
R + + P + L S +W +
Sbjct: 369 AEYRKM----FDRLSVFPPSAHIPTILLSL---IWFDVIKSDV 404
Score = 27.5 bits (60), Expect = 2.7
Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 29/144 (20%)
Query: 22 YNIFSSLSKKKKKKKKKKKPPPGRKDCYRLYGGDGHAL--IDLLQRSTEAAPEVGSRVLC 79
YNI K P D Y Y GH L I+ +R T V
Sbjct: 453 YNI--------PKTFDSDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTLF-----RMVFL 498
Query: 80 RHPFIESK----------RAYVIPT--RVEPLHRPIPDLEQVRSRVKASLRTLRQDHKRN 127
F+E K ++ T +++ I D + R+ ++ + N
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 128 LNPTPYKVPIHVAVSDHLYSFIHE 151
L + Y + +A+ I E
Sbjct: 559 LICSKYTDLLRIALMAE-DEAIFE 581
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 2.1
Identities = 20/140 (14%), Positives = 34/140 (24%), Gaps = 46/140 (32%)
Query: 51 LYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRAYVIPTRV--EPLHRPIPD--L 106
L G D HAL L + + ++ + Y+ + P +
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELI---------KNYITARIMAKRPFDKKSNSALF 146
Query: 107 EQVRSRVKASLRT--------------LRQDHKRNLNPTPYKVPIHVAVSDHLYS----- 147
V A L LR ++ + ++ L
Sbjct: 147 RAVGEG-NAQLVAIFGGQGNTDDYFEELRDLYQT---YHVLVGDLIKFSAETLSELIRTT 202
Query: 148 ------FIHEL----WLQNA 157
F L WL+N
Sbjct: 203 LDAEKVFTQGLNILEWLENP 222
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_B
Length = 255
Score = 26.6 bits (58), Expect = 3.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 28 LSKKKKKKKKKKKPPPGRKDCYRLY 52
LSK KK +KK+ P RK+ + +
Sbjct: 9 LSKGKKGQKKRVVDPFTRKEWFDIK 33
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding,
virulence gangrene determinant, C2 domain; 1.80A
{Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A
1qmd_A 1ca1_A 1gyg_A 1kho_A
Length = 370
Score = 26.8 bits (58), Expect = 3.7
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 13 TSNVL-AGKMYNIFSSLSKKKKKKKKKK--KPP----PGRKDCYRLYGGDGHALIDLLQR 65
TS AG ++ + K K ++ + P G KD Y D + ID +Q
Sbjct: 264 TSGEKDAGTDDYMYFGIKTKDGKTQEWEMDNPGNDFMTGSKDTYTFKLKDENLKIDDIQN 323
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural
genomics; NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 25.4 bits (55), Expect = 4.3
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 33 KKKKKKKKPPPGRKDCYRL 51
+KPPP +K L
Sbjct: 2 SSGSSGRKPPPKKKMTGTL 20
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 26.3 bits (58), Expect = 5.3
Identities = 22/115 (19%), Positives = 34/115 (29%), Gaps = 23/115 (20%)
Query: 23 NIFSSLSKKKKKKKKKKKPPPGRKDCYRLYG--GDGHALIDLLQRSTEAAPEVGSRVL-C 79
+ S+L+KK KK K+ P C +L D I A R L C
Sbjct: 27 ALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFDD----IKHTTLGERGALREAMRCLKC 82
Query: 80 RHPFIESKRAYVIPTRVEPLHRPIPD-LEQVRS-RVKASLRTLRQDHKRNLNPTP 132
+ P H I + + + + + + D NP
Sbjct: 83 ADAPCQKSC---------PTHLDIKSFITSISNKNYYGAAKMIFSD-----NPLG 123
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein
structure initiative; 2.20A {Burkholderia pseudomallei}
Length = 285
Score = 26.2 bits (58), Expect = 6.0
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 102 PIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIH 138
E V A+ HKR L T + P H
Sbjct: 253 DDAVAETVLRFYDATR------HKRALPYTMFDWPGH 283
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 26.0 bits (57), Expect = 7.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 29 SKKKKKKKKKKKPPPGRKD 47
+ KKKKKKKKK+ P + D
Sbjct: 96 TGKKKKKKKKKRGPKVQTD 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.408
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,513,226
Number of extensions: 139614
Number of successful extensions: 633
Number of sequences better than 10.0: 1
Number of HSP's gapped: 608
Number of HSP's successfully gapped: 44
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)