RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15543
(163 letters)
>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate
phosphoribosyltransferase EF2626 {Enterococcus faecalis
[TaxId: 1351]}
Length = 345
Score = 105 bits (262), Expect = 2e-28
Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 14/133 (10%)
Query: 30 KKKKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRA 89
K +K PG+K +R+ P + HP
Sbjct: 207 TIKLSSNAEKVTTPGKKQVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINK 266
Query: 90 YVIPTRVEPLHRPI----------PDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHV 139
YV P+ + I P L++++ K +L +L +++KR+LNP Y V
Sbjct: 267 YVRDFEARPVLQDIFVEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYP----V 322
Query: 140 AVSDHLYSFIHEL 152
+S ++ L
Sbjct: 323 DLSTDCWNHKMNL 335
Score = 32.2 bits (73), Expect = 0.021
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 9 GFDGTSNVLAGKMYNI 24
G D TSNV AGK++ I
Sbjct: 42 GADATSNVRAGKIFGI 57
>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase
Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Length = 270
Score = 52.3 bits (125), Expect = 3e-09
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 11/108 (10%)
Query: 14 SNVLAGKMYNIFSSLSKKKKKKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEV 73
+++ + K ++ + + K + K+ GRK+ R ++ +
Sbjct: 174 TSISSAKPFDFAMDIVEVNGKPETKRGKMSGRKNVLRCTSCHRIEVVPANVQEKTCICGG 233
Query: 74 GSRVLCRHPFIESKRAYVIPTRVEPLHRPIPDLEQVRSRVKASLRTLR 121
+ L KR P +++RSR L +
Sbjct: 234 SMQNLLVKYLSHGKRTS-----------EYPRPKEIRSRSMKELEYFK 270
Score = 32.6 bits (74), Expect = 0.012
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 9 GFDGTSNVLAGKMYNIFSS 27
G DG S +L K+ +
Sbjct: 40 GADGVSGILGAKLIDQDPV 58
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide
pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId:
2261]}
Length = 279
Score = 49.6 bits (118), Expect = 2e-08
Identities = 13/90 (14%), Positives = 22/90 (24%), Gaps = 11/90 (12%)
Query: 34 KKKKKKKPPPGRKDCYRLYGGDGHALIDLLQRSTEAAPEVGSRVLCRHPFIESKRAYVIP 93
K K+ GRK YR G H + + L + +
Sbjct: 200 KPIAKRGKLSGRKQVYRCENGHYHVVPANKKLERCPVCNAKVEPLLKPIIENGEIVV--- 256
Query: 94 TRVEPLHRPIPDLEQVRSRVKASLRTLRQD 123
P ++R V + +
Sbjct: 257 --------EFPKAREIREYVLEQAKKFNLE 278
Score = 30.7 bits (69), Expect = 0.055
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 9 GFDGTSNVLAGKMYNIFSS 27
G DG S VL +M +
Sbjct: 45 GCDGVSGVLGAEMMGEKAV 63
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate
phosphoribosyltransferase, C-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 266
Score = 35.0 bits (80), Expect = 0.002
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 8 SGFDGTSNVLAGKMYNI 24
S GTSN+L K Y +
Sbjct: 59 SLLLGTSNILFAKKYGV 75
>d1yira1 c.1.17.2 (A:145-399) Nicotinate
phosphoribosyltransferase, C-terminal domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 255
Score = 33.8 bits (77), Expect = 0.005
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 9 GFDGTSNVLAGKMYNI 24
F GTSNV + ++
Sbjct: 59 CFVGTSNVHLARKLDL 74
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate
phosphoribosyltransferase, C-terminal domain
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 266
Score = 33.8 bits (77), Expect = 0.006
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 9 GFDGTSNVLAGKMYNI 24
F GTSNVL ++
Sbjct: 59 AFTGTSNVLLAMDSDL 74
>d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 241
Score = 31.0 bits (70), Expect = 0.042
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 62 LLQRSTEAAPEVGSRVLCRHPFIESKRAYVIPTRVEPLHRPIPDLEQVRSRVKASLRTLR 121
++ + P + PF++ K+ +E + L+ + + + S+R L
Sbjct: 124 IVTEGVKIYPYGMGNLTLNEPFVKEKKE------LELSLAYLAKLDGILEKYRGSMRALS 177
Query: 122 QDHKRNLNPTPYKVPIHVAVS 142
QD L P K +H+
Sbjct: 178 QDKGDKLTP---KDVMHILSI 195
>d2pkgc1 g.92.1.1 (C:91-170) Small t antigen, ST-AG {Simian virus
40 [TaxId: 10633]}
Length = 80
Score = 28.7 bits (64), Expect = 0.092
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 24 IFSSLSKKKKKKKKKKKPPPGRKDCY 49
+ L K + +K +K P DCY
Sbjct: 24 LLCLLRMKHENRKLYRKDPLVWVDCY 49
>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus
thermophilus [TaxId: 274]}
Length = 131
Score = 26.7 bits (58), Expect = 0.80
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 88 RAYVI-----PTRVEPLHRPIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHVAVS 142
+A+V+ P + L P + +V RV+A R P +
Sbjct: 2 KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGM 61
Query: 143 DH 144
+
Sbjct: 62 EV 63
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.5 bits (56), Expect = 1.2
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 33 KKKKKKKKPPPGRKDCYRL 51
+KPPP +K L
Sbjct: 2 SSGSSGRKPPPKKKMTGTL 20
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
subunit I {Thermus thermophilus [TaxId: 274]}
Length = 549
Score = 26.5 bits (58), Expect = 1.7
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 21 MYNIFSSLSKKKKKKKKKKKPPP 43
+Y +FS L +++K + + P P
Sbjct: 472 IYGLFSVLLSRERKPELAEAPLP 494
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 26.4 bits (57), Expect = 1.9
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 28 LSKKKKKKKKKKKPPPGRKDCYRLYGGDGHAL 59
++ KK + +K + YR+ G+ L
Sbjct: 6 FKRRIKKANEYRKKVLKYTNVYRMVYGEADYL 37
>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis
mellifera) [TaxId: 7460]}
Length = 321
Score = 26.0 bits (57), Expect = 2.3
Identities = 12/52 (23%), Positives = 16/52 (30%)
Query: 96 VEPLHRPIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIHVAVSDHLYS 147
+ + V RVK +LR RQ PY + D S
Sbjct: 219 LRWNLTSGERVGLVGGRVKEALRIARQMTTSRKKVLPYYWYKYQDRRDTDLS 270
>d2choa1 a.246.1.1 (A:437-590) Glucosaminidase GH84 post-catalytic
domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 154
Score = 25.6 bits (56), Expect = 2.3
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 64 QRSTEAAPEVGSRVLCRHPFIESKRAYV 91
Q + + +RV+ P I+ A V
Sbjct: 111 QNPYQPGVKTATRVI--KPLIDRTFATV 136
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 26.1 bits (56), Expect = 2.4
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 76 RVLCRHPFIESKRAYVIPTRVEPLHRPIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKV 135
RVL P + VI + + + R S L R+ +K
Sbjct: 419 RVLGTAPGVT--EVVVIGLADQRWGQSVTACVVPRLGETLSADALDT-FCRSSELADFKR 475
Query: 136 PIHVAVSDHL 145
P + D L
Sbjct: 476 PKRYFILDQL 485
>d1ksqa_ g.23.1.1 (A:) Transforming growth factor-beta binding
protein-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 24.5 bits (53), Expect = 3.1
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 40 KPPPGRKDCYRLYGGDGHALIDLLQRSTEA 69
+P +K+CY L T+
Sbjct: 4 QPKEEKKECYYNLNDASLCDNVLAPNVTKQ 33
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 24.9 bits (54), Expect = 3.4
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 26 SSLSKKKKKKKKKKKPPPGRKDCYRLYGGDGHALI 60
SS S + K K +P + Y LY + A +
Sbjct: 2 SSGSSGQLKDKFDGRPTKPPPNSYSLYCAELMANM 36
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 291
Score = 25.0 bits (54), Expect = 4.4
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 1 MMLPLGTSGFDGTSNVLAGKMYNIFSSLSKKKKKKKKKKKPPPGRKDCYRLYGGDGHALI 60
M+ P+ + F + + G ++ SL KKK + G + + D + +
Sbjct: 29 MIAPVKATSF--SEALRMG--SEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPL 84
Query: 61 DLLQRSTEAA 70
+L + E A
Sbjct: 85 PILMEAIEEA 94
>d1t4aa_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Bacillus
subtilis [TaxId: 1423]}
Length = 80
Score = 23.8 bits (52), Expect = 4.8
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 5 LGTSGFDGTSNVLAGKMYNIFSSLSKKKKKKKKKK 39
L + ++ +V GK + S + K+
Sbjct: 26 LHSMTYNEVQDVRIGKYMELTIEKSDRDLDVLVKE 60
>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod
(Gadus callarias) [TaxId: 8053]}
Length = 199
Score = 24.5 bits (52), Expect = 6.2
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 88 RAYVI-----PTRVEPLHRPIPDLEQVRSRVKASLRTLRQDHKRNLNPTPYKVPIH 138
+A V P +E + +P ++R ++ A+ + P+
Sbjct: 10 KAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVV 65
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280,
middle and C-terminal domains {Thermus thermophilus
[TaxId: 274]}
Length = 318
Score = 24.4 bits (52), Expect = 8.5
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 24 IFSSLSKKKKKKKKKKKPPPGRKDCYRLYGGDGHAL 59
+ +L++ +++ + P + YRL +G L
Sbjct: 8 LLENLAQALARREAVLRQDP--EGGYRLVHAEGDLL 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.408
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 619,870
Number of extensions: 28172
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 40
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)