BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15544
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative
Nicotinate Phosphoribosyltransferase, New York
Structural Genomics Consortium
Length = 494
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 34 TDIDYLKETLPPCVEEEFYEFLRSVTAD---QVTLYAIQEGSVVFPRVPLLRVEGPLIIV 90
+DI YL+E EE+ E + A+ + T+ + EG +VF PL+++EGPL
Sbjct: 71 SDIAYLREV------EEYPEDFLTYLANFEFKCTVRSALEGDLVFNNEPLIQIEGPLAQC 124
Query: 91 QXXXXXXXXXVNFAS 105
Q VNF +
Sbjct: 125 QLVETALLNMVNFQT 139
>pdb|1YTD|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum,
Native Structure
pdb|1YTE|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum,
Phosphoribosylpyrophosphate Bound Structure
pdb|1YTK|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum
With Nicotinate Mononucleotide
pdb|2I1O|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum
Length = 398
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 53 EFLRSVTADQVTLYAIQEGSVVFPR------VPLLRVEG 85
E L+ + V LYAI EG+++FPR VP +RVEG
Sbjct: 65 EVLKLLEGLDVDLYAIPEGTILFPRDANGLPVPFIRVEG 103
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 20 PGLSAFRIHSRLLFTDIDYLKETLPPCVEEE 50
PG AF +H FT +++L++ LPP V+ E
Sbjct: 2 PGSMAFLLHQARFFTTVNHLRD-LPPTVQPE 31
>pdb|2I14|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|C Chain C, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|D Chain D, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|E Chain E, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|F Chain F, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
Length = 395
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 49 EEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEG 85
EE + L + V +YA+ EG++ P P+L++EG
Sbjct: 66 EEVAKLLEGIP---VNVYAMPEGTIFHPYEPVLQIEG 99
>pdb|2P7J|A Chain A, Crystal Structure Of The Domain Of Putative Sensory
Box/ggdef Family Protein From Vibrio Parahaemolyticus
pdb|2P7J|B Chain B, Crystal Structure Of The Domain Of Putative Sensory
Box/ggdef Family Protein From Vibrio Parahaemolyticus
Length = 287
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Query: 50 EFYEFLRSVTADQVTLYAIQ----EGSVVFPRVPLLRVEGPLII 89
E++++ +S+ +Q++ + I+ +G +V+P P LR+ P+ +
Sbjct: 117 EYFKYAQSLDNEQISAWGIELERDKGELVYPLSPSLRILXPISV 160
>pdb|4EZE|A Chain A, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
pdb|4EZE|B Chain B, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
Length = 317
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 38 YLKETLPP-CVEEEFYEFLRSVT 59
YLK TLP C+ EFY +LR ++
Sbjct: 69 YLKLTLPAECLTPEFYRYLRELS 91
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 9 PIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPP------CVEEEFYEFLRSVTADQ 62
P+RS C L + L + + + TL C+ E F +TAD
Sbjct: 301 PMRSECCCSLARHLMTL-VMDPLQTASVQWFERTLDDSANRRICLAEAF------LTADT 353
Query: 63 V--TLYAIQEGSVVFPRVPLLRVEGPL 87
+ TL I EG VV+P+V R+ L
Sbjct: 354 ILNTLQNISEGLVVYPKVIERRIRQEL 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,954,201
Number of Sequences: 62578
Number of extensions: 92190
Number of successful extensions: 344
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 7
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)