BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15544
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55G10|PNCB_DICDI Nicotinate phosphoribosyltransferase OS=Dictyostelium discoideum
GN=naprt PE=2 SV=1
Length = 589
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Query: 35 DIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLE 94
++ ++KE +P C E+EF ++L + + VTLYA++EGSVVFPRVPLLRVEGP+I+ QL E
Sbjct: 123 EVGFIKEMIPDC-EQEFLDYLSKLDSSSVTLYAMKEGSVVFPRVPLLRVEGPMILCQLFE 181
Query: 95 TTLLTLVNFAS 105
TTLL LVNFAS
Sbjct: 182 TTLLCLVNFAS 192
>sp|Q9VQX4|PNCB_DROME Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster
GN=CG3714 PE=2 SV=2
Length = 555
Score = 92.0 bits (227), Expect = 8e-19, Method: Composition-based stats.
Identities = 50/72 (69%), Positives = 64/72 (88%)
Query: 34 TDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLL 93
+DI+YLK+TLP +E EF+E+L ++TA VTLYAI EG+V FPRVP++++EGPLIIVQLL
Sbjct: 87 SDIEYLKQTLPEGIEHEFFEYLGNLTARDVTLYAIDEGTVAFPRVPIIKIEGPLIIVQLL 146
Query: 94 ETTLLTLVNFAS 105
ETTLLTLVN+AS
Sbjct: 147 ETTLLTLVNYAS 158
>sp|Q95XX1|PNCB_CAEEL Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans
GN=Y54G2A.17 PE=2 SV=3
Length = 562
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 55/72 (76%)
Query: 34 TDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLL 93
+DIDY+K+ LP E EFYE+L ++ +T+ A+ EGSVVFP+VPLL + GPL + QL+
Sbjct: 90 SDIDYVKKILPENAEPEFYEYLETLNGSHLTIEAVAEGSVVFPKVPLLTINGPLAMCQLI 149
Query: 94 ETTLLTLVNFAS 105
ET++L LVN+AS
Sbjct: 150 ETSILNLVNYAS 161
>sp|Q6XQN6|PNCB_HUMAN Nicotinate phosphoribosyltransferase OS=Homo sapiens GN=NAPRT1 PE=1
SV=2
Length = 538
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 9/104 (8%)
Query: 2 SSYVLSPPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTAD 61
++ L+ +R CV + L AFR+ D+ +L LPP + F+E LR++
Sbjct: 52 GAFALAAGLRD-CVRF----LRAFRLRD----ADVQFLASVLPPDTDPAFFEHLRALDCS 102
Query: 62 QVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFAS 105
+VT+ A+ EGS+ FP VPLL+V GPL++VQLLET LL LV++AS
Sbjct: 103 EVTVRALPEGSLAFPGVPLLQVSGPLLVVQLLETPLLCLVSYAS 146
>sp|A5PK51|PNCB_BOVIN Nicotinate phosphoribosyltransferase OS=Bos taurus GN=NAPRT1 PE=2
SV=2
Length = 538
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 9/104 (8%)
Query: 2 SSYVLSPPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTAD 61
++ L+ +R CV + L AFR+ D+ +L LPP + F+E LR++
Sbjct: 52 GAFALAAGLRD-CVRF----LRAFRLRD----ADVQFLASALPPDTDPAFFEHLRALDCS 102
Query: 62 QVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFAS 105
VT+ A+ EGS+ FP VPLL+V GPL++VQLLET LL LV++AS
Sbjct: 103 GVTVRALPEGSLAFPGVPLLQVSGPLLVVQLLETPLLCLVSYAS 146
>sp|Q8CC86|PNCB_MOUSE Nicotinate phosphoribosyltransferase OS=Mus musculus GN=Naprt1 PE=2
SV=1
Length = 538
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 22 LSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLL 81
L AFR+ D+ +L LPP + F+E LR++ VT+ A+ EGS+ FP VPLL
Sbjct: 67 LRAFRLRD----ADVQFLASVLPPDTDPAFFEHLRALDCSGVTVRALPEGSLAFPGVPLL 122
Query: 82 RVEGPLIIVQLLETTLLTLVNFAS 105
+V GPL++VQLLET LL LV++AS
Sbjct: 123 QVSGPLLLVQLLETPLLCLVSYAS 146
>sp|Q6XQN1|PNCB_RAT Nicotinate phosphoribosyltransferase OS=Rattus norvegicus GN=Naprt1
PE=2 SV=1
Length = 538
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 4/84 (4%)
Query: 22 LSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLL 81
L AFR+ D+ +L LPP + F+E LR++ +V++ A+ EGS+ FP VPLL
Sbjct: 67 LRAFRLRD----ADVQFLASVLPPDTDPAFFEHLRALDCSRVSVRALPEGSLAFPGVPLL 122
Query: 82 RVEGPLIIVQLLETTLLTLVNFAS 105
+V GPL++VQLLET LL LV++AS
Sbjct: 123 QVSGPLLLVQLLETPLLCLVSYAS 146
>sp|Q6P3H4|PNCB_DANRE Nicotinate phosphoribosyltransferase OS=Danio rerio GN=naprt1 PE=2
SV=2
Length = 546
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 50/71 (70%)
Query: 35 DIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLE 94
D+ YL+ LP + F+ +L+ + V++ A+ EGSVVF RVPLL V GPL +VQLLE
Sbjct: 75 DVQYLRSVLPADTDAGFFSYLKELDCSCVSVSAVPEGSVVFARVPLLEVSGPLAVVQLLE 134
Query: 95 TTLLTLVNFAS 105
T+LL LVN+AS
Sbjct: 135 TSLLCLVNYAS 145
>sp|O32090|PNCB_BACSU Nicotinate phosphoribosyltransferase OS=Bacillus subtilis (strain
168) GN=pncB PE=3 SV=1
Length = 490
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 34 TDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLL 93
+D+ YL++ L E+F E+LR ++ +LY+++EG +VF P++RVE PL+ QL+
Sbjct: 72 SDLSYLQDELG--YHEDFIEYLRGLSFTG-SLYSMKEGELVFNNEPIMRVEAPLVEAQLI 128
Query: 94 ETTLLTLVNFAS 105
ET LL +VN+ +
Sbjct: 129 ETALLNIVNYQT 140
>sp|Q9HJ28|PNCB_THEAC Putative nicotinate phosphoribosyltransferase OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=Ta1145 PE=1 SV=1
Length = 392
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 53 EFLRSVTADQVTLYAIQEGSVVFPR------VPLLRVEGPLIIVQLLETTLLTLVNFAS 105
E L+ + V LYAI EG+++FPR VP +RVEG + ET +L + AS
Sbjct: 59 EVLKLLEGLDVDLYAIPEGTILFPRDANGLPVPFIRVEGRYCDFGMYETAILGFICQAS 117
>sp|O53770|PNCB2_MYCTU Nicotinate phosphoribosyltransferase pncB2 OS=Mycobacterium
tuberculosis GN=pncB2 PE=2 SV=1
Length = 463
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 53 EFLRSVTADQVT--LYAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFAS 105
EFLR + + T ++A EG+V+FP P +++ P+I QL+ET +L ++ S
Sbjct: 82 EFLRWLAGVRFTGDVWAAPEGTVIFPNEPAVQLIAPIIEAQLVETFVLNQIHLQS 136
>sp|P52517|V55A_HHV7J Uncharacterized protein U55A OS=Human herpesvirus 7 (strain JI)
GN=U55A PE=4 SV=1
Length = 427
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 21 GLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVV 74
L F I S LL D Y KE + P +F + + + LY+++ G ++
Sbjct: 89 ALPIFNITSSLLIQDNCYFKENMDPLRFHQFAYLEKGLGTTPIILYSVKNGDLI 142
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,023,023
Number of Sequences: 539616
Number of extensions: 1377411
Number of successful extensions: 4161
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4147
Number of HSP's gapped (non-prelim): 16
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)