Query psy15544
Match_columns 125
No_of_seqs 108 out of 1071
Neff 5.7
Searched_HMMs 46136
Date Sat Aug 17 00:01:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12484 nicotinate phosphorib 100.0 1.9E-33 4.1E-38 239.0 13.7 110 7-119 37-146 (443)
2 TIGR01513 NAPRTase_put putativ 100.0 3.1E-33 6.8E-38 237.6 13.4 110 7-119 34-143 (443)
3 PLN02885 nicotinate phosphorib 100.0 6.5E-33 1.4E-37 240.4 13.4 113 7-119 45-157 (545)
4 cd01570 NAPRTase_A Nicotinate 100.0 1.9E-31 4E-36 219.0 13.7 110 7-119 34-143 (327)
5 PRK09243 nicotinate phosphorib 100.0 2.8E-31 6E-36 226.7 13.4 109 8-119 44-152 (464)
6 cd01401 PncB_like Nicotinate p 100.0 3.1E-29 6.7E-34 209.7 12.3 100 10-119 39-157 (377)
7 COG1488 PncB Nicotinic acid ph 100.0 8.5E-29 1.8E-33 208.6 12.1 108 7-119 47-154 (405)
8 TIGR01514 NAPRTase nicotinate 100.0 2.5E-28 5.5E-33 205.1 12.4 103 10-119 39-159 (394)
9 PHA02594 nadV nicotinamide pho 100.0 4.6E-28 1E-32 207.1 11.5 117 2-119 33-161 (470)
10 PRK05321 nicotinate phosphorib 99.9 1.5E-27 3.2E-32 200.9 12.4 95 16-117 52-161 (400)
11 PRK09198 putative nicotinate p 99.9 2.1E-27 4.5E-32 202.9 11.3 116 2-119 30-158 (463)
12 cd01569 PBEF_like pre-B-cell c 99.9 1.6E-25 3.4E-30 188.8 11.4 118 1-119 22-156 (407)
13 KOG2511|consensus 99.9 9E-26 1.9E-30 186.5 5.7 112 8-120 42-153 (420)
14 cd01567 NAPRTase_PncB Nicotina 99.9 1.8E-23 4E-28 171.6 12.9 108 10-120 36-143 (343)
15 PRK07188 nicotinate phosphorib 99.6 6E-16 1.3E-20 128.8 8.1 81 12-119 48-128 (352)
16 PRK08662 nicotinate phosphorib 99.5 2.6E-13 5.6E-18 112.6 9.1 79 9-119 48-126 (343)
17 cd00516 PRTase_typeII Phosphor 99.5 2.6E-13 5.6E-18 108.1 8.6 80 13-120 29-108 (281)
18 cd01571 NAPRTase_B Nicotinate 99.4 4E-12 8.7E-17 103.8 9.4 76 13-120 35-110 (302)
19 cd01573 modD_like ModD; Quinol 99.1 5.3E-10 1.1E-14 90.2 8.3 57 63-119 56-113 (272)
20 cd01568 QPRTase_NadC Quinolina 99.0 1.3E-09 2.7E-14 87.7 8.5 58 63-120 57-115 (269)
21 TIGR00078 nadC nicotinate-nucl 98.9 1.2E-08 2.5E-13 82.2 8.6 78 11-120 34-112 (265)
22 cd01572 QPRTase Quinolinate ph 98.8 4E-08 8.7E-13 79.2 8.4 58 63-120 58-116 (268)
23 PRK05848 nicotinate-nucleotide 98.6 1.4E-07 3.1E-12 76.5 8.5 56 65-120 61-116 (273)
24 PRK08385 nicotinate-nucleotide 98.6 2E-07 4.4E-12 75.8 8.5 57 63-119 58-115 (278)
25 PRK05742 nicotinate-nucleotide 98.6 2.6E-07 5.5E-12 75.1 8.4 54 66-119 70-123 (277)
26 PRK07896 nicotinate-nucleotide 98.3 2.4E-06 5.2E-11 69.9 7.1 55 64-118 77-132 (289)
27 PRK07428 nicotinate-nucleotide 98.3 4.8E-06 1E-10 68.1 8.3 53 66-118 76-128 (288)
28 PRK09016 quinolinate phosphori 98.1 2.7E-05 5.9E-10 64.0 8.8 54 66-119 89-142 (296)
29 PRK08072 nicotinate-nucleotide 98.0 3.7E-05 7.9E-10 62.5 9.0 56 64-119 65-121 (277)
30 PRK06559 nicotinate-nucleotide 98.0 3.5E-05 7.7E-10 63.2 8.4 52 68-119 79-130 (290)
31 PRK06106 nicotinate-nucleotide 98.0 5.1E-05 1.1E-09 61.9 8.7 54 66-119 74-127 (281)
32 PLN02716 nicotinate-nucleotide 97.8 6.9E-05 1.5E-09 62.0 7.2 54 66-119 82-135 (308)
33 PRK06543 nicotinate-nucleotide 97.6 0.00046 9.9E-09 56.4 8.7 54 66-119 69-122 (281)
34 TIGR01334 modD putative molybd 97.5 0.00045 9.7E-09 56.3 7.1 53 67-119 65-117 (277)
35 PRK06978 nicotinate-nucleotide 97.4 0.00089 1.9E-08 55.1 8.6 53 66-118 86-138 (294)
36 PRK06096 molybdenum transport 97.4 0.0005 1.1E-08 56.3 7.1 53 67-119 66-118 (284)
37 COG0157 NadC Nicotinate-nucleo 97.0 0.0041 8.8E-08 51.0 8.2 54 66-119 68-121 (280)
38 PF02749 QRPTase_N: Quinolinat 96.9 0.004 8.6E-08 42.1 6.4 43 63-105 45-88 (88)
39 KOG3008|consensus 95.0 0.037 8.1E-07 44.8 4.4 54 66-119 75-128 (300)
40 PHA00650 hypothetical protein 71.4 5.8 0.00013 26.2 3.1 23 32-57 8-30 (82)
41 PF14568 SUKH_6: SMI1-KNR4 cel 49.2 15 0.00032 24.5 2.1 27 33-59 1-27 (120)
42 smart00860 SMI1_KNR4 SMI1 / KN 48.0 26 0.00057 22.3 3.1 28 31-58 2-29 (129)
43 PF09926 DUF2158: Uncharacteri 44.2 7.8 0.00017 24.2 0.1 19 60-84 1-19 (53)
44 COG1423 ATP-dependent DNA liga 44.0 14 0.00031 31.6 1.7 56 27-85 12-67 (382)
45 PF13533 Biotin_lipoyl_2: Biot 43.2 37 0.00081 20.2 3.0 29 63-91 11-41 (50)
46 cd07350 NR_LBD_Dax1 The ligand 42.8 20 0.00044 28.2 2.2 27 17-43 127-153 (232)
47 cd06951 NR_LBD_Dax1_like The l 42.5 27 0.00058 27.2 2.9 28 16-43 117-144 (222)
48 PF09346 SMI1_KNR4: SMI1 / KNR 41.4 24 0.00053 23.2 2.2 27 31-57 2-28 (130)
49 PRK05321 nicotinate phosphorib 41.4 47 0.001 28.6 4.4 83 33-121 56-156 (400)
50 PF08225 Antimicrobial19: Pseu 40.6 27 0.00058 18.1 1.7 14 15-28 8-21 (23)
51 cd06157 NR_LBD The ligand bind 37.7 29 0.00063 24.0 2.2 27 17-43 86-112 (168)
52 TIGR01514 NAPRTase nicotinate 37.6 51 0.0011 28.4 4.0 28 33-63 49-78 (394)
53 smart00430 HOLI Ligand binding 35.6 41 0.00089 23.0 2.7 27 17-43 80-106 (163)
54 PF07801 DUF1647: Protein of u 35.5 42 0.00091 25.0 2.8 35 28-62 96-138 (142)
55 cd07349 NR_LBD_SHP The ligand 35.3 30 0.00066 27.0 2.2 26 18-43 116-141 (222)
56 cd06930 NR_LBD_F2 Ligand-bindi 35.2 45 0.00097 23.6 2.9 32 16-49 84-115 (165)
57 cd06954 NR_LBD_LXR The ligand 34.7 46 0.001 25.7 3.1 28 16-43 127-154 (236)
58 PHA02119 hypothetical protein 34.0 56 0.0012 22.0 3.0 34 44-85 52-85 (87)
59 cd06948 NR_LBD_COUP-TF Ligand 33.7 41 0.00089 26.2 2.7 30 19-50 118-147 (236)
60 PF06878 Pkip-1: Pkip-1 protei 32.5 38 0.00082 25.9 2.2 40 15-66 44-83 (163)
61 cd06940 NR_LBD_REV_ERB The lig 32.5 45 0.00097 25.1 2.6 29 15-43 94-122 (189)
62 cd06942 NR_LBD_Sex_1_like The 32.4 41 0.0009 25.1 2.4 27 17-43 85-111 (191)
63 PF00874 PRD: PRD domain; Int 32.4 73 0.0016 19.5 3.3 29 13-41 56-84 (89)
64 cd07069 NR_LBD_Lrh-1 The ligan 32.2 46 0.00099 26.2 2.7 31 17-49 129-159 (241)
65 cd06950 NR_LBD_Tlx_PNR_like Th 31.8 40 0.00086 25.7 2.3 27 17-43 110-136 (206)
66 cd06941 NR_LBD_DmE78_like The 31.1 60 0.0013 24.2 3.1 29 15-43 84-112 (195)
67 PF14567 SUKH_5: SMI1-KNR4 cel 29.0 34 0.00074 25.1 1.4 28 31-58 22-49 (132)
68 cd06929 NR_LBD_F1 Ligand-bindi 29.0 51 0.0011 23.7 2.4 29 15-43 84-112 (174)
69 KOG4718|consensus 29.0 26 0.00057 28.1 0.9 38 6-43 68-105 (235)
70 cd06953 NR_LBD_DHR4_like The l 28.7 52 0.0011 25.2 2.5 28 16-43 114-141 (213)
71 cd06936 NR_LBD_Fxr The ligand 27.4 63 0.0014 25.0 2.8 27 17-43 117-143 (221)
72 PF06888 Put_Phosphatase: Puta 27.1 1.6E+02 0.0035 23.4 5.0 51 19-72 46-99 (234)
73 PF14702 hGDE_central: central 27.1 32 0.0007 27.8 1.1 25 9-33 211-235 (260)
74 cd07068 NR_LBD_ER_like The lig 27.1 62 0.0013 24.8 2.6 27 17-43 111-137 (221)
75 cd06944 NR_LBD_Ftz-F1_like The 26.2 67 0.0015 25.0 2.7 28 16-43 126-153 (237)
76 TIGR00135 gatC glutamyl-tRNA(G 25.9 89 0.0019 20.8 3.0 21 22-42 8-28 (93)
77 cd06952 NR_LBD_TR2_like The li 25.2 56 0.0012 24.9 2.1 29 19-49 115-143 (222)
78 cd06946 NR_LBD_ERR The ligand 25.0 72 0.0016 24.4 2.7 27 17-43 111-137 (221)
79 cd07070 NR_LBD_SF-1 The ligand 24.0 67 0.0015 25.1 2.4 28 20-49 130-157 (237)
80 PF14894 Lsm_C: Lsm C-terminal 23.8 74 0.0016 20.7 2.1 42 49-90 2-50 (64)
81 cd06931 NR_LBD_HNF4_like The l 23.6 84 0.0018 23.9 2.8 25 19-43 118-142 (222)
82 cd06943 NR_LBD_RXR_like The li 23.6 73 0.0016 23.9 2.4 25 19-43 117-141 (207)
83 PF05903 Peptidase_C97: PPPDE 23.4 16 0.00034 26.9 -1.3 42 16-59 84-125 (151)
84 cd06935 NR_LBD_TR The ligand b 23.0 83 0.0018 24.7 2.7 28 16-43 135-162 (243)
85 cd06949 NR_LBD_ER Ligand bindi 22.8 80 0.0017 24.6 2.6 27 17-43 117-143 (235)
86 PF08004 DUF1699: Protein of u 22.6 2E+02 0.0043 21.3 4.4 41 14-56 88-129 (131)
87 PF07553 Lipoprotein_Ltp: Host 22.0 1.1E+02 0.0025 18.5 2.6 10 30-39 35-44 (48)
88 PF08621 RPAP1_N: RPAP1-like, 21.5 76 0.0016 19.4 1.7 28 31-58 15-42 (49)
89 PF04023 FeoA: FeoA domain; I 21.2 1.3E+02 0.0029 18.5 3.0 21 48-68 21-42 (74)
No 1
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.9e-33 Score=238.96 Aligned_cols=110 Identities=30% Similarity=0.401 Sum_probs=106.3
Q ss_pred cCCCCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEec
Q psy15544 7 SPPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGP 86 (125)
Q Consensus 7 ~p~~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp 86 (125)
.|.+++|.|++||+++|++|++++||+||++||++.+ +|+++|++||++|+|+ ++|+|+|||+++||++|+|+|+||
T Consensus 37 ~p~~~~~~v~aGl~~~l~~L~~~~ft~eei~yl~~~~--~f~~~f~~~L~~~~~~-~~I~A~~EG~~v~~~ep~l~Iegp 113 (443)
T PRK12484 37 LPDGRGFLIAAGLADVVEFLEAFRFDEQDLRYLRGLN--QFSEEFLAWLAGLRFT-GDVRAVPEGTVVFPNEPLLEVTAP 113 (443)
T ss_pred CCCCCceehHHHHHHHHHHHhcCCCCHHHHHHHHHcC--CCCHHHHHHHHhCCCC-ceEEEEeCCeeecCCcEEEEEEEc
Confidence 4778999999999999999999999999999999984 8999999999999999 699999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 87 LIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 87 ~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
|.++++|||+||++||++|+|||||+||+.+|+
T Consensus 114 ~~e~~llET~lL~il~~~s~iATka~ri~~aa~ 146 (443)
T PRK12484 114 LIEAQLVETFLLNQINHQSLIASKAARCVLAAA 146 (443)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999986
No 2
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=100.00 E-value=3.1e-33 Score=237.60 Aligned_cols=110 Identities=35% Similarity=0.508 Sum_probs=106.6
Q ss_pred cCCCCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEec
Q psy15544 7 SPPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGP 86 (125)
Q Consensus 7 ~p~~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp 86 (125)
.|.+++|.|++||+++|++|++++||+||++||++.+ +|+++|++||++|+|+ ++|+|+|||+++||++|+|+|+||
T Consensus 34 ~p~~~~~~v~~GL~~~l~~L~~~~ft~eei~yl~~~~--~f~~~f~~~L~~~~~~-~~I~A~~EG~~v~~~ep~l~Iegp 110 (443)
T TIGR01513 34 LPFGRGYAVFAGLEDLLEFLENFRFDAEDIEYLASLG--IFDDAFLDYLREFRFS-GTVRALPEGSLVFPNEPLLQVEGP 110 (443)
T ss_pred CCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHhCC--CCCHHHHHHHHhCCCC-cEEEEecCCccccCCcEEEEEEEc
Confidence 4678999999999999999999999999999999985 7999999999999999 999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 87 LIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 87 ~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
|.++++|||+||++|||+|+|||||+||+.+|+
T Consensus 111 ~~~~~llEt~lL~~i~~~s~iATka~r~~~aa~ 143 (443)
T TIGR01513 111 LIEAQLLETLVLNIINFQTLIATKAARIVLAAG 143 (443)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999985
No 3
>PLN02885 nicotinate phosphoribosyltransferase
Probab=100.00 E-value=6.5e-33 Score=240.38 Aligned_cols=113 Identities=41% Similarity=0.659 Sum_probs=108.3
Q ss_pred cCCCCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEec
Q psy15544 7 SPPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGP 86 (125)
Q Consensus 7 ~p~~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp 86 (125)
.|++++|.|++||+++|++|++++||+||++||++.++.+|+++|++||++|+|++.+|+++|||+++||+||+|+|+||
T Consensus 45 ~p~~~~~~v~aGL~~~l~~L~~l~Ft~edi~yL~~~~~~~f~~~Fl~yL~~~~~~~V~I~A~~EG~lvf~~eP~i~IeGp 124 (545)
T PLN02885 45 NPFGGEYTVFAGLEECLRFIANFKFTDDDIDFLRSVMPSGCEDAFFDYLRGLDCSDVEVYAIPEGSVVFPRVPLMRIEGP 124 (545)
T ss_pred CCCCCcccHHHHHHHHHHHHhhCCCCHHHHHHHHhhccccCCHHHHHHHHhCCCCCceEEecCCCcEecCCCceEEEEeC
Confidence 47789999999999999999999999999999999864379999999999999997899999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 87 LIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 87 ~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
|++++||||+||++||++|+|||+|+|++.||+
T Consensus 125 ~~~~~LlEt~LL~iI~~~s~iAT~aar~~~aa~ 157 (545)
T PLN02885 125 LAVVQLLETTFLTLVNYASLVATNAARHRLVAG 157 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999996
No 4
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=99.97 E-value=1.9e-31 Score=219.02 Aligned_cols=110 Identities=39% Similarity=0.546 Sum_probs=105.6
Q ss_pred cCCCCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEec
Q psy15544 7 SPPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGP 86 (125)
Q Consensus 7 ~p~~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp 86 (125)
.|.+++|.|++||+++|++|++++||+||++||++.+ +|+++|++||++|||+ ++|+++|||+++++++|+|+|+||
T Consensus 34 ~p~~~~~~v~~gl~~~l~~L~~l~~t~~ei~~l~~~~--~~~~~~~~~L~~~~~~-v~i~a~~EG~~v~~~~pvl~IeGp 110 (327)
T cd01570 34 LPFGGGYAVFAGLEELLEYLENFRFTEEDIDYLRSLG--IFDEEFLDYLRGFRFT-GTIYAIPEGEVVFPNEPLLTVEGP 110 (327)
T ss_pred CCCCCcccHHHHHHHHHHHHhcCCCCHHHHHHHHhCC--CCCHHHHHHHHhCCCC-ceEEEecCCceecCCcEEEEEEEc
Confidence 4667899999999999999999999999999999985 7999999999999998 999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 87 LIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 87 ~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
|.++++|||++|++||++|+|||||++++++++
T Consensus 111 ~~~~~l~Et~lL~il~~~s~iATka~~~~~~~~ 143 (327)
T cd01570 111 LIEAQLLETLLLNLINFQTLIATKAARVRLAAG 143 (327)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999874
No 5
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=99.97 E-value=2.8e-31 Score=226.70 Aligned_cols=109 Identities=34% Similarity=0.512 Sum_probs=105.2
Q ss_pred CCCCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEecc
Q psy15544 8 PPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPL 87 (125)
Q Consensus 8 p~~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp~ 87 (125)
|.+++|.|++||+++|++|++++||+||++||++.+ +|+++|++||++|||+ ++|+++|||++++|++|+++|+|||
T Consensus 44 p~~~~~~v~aGl~~~l~~L~~~~ft~~ei~~l~~~~--~f~~~f~~~L~~~~f~-~~I~a~pEG~~v~~~epvl~IeGp~ 120 (464)
T PRK09243 44 PFGRGYAVFAGLERLLEYLENLRFTEEDIEYLRSLG--IFDEDFLDYLRNFRFT-GDVRAVPEGELVFPNEPLLRVEGPL 120 (464)
T ss_pred CCCcchHHHHHHHHHHHHHHhCCCCHHHHHHHHhcC--CCCHHHHHHHHhCCCC-CeEEEEeCCccccCCcEEEEEEecH
Confidence 567899999999999999999999999999999884 8999999999999999 6999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 88 IIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 88 ~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
.++++|||++|++||++|+|||||+||+++|+
T Consensus 121 ~~~~l~Et~lL~il~~~s~iATka~r~~~~a~ 152 (464)
T PRK09243 121 AEAQLLETLLLNIINFQTLIATKAARIVSAAG 152 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999986
No 6
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=99.96 E-value=3.1e-29 Score=209.67 Aligned_cols=100 Identities=19% Similarity=0.265 Sum_probs=93.9
Q ss_pred CCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecC----CeeEEEEEe
Q psy15544 10 IRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFP----RVPLLRVEG 85 (125)
Q Consensus 10 ~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p----~ep~i~I~G 85 (125)
+++| ++||+++|++|++++||+||++||++.+| +|+++|++||++|||+ +||+++++ |+|+|+|+|
T Consensus 39 ~~~~--~~gl~~~i~~l~~l~ft~~el~yL~~~~~-~~~~~fl~~L~~frf~-------~e~~~v~~~~~~~~~~i~i~G 108 (377)
T cd01401 39 LEEA--AEALREQIDHLANLRFSEEELAYLRRSLP-FLKPDYLDYLELFRLN-------PEEVVVRLDTGKGQLDIRISG 108 (377)
T ss_pred chhH--HHHHHHHHHHHHhCCCCHHHHHHHHhccC-CCCHHHHHHHhcCCCC-------cCeeEEecCCCCCeEEEEEEE
Confidence 4555 89999999999999999999999997777 9999999999999999 68898888 899999999
Q ss_pred cchhHHHHHHHHHHHHhh---------------HHHHHHHHHHhHHhhc
Q psy15544 86 PLIIVQLLETTLLTLVNF---------------ASWHNDILSTSMISSQ 119 (125)
Q Consensus 86 p~~e~~l~Et~lLaiIs~---------------~s~iAT~aa~~~~aa~ 119 (125)
||.++||||||||++||+ ++++||||+|++.+|.
T Consensus 109 p~~~~~L~Et~lL~iise~~~~~~~~~~~~~~~~~~~atKa~r~~~~a~ 157 (377)
T cd01401 109 PWKDTILYEVPLLAIVSEVYFRFRDADWDYEEQLEKLEEKLERLLEEAK 157 (377)
T ss_pred eHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999997 7999999999999994
No 7
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=99.96 E-value=8.5e-29 Score=208.58 Aligned_cols=108 Identities=31% Similarity=0.488 Sum_probs=103.4
Q ss_pred cCCCCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEec
Q psy15544 7 SPPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGP 86 (125)
Q Consensus 7 ~p~~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp 86 (125)
.|.+++|++++|++++|+.|++|+||+||++||+++ + +++++|++||+ +|+ .+++++|||++++|+||+|+|+||
T Consensus 47 ~p~~~~~~~~~gl~~~l~~l~~l~fs~ee~~~L~~~-~-~~~~~fl~~L~--~f~-~~i~a~~eg~~~~~~ep~l~i~G~ 121 (405)
T COG1488 47 LPFLGGYAVFAGLEEVLELLENLRFSEEEIAYLRSL-P-FFKPDFLNYLR--RFP-LDIYAVPEGTVVFPNEPVLRIEGP 121 (405)
T ss_pred CcccchHHHHHHHHHHHHHHhhcCCCHHHHHHHhhc-c-cccHHHHHHHh--hCC-CceEEEeccccccCCCceEEEEec
Confidence 356789999999999999999999999999999998 6 99999999999 777 889999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 87 LIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 87 ~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
|.+++||||++|++||++|+|||||+|++.+|+
T Consensus 122 ~~e~~l~Et~lL~ii~~~~~iatka~r~~~~a~ 154 (405)
T COG1488 122 YLETILLETPLLGIINEASLIATKAARVKDAAG 154 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999996
No 8
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=99.95 E-value=2.5e-28 Score=205.12 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=90.9
Q ss_pred CCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCC-c--eEEEeeCCeeecCCeeEEEEEec
Q psy15544 10 IRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQ-V--TLYAIQEGSVVFPRVPLLRVEGP 86 (125)
Q Consensus 10 ~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~-~--~v~a~~EG~v~~p~ep~i~I~Gp 86 (125)
++.+.+++||+++|++|++++||+||++||++.|| +|+++|++||++|||+| + ++++.+| |+|.|+|+||
T Consensus 39 ~~~~~~~~gl~~~i~~l~~l~ft~eel~yL~~~~~-~~~~~fl~~L~~frf~~e~~v~i~~~~e------g~~~i~i~Gp 111 (394)
T TIGR01514 39 LFLKEAAEALREEISALGNLRFTDDEIEYLKQELP-YLKSDYIDYLRNFRFHPEEQVEVGIDDK------GKLDIRISGS 111 (394)
T ss_pred CcchhHHHHHHHHHHHHHHCCCCHHHHHHHHhccC-CCCHHHHHHHHhCCCCCCceeEEeeCCC------CcEEEEEEee
Confidence 34566669999999999999999999999999777 99999999999999996 3 3444454 4799999999
Q ss_pred chhHHHHHHHHHHHHhh-------------HHH--HHHHHHHhHHhhc
Q psy15544 87 LIIVQLLETTLLTLVNF-------------ASW--HNDILSTSMISSQ 119 (125)
Q Consensus 87 ~~e~~l~Et~lLaiIs~-------------~s~--iAT~aa~~~~aa~ 119 (125)
|.++||||||||++||+ +++ +||||+|++.+|+
T Consensus 112 ~~~~~L~EtplLaiine~~~~~~~~~~~~~~~~~~iatKa~rl~~~a~ 159 (394)
T TIGR01514 112 WRDTILYEIPLLAIISELYFRFRDAEADYEQQLEVLESKLDQLKAEIA 159 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998 555 9999999999985
No 9
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=99.95 E-value=4.6e-28 Score=207.08 Aligned_cols=117 Identities=18% Similarity=0.208 Sum_probs=104.9
Q ss_pred ccccccCCCC--cchhhhhHHHHHHH-HhcCCCCHHHHHHHHhhCC-----CCCCHhHHHHHhcCCCCCceEEEeeCCee
Q psy15544 2 SSYVLSPPIR--SPCVLYAVPGLSAF-RIHSRLLFTDIDYLKETLP-----PCVEEEFYEFLRSVTADQVTLYAIQEGSV 73 (125)
Q Consensus 2 ~~~~~~p~~~--~~~v~~gl~~~i~~-l~~l~ft~eEi~yL~~~~~-----~~f~~~fl~~L~~~rf~~~~v~a~~EG~v 73 (125)
++|++.=.++ +++|++|||..|+. +.+ +||+++++|+++.++ ..|+++|++||++++|.|++|+|+|||++
T Consensus 33 ~~~~~~R~~~~~~~~vf~GLq~~i~~~l~~-~~t~~~i~~~~~~~~~~~g~~~f~~~~~~~L~~~~~~p~~I~AvpEGtv 111 (470)
T PHA02594 33 MFYLEPRGGKFFDKVVVFGIQYFVKKYFFE-PITMEVVEEAHELVKAHLGKDVFNREHWEALHDLGYLPIEVRAVPEGTV 111 (470)
T ss_pred EEEEEecCCCCCCEEEEeeHHHHHHHHHhc-CCCHHHHHHHHHhhhhccCCCccCHHHHHHHHhCCCCcceEEEecCCce
Confidence 5666652222 68999999999998 888 999999999998631 13899999999999999999999999999
Q ss_pred ecCCeeEEEEEecc----hhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 74 VFPRVPLLRVEGPL----IIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 74 ~~p~ep~i~I~Gp~----~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
|||++|+++|+||. ++++++||.||++|||+|+|||+|+|||++++
T Consensus 112 vf~~~Pll~Ve~~~~~f~w~~~~lET~lL~~i~~~s~vAT~A~r~~~~~~ 161 (470)
T PHA02594 112 VPVKVPVLTIENTHPDFFWLAGYLETVILRGVWYPSTVATLSRECKKILK 161 (470)
T ss_pred ecCCCCEEEEEeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 59999999999999999999999999999986
No 10
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=99.95 E-value=1.5e-27 Score=200.86 Aligned_cols=95 Identities=19% Similarity=0.264 Sum_probs=88.6
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEecchhHHHHHH
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLET 95 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et 95 (125)
+.||+++|++|++++||+||++||++ |+ +|+++|++||++|||++.+|++.+|| |+|+|+|+|||.++|||||
T Consensus 52 ~~gl~~~i~~l~~l~ft~eei~yL~~-~~-~~~~~fl~~L~~frf~~~~v~~~~eg-----~~~~i~I~Gp~~~~~L~Et 124 (400)
T PRK05321 52 IDEIREQLDHLCTLRLTDDELDYLRG-LP-FFKPDFLDWLRLFRLNPYEVTVSIDD-----GQLDIRIEGPWLETILWEV 124 (400)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHh-CC-CCCHHHHHHHHhCCCCccEEEEEcCC-----CeEEEEEEEeHHHHHHHHH
Confidence 34999999999999999999999977 57 99999999999999997799999998 8999999999999999999
Q ss_pred HHHHHHhh-----H----------HHHHHHHHHhHHh
Q psy15544 96 TLLTLVNF-----A----------SWHNDILSTSMIS 117 (125)
Q Consensus 96 ~lLaiIs~-----~----------s~iAT~aa~~~~a 117 (125)
|||++||+ + +.+||||+|++.+
T Consensus 125 ~lL~iise~~~~~~~~~~~~~~a~~~iatKa~r~~~a 161 (400)
T PRK05321 125 PLLAIISELYFRARSPEVLYAQAKRRLWEKIELLKAL 161 (400)
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHhc
Confidence 99999997 4 6799999999776
No 11
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=99.95 E-value=2.1e-27 Score=202.88 Aligned_cols=116 Identities=22% Similarity=0.098 Sum_probs=103.6
Q ss_pred cccccc--CCCCcchhhhhHHHHHH-HHhcCCCCHHHHHHHHhhC---CCCCCHhHHHHHhc---CCCCCceEEEeeCCe
Q psy15544 2 SSYVLS--PPIRSPCVLYAVPGLSA-FRIHSRLLFTDIDYLKETL---PPCVEEEFYEFLRS---VTADQVTLYAIQEGS 72 (125)
Q Consensus 2 ~~~~~~--p~~~~~~v~~gl~~~i~-~l~~l~ft~eEi~yL~~~~---~~~f~~~fl~~L~~---~rf~~~~v~a~~EG~ 72 (125)
++|++. |.+++|+|++|||..|+ +|.++ ||++|++|+++.. ...|++++++++.+ ++|+ ++|+|+|||+
T Consensus 30 f~~f~rr~p~~~~~~v~~GL~~~l~~yl~~~-ft~~~i~~~~~~~~~~~~~f~~~~~~~~~~~~~g~~p-~~I~AvpEGt 107 (463)
T PRK09198 30 YSYLESRSGGRYDKVVFFGLQYFLKEYLIQP-ITEAFIDEAKALLVAHGLPFNRAGWRRIVDKYGGYLP-LRIKAVPEGS 107 (463)
T ss_pred EEEEEEeCCCCCCeEEEEEHHHHHHHHHHhc-CCHHHHHHHHhhhhhccCccCHHHHHHHHHhcCCCCc-eEEEEecCCc
Confidence 455554 66799999999999998 89999 9999999999873 11489997777765 5888 9999999999
Q ss_pred eecCCeeEEEEEecchhHH----HHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 73 VVFPRVPLLRVEGPLIIVQ----LLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 73 v~~p~ep~i~I~Gp~~e~~----l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
++||++|+++|+||..+++ ++||.||++|||+|+|||+|+|||++|+
T Consensus 108 vv~~~~Pll~V~~~~~e~~wL~~~lET~lL~~i~~~s~vAT~A~r~~~~~~ 158 (463)
T PRK09198 108 VVPVHNVLMTIENTDPEFFWLPNYLETLLLRNVWYPSTVATISWEYKQLIR 158 (463)
T ss_pred eecCCCCEEEEEeCcHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 6999999999999999999999999986
No 12
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=99.93 E-value=1.6e-25 Score=188.80 Aligned_cols=118 Identities=17% Similarity=0.086 Sum_probs=104.9
Q ss_pred Ccccccc--CCCCcchhhhhHHHHHHHHhcCCCCHHH-----HHHHHhhCC---CCCCHhHHHHHhc---CCCCCceEEE
Q psy15544 1 MSSYVLS--PPIRSPCVLYAVPGLSAFRIHSRLLFTD-----IDYLKETLP---PCVEEEFYEFLRS---VTADQVTLYA 67 (125)
Q Consensus 1 ~~~~~~~--p~~~~~~v~~gl~~~i~~l~~l~ft~eE-----i~yL~~~~~---~~f~~~fl~~L~~---~rf~~~~v~a 67 (125)
++||++. |+++++.|++|||..++.+.+.+||+++ .++++.... ..|++++++||.+ ++|+ ++|+|
T Consensus 22 vfs~f~~R~~~~~~~~v~~GLq~~l~~~l~~~f~~~~~i~~a~~~~~~~~~~~~~~f~~~~~~~i~~l~~~~lp-~~I~A 100 (407)
T cd01569 22 VYSYLEPRGGKYYDQTVFFGLQYFLKKYLIDPVNRDFFIDEAEAVFEAHFGMNDLPFNEDGWRHILELHDGYLP-IEIRA 100 (407)
T ss_pred EEEEEEecCCCCCCeEEEeeHHHHHHHHHhcCCCHHHhHHHHHHHHHhcCcccccCcCHHHHHHHHHHcCCCCc-eEEEE
Confidence 3567764 3347899999999999999999999999 557776631 0489999999988 7887 99999
Q ss_pred eeCCeeecCCeeEEEEEecchhH----HHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 68 IQEGSVVFPRVPLLRVEGPLIIV----QLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 68 ~~EG~v~~p~ep~i~I~Gp~~e~----~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
+|||++++|++|+++|+||..++ +++||.||++|||+|+|||+|+|||++|+
T Consensus 101 vpEGtvv~~~~Pll~Ve~t~~e~~Wl~~~lET~lL~~iw~~s~vAT~A~r~k~~~~ 156 (407)
T cd01569 101 VPEGTVVPTKNVLMTVENTDPDFFWLTNYLETILLRNVWYPSTVATISREYKKILR 156 (407)
T ss_pred ecCCceecCCCCEEEEEecchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888 99999999999999999999999999996
No 13
>KOG2511|consensus
Probab=99.92 E-value=9e-26 Score=186.53 Aligned_cols=112 Identities=34% Similarity=0.420 Sum_probs=105.7
Q ss_pred CCCCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEecc
Q psy15544 8 PPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPL 87 (125)
Q Consensus 8 p~~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp~ 87 (125)
|.+.+|=+++||+++|++|+|++||+|||+|+++.|| +.+++|.+||++..++...+.+++||+++||+.|.|+|+|||
T Consensus 42 pf~g~~~~f~~Lee~irfl~N~~lt~eei~~lkk~lP-~~eeaf~eyl~~l~~s~~~~~aIsegSvvf~k~pli~i~Gp~ 120 (420)
T KOG2511|consen 42 PFGGNYEAFNWLEEQIRFLANLKLTDEEIDYLKKELP-YLEEAFYEYLRGLNCSDHPEEAISEGSVVFEKKPLIRIEGPW 120 (420)
T ss_pred CCCchHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhCC-CChHHHHHHHhhcCCCcCchhhcccCceeccCCceEEEecch
Confidence 4557889999999999999999999999999999999 999999999998887777899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhcc
Q psy15544 88 IIVQLLETTLLTLVNFASWHNDILSTSMISSQL 120 (125)
Q Consensus 88 ~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~~ 120 (125)
..+||+|||+|++||+++++||.|++-++++.-
T Consensus 121 ~~~~l~E~plLnLvs~a~~~~~da~~~r~~~g~ 153 (420)
T KOG2511|consen 121 KVTILYEIPLLNLVSEAYFKFVDADWHREVQGE 153 (420)
T ss_pred hheeeeechHHHHhhhHHheeeccccchhccch
Confidence 999999999999999999999999999988754
No 14
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.90 E-value=1.8e-23 Score=171.63 Aligned_cols=108 Identities=30% Similarity=0.358 Sum_probs=102.7
Q ss_pred CCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEecchh
Q psy15544 10 IRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLII 89 (125)
Q Consensus 10 ~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp~~e 89 (125)
++++.|++||+++|+.|++++||++|++||++.. .+.++|..++...++. .+|++++||+++++++|+|+|+|||.+
T Consensus 36 ~~~~~v~~gl~~~l~~l~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~-~~i~a~~eG~~~~~~~~~i~IeG~~~~ 112 (343)
T cd01567 36 GGDYIVFAGLEEVLKLLENLRFTEEEIEYLKKLL--IFGEFFLYLLFLGKLP-LEIYALPEGTVVFPKEPLLTIEGPWPE 112 (343)
T ss_pred CCCeeHHHHHHHHHHHHHhCCCCHHHHHHHHhcC--CCcHHHHHHhhcCCCc-eEEEEeCCcccccCCCeEEEEEechHH
Confidence 3578999999999999999999999999999884 7999999999988888 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhHHhhcc
Q psy15544 90 VQLLETTLLTLVNFASWHNDILSTSMISSQL 120 (125)
Q Consensus 90 ~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~~ 120 (125)
+++|||+||+++|++|.+||+|.+++.+|+.
T Consensus 113 ~~~~Et~lL~i~~~~t~~at~~~~~~~~a~~ 143 (343)
T cd01567 113 AGLLETPLLAIWNEATSIATKAARKKLAAGG 143 (343)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998875
No 15
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=99.64 E-value=6e-16 Score=128.85 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=72.2
Q ss_pred cchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEecchhHH
Q psy15544 12 SPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQ 91 (125)
Q Consensus 12 ~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp~~e~~ 91 (125)
+++|+||++++++.++.+.+++++ .+++++|||++++||||+++|+||..+++
T Consensus 48 ~~~VlaGleea~~ll~~l~~~~~~---------------------------~~i~a~~eG~~v~~gepvl~i~G~~~~l~ 100 (352)
T PRK07188 48 ENAVLCGTDEVIALLKTFAKDPSK---------------------------LKIRYLKDGDIINPFETVLEIEGPYENFG 100 (352)
T ss_pred CCeEEecHHHHHHHHHHcCCCccc---------------------------eEEEEcCCCCEecCCCEEEEEEEcHHHHH
Confidence 789999999888777765444222 26889999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 92 LLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 92 l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
++|+.+|++++|+|+|||+|+||+.+|+
T Consensus 101 ~~Et~iLnlL~~~SgIAT~a~r~v~aA~ 128 (352)
T PRK07188 101 FLEGIIDGILARRTSVATNAYNVVQAAN 128 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999998
No 16
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=99.46 E-value=2.6e-13 Score=112.62 Aligned_cols=79 Identities=24% Similarity=0.356 Sum_probs=71.4
Q ss_pred CCCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEecch
Q psy15544 9 PIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLI 88 (125)
Q Consensus 9 ~~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp~~ 88 (125)
|+++++|+||+++..+.++++ . .+++.++||+.++||+|+++|+||+.
T Consensus 48 p~~~~~i~aG~~~a~~~~~~~-------------------------------~-~~v~~~~dG~~v~~g~~il~i~G~~~ 95 (343)
T PRK08662 48 PKGEWGVFAGLEEVLELLEGK-------------------------------P-VDVYALPEGTLFDPKEPVMRIEGPYL 95 (343)
T ss_pred CCCCCEEEccHHHHHHHHhhC-------------------------------C-cEEEEeCCCCEecCCceEEEEEEcHH
Confidence 378999999999888776532 1 56789999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 89 IVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 89 e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
...++|+++||++++.|.|||++++++.+|+
T Consensus 96 ~ll~~Er~~Ln~L~~~SgIAT~t~~~v~aa~ 126 (343)
T PRK08662 96 EFGIYETALLGILAHASGIATAAARCKEAAG 126 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999985
No 17
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=99.46 E-value=2.6e-13 Score=108.09 Aligned_cols=80 Identities=28% Similarity=0.293 Sum_probs=72.1
Q ss_pred chhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEecchhHHH
Q psy15544 13 PCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQL 92 (125)
Q Consensus 13 ~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp~~e~~l 92 (125)
+.|++|++++++.++.++| ..+..+++++||+.+.+|+|+++|+|||.++++
T Consensus 29 ~~v~~Gl~~~~~~l~~l~~----------------------------~~~~~~~~~~eG~~v~~g~~vl~i~G~~~~~~~ 80 (281)
T cd00516 29 YGVLAGLEEALELLELLRF----------------------------PGPLVILAVPEGTVVEPGEPLLTIEGPARELLL 80 (281)
T ss_pred CEEEcCHHHHHHHHHhcCC----------------------------CCceEEEECCCCCEecCCCEEEEEEEcHHHHHH
Confidence 6899999999999887755 112578889999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHhhcc
Q psy15544 93 LETTLLTLVNFASWHNDILSTSMISSQL 120 (125)
Q Consensus 93 ~Et~lLaiIs~~s~iAT~aa~~~~aa~~ 120 (125)
+|+++|+++++.|.|||++++++.+|+-
T Consensus 81 ~E~~~Lnil~~~sgiAt~t~~~v~~~~~ 108 (281)
T cd00516 81 LERVLLNLLQRLSGIATATARYVEAAKG 108 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999864
No 18
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.36 E-value=4e-12 Score=103.76 Aligned_cols=76 Identities=28% Similarity=0.342 Sum_probs=68.5
Q ss_pred chhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEecchhHHH
Q psy15544 13 PCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQL 92 (125)
Q Consensus 13 ~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp~~e~~l 92 (125)
|+|+||+++..+.+..+ +.++++++||+.+.||+|+++|+||..+...
T Consensus 35 ~~v~aG~~~~~~~~~~~--------------------------------~~~i~~~~dG~~v~~g~~i~~i~G~~~~ll~ 82 (302)
T cd01571 35 WAVLCGLEEVLALLEGL--------------------------------PVKVYALPEGTIFNPKEPVLRIEGPYQDFGE 82 (302)
T ss_pred hHHHhhHHHHHHHHhCC--------------------------------CeEEEEeCCCCEECCCCcEEEEEeCHHHHHH
Confidence 79999999887665432 2678889999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHhhcc
Q psy15544 93 LETTLLTLVNFASWHNDILSTSMISSQL 120 (125)
Q Consensus 93 ~Et~lLaiIs~~s~iAT~aa~~~~aa~~ 120 (125)
.|+.+|++++|.|+|||++++++.+++-
T Consensus 83 ~Er~~Ln~L~~~SgIAT~t~~~v~~~~~ 110 (302)
T cd01571 83 LETAILGILARASSIATNAARVKLAAGD 110 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999863
No 19
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=99.07 E-value=5.3e-10 Score=90.21 Aligned_cols=57 Identities=25% Similarity=0.251 Sum_probs=53.8
Q ss_pred ceE-EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 63 VTL-YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 63 ~~v-~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
.++ +.++||+.+.||+++++|+||.......|..+||+++|.|+|||++++++.+|+
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~G~~~~ll~~Er~~ln~l~~~SGIAT~t~~~v~~~~ 113 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAEGPAAALHLGWKVAQTLLEWASGIATATAEMVAAAR 113 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455 468999999999999999999999999999999999999999999999999996
No 20
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=99.02 E-value=1.3e-09 Score=87.72 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=54.5
Q ss_pred ceE-EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhcc
Q psy15544 63 VTL-YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQL 120 (125)
Q Consensus 63 ~~v-~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~~ 120 (125)
.++ +.++||+.+.||+++++|+||..+....|..+||++.+.|.|||++++++.+|+-
T Consensus 57 ~~v~~~~~dG~~v~~g~~i~~i~G~~~~l~~~Er~~ln~L~~~sgIAT~t~~~v~~a~~ 115 (269)
T cd01568 57 IEVEWLVKDGDRVEAGQVLLEVEGPARSLLTAERVALNLLQRLSGIATATRRYVEAARG 115 (269)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455 7789999999999999999999999999999999999999999999999999863
No 21
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=98.86 E-value=1.2e-08 Score=82.19 Aligned_cols=78 Identities=19% Similarity=0.144 Sum_probs=67.0
Q ss_pred CcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCce-EEEeeCCeeecCCeeEEEEEecchh
Q psy15544 11 RSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVT-LYAIQEGSVVFPRVPLLRVEGPLII 89 (125)
Q Consensus 11 ~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~-v~a~~EG~v~~p~ep~i~I~Gp~~e 89 (125)
|+.+|++|+++..+.++.+ . .+ .+.++||+.+.+|+++++|+|+...
T Consensus 34 r~~~v~~G~~~~~~i~~~~--------------~------------------~~v~~~~~dG~~v~~g~~i~~i~G~~~~ 81 (265)
T TIGR00078 34 KEDGVLAGLPVARRVFEQL--------------G------------------VQVEWLVKDGDRVEPGEVVAEVEGPARS 81 (265)
T ss_pred cCCEEEECHHHHHHHHHHc--------------C------------------eEEEEEeCCCCEecCCCEEEEEEEcHHH
Confidence 5678889998777655422 1 34 3778999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhHHhhcc
Q psy15544 90 VQLLETTLLTLVNFASWHNDILSTSMISSQL 120 (125)
Q Consensus 90 ~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~~ 120 (125)
....|..+||++.+.|.|||++++++.+|+-
T Consensus 82 il~~Er~~ln~l~~~SGIAT~t~~~v~~~~~ 112 (265)
T TIGR00078 82 LLTAERTALNFLGRLSGIATATRKYVEAARG 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999863
No 22
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.76 E-value=4e-08 Score=79.18 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=54.3
Q ss_pred ceE-EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhcc
Q psy15544 63 VTL-YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQL 120 (125)
Q Consensus 63 ~~v-~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~~ 120 (125)
.++ +.++||+.+-+|+++++|+|+.......|..+||++.+.|.|||++++++.+|+-
T Consensus 58 l~v~~~~~dG~~v~~g~~i~~i~G~~~~ll~~Er~~ln~L~~~SGIAT~t~~~v~~a~~ 116 (268)
T cd01572 58 IEVEWLVKDGDRVEPGQVLATVEGPARSLLTAERTALNFLQRLSGIATLTRRYVEALAG 116 (268)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455 6679999999999999999999999999999999999999999999999999964
No 23
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.64 E-value=1.4e-07 Score=76.45 Aligned_cols=56 Identities=21% Similarity=0.295 Sum_probs=52.6
Q ss_pred EEEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhcc
Q psy15544 65 LYAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQL 120 (125)
Q Consensus 65 v~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~~ 120 (125)
.+.++||+.+-+|+++++++||.......|-.+||++.+.|.|||++++++.+|+-
T Consensus 61 ~~~~~dG~~v~~g~~i~~i~G~a~~ll~~Er~~ln~l~~~SGIAT~t~~~v~~~~~ 116 (273)
T PRK05848 61 VFTIKDGERFKKGDILMEIEGDFSMLLKVERTLLNLLQHSSGIATLTSRYVEALES 116 (273)
T ss_pred EEEcCCCCEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34679999999999999999999999999999999999999999999999999863
No 24
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.61 E-value=2e-07 Score=75.81 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=52.9
Q ss_pred ceEEE-eeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 63 VTLYA-IQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 63 ~~v~a-~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
.++.. ++||+.+.||+++++++||.......|-.+||++.+.|.|||++++++.+|+
T Consensus 58 ~~v~~~~~dG~~v~~g~~i~~i~G~~~~ll~~Er~~ln~l~~~SGIAT~T~~~v~~~~ 115 (278)
T PRK08385 58 VKVEVRKRDGEEVKAGEVILELKGNARAILLVERTALNIIGRMSGIATETRKLVELVK 115 (278)
T ss_pred CEEEEEcCCCCEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 6999999999999999999999999999999999999999999999999985
No 25
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.59 E-value=2.6e-07 Score=75.11 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=51.6
Q ss_pred EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 66 YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 66 ~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
+.++||+.+.||+++++++||.......|-.+||++.|.|.|||++++++.+|.
T Consensus 70 ~~~~dG~~v~~g~~i~~i~G~~~~ll~~ER~~ln~l~~~SGIAT~T~~~v~~~~ 123 (277)
T PRK05742 70 WQVADGERVSANQVLFHLEGPARSLLTGERSALNFLQLLSGVATRARHYADLVA 123 (277)
T ss_pred EEeCCCCEEcCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567999999999999999999999999999999999999999999999999983
No 26
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.28 E-value=2.4e-06 Score=69.94 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=52.2
Q ss_pred eE-EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhh
Q psy15544 64 TL-YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISS 118 (125)
Q Consensus 64 ~v-~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa 118 (125)
++ +.++||+.+.||+++++++|+.......|..+||++.|.|.|||++++++.+|
T Consensus 77 ~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~t~~~v~~~ 132 (289)
T PRK07896 77 EVLDRVEDGARVPPGQALLTVTAPTRGLLTAERTMLNLLCHLSGIATATAAWVDAV 132 (289)
T ss_pred EEEEEcCCCCEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 55799999999999999999999999999999999999999999999999998
No 27
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.26 E-value=4.8e-06 Score=68.08 Aligned_cols=53 Identities=19% Similarity=0.119 Sum_probs=50.8
Q ss_pred EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhh
Q psy15544 66 YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISS 118 (125)
Q Consensus 66 ~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa 118 (125)
+..+||+.+.+|+++++++||-...-..|-.+||++.|.|.|||++++++.++
T Consensus 76 ~~~~dG~~v~~g~~i~~~~G~a~~ll~~eR~~lN~l~~~SGIAT~T~~~v~~~ 128 (288)
T PRK07428 76 PLVAEGAACESGQVVAEIEGPLDALLMGERVALNLAMRLSGIATLTRQYVEKI 128 (288)
T ss_pred EEcCCCCEecCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44699999999999999999999999999999999999999999999999998
No 28
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=98.05 E-value=2.7e-05 Score=64.01 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=51.4
Q ss_pred EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 66 YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 66 ~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
+.++||+.+-+|+++++++|+-......|-.+||++.+.|.|||++++++.+|.
T Consensus 89 ~~~~dG~~v~~G~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~~~~ 142 (296)
T PRK09016 89 WHVDDGDVITANQTLFELTGPARVLLTGERTALNFVQTLSGVATEVRRYVELLA 142 (296)
T ss_pred EEcCCCCEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 557999999999999999999999999999999999999999999999999983
No 29
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.03 E-value=3.7e-05 Score=62.54 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=51.8
Q ss_pred eEEE-eeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 64 TLYA-IQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 64 ~v~a-~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
++.. .+||+.+.+|+++++++|+-......|-.+||++.|.|.|||++++++.++.
T Consensus 65 ~v~~~~~dG~~v~~g~~i~~~~G~~~~ll~~er~~ln~l~~~sGIAT~t~~~v~~~~ 121 (277)
T PRK08072 65 EVELHKKDGDLVKKGEIIATVQGPVASLLTGERVILNLIQRMSGIATMTRKAVLALD 121 (277)
T ss_pred EEEEEeCCCCEEcCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444 5999999999999999999999999999999999999999999999999984
No 30
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.99 E-value=3.5e-05 Score=63.19 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=49.8
Q ss_pred eeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 68 IQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 68 ~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
.+||+.+-+|+++++++||-......|=..||++.|-|.|||++++++.++.
T Consensus 79 ~~dG~~v~~G~~i~~v~G~a~~ll~~ER~alN~l~~~SGIAT~T~~~V~~~~ 130 (290)
T PRK06559 79 FKDGDRLTSGDLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEALG 130 (290)
T ss_pred CCCCCEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4999999999999999999999999999999999999999999999999983
No 31
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.96 E-value=5.1e-05 Score=61.94 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=51.1
Q ss_pred EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 66 YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 66 ~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
+..+||+.+.+|+++++++|+-......|-.+||++.+.|.|||++++++.+++
T Consensus 74 ~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~~~ 127 (281)
T PRK06106 74 RHLPDGAAVAPGDVIATISGPARGLLTAERTALNFLCHLSGIATATASIVAAIA 127 (281)
T ss_pred EEeCCCCEEcCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345999999999999999999999999999999999999999999999999985
No 32
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=97.82 E-value=6.9e-05 Score=62.00 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=51.4
Q ss_pred EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 66 YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 66 ~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
+.++||+.+.+|+++++++||-......|-.+||++.+.|.|||++++++.+++
T Consensus 82 ~~~~dG~~v~~G~~i~~v~G~a~~il~~ER~aLN~L~~~SGIAT~T~~~V~~~~ 135 (308)
T PLN02716 82 WAAIDGDFVHKGLKFGKVTGPAHSILVAERVVLNFMQRMSGIATLTKAMADAAK 135 (308)
T ss_pred EEeCCCCEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456999999999999999999999999999999999999999999999999986
No 33
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.59 E-value=0.00046 Score=56.44 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=50.6
Q ss_pred EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 66 YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 66 ~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
+..+||+.+-+|+++++++||-.....-|=..||++.|-|.|||++++++.++.
T Consensus 69 ~~~~dG~~v~~G~~i~~~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~~~~ 122 (281)
T PRK06543 69 LAVADGERFEAGDILATVTGPARSVLTAERIALNFTQRMSGIATLTAAFVDAVN 122 (281)
T ss_pred EEeCCCCEecCCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446999999999999999999999999999999999999999999999999885
No 34
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=97.47 E-value=0.00045 Score=56.33 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=50.1
Q ss_pred EeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 67 AIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 67 a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
..+||+.+-+|+.+++++||-.....-|=..||++.|-|.|||++++++.++.
T Consensus 65 ~~~dG~~v~~g~~i~~~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~~~~ 117 (277)
T TIGR01334 65 AVPSGSRALAGTLLLEAKGSAGQLHQGWKSAQSVLEWSCGVATYTHKMVTLAK 117 (277)
T ss_pred EeCCCCEeCCCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999885
No 35
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.44 E-value=0.00089 Score=55.13 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=49.8
Q ss_pred EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhh
Q psy15544 66 YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISS 118 (125)
Q Consensus 66 ~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa 118 (125)
+..+||+.+-+|+.+++++||-.....-|=..||++.+-|.|||++++++.++
T Consensus 86 ~~~~dG~~v~~G~~i~~~~G~a~~lL~~ER~aLN~l~~~SGIAT~T~~~V~~~ 138 (294)
T PRK06978 86 WRYREGDRMTADSTVCELEGPARALLTAERNALNFLQLLSGVASATRRYVDRI 138 (294)
T ss_pred EEcCCCCEeCCCCEEEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33589999999999999999999999999999999999999999999999988
No 36
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=97.44 E-value=0.0005 Score=56.26 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=50.0
Q ss_pred EeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 67 AIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 67 a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
..+||+.+-+|+.+++++||-.....-|=..||++.+.|.|||++++++.+++
T Consensus 66 ~~~dG~~v~~G~~i~~~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~~~~ 118 (284)
T PRK06096 66 AVSDGSQANAGQRLISAQGNAAALHQGWKAVQNVLEWSCGVSDYLAQMLALLR 118 (284)
T ss_pred EeCCCCEeCCCCEEEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999885
No 37
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=97.02 E-value=0.0041 Score=50.99 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=50.3
Q ss_pred EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 66 YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 66 ~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
+-++||+-+-||+.+++++||-.....-|=..||++.+.|.|||..+++..++.
T Consensus 68 ~~~~DG~~v~~g~~i~~~~G~a~~lL~~ER~aLN~L~~lSGIAT~T~~~V~~~~ 121 (280)
T COG0157 68 WLVKDGDRVKPGDVLAEIEGPARALLTAERTALNFLQHLSGIATATARMVEALR 121 (280)
T ss_pred EEcCCCCEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 446999999999999999999999999999999999999999999999998875
No 38
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=96.94 E-value=0.004 Score=42.10 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=36.4
Q ss_pred ceEEE-eeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHH
Q psy15544 63 VTLYA-IQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFAS 105 (125)
Q Consensus 63 ~~v~a-~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s 105 (125)
.++.. .+||+-+-+|+++++++||....-..|-.+||++.+.|
T Consensus 45 ~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~l~~~S 88 (88)
T PF02749_consen 45 LEVEWLVKDGDRVEPGDVILEIEGPARALLTAERTALNFLQRLS 88 (88)
T ss_dssp EEEEESS-TT-EEETTCEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCccCCcEEEEEEeCHHHHHHHHHHHHHHHHHhC
Confidence 34443 49999999999999999999999999999999999876
No 39
>KOG3008|consensus
Probab=95.02 E-value=0.037 Score=44.84 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=49.8
Q ss_pred EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 66 YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 66 ~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
|-.+||+-+.|+--+-.|+||--...+-|-.+||+++..|.|||.+..+..+|.
T Consensus 75 W~~KeGs~l~p~~~vaKv~GpAh~IllAERvaLN~l~R~SGIATa~~~~~~aAr 128 (300)
T KOG3008|consen 75 WFLKEGSKLVPVARVAKVRGPAHCILLAERVALNTLARCSGIATAAAAAVEAAR 128 (300)
T ss_pred EEecCCCeecccceeEeecCcceeeeehHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 445899999999889999999999999999999999999999999999998886
No 40
>PHA00650 hypothetical protein
Probab=71.38 E-value=5.8 Score=26.25 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=18.5
Q ss_pred CHHHHHHHHhhCCCCCCHhHHHHHhc
Q psy15544 32 LFTDIDYLKETLPPCVEEEFYEFLRS 57 (125)
Q Consensus 32 t~eEi~yL~~~~~~~f~~~fl~~L~~ 57 (125)
|.||++.|.+. | -.-+|++|||+
T Consensus 8 tredldalagt-p--ahgefldylrg 30 (82)
T PHA00650 8 TREDLDALAGT-P--AHGEFLDYLRG 30 (82)
T ss_pred cHHHHHHhcCC-C--cchhHHHHHhh
Confidence 57888888876 4 67799999984
No 41
>PF14568 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A.
Probab=49.17 E-value=15 Score=24.51 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=16.8
Q ss_pred HHHHHHHHhhCCCCCCHhHHHHHhcCC
Q psy15544 33 FTDIDYLKETLPPCVEEEFYEFLRSVT 59 (125)
Q Consensus 33 ~eEi~yL~~~~~~~f~~~fl~~L~~~r 59 (125)
+++|+-+.+.++--||++|.+||+.+.
T Consensus 1 ee~I~~~E~~Lg~~lP~~Yk~fL~~~~ 27 (120)
T PF14568_consen 1 EEEIEEAEKKLGVKLPEDYKEFLKEYN 27 (120)
T ss_dssp -HHHHHHHHHHTS---HHHHHHHHHC-
T ss_pred ChHHHHHHHHhCCCCCHHHHHHHHHcC
Confidence 467777765543359999999999863
No 42
>smart00860 SMI1_KNR4 SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.
Probab=48.03 E-value=26 Score=22.29 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=20.8
Q ss_pred CCHHHHHHHHhhCCCCCCHhHHHHHhcC
Q psy15544 31 LLFTDIDYLKETLPPCVEEEFYEFLRSV 58 (125)
Q Consensus 31 ft~eEi~yL~~~~~~~f~~~fl~~L~~~ 58 (125)
.|++||+-+.+.++--++++|.+||+.+
T Consensus 2 ~s~~~i~~~e~~lg~~LP~~y~~f~~~~ 29 (129)
T smart00860 2 ASEEEIAELEKKLGIKLPEDYKEFLLLH 29 (129)
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHc
Confidence 4677888887654435899999999865
No 43
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=44.24 E-value=7.8 Score=24.16 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=14.7
Q ss_pred CCCceEEEeeCCeeecCCeeEEEEE
Q psy15544 60 ADQVTLYAIQEGSVVFPRVPLLRVE 84 (125)
Q Consensus 60 f~~~~v~a~~EG~v~~p~ep~i~I~ 84 (125)
|++++|.-+..|. |.|+|+
T Consensus 1 f~~GDvV~LKSGG------p~MTV~ 19 (53)
T PF09926_consen 1 FKIGDVVQLKSGG------PRMTVT 19 (53)
T ss_pred CCCCCEEEEccCC------CCeEEE
Confidence 5678888888764 788887
No 44
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=44.04 E-value=14 Score=31.61 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=42.4
Q ss_pred hcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEe
Q psy15544 27 IHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEG 85 (125)
Q Consensus 27 ~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~G 85 (125)
..+.++++.++-|... + .+-.+..+.+.-+||+ .+..-+++||+++++.-..-|.|
T Consensus 12 ~~l~~~~~~v~~l~~r-~-~lr~~~~~~~~ylrF~-k~~~~ie~GTvi~~~~~~~vi~G 67 (382)
T COG1423 12 EKLGLSEERVEKLFER-G-SLREDEFKGIVYLRFK-KEFGGIERGTVIFKRDELFVIRG 67 (382)
T ss_pred HHhCCCHHHHHHHHhc-C-ceehhhccceEEEEee-hhhCCCcCceEEEecCCceEEec
Confidence 3567899999988765 3 5666666668888999 88999999999999744455555
No 45
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=43.21 E-value=37 Score=20.17 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=23.4
Q ss_pred ceEEEe--eCCeeecCCeeEEEEEecchhHH
Q psy15544 63 VTLYAI--QEGSVVFPRVPLLRVEGPLIIVQ 91 (125)
Q Consensus 63 ~~v~a~--~EG~v~~p~ep~i~I~Gp~~e~~ 91 (125)
+.|..+ .||+.|-.|++++++..+-.+..
T Consensus 11 G~V~~v~V~~G~~VkkGd~L~~ld~~~~~~~ 41 (50)
T PF13533_consen 11 GRVESVYVKEGQQVKKGDVLLVLDSPDLQAQ 41 (50)
T ss_pred EEEEEEEecCCCEEcCCCEEEEECcHHHHHH
Confidence 666654 79999999999999998866643
No 46
>cd07350 NR_LBD_Dax1 The ligand binding domain of DAX1 protein, a nuclear receptor lacking DNA binding domain. The ligand binding domain of the DAX1 protein: DAX1 (dosage-sensitive sex reversal adrenal hypoplasia congenita critical region on chromosome X gene 1) is a nuclear receptor with a typical ligand binding domain, but lacks the DNA binding domain. DAX1 plays an important role in the normal development of several hormone-producing tissues. Duplications of the region of the X chromosome containing DAX1 cause dosage sensitive sex reversal. DAX1 acts as a global repressor of many nuclear receptors, including SF-1, LRH-1, ERR, ER, AR and PR. DAX1 can form homodimer and heterodimerizes with its alternatively spliced isoform DAX1A and other nuclear receptors such as SHP, ERalpha and SF-1.
Probab=42.76 E-value=20 Score=28.20 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=24.0
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 17 YAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 17 ~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
..+++.++.+..++++++|..+|+..+
T Consensus 127 ~~l~e~~~~l~~L~ld~~E~a~LkAiv 153 (232)
T cd07350 127 RAIKAFLAKCWSLDISTKEYAYLKGTV 153 (232)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 557889999999999999999999864
No 47
>cd06951 NR_LBD_Dax1_like The ligand binding domain of DAX1 protein, a nuclear receptor lacking DNA binding domain. The ligand binding domain of DAX1-like proteins: This orphan nuclear receptor family includes DAX1 (dosage-sensitive sex reversal adrenal hypoplasia congenita critical region on chromosome X gene 1) and the Small Heterodimer Partner (SHP). Both receptors have a typical ligand binding domain, but lack the DNA binding domain, typical to almost all of the nuclear receptors. They function as a transcriptional coregulator by directly interacting with other nuclear receptors. DAX1 and SHP can form heterodimers with each other, as well as with many other nuclear receptors. In addition, DAX1 can also form homodimers. DAX1 plays an important role in the normal development of several hormone-producing tissues. SHP has shown to regulate a variety of target genes.
Probab=42.47 E-value=27 Score=27.16 Aligned_cols=28 Identities=14% Similarity=0.104 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+++..+.+.++++++.|..+|+..+
T Consensus 117 ~~~l~e~~~~l~~L~ld~~Eya~LkAiv 144 (222)
T cd06951 117 VQDIQQFLMKCWSLDLDCKEYAYLKGAV 144 (222)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4557888999999999999999999875
No 48
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]. Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.
Probab=41.39 E-value=24 Score=23.21 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=17.5
Q ss_pred CCHHHHHHHHhhCCCCCCHhHHHHHhc
Q psy15544 31 LLFTDIDYLKETLPPCVEEEFYEFLRS 57 (125)
Q Consensus 31 ft~eEi~yL~~~~~~~f~~~fl~~L~~ 57 (125)
.|++||+-+++.++--++++|.++|+.
T Consensus 2 ~t~~~I~~~E~~lg~~LP~~yk~fl~~ 28 (130)
T PF09346_consen 2 ATEEEIQELEEKLGVRLPDDYKEFLKE 28 (130)
T ss_dssp --HHHHHHHHHHHTS---HHHHHHHH-
T ss_pred CCHHHHHHHHHHhCCCCcHHHHHHHHh
Confidence 488999999776432599999999995
No 49
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=41.39 E-value=47 Score=28.62 Aligned_cols=83 Identities=14% Similarity=0.034 Sum_probs=49.1
Q ss_pred HHHHHHHHhhCCCCCCHhHHHHHhcCC-CCCceEEEeeCCeeecCCeeEEEEE--e--cc--hhHHHHHHHHHHHHhhHH
Q psy15544 33 FTDIDYLKETLPPCVEEEFYEFLRSVT-ADQVTLYAIQEGSVVFPRVPLLRVE--G--PL--IIVQLLETTLLTLVNFAS 105 (125)
Q Consensus 33 ~eEi~yL~~~~~~~f~~~fl~~L~~~r-f~~~~v~a~~EG~v~~p~ep~i~I~--G--p~--~e~~l~Et~lLaiIs~~s 105 (125)
++++++|++. -|+++=++||+... |+|.-+.-+..=+ |.++ .+++. | |. ++.-|+|+.++-+.--..
T Consensus 56 ~~~i~~l~~l---~ft~eei~yL~~~~~~~~~fl~~L~~fr--f~~~-~v~~~~eg~~~~i~I~Gp~~~~~L~Et~lL~i 129 (400)
T PRK05321 56 REQLDHLCTL---RLTDDELDYLRGLPFFKPDFLDWLRLFR--LNPY-EVTVSIDDGQLDIRIEGPWLETILWEVPLLAI 129 (400)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHhCCCCCHHHHHHHHhCC--CCcc-EEEEEcCCCeEEEEEEEeHHHHHHHHHHHHHH
Confidence 4678898887 39999999998864 5544343333211 2221 34444 3 32 344677777776655555
Q ss_pred HH-----------HHHHHHhHHhhccc
Q psy15544 106 WH-----------NDILSTSMISSQLN 121 (125)
Q Consensus 106 ~i-----------AT~aa~~~~aa~~~ 121 (125)
.- +|++++++.+.+..
T Consensus 130 ise~~~~~~~~~~~~~~a~~~iatKa~ 156 (400)
T PRK05321 130 ISELYFRARSPEVLYAQAKRRLWEKIE 156 (400)
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHH
Confidence 44 24666677766543
No 50
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=40.61 E-value=27 Score=18.15 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=11.4
Q ss_pred hhhhHHHHHHHHhc
Q psy15544 15 VLYAVPGLSAFRIH 28 (125)
Q Consensus 15 v~~gl~~~i~~l~~ 28 (125)
|+.||+++|..+.+
T Consensus 8 v~qglhe~ikli~n 21 (23)
T PF08225_consen 8 VFQGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHHHhc
Confidence 78999999987654
No 51
>cd06157 NR_LBD The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators. Ligand-binding domain (LBD) of nuclear receptor (NR): Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions in metazoans, from development, reproduction, to homeostasis and metabolism. The superfamily contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. The members of the family include receptors of steroids, thyroid hormone, retinoids, cholesterol by-products, lipids and heme. With few exceptions, NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD).
Probab=37.73 E-value=29 Score=23.97 Aligned_cols=27 Identities=11% Similarity=-0.098 Sum_probs=23.4
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 17 YAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 17 ~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
..+.+.++.+.++++|++|+..|+..+
T Consensus 86 ~~~~~~~~~~~~L~l~~~E~~~l~ai~ 112 (168)
T cd06157 86 RLLFEFVNPLRALKLDDEEYALLKAIV 112 (168)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 446788899999999999999999875
No 52
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=37.59 E-value=51 Score=28.40 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=18.9
Q ss_pred HHHHHHHHhhCCCCCCHhHHHHHhcC--CCCCc
Q psy15544 33 FTDIDYLKETLPPCVEEEFYEFLRSV--TADQV 63 (125)
Q Consensus 33 ~eEi~yL~~~~~~~f~~~fl~~L~~~--rf~~~ 63 (125)
++++++|.+. -|+++=++||++. -|++.
T Consensus 49 ~~~i~~l~~l---~ft~eel~yL~~~~~~~~~~ 78 (394)
T TIGR01514 49 REEISALGNL---RFTDDEIEYLKQELPYLKSD 78 (394)
T ss_pred HHHHHHHHHC---CCCHHHHHHHHhccCCCCHH
Confidence 3667778776 3888888888773 25543
No 53
>smart00430 HOLI Ligand binding domain of hormone receptors.
Probab=35.58 E-value=41 Score=23.05 Aligned_cols=27 Identities=19% Similarity=0.016 Sum_probs=22.9
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 17 YAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 17 ~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
.-+++.++.+..+++|++|+.+|+..+
T Consensus 80 ~~~~~~~~~l~~L~l~~~E~~~l~ai~ 106 (163)
T smart00430 80 RILQELVKPLRELKLDDEEYALLKAIL 106 (163)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 445777889999999999999998774
No 54
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=35.54 E-value=42 Score=24.97 Aligned_cols=35 Identities=11% Similarity=-0.004 Sum_probs=27.1
Q ss_pred cCCCCHHHHHHHHhh-CC---CCCC----HhHHHHHhcCCCCC
Q psy15544 28 HSRLLFTDIDYLKET-LP---PCVE----EEFYEFLRSVTADQ 62 (125)
Q Consensus 28 ~l~ft~eEi~yL~~~-~~---~~f~----~~fl~~L~~~rf~~ 62 (125)
+|-+++++++.|+.. +. |-|+ |+|++-+++|||+|
T Consensus 96 ~LgL~~~~i~~L~~~~~n~evr~Fn~s~YP~yV~n~~~YrfKp 138 (142)
T PF07801_consen 96 DLGLSEEQIKKLKKNFCNVEVRKFNFSKYPKYVNNWMEYRFKP 138 (142)
T ss_pred eCCCCHHHHHHHHhcCCceEEEECCCccCcHHHHHHHhhcchh
Confidence 677899999999765 31 1233 89999999999995
No 55
>cd07349 NR_LBD_SHP The ligand binding domain of DAX1 protein, a nuclear receptor lacking DNA binding domain. The ligand binding domain of the Small Heterodimer Partner (SHP): SHP is a member of the nuclear receptor superfamily. SHP has a ligand binding domain, but lacks the DNA binding domain, typical to almost all of the nuclear receptors. It functions as a transcriptional coregulator by directly interacting with other nuclear receptors through its AF-2 motif. The closest relative of SHP is DAX1 and they can form heterodimer. SHP is an orphan receptor, lacking an identified ligand.
Probab=35.26 E-value=30 Score=26.97 Aligned_cols=26 Identities=19% Similarity=0.010 Sum_probs=22.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 18 AVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 18 gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
-+++.++.+..++++++|...|+..+
T Consensus 116 ~l~e~~~~l~~L~ld~~Eya~Lkaiv 141 (222)
T cd07349 116 WLQCCLNKFWSLDLSPKEYAYLKGTI 141 (222)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 36788899999999999999999764
No 56
>cd06930 NR_LBD_F2 Ligand-binding domain of nuclear receptor family 2. Ligand-binding domain (LBD) of nuclear receptor (NR) family 2: This is one of the major subfamily of nuclear receptors, including some well known nuclear receptors such as glucocorticoid receptor (GR), mineralocorticoid receptor (MR), estrogen receptor (ER), progesterone receptor (PR), and androgen receptor (AR), other related receptors. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD).
Probab=35.18 E-value=45 Score=23.61 Aligned_cols=32 Identities=13% Similarity=-0.003 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCH
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEE 49 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~ 49 (125)
+..+.+.++.+..+++|++|...|+..+ +|++
T Consensus 84 ~~~~~~~~~~l~~L~l~~~E~~lLkai~--l~~p 115 (165)
T cd06930 84 VQRLQELLSKLRSLQLDPKEYACLKAIV--LFNP 115 (165)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH--HcCC
Confidence 3556778888999999999999999875 4444
No 57
>cd06954 NR_LBD_LXR The ligand binding domain of Liver X receptors, a family of nuclear receptors of ligand-activated transcription factors. The ligand binding domain of Liver X receptors: Liver X receptors (LXRs) belong to a family of nuclear receptors of ligand-activated transcription factors. LXRs operate as cholesterol sensors which protect from cholesterol overload by stimulating reverse cholesterol transport from peripheral tissues to the liver and its excretion in the bile. Oxidized cholesterol derivatives or oxysterols were identified as specific ligands for LXRs. Upon ligand binding a conformational change leads to recruitment of co-factors, which stimulates expression of target genes. Among the LXR target genes are several genes involved in cholesterol efflux from peripheral tissues such as the ATP-binding-cassette transporters ABCA1, ABCG1 and ApoE. There are two LXR isoforms in mammals, LXRalpha and LXRbeta. LXRalpha is expressed mainly in the liver, intestine, kidney, splee
Probab=34.71 E-value=46 Score=25.69 Aligned_cols=28 Identities=11% Similarity=-0.081 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+.+..+.+.+++++++|...|+..+
T Consensus 127 ~~~i~~~~~~l~~L~ld~~E~~lL~aiv 154 (236)
T cd06954 127 INPIFEFSKSMRELQLDDAEYALLIAIN 154 (236)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3556778888999999999999999865
No 58
>PHA02119 hypothetical protein
Probab=34.00 E-value=56 Score=21.98 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=24.4
Q ss_pred CCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEe
Q psy15544 44 PPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEG 85 (125)
Q Consensus 44 ~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~G 85 (125)
|...+.|.+||||.+.++ .. .| + |.+|..|+|++
T Consensus 52 p~i~~~divdylr~lgy~-~~----~~-s--~rnes~i~vta 85 (87)
T PHA02119 52 PAIMPKDIVDYLRSLGYD-AK----SD-S--FRNESVITVTA 85 (87)
T ss_pred CccccHHHHHHHHHccch-hc----cc-c--ccCceEEEEec
Confidence 556789999999998877 21 11 1 57788888875
No 59
>cd06948 NR_LBD_COUP-TF Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family. The ligand binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs): COUP-TFs are orphan members of the steroid/thyroid hormone receptor superfamily. They are expressed in many tissues and are involved in the regulation of several important biological processes, such as neurogenesis, organogenesis, cell fate determination, and metabolic homeostasis. In mammals two isoforms named COUP-TFI and COUP-TFII have been identified. Both genes show an exceptional homology and overlapping expression patterns, suggesting that they may serve redundant functions. Although COUP-TF was originally characterized as a transcriptional activator of the chicken ovalbumin gene, COUP-TFs are generally considered to be repressors of transcription for other nuclear hormone receptors, such as retinoic acid receptor (RAR), thyroid hormone
Probab=33.70 E-value=41 Score=26.17 Aligned_cols=30 Identities=7% Similarity=-0.045 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHh
Q psy15544 19 VPGLSAFRIHSRLLFTDIDYLKETLPPCVEEE 50 (125)
Q Consensus 19 l~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~ 50 (125)
+++.+..+..+++|++|...|+..+ +|++|
T Consensus 118 ~~~l~~~l~~L~ld~~E~~lLkaii--L~npd 147 (236)
T cd06948 118 FQEQVEKLKALHVDSAEFSCLKAIV--LFTSD 147 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH--HcCcc
Confidence 3567788999999999999999875 45433
No 60
>PF06878 Pkip-1: Pkip-1 protein; InterPro: IPR009672 This family consists of several Pkip-1 proteins, which seem to be specific to Nucleopolyhedroviruses. The function of this family is unknown although it has been found that Pkip-1 is not essential for virus replication in cell culture or by in vivo intrahaemocoelic injection [].
Probab=32.53 E-value=38 Score=25.87 Aligned_cols=40 Identities=8% Similarity=-0.007 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEE
Q psy15544 15 VLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLY 66 (125)
Q Consensus 15 v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~ 66 (125)
...|++||+.+|.+...|+++- -+|++=|.++.|++.+|.
T Consensus 44 ~i~G~~EQl~~L~~~~~~~~~k------------~dFindl~eLd~~~~~ie 83 (163)
T PF06878_consen 44 DIFGQEEQLYSLLSANATDEEK------------LDFINDLSELDFDNEEIE 83 (163)
T ss_pred HHHhHHHHHHHHHccccchHHH------------HHHHhhhhhcCCCHHHHH
Confidence 3467888888888744554332 134444555555544443
No 61
>cd06940 NR_LBD_REV_ERB The ligand binding domain of REV-ERB receptors, members of the nuclear receptor superfamily. The ligand binding domain (LBD) of REV-ERB receptors: REV-ERBs are transcriptional regulators belonging to the nuclear receptor superfamily. They regulate a number of physiological functions including the circadian rhythm, lipid metabolism, and cellular differentiation. The LBD domain of REV-ERB is unusual in the nuclear receptor family by lacking the AF-2 region that is responsible for coactivator interaction. REV-ERBs act as constitutive repressors because of their inability to bind coactivators. REV-ERB receptors can bind to two classes of DNA response elements as either a monomer or heterodimer, indicating functional diversity. When bound to the DNA, they recruit corepressors (NcoR/histone deacetylase 3) to the promoter, resulting in repression of the target gene. The porphyrin heme has been demonstrated to function as a ligand for REV-ERB. Like other members of
Probab=32.46 E-value=45 Score=25.10 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 15 VLYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 15 v~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
++..+.+..+.+.+++++++|...|+..+
T Consensus 94 ~~~~~~~~~~~l~~L~ld~~E~a~LkAiv 122 (189)
T cd06940 94 LLNSMFDFSEKLNSLQLSDEEMGLFTAVV 122 (189)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 34567788888999999999999999764
No 62
>cd06942 NR_LBD_Sex_1_like The ligand binding domain of Caenorhabditis elegans nuclear hormone receptor Sex-1 protein. The ligand binding domain (LBD) of Caenorhabditis elegans nuclear hormone receptor Sex-1 protein like: Sex-1 protein of C. elegans is a transcription factor belonging to the nuclear receptor superfamily. Sex-1 plays pivotal role in sex fate of C. elegans by regulating the transcription of the sex-determination gene xol-1, which specifies male (XO) fate when active and hermaphrodite (XX) fate when inactive. The Sex-1 protein directly represses xol-1 transcription by binding to its promoter. However, the active ligand for Sex-1 protein has not yet been identified. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, Sex-1 like receptors have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD).
Probab=32.40 E-value=41 Score=25.14 Aligned_cols=27 Identities=7% Similarity=-0.026 Sum_probs=22.9
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 17 YAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 17 ~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
..+.+.++.+..+++|++|...|+...
T Consensus 85 ~~~~~~~~~l~~L~l~~~E~~lL~Aiv 111 (191)
T cd06942 85 DEMLQFANKILTLNLTNAELALLCAAE 111 (191)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 446688888999999999999999874
No 63
>PF00874 PRD: PRD domain; InterPro: IPR011608 Transcriptional antiterminators and activators containing phosphoenolpyruvate: sugar phosphotransferase system (PTS) regulation domains (PRDs) form a class of bacterial regulatory proteins whose activity is modulated by phosphorylation. These regulators stimulate the expression of genes and operons involved in carbohydrate metabolism. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria [, ] and are often characterised by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators, IPR004341 from INTERPRO) or DNA (for activators), and a duplicated PRD module which is phosphorylated on conserved histidines by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations are thought to modify the stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain [, , ]. PRDs are characterised by the presence of a duplicated regulatory module of ~100 residues that can be reversibly phosphorylated on histidyl residues by the PTS. PRDs in transcriptional antiterminators and activators are PTS regulatory targets that are (de)phosphorylated in response to the availability of carbon sources [, , , , ]. The PRD domain comprises one and often two highly conserved histidines. It forms a compact bundle comprising five helices (alpha1-alpha5). The core of the PRD module consists of two pairs of antiparallel helices making an angle of ~60 degrees. The first pair contains the antiparallel helices alpha1 and alpha4, while the second pair contains alpha2 and alpha5. The third helix (alpha3) is oriented perpendicularly to alpha5 at the periphery of the bundle. The helices are connected by loops of varying length [, , ].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1TLV_A 1H99_A 3GWH_A 3UFE_B 3RIO_A 3NUF_A.
Probab=32.38 E-value=73 Score=19.53 Aligned_cols=29 Identities=17% Similarity=-0.013 Sum_probs=19.1
Q ss_pred chhhhhHHHHHHHHhcCCCCHHHHHHHHh
Q psy15544 13 PCVLYAVPGLSAFRIHSRLLFTDIDYLKE 41 (125)
Q Consensus 13 ~~v~~gl~~~i~~l~~l~ft~eEi~yL~~ 41 (125)
|-++..+-+.+...-++.++++|+.||.-
T Consensus 56 ~~~a~~~~~~l~~~~~i~~~~~Ei~yl~~ 84 (89)
T PF00874_consen 56 YQIAKEICERLEKRYGITLPDDEIAYLAL 84 (89)
T ss_dssp HHHHHHHHHHHHHHHTS-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 34445555566666789999999999864
No 64
>cd07069 NR_LBD_Lrh-1 The ligand binding domain of the liver receptor homolog-1, a member of nuclear receptor superfamily,. The ligand binding domain (LBD) of the liver receptor homolog-1 (LRH-1): LRH-1 belongs to nuclear hormone receptor superfamily, and is expressed mainly in the liver, intestine, exocrine pancreas, and ovary. Most nuclear receptors function as homodimer or heterodimers. However, LRH-1 binds DNA as a monomer, and is a regulator of bile-acid homeostasis, steroidogenesis, reverse cholesterol transport and the initial stages of embryonic development. Recently, phospholipids have been identified as potential ligand for LRH-1 and steroidogenic factor-1 (SF-1). Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, LRH-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=32.24 E-value=46 Score=26.22 Aligned_cols=31 Identities=13% Similarity=-0.122 Sum_probs=24.6
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCH
Q psy15544 17 YAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEE 49 (125)
Q Consensus 17 ~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~ 49 (125)
..+++..+.+..+++++.|...|+..+ .|++
T Consensus 129 ~~~~e~~~~lr~L~ld~~E~a~LKaiv--Lfnp 159 (241)
T cd07069 129 SHAQELVAKLRSLQFDQREFVCLKFLV--LFSL 159 (241)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH--HcCC
Confidence 345678888999999999999999875 4543
No 65
>cd06950 NR_LBD_Tlx_PNR_like The ligand binding domain of Tailless-like proteins, orphan nuclear receptors. The ligand binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like family: This family includes photoreceptor cell-specific nuclear receptor (PNR), Tailless (TLX), and related receptors. TLX is an orphan receptor that is expressed by neural stem/progenitor cells in the adult brain of the subventricular zone (SVZ) and the dentate gyrus (DG). It plays a key role in neural development by promoting cell cycle progression and preventing apoptosis in the developing brain. PNR is expressed only in the outer layer of retinal photoreceptor cells. It may be involved in the signaling pathway regulating photoreceptor differentiation and/or maintenance. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, TLX and PNR have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge
Probab=31.77 E-value=40 Score=25.70 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=23.4
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 17 YAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 17 ~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
..+++.++.+..++++++|...|+..+
T Consensus 110 ~~i~~~~~~~~~L~ld~~EyalLKai~ 136 (206)
T cd06950 110 RALQETLSRFRQLRVDATEFACLKAIV 136 (206)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 446788889999999999999999764
No 66
>cd06941 NR_LBD_DmE78_like The ligand binding domain of Drosophila ecdysone-induced protein 78, a member of the nuclear receptor superfamily. The ligand binding domain (LBD) of Drosophila ecdysone-induced protein 78 (E78) like: Drosophila ecdysone-induced protein 78 (E78) is a transcription factor belonging to the nuclear receptor superfamily. E78 is a product of the ecdysone-inducible gene found in an early late puff locus at position 78C during the onset of Drosophila metamorphosis. Two isoforms of E78, E78A and E78B, are expressed from two nested transcription units. An E78 orthologue from the Platyhelminth Schistosoma mansoni (SmE78) has also been identified. It is the first E78 orthologue known outside of the molting animals--the Ecdysozoa. SmE78 may be involved in transduction of an ecdysone signal in S. mansoni, consistent with its function in Drosophila. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, E78-like receptors ha
Probab=31.08 E-value=60 Score=24.24 Aligned_cols=29 Identities=14% Similarity=-0.025 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 15 VLYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 15 v~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+...+.+..+.+.++.++++|+..|+..+
T Consensus 84 ~~~~~~~~~~~l~~L~ld~~E~allkAi~ 112 (195)
T cd06941 84 FVKALFEFSDSFNSLGLSDTEVALFCAVV 112 (195)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 44667888999999999999999998754
No 67
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=28.98 E-value=34 Score=25.10 Aligned_cols=28 Identities=29% Similarity=0.194 Sum_probs=17.7
Q ss_pred CCHHHHHHHHhhCCCCCCHhHHHHHhcC
Q psy15544 31 LLFTDIDYLKETLPPCVEEEFYEFLRSV 58 (125)
Q Consensus 31 ft~eEi~yL~~~~~~~f~~~fl~~L~~~ 58 (125)
=|+|+|..+.+.+.=-|+++|.+||+.+
T Consensus 22 pd~e~I~~~Ee~L~i~lP~eyk~fL~~~ 49 (132)
T PF14567_consen 22 PDDEQIVEAEEQLGISLPEEYKEFLLEA 49 (132)
T ss_dssp --HHHHHHHHHHHT----HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHC
Confidence 3578888887654313899999999975
No 68
>cd06929 NR_LBD_F1 Ligand-binding domain of nuclear receptor family 1. Ligand-binding domain (LBD) of nuclear receptor (NR) family 1: This is one of the major subfamily of nuclear receptors, including thyroid receptor, retinoid acid receptor, ecdysone receptor, farnesoid X receptor, vitamin D receptor, and other related receptors. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=28.97 E-value=51 Score=23.68 Aligned_cols=29 Identities=7% Similarity=-0.043 Sum_probs=24.1
Q ss_pred hhhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 15 VLYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 15 v~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+...+.+.++.+.++++|++|...|+..+
T Consensus 84 ~~~~~~~~~~~l~~L~l~~~E~~llkai~ 112 (174)
T cd06929 84 FIEPLFEFAEKMNKLQLDDNEYALLTAIV 112 (174)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44566778899999999999999998764
No 69
>KOG4718|consensus
Probab=28.97 E-value=26 Score=28.13 Aligned_cols=38 Identities=11% Similarity=0.160 Sum_probs=29.0
Q ss_pred ccCCCCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 6 LSPPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 6 ~~p~~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
..|.+|.|+|+.-+..-=+.-..-.|++.|+++++..+
T Consensus 68 ~~~dgr~~lvyvNla~tp~SkmaT~f~~nEielfrkal 105 (235)
T KOG4718|consen 68 YPVDGREYLVYVNLAATPDSKMATGFTANEIELFRKAL 105 (235)
T ss_pred ecCCCceEEEEEecCCChhHHhcCCCCHHHHHHHHHHH
Confidence 45678889888777655555567899999999998643
No 70
>cd06953 NR_LBD_DHR4_like The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4. The ligand binding domain of Ecdysone-induced receptor DHR4: Ecdysone-induced orphan receptor DHR4 is a member of the nuclear receptor family. DHR4 is expressed during the early Drosophila larval development and is induced by ecdysone. DHR4 coordinates growth and maturation in Drosophila by mediating endocrine response to the attainment of proper body size during larval development. Mutations in DHR4 result in shorter larval development which translates into smaller and lighter flies. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, DHR4 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=28.65 E-value=52 Score=25.21 Aligned_cols=28 Identities=14% Similarity=-0.111 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+.+.+..+..++++++|...|+..+
T Consensus 114 ~~~i~~l~~~l~~L~ld~eEy~lLkAIv 141 (213)
T cd06953 114 VERLTYLLAKFRQLKVSNEEYVCLKVIN 141 (213)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3456778888899999999999998764
No 71
>cd06936 NR_LBD_Fxr The ligand binding domain of Farnesoid X receptor:a member of the nuclear receptor superfamily of ligand-activated transcription factors. The ligand binding domain (LBD) of Farnesoid X receptor: Farnesoid X receptor (FXR) is a member of the nuclear receptor superfamily of ligand-activated transcription factors. FXR is highly expressed in the liver, the intestine, the kidney, and the adrenals. FXR plays key roles in the regulation of bile acid, cholesterol, triglyceride, and glucose metabolism. Evidences show that it also regulates liver regeneration. Upon binding of ligands, such as bile acid, an endogenous ligand, FXRs bind to FXR response elements (FXREs) either as a monomer or as a heterodimer with retinoid X receptor (RXR), and regulate the expression of various genes involved in bile acid, lipid, and glucose metabolism. There are two FXR genes (FXRalpha and FXRbeta) in mammals. A single FXRalpha gene encodes four isoforms resulting from differential use of prom
Probab=27.45 E-value=63 Score=24.95 Aligned_cols=27 Identities=4% Similarity=-0.108 Sum_probs=21.8
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 17 YAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 17 ~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
..+.+..+.+..+++|++|...|+..+
T Consensus 117 ~~i~~~~~kl~~L~l~~~E~~lLkaIv 143 (221)
T cd06936 117 TPMFNFYKSMGELKMTQEEYALLTAIT 143 (221)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345566777899999999999998764
No 72
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=27.11 E-value=1.6e+02 Score=23.39 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcC---CCCCceEEEeeCCe
Q psy15544 19 VPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSV---TADQVTLYAIQEGS 72 (125)
Q Consensus 19 l~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~---rf~~~~v~a~~EG~ 72 (125)
++.++..|..-..|++|+...-+.+| +.+.+.++++.. +.. .++..+.+|-
T Consensus 46 m~~vl~~L~~~gvt~~~I~~~l~~ip--~~pgm~~~l~~l~~~~~~-~~~~IiSDaN 99 (234)
T PF06888_consen 46 MDRVLQLLHEQGVTPEDIRDALRSIP--IDPGMKELLRFLAKNQRG-FDLIIISDAN 99 (234)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHcCC--CCccHHHHHHHHHhcCCC-ceEEEEeCCc
Confidence 57777788777799999865544445 666666666544 233 5566666554
No 73
>PF14702 hGDE_central: central domain of human glycogen debranching enzyme
Probab=27.10 E-value=32 Score=27.77 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.8
Q ss_pred CCCcchhhhhHHHHHHHHhcCCCCH
Q psy15544 9 PIRSPCVLYAVPGLSAFRIHSRLLF 33 (125)
Q Consensus 9 ~~~~~~v~~gl~~~i~~l~~l~ft~ 33 (125)
|+.+.+|.||||..+..|+.++...
T Consensus 211 P~~G~LvYcGLqG~~s~L~~I~~~N 235 (260)
T PF14702_consen 211 PNYGPLVYCGLQGWISVLREIRFSN 235 (260)
T ss_pred CCCCccceeehHhHHHHHHhhcccc
Confidence 6788899999999999999888763
No 74
>cd07068 NR_LBD_ER_like The ligand binding domain of estrogen receptor and estrogen receptor-related receptors. The ligand binding domain of estrogen receptor (ER) and estrogen receptor-related receptors (ERRs): Estrogen receptors are a group of receptors which are activated by the hormone estrogen. Estrogen regulates many physiological processes including reproduction, bone integrity, cardiovascular health, and behavior. The main mechanism of action of the estrogen receptor is as a transcription factor by binding to the estrogen response element of target genes upon activation by estrogen and then recruiting coactivator proteins which are responsible for the transcription of target genes. Additionally some ERs may associate with other membrane proteins and can be rapidly activated by exposure of cells to estrogen. ERRs are closely related to the estrogen receptor (ER) family. But, it lacks the ability to bind estrogen. ERRs can interfere with the classic ER-mediated estrogen signalin
Probab=27.06 E-value=62 Score=24.76 Aligned_cols=27 Identities=15% Similarity=-0.084 Sum_probs=22.7
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 17 YAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 17 ~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
..+.+.+..+.++++|++|...|+..+
T Consensus 111 ~~~~~~~~~l~~L~ld~~E~~lLkaIi 137 (221)
T cd07068 111 DMLLQLVRRFRELGLQREEYVCLKAII 137 (221)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345677888999999999999999764
No 75
>cd06944 NR_LBD_Ftz-F1_like The ligand binding domain of FTZ-F1 like nuclear receptors. The ligand binding domain of FTZ-F1 like nuclear receptors: This nuclear receptor family includes at least three subgroups of receptors that function in embryo development and differentiation, and other processes. FTZ-F1 interacts with the cis-acting DNA motif of ftz gene, which required at several stages of development. Particularly, FTZ-F1 genes are strongly linked to steroid biosynthesis and sex-determination; LRH-1 is a regulator of bile-acid homeostasis, steroidogenesis, reverse cholesterol transport and the initial stages of embryonic development. SF-1 is an essential regulator of endocrine development and function and is considered a master regulator of reproduction; SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been identified as potential ligand for LRH-1 and steroidogenic factor-1 (SF-1). However, the ligand for FTZ-F1 has not
Probab=26.24 E-value=67 Score=25.03 Aligned_cols=28 Identities=11% Similarity=-0.092 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+.+.+..+..++++++|...|+..+
T Consensus 126 ~~~i~~~~~~l~~L~ld~~E~~lLkaIi 153 (237)
T cd06944 126 VDRAQELVNKLRELQFDRQEFVCLKFLI 153 (237)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4457788889999999999999999875
No 76
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=25.85 E-value=89 Score=20.78 Aligned_cols=21 Identities=10% Similarity=-0.118 Sum_probs=17.2
Q ss_pred HHHHHhcCCCCHHHHHHHHhh
Q psy15544 22 LSAFRIHSRLLFTDIDYLKET 42 (125)
Q Consensus 22 ~i~~l~~l~ft~eEi~yL~~~ 42 (125)
-|..|+.+.|+++|++.+.+.
T Consensus 8 ~lA~La~L~l~eee~~~~~~~ 28 (93)
T TIGR00135 8 HLAKLARLELSEEEAESFAGD 28 (93)
T ss_pred HHHHHhCCCCCHHHHHHHHHH
Confidence 367889999999999877654
No 77
>cd06952 NR_LBD_TR2_like The ligand binding domain of the orphan nuclear receptors TR4 and TR2. The ligand binding domain of the TR4 and TR2 (human testicular receptor 4 and 2): TR4 and TR2 are orphan nuclear receptors. Several isoforms of TR4 and TR2 have been isolated in various tissues. TR2 is abundantly expressed in the androgen-sensitive prostate. TR4 transcripts are expressed in many tissues, including central nervous system, adrenal gland, spleen, thyroid gland, and prostate. The expression of TR2 is negatively regulated by androgen, retinoids, and radiation. The expression of both mouse TR2 and TR4 is up-regulated by neurocytokine ciliary neurotrophic factor (CNTF) in mouse. It has shown that human TR2 binds to a wide spectrum of natural hormone response elements (HREs) with distinct affinities suggesting that TR2 may cross-talk with other gene expression regulation systems. The genes responding to TR2 or TR4 include genes that are regulated by retinoic acid receptor, vitamin D
Probab=25.23 E-value=56 Score=24.95 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHhhCCCCCCH
Q psy15544 19 VPGLSAFRIHSRLLFTDIDYLKETLPPCVEE 49 (125)
Q Consensus 19 l~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~ 49 (125)
+++.++.+.++++++.|..+|+..+ +|++
T Consensus 115 l~~~~~~l~~L~ld~~E~~~Lkaii--Lf~~ 143 (222)
T cd06952 115 LQEFVNSMQKLDVDDHEYAYLKAIV--LFSP 143 (222)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH--HhCC
Confidence 4567888999999999999999875 4543
No 78
>cd06946 NR_LBD_ERR The ligand binding domain of estrogen receptor-related nuclear receptors. The ligand binding domain of estrogen receptor-related receptors (ERRs): The family of estrogen receptor-related receptors (ERRs), a subfamily of nuclear receptors, is closely related to the estrogen receptor (ER) family, but it lacks the ability to bind estrogen. ERRs can interfere with the classic ER-mediated estrogen signaling pathway, positively or negatively. ERRs share target genes, co-regulators and promoters with the estrogen receptor (ER) family. There are three subtypes of ERRs: alpha, beta and gamma. ERRs bind at least two types of DNA sequence, the estrogen response element and another site, originally characterized as SF-1 (steroidogenic factor 1) response element. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, ERR has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-
Probab=25.01 E-value=72 Score=24.35 Aligned_cols=27 Identities=22% Similarity=-0.033 Sum_probs=22.3
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 17 YAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 17 ~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
..+.+.+..+.++++|++|...|+..+
T Consensus 111 ~~~~~~~~~l~~L~l~~~E~~lLkai~ 137 (221)
T cd06946 111 SACLQLVRRLQRLRLEKEEYVLLKALA 137 (221)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 335567888899999999999999875
No 79
>cd07070 NR_LBD_SF-1 The ligand binding domain of nuclear receptor steroidogenic factor 1, a member of nuclear receptor superfamily. The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=23.95 E-value=67 Score=25.10 Aligned_cols=28 Identities=14% Similarity=-0.113 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhhCCCCCCH
Q psy15544 20 PGLSAFRIHSRLLFTDIDYLKETLPPCVEE 49 (125)
Q Consensus 20 ~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~ 49 (125)
++.+..+..++++++|...|+..+ +|++
T Consensus 130 ~e~~~kl~~L~ld~~Ey~~LkaIi--Lfnp 157 (237)
T cd07070 130 QELVLQLHALQLDRQEFVCLKFLI--LFSL 157 (237)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHH--hcCC
Confidence 467788899999999999999875 4543
No 80
>PF14894 Lsm_C: Lsm C-terminal; PDB: 1M5Q_1.
Probab=23.83 E-value=74 Score=20.74 Aligned_cols=42 Identities=26% Similarity=0.240 Sum_probs=23.0
Q ss_pred HhHHHHH-hcCCCCCceEEEeeCCeeecCCe-e-----EEEEEecchhH
Q psy15544 49 EEFYEFL-RSVTADQVTLYAIQEGSVVFPRV-P-----LLRVEGPLIIV 90 (125)
Q Consensus 49 ~~fl~~L-~~~rf~~~~v~a~~EG~v~~p~e-p-----~i~I~Gp~~e~ 90 (125)
.+|-++| +...+.|+.|...+|-.++.-.+ - -++=+||+.+.
T Consensus 2 ~eFa~~~~r~l~l~p~~VK~~eea~vV~V~drirVse~GVEGsGPlAer 50 (64)
T PF14894_consen 2 REFAEYLERELNLFPGMVKVYEEANVVVVMDRIRVSENGVEGSGPLAER 50 (64)
T ss_dssp HHHHHHHHH---HSTTTEEEETTTTEEEETTTEEEETTEEE--SHHHHH
T ss_pred hHHHHHHHHhcccCccceEEeccCCEEEEeeeEEEeccccccCChHHHH
Confidence 3566666 44566779999998766543332 1 13345677765
No 81
>cd06931 NR_LBD_HNF4_like The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes. The ligand binding domain of hepatocyte nuclear factor 4 (HNF4) like proteins: HNF4 is a member of the nuclear receptor superfamily. HNF4 plays a key role in establishing and maintenance of hepatocyte differentiation in the liver. It is also expressed in gut, kidney, and pancreatic beta cells. HNF4 was originally classified as an orphan receptor, but later it is found that HNF4 binds with very high affinity to a variety of fatty acids. However, unlike other nuclear receptors, the ligands do not act as a molecular switch for HNF4. They seem to constantly bind to the receptor, which is constitutively active as a transcription activator. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, HNF4 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal lig
Probab=23.64 E-value=84 Score=23.85 Aligned_cols=25 Identities=12% Similarity=-0.041 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 19 VPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 19 l~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+++.++.+..+++|++|+..|+..+
T Consensus 118 ~~~~~~~l~~L~l~~~E~~lLkaii 142 (222)
T cd06931 118 LDELVLPLRDLNIDDNEYACLKAIV 142 (222)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4678888999999999999999775
No 82
>cd06943 NR_LBD_RXR_like The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily. The ligand binding domain of the retinoid X receptor (RXR) and Ultraspiracle (USP): This family includes two evolutionary related nuclear receptors: retinoid X receptor (RXR) and Ultraspiracle (USP). RXR is a nuclear receptor in mammalian and USP is its counterpart in invertebrates. The native ligand of retinoid X receptor is 9-cis retinoic acid (RA). RXR functions as a DNA binding partner by forming heterodimers with other nuclear receptors including CAR, FXR, LXR, PPAR, PXR, RAR, TR, and VDR. RXRs can play different roles in these heterodimers. It acts either as a structural component of the heterodimer complex, required for DNA binding but not acting as a receptor or as both a structural and a functional component of the heterodimer, allowing 9-cis RA to signal through the corresponding heterodimer. In addition, RXR can also form homodimers, func
Probab=23.61 E-value=73 Score=23.87 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 19 VPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 19 l~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+++.++.+.++++|++|...|+..+
T Consensus 117 ~~~~~~~l~~L~ld~~E~~lLkaI~ 141 (207)
T cd06943 117 LTELVVKMRDLKMDRTELGCLRAII 141 (207)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5678888999999999999999764
No 83
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=23.37 E-value=16 Score=26.90 Aligned_cols=42 Identities=7% Similarity=0.011 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVT 59 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~r 59 (125)
-..+++.++.|+. .|+.++-+-|+++|. .|.+++.++|.+-+
T Consensus 84 ~~~~~~~l~~l~~-~~~~~~Y~Ll~~NCN-hFs~~l~~~L~g~~ 125 (151)
T PF05903_consen 84 EEEFEEILRSLSR-EFTGDSYHLLNRNCN-HFSDALCQFLTGKP 125 (151)
T ss_dssp HHHHHHHHHHHHT-T-SGGG-BTTTBSHH-HHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHh-hccCCcchhhhhhhh-HHHHHHHHHhCCCC
Confidence 3456777778887 789999988899987 79999999998643
No 84
>cd06935 NR_LBD_TR The ligand binding domain of thyroid hormone receptor, a members of a superfamily of nuclear receptors. The ligand binding domain (LBD) of thyroid hormone receptors: Thyroid hormone receptors are members of a superfamily of nuclear receptors. Thyroid hormone receptors (TR) mediate the actions of thyroid hormones, which play critical roles in growth, development, and homeostasis in mammals. They regulate overall metabolic rate, cholesterol and triglyceride levels, and heart rate, and affect mood. TRs are expressed from two separate genes (alpha and beta) in human and each gene generates two isoforms of the receptor through differential promoter usage or splicing. TRalpha functions in the heart to regulate heart rate and rhythm and TRbeta is active in the liver and other tissues. The unliganded TRs function as transcription repressors, by binding to thyroid hormone response elements (TRE) predominantly as homodimers, or as heterodimers with retinoid X-receptors (RXR), a
Probab=23.05 E-value=83 Score=24.69 Aligned_cols=28 Identities=21% Similarity=0.061 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+.+..+.+..++++++|...|+..+
T Consensus 135 ~~~i~~f~~~l~~L~ld~~E~alLkAiv 162 (243)
T cd06935 135 SDAIFDLGVSLSSFNLDDTEVALLQAVL 162 (243)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3456677888899999999999998764
No 85
>cd06949 NR_LBD_ER Ligand binding domain of Estrogen receptor, which are activated by the hormone 17beta-estradiol (estrogen). The ligand binding domain (LBD) of Estrogen receptor (ER): Estrogen receptor, a member of nuclear receptor superfamily, is activated by the hormone estrogen. Estrogen regulates many physiological processes including reproduction, bone integrity, cardiovascular health, and behavior. The main mechanism of action of the estrogen receptor is as a transcription factor by binding to the estrogen response element of target genes upon activation by estrogen and then recruiting coactivator proteins which are responsible for the transcription of target genes. Additionally some ERs may associate with other membrane proteins and can be rapidly activated by exposure of cells to estrogen. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, ER has a central well conserved DNA binding domain (DBD), a variable N-terminal doma
Probab=22.81 E-value=80 Score=24.64 Aligned_cols=27 Identities=11% Similarity=-0.053 Sum_probs=22.5
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 17 YAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 17 ~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
..+.+.++.+..++++++|...|+..+
T Consensus 117 ~~~~~~~~~l~~L~ld~~EyalLKAIv 143 (235)
T cd06949 117 DMLLATASRFRELQLQREEYVCLKAII 143 (235)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 445677888899999999999999875
No 86
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=22.64 E-value=2e+02 Score=21.30 Aligned_cols=41 Identities=5% Similarity=-0.080 Sum_probs=32.0
Q ss_pred hhhhhHHHHHHHHhcCCCCHHHHH-HHHhhCCCCCCHhHHHHHh
Q psy15544 14 CVLYAVPGLSAFRIHSRLLFTDID-YLKETLPPCVEEEFYEFLR 56 (125)
Q Consensus 14 ~v~~gl~~~i~~l~~l~ft~eEi~-yL~~~~~~~f~~~fl~~L~ 56 (125)
.|-.++-+.|+.|..=-.|+||+. -+.+.. -++||++.||-
T Consensus 88 ~i~~~vi~~I~el~~eG~s~eei~~ki~~e~--kl~pd~i~yi~ 129 (131)
T PF08004_consen 88 EIPESVIERIKELKSEGKSEEEIAEKISRET--KLSPDMIKYIL 129 (131)
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh--cCCHHHHHHHh
Confidence 445777788999998899999976 455553 59999999985
No 87
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=22.01 E-value=1.1e+02 Score=18.48 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=6.4
Q ss_pred CCCHHHHHHH
Q psy15544 30 RLLFTDIDYL 39 (125)
Q Consensus 30 ~ft~eEi~yL 39 (125)
.||+||.+|.
T Consensus 35 ~Ft~e~A~YA 44 (48)
T PF07553_consen 35 GFTEEEAQYA 44 (48)
T ss_pred CCCHHHHHHH
Confidence 5666666664
No 88
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=21.53 E-value=76 Score=19.37 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=19.9
Q ss_pred CCHHHHHHHHhhCCCCCCHhHHHHHhcC
Q psy15544 31 LLFTDIDYLKETLPPCVEEEFYEFLRSV 58 (125)
Q Consensus 31 ft~eEi~yL~~~~~~~f~~~fl~~L~~~ 58 (125)
.|++||.--+..+-.-++|+.+++|+.=
T Consensus 15 MS~eEI~~er~eL~~~LdP~li~~L~~R 42 (49)
T PF08621_consen 15 MSPEEIEEEREELLESLDPKLIEFLKKR 42 (49)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 5888887765432125899999999753
No 89
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=21.18 E-value=1.3e+02 Score=18.48 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=15.4
Q ss_pred CHhHHHHHhcCCCCCce-EEEe
Q psy15544 48 EEEFYEFLRSVTADQVT-LYAI 68 (125)
Q Consensus 48 ~~~fl~~L~~~rf~~~~-v~a~ 68 (125)
+++++.+|.++.+.|+. |..+
T Consensus 21 d~~~~~~L~~lGl~~G~~i~v~ 42 (74)
T PF04023_consen 21 DPELLRRLADLGLTPGSEITVI 42 (74)
T ss_dssp SHHHHHHHHHCT-STTEEEEEE
T ss_pred CHHHHHHHHHCCCCCCCEEEEE
Confidence 47889999999999886 4444
Done!