Query psy15544
Match_columns 125
No_of_seqs 108 out of 1071
Neff 5.7
Searched_HMMs 29240
Date Sat Aug 17 00:01:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hl7_A Naprtase, nicotinate ph 100.0 9.8E-32 3.3E-36 227.4 7.8 109 7-119 48-172 (446)
2 3os4_A Naprtase, nicotinate ph 100.0 4.6E-30 1.6E-34 215.2 11.4 103 8-118 44-161 (407)
3 2f7f_A Nicotinate phosphoribos 100.0 1.3E-29 4.3E-34 216.6 11.7 109 8-119 45-153 (494)
4 3dhf_A Nicotinamide phosphorib 100.0 2E-29 6.7E-34 215.1 9.8 107 10-118 53-172 (484)
5 1vlp_A Naprtase, nicotinate ph 100.0 2E-28 6.9E-33 206.8 11.9 102 12-115 56-180 (441)
6 2im5_A Nicotinate phosphoribos 99.9 9.8E-27 3.4E-31 194.1 12.1 96 12-114 41-155 (394)
7 1yir_A Naprtase 2, nicotinate 99.9 1.3E-26 4.4E-31 194.1 11.4 97 14-119 53-166 (408)
8 1ybe_A Naprtase, nicotinate ph 99.9 1.1E-26 3.7E-31 196.6 11.0 99 10-118 67-193 (449)
9 2i14_A Nicotinate-nucleotide p 99.7 2.1E-17 7.1E-22 137.7 6.4 81 7-119 53-133 (395)
10 2i1o_A Nicotinate phosphoribos 99.6 8.2E-16 2.8E-20 128.3 7.7 76 12-119 56-137 (398)
11 2b7n_A Probable nicotinate-nuc 99.5 2.2E-14 7.4E-19 114.1 8.6 77 11-119 38-115 (273)
12 2jbm_A Nicotinate-nucleotide p 99.5 4.9E-14 1.7E-18 113.6 8.0 57 63-119 71-128 (299)
13 3c2e_A Nicotinate-nucleotide p 99.4 1.2E-13 4.3E-18 111.0 7.4 57 63-119 67-130 (294)
14 1qap_A Quinolinic acid phospho 99.2 6.9E-11 2.4E-15 95.2 7.7 57 63-119 85-142 (296)
15 3paj_A Nicotinate-nucleotide p 99.1 4.1E-10 1.4E-14 91.9 8.5 57 63-119 108-165 (320)
16 3gnn_A Nicotinate-nucleotide p 99.0 4.6E-10 1.6E-14 90.8 7.8 57 63-119 86-143 (298)
17 1o4u_A Type II quinolic acid p 98.7 3.1E-08 1.1E-12 79.5 7.9 57 63-119 71-128 (285)
18 3tqv_A Nicotinate-nucleotide p 98.6 7.7E-08 2.6E-12 77.4 7.8 56 64-119 76-132 (287)
19 1x1o_A Nicotinate-nucleotide p 98.6 1.7E-07 5.9E-12 75.1 7.8 58 63-120 72-130 (286)
20 3l0g_A Nicotinate-nucleotide p 98.5 3.5E-07 1.2E-11 74.1 7.6 57 63-119 84-141 (300)
21 1qpo_A Quinolinate acid phosph 98.4 6.5E-07 2.2E-11 71.7 8.3 57 63-119 71-128 (284)
22 1g6u_A Domain swapped dimer; d 52.0 18 0.00061 20.9 3.3 27 16-42 2-28 (48)
23 2prv_A Uncharacterized protein 40.9 34 0.0012 23.5 4.1 42 17-58 5-51 (153)
24 2icg_A LIN2918 protein; hypoth 39.9 22 0.00075 24.6 3.0 30 30-59 26-55 (160)
25 2dgy_A MGC11102 protein; EIF-1 38.3 34 0.0012 23.3 3.7 32 28-61 76-107 (111)
26 2pag_A Hypothetical protein; n 36.2 24 0.00084 24.3 2.7 28 31-58 22-49 (135)
27 3ufe_A Transcriptional antiter 31.8 47 0.0016 20.9 3.4 28 15-42 78-105 (111)
28 3d5p_A Putative glucan synthes 31.5 38 0.0013 23.1 3.1 29 29-57 13-41 (144)
29 3mva_O Transcription terminati 30.1 26 0.00089 27.4 2.2 47 19-65 51-103 (343)
30 3kfu_G Glutamyl-tRNA(Gln) amid 29.9 70 0.0024 20.6 4.0 31 22-57 13-43 (92)
31 4eiu_A Uncharacterized hypothe 29.6 28 0.00095 27.2 2.3 27 62-88 49-80 (249)
32 4doo_A Chalcone-flavanone isom 28.9 1.1E+02 0.0037 22.2 5.4 43 57-99 137-184 (205)
33 1h8b_A ACT-EF34, alpha-actinin 26.8 33 0.0011 21.2 1.9 28 8-43 20-47 (75)
34 3l0l_A Nuclear receptor ROR-ga 25.8 45 0.0016 24.7 2.8 28 16-43 138-165 (248)
35 1nq7_A Nuclear receptor ROR-be 25.8 46 0.0016 24.5 2.8 28 16-43 132-159 (244)
36 2veb_A Protoglobin; hemoprotei 25.2 19 0.00066 27.0 0.6 32 27-58 30-67 (195)
37 3b0t_A Vitamin D3 receptor; nu 25.1 42 0.0014 24.8 2.5 28 16-43 141-168 (254)
38 3cqv_A Nuclear receptor subfam 24.8 33 0.0011 24.4 1.8 28 16-43 103-130 (199)
39 1n83_A Nuclear receptor ROR-al 23.7 52 0.0018 24.8 2.8 28 16-43 147-174 (270)
40 2o4j_A Vitamin D3 receptor; nu 23.2 48 0.0016 25.3 2.5 28 16-43 144-171 (292)
41 3hn5_A Putative exported prote 22.3 40 0.0014 25.7 1.9 28 61-88 45-78 (215)
42 1eyq_A Chalcone-flavonone isom 22.2 1E+02 0.0036 23.0 4.2 47 51-97 135-192 (222)
43 3vi8_A Peroxisome proliferator 22.2 57 0.002 24.7 2.8 28 16-43 160-187 (273)
44 1xvp_B Orphan nuclear receptor 22.2 47 0.0016 24.4 2.3 27 17-43 138-164 (246)
45 1fcy_A RAR-gamma-1, retinoic a 22.1 53 0.0018 23.9 2.5 27 17-43 128-154 (236)
46 3ltx_A Estrogen receptor; cons 22.0 35 0.0012 25.2 1.5 28 16-43 120-147 (243)
47 1osh_A BIle acid receptor; nuc 21.9 58 0.002 23.6 2.7 28 16-43 122-149 (232)
48 4fxt_A Uncharacterized protein 21.4 52 0.0018 24.7 2.4 28 61-88 41-73 (202)
49 3h0l_C Glutamyl-tRNA(Gln) amid 21.2 83 0.0029 20.3 3.1 21 22-42 9-29 (94)
50 1ymt_A Steroidogenic factor 1; 21.1 50 0.0017 24.2 2.2 27 17-43 134-160 (246)
51 2hc4_A Vitamin D receptor; alp 20.8 56 0.0019 25.1 2.5 28 16-43 187-214 (302)
52 1h99_A Transcription antitermi 20.8 99 0.0034 21.5 3.7 23 19-41 193-215 (224)
53 3plz_A FTZ-F1 related protein; 20.7 58 0.002 24.3 2.5 27 17-43 145-171 (257)
54 3ilz_A Thyroid hormone recepto 20.5 51 0.0018 24.7 2.2 28 16-43 153-180 (267)
55 2p1t_A Retinoic acid receptor 20.1 44 0.0015 24.3 1.7 25 19-43 128-152 (240)
56 3oll_A Estrogen receptor beta; 20.0 41 0.0014 24.6 1.5 27 17-43 118-144 (240)
No 1
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}
Probab=99.97 E-value=9.8e-32 Score=227.43 Aligned_cols=109 Identities=16% Similarity=0.039 Sum_probs=96.9
Q ss_pred cCCCCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCce-EEEeeCCeeecCCeeEEEEEe
Q psy15544 7 SPPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVT-LYAIQEGSVVFPRVPLLRVEG 85 (125)
Q Consensus 7 ~p~~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~-v~a~~EG~v~~p~ep~i~I~G 85 (125)
.|++++|+ +||+++|++|++++||+||++||++..+ +|+++|++||++|||+ ++ +++++||++++|+||+|+|+|
T Consensus 48 ~p~~~~~~--agL~~~l~~L~~l~ft~eei~yL~~~~~-~~~~~fl~yL~~frf~-~~~~~av~eg~~~~~~ep~l~VeG 123 (446)
T 4hl7_A 48 EEDASGLL--DAIRQEIAHLGTLRFSDADIHYLTQHAP-HLKATFLQSLRYFHFV-PQEQVEMGIVKQGGKQQLRISIRG 123 (446)
T ss_dssp CTTTHHHH--HHHHHHHHHGGGCCCCHHHHHHHHHHCT-TSCHHHHHHHTTCCCC-HHHHEEEEEECC----EEEEEEEE
T ss_pred CCCchhHH--HHHHHHHHHHHhCCCCHHHHHHHHhCCC-CCCHHHHHHHHhCCCC-CeEEEEEeccccCcCCEEEEEEEE
Confidence 35455663 9999999999999999999999998744 8999999999999999 55 999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhH------HHHH---------HHHHHhHHhhc
Q psy15544 86 PLIIVQLLETTLLTLVNFA------SWHN---------DILSTSMISSQ 119 (125)
Q Consensus 86 p~~e~~l~Et~lLaiIs~~------s~iA---------T~aa~~~~aa~ 119 (125)
||.++||||||||++||++ |+|| |||+||+.||+
T Consensus 124 p~~e~~L~Et~lL~iin~~~~~~~~s~ia~~~~~~~~~tKa~rl~~aA~ 172 (446)
T 4hl7_A 124 SWRDTILYETLVMAIVSEVRSRQRWAEVPADLPLKVLKTKLDQLKAEIE 172 (446)
T ss_dssp EHHHHTTHHHHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred EHHHHhHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999997 8997 89999999997
No 2
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=99.96 E-value=4.6e-30 Score=215.18 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=95.2
Q ss_pred CCCCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEecc
Q psy15544 8 PPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPL 87 (125)
Q Consensus 8 p~~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp~ 87 (125)
||.++ .+++||+++|++|++++||+||++||++. + +|+++|++||++|||+ +++++++| +||||+|+|+|||
T Consensus 44 ~~~~~-~~~agl~~~l~~l~~l~ft~~ei~yL~~~-~-~~~~~fl~yL~~frf~-~~~~~~~e----~~~ep~l~I~Gp~ 115 (407)
T 3os4_A 44 DELLG-VYADEIRHQVTLMGQLALTSDEFIYLSSL-P-FFQDDYLHWLRDFRFK-PEQVSVAV----HDGKLDIRIAGLW 115 (407)
T ss_dssp SCCCG-GGHHHHHHHHHHHTTCCCCHHHHHHHHTS-S-SCCHHHHHHHHHCCCC-GGGEEEEE----ETTEEEEEEEEEH
T ss_pred CCchh-hHHHHHHHHHHHHHhCCCCHHHHHHHHhC-C-CCCHHHHHHHHhCCCC-ceEEEEec----CCCcEEEEEEEEH
Confidence 44444 55699999999999999999999999964 7 9999999999999999 78999998 8999999999999
Q ss_pred hhHHHHHHHHHHHHhh---H------------HHHHHHHHHhHHhh
Q psy15544 88 IIVQLLETTLLTLVNF---A------------SWHNDILSTSMISS 118 (125)
Q Consensus 88 ~e~~l~Et~lLaiIs~---~------------s~iAT~aa~~~~aa 118 (125)
.++||||||||++||+ + |++||||+||+.||
T Consensus 116 ~e~~l~Et~lL~iin~~~~~~~~~~~~~~~~~s~iatKa~r~~~aa 161 (407)
T 3os4_A 116 CEVIMWEVPLLAVISEIVHRRRSTQVTTDQAVQQLRTKLEQFNALS 161 (407)
T ss_dssp HHHTTSHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999997 5 99999999999987
No 3
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1
Probab=99.96 E-value=1.3e-29 Score=216.61 Aligned_cols=109 Identities=28% Similarity=0.407 Sum_probs=104.6
Q ss_pred CCCCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEecc
Q psy15544 8 PPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPL 87 (125)
Q Consensus 8 p~~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp~ 87 (125)
|.+++|.|++||+++++.|++++||++|++||++. + +|+++|++||++|||+ ++|++++||++++||+|+++|+|||
T Consensus 45 p~~~~~~v~aGl~~~l~~l~~l~ft~~ei~yl~~~-~-~f~~~fl~~L~~~~f~-~~i~av~EG~~v~~g~pll~v~Gp~ 121 (494)
T 2f7f_A 45 PFNHGYAIFAGLERLVNYLENLTFTESDIAYLREV-E-EYPEDFLTYLANFEFK-CTVRSALEGDLVFNNEPLIQIEGPL 121 (494)
T ss_dssp GGGCSCEECCCHHHHHHHHHTCCCCHHHHHHHHHT-S-CCCHHHHHHHHTCCCC-CEEEECCTTCEECTTSCSEEEEEEH
T ss_pred CCCCceEehHhHHHHHHHHHhCCCCHHHHHHHHhc-C-CCCHHHHHHHHhCCCC-ceEEEecCCCcccCCCEEEEEEECH
Confidence 55678999999999999999999999999999876 6 8999999999999999 7999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 88 IIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 88 ~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
.+++++||++|++|||+|+|||+|+|++.+|+
T Consensus 122 ~~~~~~Et~lLnil~~~S~IAT~a~r~v~aa~ 153 (494)
T 2f7f_A 122 AQCQLVETALLNMVNFQTLIATKAARIKSVIG 153 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999986
No 4
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A*
Probab=99.96 E-value=2e-29 Score=215.12 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=99.5
Q ss_pred CCcchhhhhHHHHH-HHHhcCCCCHHHHHHHHhhCC-----CCCCHhHHHHHhc---CCCCCceEEEeeCCeeecCCeeE
Q psy15544 10 IRSPCVLYAVPGLS-AFRIHSRLLFTDIDYLKETLP-----PCVEEEFYEFLRS---VTADQVTLYAIQEGSVVFPRVPL 80 (125)
Q Consensus 10 ~~~~~v~~gl~~~i-~~l~~l~ft~eEi~yL~~~~~-----~~f~~~fl~~L~~---~rf~~~~v~a~~EG~v~~p~ep~ 80 (125)
+++|.|++||++.| ++|.+++||++||+||++.|+ .+|+++|++||++ ++|+ ++|+|+|||++|||++|+
T Consensus 53 ~~~~~v~~GL~~~l~~~l~~~~ft~~di~~l~~~~~~~~g~~~f~~~f~~~L~~~~~~~~~-~~I~A~pEGt~v~~~~Pl 131 (484)
T 3dhf_A 53 KYEETVFYGLQYILNKYLKGKVVTKEKIQEAKDVYKEHFQDDVFNEKGWNYILEKYDGHLP-IEIKAVPEGFVIPRGNVL 131 (484)
T ss_dssp -CCEEECCCHHHHHHHHTSSCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTTCCC-EEEEECCTTCEEETTSCC
T ss_pred cCCeeeeHHHHHHHHHHHHhCCCCHHHHHHHHHhhhhhcccCcCCHHHHHHHHhccCCCCc-eEEEEECCCccccCCCcE
Confidence 45899999999999 899999999999999998751 3799999999999 9996 999999999999999999
Q ss_pred EEEEecch----hHHHHHHHHHHHHhhHHHHHHHHHHhHHhh
Q psy15544 81 LRVEGPLI----IVQLLETTLLTLVNFASWHNDILSTSMISS 118 (125)
Q Consensus 81 i~I~Gp~~----e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa 118 (125)
++|+||.. +++++||+||+ |||+|+|||+|+||++++
T Consensus 132 l~Ve~~~~~f~w~~~llET~Ll~-l~~~s~vAT~A~r~~~~~ 172 (484)
T 3dhf_A 132 FTVENTDPECYWLTNWIETILVQ-SWYPITVATNSREQKKIL 172 (484)
T ss_dssp EEEEESSGGGTTHHHHTHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCcchhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 99999966 88999999999 999999999999999973
No 5
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2
Probab=99.95 E-value=2e-28 Score=206.82 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=97.0
Q ss_pred cc--hhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHH--hcCCCCC---ceEEEeeC-CeeecCCeeEEEE
Q psy15544 12 SP--CVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFL--RSVTADQ---VTLYAIQE-GSVVFPRVPLLRV 83 (125)
Q Consensus 12 ~~--~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L--~~~rf~~---~~v~a~~E-G~v~~p~ep~i~I 83 (125)
+| .|++||+++|+.|++++||+||++||++.++ +|+++|++|| ++|||++ .+|+++|| |++++ ++|+|+|
T Consensus 56 ~~~~~v~~GL~~~l~~l~~l~ft~eei~yL~~~~~-~f~~~fl~~L~~~~f~~~~~~~v~I~a~~EgGt~v~-~ep~l~I 133 (441)
T 1vlp_A 56 TFNKEAINWLKEQFSYLGNLRFTEEEIEYLKQEIP-YLPSAYIKYISSSNYKLHPEEQISFTSEEIEGKPTH-YKLKILV 133 (441)
T ss_dssp CBCHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCT-TSCHHHHHHHHSTTCCCCHHHHEEEEEEEETTEEEE-EEEEEEE
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHhhcC-CCCHHHHHHHHhcccCcCCCceEEEEEecCCCceEC-CEEEEEE
Confidence 67 8999999999999999999999999977767 9999999999 9999994 39999999 99999 9999999
Q ss_pred EecchhHHHHHHHHHHHHh---hH------------HHHHHHHHHhH
Q psy15544 84 EGPLIIVQLLETTLLTLVN---FA------------SWHNDILSTSM 115 (125)
Q Consensus 84 ~Gp~~e~~l~Et~lLaiIs---~~------------s~iAT~aa~~~ 115 (125)
+|||.++++||||||++|| |+ |.+||||+|++
T Consensus 134 eGp~~~~~llET~lL~ii~e~~~~~v~t~~~~~~~~~~iatka~r~~ 180 (441)
T 1vlp_A 134 SGSWKDTILYEIPLLSLISEAYFKFVDIDWDYENQLEQAEKKAETLF 180 (441)
T ss_dssp EEEHHHHTTSHHHHHHHHHHHHHHHTCCCCCCTTHHHHHHHHHHHHH
T ss_pred EEcHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 88 99999999987
No 6
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis}
Probab=99.94 E-value=9.8e-27 Score=194.07 Aligned_cols=96 Identities=21% Similarity=0.221 Sum_probs=89.1
Q ss_pred cc-h-hhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCC--ceEEEeeCCeeecCCeeEEEEEecc
Q psy15544 12 SP-C-VLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQ--VTLYAIQEGSVVFPRVPLLRVEGPL 87 (125)
Q Consensus 12 ~~-~-v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~--~~v~a~~EG~v~~p~ep~i~I~Gp~ 87 (125)
+| . |++||+++|++|++++||++|++||++.++ +|+++|++||++|||++ .+|+++||| +|+|+|+|||
T Consensus 41 ~~~~~v~~gL~~~l~~l~~~~ft~~ei~yL~~~~~-~f~~~fl~~L~~~r~~~~~v~I~a~~EG------ep~l~I~Gp~ 113 (394)
T 2im5_A 41 GFTEEFAELVRGEIRAMAALSLTRDEKEFLQRELP-YLPPIYIDFLDGFRFDPEEVTVSIDAQG------HLDIRAQGLL 113 (394)
T ss_dssp CCCHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCT-TSCHHHHHHHHHCCCCGGGEEEEECTTS------CEEEEEEEEH
T ss_pred chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCC-CCCHHHHHHHHhcCCCCceEEEEEcCCC------cEEEEEEecH
Confidence 46 6 899999999999999999999999966667 99999999999999993 289999999 4999999999
Q ss_pred hhHHHHHHHHHHHHh---hH------------HHHHHHHHHh
Q psy15544 88 IIVQLLETTLLTLVN---FA------------SWHNDILSTS 114 (125)
Q Consensus 88 ~e~~l~Et~lLaiIs---~~------------s~iAT~aa~~ 114 (125)
.++++|||+||++|| |+ |.+||||+|+
T Consensus 114 ~~~~l~Et~lL~ii~e~~~~~Vat~~~~~~~~~~iatka~r~ 155 (394)
T 2im5_A 114 YRVTLWETPILAVISELYYRFIGAEPDWKQVEEVTRSKGELM 155 (394)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHH
Confidence 999999999999999 77 9999999997
No 7
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2
Probab=99.94 E-value=1.3e-26 Score=194.10 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=90.1
Q ss_pred hhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCC--ceEEEeeCCeeecCCeeEEEEEecchhHH
Q psy15544 14 CVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQ--VTLYAIQEGSVVFPRVPLLRVEGPLIIVQ 91 (125)
Q Consensus 14 ~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~--~~v~a~~EG~v~~p~ep~i~I~Gp~~e~~ 91 (125)
.+++||+++|+.|++++||+||++||++. + +|+++|++||++|||++ .+|++ |||+ |+|+|+|||.+++
T Consensus 53 ~~~~GL~~~l~~l~~~~ft~~ei~yL~~~-~-~f~~~fl~~L~~~rf~~~~v~I~a-~EG~------~~l~i~Gp~~~~~ 123 (408)
T 1yir_A 53 LYLPAIREQLEYLAGLAISDEQLAFLERI-P-FLAPDFIRFLGLFRFNPRYVQTGI-ENDE------FFLRLKGPWLHVI 123 (408)
T ss_dssp GGHHHHHHHHHHHHHCCCCHHHHHHHHTS-T-TSCHHHHHHHHHCCCCGGGEEEEE-ETTE------EEEEEEEEHHHHG
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHhC-C-CCCHHHHHHHHhcCCCCceEEEEc-CCCc------EEEEEEecHHHHH
Confidence 34899999999999999999999999875 6 99999999999999994 38999 9997 6899999999999
Q ss_pred HHHHHHHHHHhhH---------------HHHHHHHHHhHHhhc
Q psy15544 92 LLETTLLTLVNFA---------------SWHNDILSTSMISSQ 119 (125)
Q Consensus 92 l~Et~lLaiIs~~---------------s~iAT~aa~~~~aa~ 119 (125)
+|||+||++||+. |.+||||+|++.+|+
T Consensus 124 llEt~lL~ii~~~~~~~~~~~~~~~~~~~~iatK~~rl~~aa~ 166 (408)
T 1yir_A 124 LFEVPLLAMISEVRNRARYPAATVEQARERLQEKFDWLRREAS 166 (408)
T ss_dssp GGHHHHHHHHHHHHHHHHCTTCBHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhHhhccCCccchHHHHHHHHHHHHHHHHhhc
Confidence 9999999999994 999999999999886
No 8
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2
Probab=99.94 E-value=1.1e-26 Score=196.61 Aligned_cols=99 Identities=15% Similarity=0.063 Sum_probs=92.9
Q ss_pred CCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCC------CCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEE
Q psy15544 10 IRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPC------VEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRV 83 (125)
Q Consensus 10 ~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~------f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I 83 (125)
+++|+|++||+++|++|++++||+||++||++. + + |+++|++||++|||+ ++|+++||| ||+|+|
T Consensus 67 ~~~~~v~aGL~~~l~~l~~~~ft~eei~yL~~~-~-~~~~~~~f~~~fl~~L~~~~~~-~~i~a~~EG------ep~l~I 137 (449)
T 1ybe_A 67 LAEEIDEMELREQLDHARTLRLSKKENIWLAGN-T-FYGRSQIFEPEFLSWLSSYQLP-EYELFKRDG------QYELNF 137 (449)
T ss_dssp STTTSCHHHHHHHHHHHTTCCCCHHHHHHHHHS-C-SSSCSCCSCHHHHHHHHTCCCC-CCEEEECSS------CEEEEE
T ss_pred CcchhHHHHHHHHHHHHHhCCCCHHHHHHHHhc-c-cccCCCCCCHHHHHHHHhCCCC-ceEEEecCC------eEEEEE
Confidence 578999999999999999999999999999875 6 7 999999999999999 599999998 699999
Q ss_pred EecchhHHHHHHHHHHHHhhH----------------------HHHHHHHHHhHHhh
Q psy15544 84 EGPLIIVQLLETTLLTLVNFA----------------------SWHNDILSTSMISS 118 (125)
Q Consensus 84 ~Gp~~e~~l~Et~lLaiIs~~----------------------s~iAT~aa~~~~aa 118 (125)
+|||.++++|||+||++||++ |.+||||+|++ +|
T Consensus 138 ~Gp~~~~~llET~lL~ii~~~~~t~a~~t~~~~~~s~~~~~~~~~iatka~r~~-~a 193 (449)
T 1ybe_A 138 HGRWMDTTLWEIPALSIINELRSRSAMRSLGYFTLDVLYARAKAKMWEKVERLR-EL 193 (449)
T ss_dssp CSBHHHHGGGHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred EecHHHHHHHHHHHHHHHhhhhhcccccccccccchhhHHHHHHHHHHHHHHHh-cc
Confidence 999999999999999999999 99999999994 44
No 9
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=99.69 E-value=2.1e-17 Score=137.73 Aligned_cols=81 Identities=26% Similarity=0.308 Sum_probs=73.5
Q ss_pred cCCCCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCeeEEEEEec
Q psy15544 7 SPPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGP 86 (125)
Q Consensus 7 ~p~~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~ep~i~I~Gp 86 (125)
.|.++++.|+||+++.++.++++ .++|++++||++++||+|+++|+||
T Consensus 53 ~p~~~~~~v~aGl~~~~~~l~~~--------------------------------~~~i~~~~eG~~v~~ge~ll~v~G~ 100 (395)
T 2i14_A 53 LPNNWRWGVLVGVEEVAKLLEGI--------------------------------PVNVYAMPEGTIFHPYEPVLQIEGD 100 (395)
T ss_dssp CGGGCSCEECCCHHHHHHHHTTS--------------------------------SEEEEECCTTCEECTTSCSEEEEEE
T ss_pred CCCCCCceEeccHHHHHHHHhCC--------------------------------CcEEEEEcCCCEecCCCEEEEEEee
Confidence 36777899999999888766521 2789999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 87 LIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 87 ~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
|.+++++|+++||+||++|+|||+|+|++.+|+
T Consensus 101 ~~~~~~~E~~~Lnil~~~SgIAT~a~r~v~aa~ 133 (395)
T 2i14_A 101 YADFGIYETALLGMLSQASGIATAALRIKIAAK 133 (395)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999987
No 10
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=99.61 E-value=8.2e-16 Score=128.29 Aligned_cols=76 Identities=29% Similarity=0.377 Sum_probs=69.4
Q ss_pred cchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceEEEeeCCeeecCCe------eEEEEEe
Q psy15544 12 SPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRV------PLLRVEG 85 (125)
Q Consensus 12 ~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v~a~~EG~v~~p~e------p~i~I~G 85 (125)
++.|+||+++.++.++++ + ++|++++||++++|++ |+++|+|
T Consensus 56 ~~~v~aGl~~~~~~l~~~-------------------------------~-~~i~~~~eG~~v~~g~~~g~~~~ll~v~G 103 (398)
T 2i1o_A 56 TWINFTGLDEVLKLLEGL-------------------------------D-VDLYAIPEGTILFPRDANGLPVPFIRVEG 103 (398)
T ss_dssp SCEECCCHHHHHHHHTTS-------------------------------S-CEEEECCTTCEECSBCTTSCBCEEEEEEE
T ss_pred cceEEcCHHHHHHHHhhC-------------------------------C-eEEEEeCCCCEECCCCcccccceEEEEEE
Confidence 589999999888766521 2 6889999999999999 9999999
Q ss_pred cchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 86 PLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 86 p~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
||.+++++|+++||+||++|+|||+|+|++.+|+
T Consensus 104 ~~~~~~~~E~~~Lnil~~~SgIAT~a~r~v~aa~ 137 (398)
T 2i1o_A 104 RYCDFGMYETAILGFICQASGISTKASKVRLAAG 137 (398)
T ss_dssp EHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999986
No 11
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=99.53 E-value=2.2e-14 Score=114.13 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=69.1
Q ss_pred CcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCCCceE-EEeeCCeeecCCeeEEEEEecchh
Q psy15544 11 RSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTL-YAIQEGSVVFPRVPLLRVEGPLII 89 (125)
Q Consensus 11 ~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~~~~v-~a~~EG~v~~p~ep~i~I~Gp~~e 89 (125)
|.++|+||+++..+.++.+. .+| ++++||+.++||+|+++|+||..+
T Consensus 38 r~~~v~aG~~~~~~~~~~~~--------------------------------~~v~~~~~eG~~v~~g~~~~~v~G~~~~ 85 (273)
T 2b7n_A 38 KQEGVFSGEKYALELLEMTG--------------------------------IECVQTIKDKERFKPKDALMEIRGDFSM 85 (273)
T ss_dssp SSCEECCCHHHHHHHHHHTT--------------------------------CEEEEECCTTCEECTTCEEEEEEEEHHH
T ss_pred cCCEEEEcHHHHHHHHHHCC--------------------------------cEEEEEcCCCCCcCCCCEEEEEEecHHH
Confidence 56889999988776655331 577 689999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 90 VQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 90 ~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
.++.|+.+||++++.|+|||+++|++.+|+
T Consensus 86 ~l~~Er~~Ln~l~~~SgIAT~t~~~v~a~~ 115 (273)
T 2b7n_A 86 LLKVERTLLNLLQHSSGIATLTSRFVEALN 115 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999987
No 12
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=99.49 E-value=4.9e-14 Score=113.59 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=54.8
Q ss_pred ceE-EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 63 VTL-YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 63 ~~v-~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
.+| ++++||+.++||+|+++|+||..+.+..|+.+||++++.|+|||+++|++.+|+
T Consensus 71 ~~v~~~~~dG~~v~~g~~l~~v~G~~~~~l~~Er~~Ln~l~~~SgIAT~t~~~v~a~~ 128 (299)
T 2jbm_A 71 CQVSWFLPEGSKLVPVARVAEVRGPAHCLLLGERVALNTLARCSGIASAAAAAVEAAR 128 (299)
T ss_dssp CEEEESSCTTCEECSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCCCCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577 689999999999999999999999999999999999999999999999999986
No 13
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=99.45 E-value=1.2e-13 Score=110.98 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=54.7
Q ss_pred ceE-EEeeCCeeecCC------eeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 63 VTL-YAIQEGSVVFPR------VPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 63 ~~v-~a~~EG~v~~p~------ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
.+| ++++||+.++|| +|+++|+||..+.++.|+.+||++++.|+|||+++|++.+|+
T Consensus 67 ~~v~~~~~eG~~v~~g~~~~~~~~l~~v~G~~~~~l~~Er~~Ln~l~~~SgIAT~t~~~v~aa~ 130 (294)
T 3c2e_A 67 LQVEWLFKEGSFLEPSKNDSGKIVVAKITGPAKNILLAERTALNILSRSSGIATASHKIISLAR 130 (294)
T ss_dssp CEEEESSCTTCEECGGGSSSSCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCEeCCCCCCCCCcEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567 689999999999 999999999999999999999999999999999999999986
No 14
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=99.15 E-value=6.9e-11 Score=95.24 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=54.5
Q ss_pred ceE-EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 63 VTL-YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 63 ~~v-~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
.+| ++++||+.++||+|+++|+||..+.+..|+.+||++++.|+|||++++++.+++
T Consensus 85 ~~v~~~~~dG~~v~~g~~~~~v~G~~~~~l~~Er~aLn~l~~~SgIAT~t~~~v~~~~ 142 (296)
T 1qap_A 85 VRLTWHVDDGDAIHANQTVFELQGPARVLLTGERTALNFVQTLSGVASEVRRYVGLLA 142 (296)
T ss_dssp SEEEESCCTTCEECTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCEecCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467 789999999999999999999999999999999999999999999999999986
No 15
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=99.06 E-value=4.1e-10 Score=91.92 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=54.3
Q ss_pred ceE-EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 63 VTL-YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 63 ~~v-~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
.+| +.++||+.++||+|+++|+||.......|..+||++++.|+|||++++++.+|+
T Consensus 108 ~~v~~~~~dG~~v~~g~~l~~v~G~a~~ll~~Er~aLN~L~~~SGIAT~t~~~v~aa~ 165 (320)
T 3paj_A 108 VSIEWHVQDGDTLTPNQTLCTLTGPARILLTGERNAMNFIQTLSGCATATARYVQELK 165 (320)
T ss_dssp CEEEESSCTTCEECTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCEecCCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 466 778999999999999999999999999999999999999999999999999986
No 16
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=99.04 E-value=4.6e-10 Score=90.79 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=54.1
Q ss_pred ceE-EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 63 VTL-YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 63 ~~v-~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
.++ +.++||+.++||+|+++|+||.......|..+||++++.|+|||++++++.+++
T Consensus 86 ~~v~~~~~dG~~v~~g~~l~~v~G~a~~ll~~Er~aLN~L~~~SGIAT~t~~~v~a~~ 143 (298)
T 3gnn_A 86 IEVDWRHREGDRMSADSTVCELRGPARALLTAERNALNFLQLLSGVASATRQYVDRIA 143 (298)
T ss_dssp CEEEESSCTTCEECTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCEecCCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455 778999999999999999999999999999999999999999999999999986
No 17
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=98.72 E-value=3.1e-08 Score=79.45 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=53.5
Q ss_pred ceE-EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 63 VTL-YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 63 ~~v-~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
.+| +.++||+.+.+|+++++|+||.......|..+||++.+.|.|||++++++.+++
T Consensus 71 ~~v~~~~~dG~~v~~g~~v~~i~G~~~~ll~~Er~aLn~l~~~SGIAT~t~~~v~~~~ 128 (285)
T 1o4u_A 71 LLSKFNVEDGEYLEGTGVIGEIEGNTYKLLVAERTLLNVLSVMFSVATTTRRFAEKLK 128 (285)
T ss_dssp CEEEESCCTTCEEESCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CEEEEEcCCCCCcCCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455 467999999999999999999999999999999999999999999999999986
No 18
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=98.63 E-value=7.7e-08 Score=77.42 Aligned_cols=56 Identities=11% Similarity=0.182 Sum_probs=52.7
Q ss_pred eE-EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 64 TL-YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 64 ~v-~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
++ +.++||+.+.||+++++|+||.......|..+||++.+.|.|||++++++.+++
T Consensus 76 ~v~~~~~dG~~v~~g~~v~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~t~~~v~~~~ 132 (287)
T 3tqv_A 76 QITWLYSDAQKVPANARIFELKGNVRSILTAERTILNFIQMLSGTATVTNKLVKLIS 132 (287)
T ss_dssp EEEESSCTTCEECTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCEeeCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44 467999999999999999999999999999999999999999999999999976
No 19
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=98.55 E-value=1.7e-07 Score=75.07 Aligned_cols=58 Identities=21% Similarity=0.131 Sum_probs=53.9
Q ss_pred ceE-EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhcc
Q psy15544 63 VTL-YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQL 120 (125)
Q Consensus 63 ~~v-~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~~ 120 (125)
.++ +.++||+.+.+|+++++|+||.......|..+||++.+.|.|||++++++.++.-
T Consensus 72 ~~v~~~~~dG~~v~~g~~v~~i~G~~~~ll~~Er~aLn~l~~~SGIAT~t~~~v~~~~~ 130 (286)
T 1x1o_A 72 TAFTPLVAEGARVAEGTEVARVRGPLRGILAGERLALNLLQRLSGIATLTRAYVEALAG 130 (286)
T ss_dssp CEEEESSCTTCEECTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEEEcCCCCCccCCCEEEEEEEcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 456 4679999999999999999999999999999999999999999999999999863
No 20
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=98.47 E-value=3.5e-07 Score=74.05 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=53.1
Q ss_pred ceE-EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 63 VTL-YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 63 ~~v-~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
.++ +.++||+.+.+|+++++|+||.......|..+||++.+.|.|||++++++.+++
T Consensus 84 ~~v~~~~~dG~~v~~g~~v~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~T~~~v~~~~ 141 (300)
T 3l0g_A 84 VKYEIHKKDGDITGKNSTLVSGEALAIYLLPIERVILNFIQHASGIASITRQFVDEVS 141 (300)
T ss_dssp EEEEECCCTTCEECSSCEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEeCCCCEeeCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344 467999999999999999999999999999999999999999999999999986
No 21
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=98.44 E-value=6.5e-07 Score=71.67 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=53.9
Q ss_pred ceE-EEeeCCeeecCCeeEEEEEecchhHHHHHHHHHHHHhhHHHHHHHHHHhHHhhc
Q psy15544 63 VTL-YAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDILSTSMISSQ 119 (125)
Q Consensus 63 ~~v-~a~~EG~v~~p~ep~i~I~Gp~~e~~l~Et~lLaiIs~~s~iAT~aa~~~~aa~ 119 (125)
.++ +.++||+.+.||+++++|+||.......|..+||++.+.|.|||++++++.++.
T Consensus 71 ~~v~~~~~dG~~v~~g~~v~~i~G~~~~ll~~Er~~Ln~l~~~SGIAT~t~~~v~~~~ 128 (284)
T 1qpo_A 71 YRVLDRVEDGARVPPGEALMTLEAQTRGLLTAERTMLNLVGHLSGIATATAAWVDAVR 128 (284)
T ss_dssp EEEEEECCTTCEECTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCEecCCcEEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466 478999999999999999999999999999999999999999999999999986
No 22
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=51.95 E-value=18 Score=20.89 Aligned_cols=27 Identities=11% Similarity=-0.020 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhh
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKET 42 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~ 42 (125)
.+.+...+..++.=.|++||++.|.+.
T Consensus 2 laalkselqalkkegfspeelaalese 28 (48)
T 1g6u_A 2 LAALKSELQALKKEGFSPEELAALESE 28 (48)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 366788888999999999999988764
No 23
>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1
Probab=40.93 E-value=34 Score=23.53 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=30.6
Q ss_pred hhHHHHHHHHhcC-----CCCHHHHHHHHhhCCCCCCHhHHHHHhcC
Q psy15544 17 YAVPGLSAFRIHS-----RLLFTDIDYLKETLPPCVEEEFYEFLRSV 58 (125)
Q Consensus 17 ~gl~~~i~~l~~l-----~ft~eEi~yL~~~~~~~f~~~fl~~L~~~ 58 (125)
..++..|+.+... ..|+++|+-+.+.++--||++|.+||+.+
T Consensus 5 ~~i~~li~~~~~~~~~~~~~see~I~~~E~~Lgi~lP~dYk~fLk~~ 51 (153)
T 2prv_A 5 SKVENFINENKQNAIFTEGASHENIGRIEENLQCDLPNSYKWFLEKY 51 (153)
T ss_dssp HHHHHHHHHHGGGCEECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHh
Confidence 4456666665543 37899999997654325999999999976
No 24
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1
Probab=39.90 E-value=22 Score=24.57 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHhhCCCCCCHhHHHHHhcCC
Q psy15544 30 RLLFTDIDYLKETLPPCVEEEFYEFLRSVT 59 (125)
Q Consensus 30 ~ft~eEi~yL~~~~~~~f~~~fl~~L~~~r 59 (125)
..|+++|+-+.+.++--||++|.+||+.+.
T Consensus 26 ~~s~~~I~~~E~~Lgi~lP~~Yk~fL~~~~ 55 (160)
T 2icg_A 26 TGTPELIKIYQDALGNEFPETYKLFLEKYG 55 (160)
T ss_dssp CCCHHHHHHHHHHHTCCCCHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 467999999976543259999999999873
No 25
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.29 E-value=34 Score=23.29 Aligned_cols=32 Identities=16% Similarity=0.086 Sum_probs=24.4
Q ss_pred cCCCCHHHHHHHHhhCCCCCCHhHHHHHhcCCCC
Q psy15544 28 HSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTAD 61 (125)
Q Consensus 28 ~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~~rf~ 61 (125)
..+++++|+++|++. + +.+++|.+-...-.+-
T Consensus 76 v~r~~~~qvk~L~k~-g-~wP~~F~~~~~~~~~~ 107 (111)
T 2dgy_A 76 SFVLCKDHVRSLQKE-G-FWPEAFSEVAEKHNSG 107 (111)
T ss_dssp EEECCHHHHHHHHHH-T-CSCHHHHHHHTTCCSS
T ss_pred EEEeCHHHHHHHHHc-C-CCChHHhhcccccCcC
Confidence 356889999999988 5 8999998766544443
No 26
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1
Probab=36.15 E-value=24 Score=24.30 Aligned_cols=28 Identities=25% Similarity=0.125 Sum_probs=22.4
Q ss_pred CCHHHHHHHHhhCCCCCCHhHHHHHhcC
Q psy15544 31 LLFTDIDYLKETLPPCVEEEFYEFLRSV 58 (125)
Q Consensus 31 ft~eEi~yL~~~~~~~f~~~fl~~L~~~ 58 (125)
-|+++|..+.+.+.--|+++|.+||+.+
T Consensus 22 ~t~e~I~~~E~~Lgi~fP~dYk~fl~~~ 49 (135)
T 2pag_A 22 PDEDQLVEIEEQLFINIPFVFKEFLLTV 49 (135)
T ss_dssp CCHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHC
Confidence 3799999997654325999999999974
No 27
>3ufe_A Transcriptional antiterminator (BGLG family); extended helix bundle, arcimboldo; 1.50A {Bacillus subtilis} PDB: 3gwh_A
Probab=31.80 E-value=47 Score=20.93 Aligned_cols=28 Identities=7% Similarity=0.065 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHhcCCCCHHHHHHHHhh
Q psy15544 15 VLYAVPGLSAFRIHSRLLFTDIDYLKET 42 (125)
Q Consensus 15 v~~gl~~~i~~l~~l~ft~eEi~yL~~~ 42 (125)
++.-+-+.|+.--++.++++|+.||.=.
T Consensus 78 ~a~~i~~~ie~~~~i~i~~~Ei~ylalh 105 (111)
T 3ufe_A 78 TAWKLIKILQQTLKKPVHEAEAVYLTLH 105 (111)
T ss_dssp HHHHHHHHHHHHHCSCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 3344455566666889999999999743
No 28
>3d5p_A Putative glucan synthesis regulator of SMI1/KNR4; STR genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Bacteroides fragilis nctc 9343}
Probab=31.53 E-value=38 Score=23.09 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHhhCCCCCCHhHHHHHhc
Q psy15544 29 SRLLFTDIDYLKETLPPCVEEEFYEFLRS 57 (125)
Q Consensus 29 l~ft~eEi~yL~~~~~~~f~~~fl~~L~~ 57 (125)
-..|+++|+-+++.++--||++|.++|+.
T Consensus 13 ~~~s~~~I~~~E~~lgi~lP~~Yk~fl~~ 41 (144)
T 3d5p_A 13 DGASSASIDDVEKLLNTTLPKQYKSFLLW 41 (144)
T ss_dssp CCCCHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34688999988765433599999999996
No 29
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=30.14 E-value=26 Score=27.40 Aligned_cols=47 Identities=11% Similarity=0.227 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHhhCCCCC--C----HhHHHHHhcCCCCCceE
Q psy15544 19 VPGLSAFRIHSRLLFTDIDYLKETLPPCV--E----EEFYEFLRSVTADQVTL 65 (125)
Q Consensus 19 l~~~i~~l~~l~ft~eEi~yL~~~~~~~f--~----~~fl~~L~~~rf~~~~v 65 (125)
.+..+++|.++-|+++|+..+-..+|+.+ + ..-++||++..+++.++
T Consensus 51 ~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i 103 (343)
T 3mva_O 51 EQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEI 103 (343)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCCHHHH
Confidence 46667777778888888777765555322 2 22357777777775444
No 30
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=29.87 E-value=70 Score=20.62 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=21.4
Q ss_pred HHHHHhcCCCCHHHHHHHHhhCCCCCCHhHHHHHhc
Q psy15544 22 LSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRS 57 (125)
Q Consensus 22 ~i~~l~~l~ft~eEi~yL~~~~~~~f~~~fl~~L~~ 57 (125)
-|..|+.+.++++|++.+.+.+ .+.++|...
T Consensus 13 ~iA~LArL~l~eeE~~~~~~~l-----~~Il~~ve~ 43 (92)
T 3kfu_G 13 KLETLAKIRLSPEEEALLLQDL-----KRILDFVDA 43 (92)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHH-----HHHHHHHHH
Confidence 4677889999999998776543 244555543
No 31
>4eiu_A Uncharacterized hypothetical protein; PF12866 family protein, DUF3823, structural genomics, joint for structural genomics, JCSG; HET: PGE; 1.90A {Bacteroides uniformis}
Probab=29.64 E-value=28 Score=27.18 Aligned_cols=27 Identities=26% Similarity=0.653 Sum_probs=22.7
Q ss_pred Cc-eEEEeeCCe----eecCCeeEEEEEecch
Q psy15544 62 QV-TLYAIQEGS----VVFPRVPLLRVEGPLI 88 (125)
Q Consensus 62 ~~-~v~a~~EG~----v~~p~ep~i~I~Gp~~ 88 (125)
|. +++..++|+ .+|.|+-.|++.|||+
T Consensus 49 ~~~~~~v~~DGtf~Nt~lF~G~Yki~~~Gpf~ 80 (249)
T 4eiu_A 49 HNPDFYCMMDGTFQNTKIFKGEYNVRIDGPFI 80 (249)
T ss_dssp CSCCEECCTTSEEEEEEECSEEEEEEEESSBC
T ss_pred ccCCEEECCCCceeeeeEEcceeEEEeCCCee
Confidence 45 678889997 5689999999999997
No 32
>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}
Probab=28.92 E-value=1.1e+02 Score=22.25 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=32.2
Q ss_pred cCCCCCceEEEe---eCCe--eecCCeeEEEEEecchhHHHHHHHHHH
Q psy15544 57 SVTADQVTLYAI---QEGS--VVFPRVPLLRVEGPLIIVQLLETTLLT 99 (125)
Q Consensus 57 ~~rf~~~~v~a~---~EG~--v~~p~ep~i~I~Gp~~e~~l~Et~lLa 99 (125)
+..|++++...+ |+|. +.+.|++.-+|+++.+--.+|++.|=.
T Consensus 137 ~~~~~kGd~i~~~~~p~~~l~~~~~g~~~g~I~~~~f~~al~~iwLG~ 184 (205)
T 4doo_A 137 EYKIPRNSTIDLTKDPGHVLSVAIEGNHVGSVKSHLLCRSILDLYIGE 184 (205)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTEEEEEEECHHHHHHHHHHHHSS
T ss_pred CCCCCCCCEEEEEEcCCCcEEEEECCeeeEEECCHHHHHHHHHHHcCC
Confidence 345677775543 5553 677888999999999999999998743
No 33
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=26.84 E-value=33 Score=21.25 Aligned_cols=28 Identities=7% Similarity=0.013 Sum_probs=21.8
Q ss_pred CCCCcchhhhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 8 PPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 8 p~~~~~~v~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
..+.+|+-.+.|++ .+|++|+++|-+..
T Consensus 20 ~dg~G~It~~eLr~--------~lt~eevd~~i~~~ 47 (75)
T 1h8b_A 20 ASDKPYILAEELRR--------ELPPDQAQYCIKRM 47 (75)
T ss_dssp TTSCSSBCHHHHHH--------HSCHHHHHHHHHHS
T ss_pred hcCCCCcCHHHHHh--------cCCHHHHHHHHHhc
Confidence 45678888788876 48999999996653
No 34
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=25.78 E-value=45 Score=24.73 Aligned_cols=28 Identities=7% Similarity=-0.013 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+.+.+..+..++++++|...|+..+
T Consensus 138 ~~~l~~~~~~l~~L~ld~~E~~lLkAiv 165 (248)
T 3l0l_A 138 ISSIFDFSHSLSALHFSEDEIALYTALV 165 (248)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3556788889999999999999999764
No 35
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=25.76 E-value=46 Score=24.55 Aligned_cols=28 Identities=7% Similarity=0.027 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+.+.+..+..++++++|...|+..+
T Consensus 132 ~~~i~~~~~~l~~L~ld~~E~~lLkAiv 159 (244)
T 1nq7_A 132 VNEAFDFAKNLCSLQLTEEEIALFSSAV 159 (244)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3556778889999999999999999764
No 36
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=25.22 E-value=19 Score=26.99 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=22.1
Q ss_pred hcCCCCHHHHHHHHhhCC---CC---CCHhHHHHHhcC
Q psy15544 27 IHSRLLFTDIDYLKETLP---PC---VEEEFYEFLRSV 58 (125)
Q Consensus 27 ~~l~ft~eEi~yL~~~~~---~~---f~~~fl~~L~~~ 58 (125)
+.+.||++|.+.|++..+ ++ |-++|.+||..+
T Consensus 30 ~~~~fTeeD~~~L~~l~~~l~~~~de~vD~FY~yl~~~ 67 (195)
T 2veb_A 30 EAVMFTAEDEEYIQKAGEVLEDQVEEILDTWYGFVGSH 67 (195)
T ss_dssp HHHTCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHTC
T ss_pred HHhCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence 467899999999987542 01 346777777654
No 37
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=25.11 E-value=42 Score=24.77 Aligned_cols=28 Identities=7% Similarity=-0.160 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+.+.+..+..++++++|...|+..+
T Consensus 141 ~~~l~~~~~~l~~L~ld~~E~~lLkAiv 168 (254)
T 3b0t_A 141 IEPLIKFQVGLKKLNLHEEEHVLLMAIC 168 (254)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3556788889999999999999999764
No 38
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=24.77 E-value=33 Score=24.39 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+.+.+..+..++++++|...|+..+
T Consensus 103 ~~~i~~~~~~~~~L~ld~~E~~lLkaiv 130 (199)
T 3cqv_A 103 LNSMFEFSEKLNALQLSDEEMSLFTAVV 130 (199)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3457788899999999999999998764
No 39
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=23.70 E-value=52 Score=24.83 Aligned_cols=28 Identities=11% Similarity=-0.007 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+.+.+..+..++++++|...|+..+
T Consensus 147 ~~~i~~~~~~l~~L~ld~~E~~lLkAiv 174 (270)
T 1n83_A 147 ISFVFEFGKSLCSMHLTEDEIALFSAFV 174 (270)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3556778889999999999999999764
No 40
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=23.22 E-value=48 Score=25.34 Aligned_cols=28 Identities=7% Similarity=-0.160 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+.+.+..+..++++++|...|+..+
T Consensus 144 ~~~l~~~~~~l~~L~ld~~E~~lLkAIv 171 (292)
T 2o4j_A 144 IEPLIKFQVGLKKLNLHEEEHVLLMAIC 171 (292)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556778888999999999999999764
No 41
>3hn5_A Putative exported protein BF0290; YP_210027.1, structural genomics, joint center for S genomics, JCSG; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=22.33 E-value=40 Score=25.65 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=24.1
Q ss_pred CCceEEEeeCCe---eecCCeeEEEEE---ecch
Q psy15544 61 DQVTLYAIQEGS---VVFPRVPLLRVE---GPLI 88 (125)
Q Consensus 61 ~~~~v~a~~EG~---v~~p~ep~i~I~---Gp~~ 88 (125)
.|.+++..++|+ .+|.|+-.|++. |||+
T Consensus 45 ~~~~~~v~qDGtf~~~lF~G~Yki~~~~gnGPf~ 78 (215)
T 3hn5_A 45 DPINVYVNQDGMYSANLFDGEYQMITKSGNGPWT 78 (215)
T ss_dssp CCEEEEBCTTSEEEEEECSEEEEEEECTTCSSBC
T ss_pred CCeeEEEcCCCcEEEEEECceeEEEEecCCCCcc
Confidence 357888888887 789999999998 9998
No 42
>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A*
Probab=22.22 E-value=1e+02 Score=22.97 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCCceEEE---eeCC--eeec--CCe----eEEEEEecchhHHHHHHHH
Q psy15544 51 FYEFLRSVTADQVTLYA---IQEG--SVVF--PRV----PLLRVEGPLIIVQLLETTL 97 (125)
Q Consensus 51 fl~~L~~~rf~~~~v~a---~~EG--~v~~--p~e----p~i~I~Gp~~e~~l~Et~l 97 (125)
|.++..+-.|.++++.. .|.| +|.+ .|. ..-+|+++.+--.++++.|
T Consensus 135 f~~~F~~~~~~kG~~i~~~~~p~g~l~is~~~~g~~p~~~~~~I~~~~~~~Al~~i~l 192 (222)
T 1eyq_A 135 FAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMI 192 (222)
T ss_dssp HHHHHTTCEECTTCEEEEEEETTTEEEEEEESSSSCCSSCSEEEECHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCCEEEEEEcCCCceEEEEEeCCccccccccccCCHHHHHHHHHHhh
Confidence 33444443466676544 3777 4543 444 4688999999999999886
No 43
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=22.22 E-value=57 Score=24.75 Aligned_cols=28 Identities=11% Similarity=-0.051 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+.+....+..++++++|...|+..+
T Consensus 160 ~~~l~~~~~~~~~L~ld~~E~alLkAiv 187 (273)
T 3vi8_A 160 MEPKFDFAMKFNALELDDSDISLFVAAI 187 (273)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4557788889999999999999998764
No 44
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=22.20 E-value=47 Score=24.36 Aligned_cols=27 Identities=7% Similarity=-0.149 Sum_probs=22.3
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 17 YAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 17 ~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
..+.+....+..++++++|...|+..+
T Consensus 138 ~~i~~~~~~l~~L~ld~~E~~lLkAiv 164 (246)
T 1xvp_B 138 ELLFHFHGTLRKLQLQEPEYVLLAAMA 164 (246)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345667788899999999999999764
No 45
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=22.06 E-value=53 Score=23.94 Aligned_cols=27 Identities=11% Similarity=-0.048 Sum_probs=22.8
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 17 YAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 17 ~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
..+.+....+..++++++|...|+..+
T Consensus 128 ~~i~~~~~~l~~L~ld~~E~~lLkaiv 154 (236)
T 1fcy_A 128 DLVFAFAGQLLPLEMDDTETGLLSAIC 154 (236)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456677888999999999999999764
No 46
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=22.00 E-value=35 Score=25.17 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+.+.+..+..++++++|...|+..+
T Consensus 120 ~~~i~~~~~~l~~L~ld~~E~~lLkaiv 147 (243)
T 3ltx_A 120 FEQVAAVSEQMMQNHLHKDELLLLQAMV 147 (243)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3446677888999999999999999764
No 47
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=21.87 E-value=58 Score=23.57 Aligned_cols=28 Identities=4% Similarity=-0.043 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+.+.+..+..++++++|...|+..+
T Consensus 122 ~~~i~~~~~~l~~L~ld~~E~~lLkaiv 149 (232)
T 1osh_A 122 ITPMFSFYKSIGELKMTQEEYALLTAIV 149 (232)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4567778899999999999999999764
No 48
>4fxt_A Uncharacterized protein; PF12866 family, DUF3823, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.77A {Bacteroides ovatus}
Probab=21.40 E-value=52 Score=24.67 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=23.5
Q ss_pred CCceEEEeeCCe---eecCCeeEEEEE--ecch
Q psy15544 61 DQVTLYAIQEGS---VVFPRVPLLRVE--GPLI 88 (125)
Q Consensus 61 ~~~~v~a~~EG~---v~~p~ep~i~I~--Gp~~ 88 (125)
.|.+++..++|+ .+|.|+-.|++. |||+
T Consensus 41 ~~~~~~v~qDGtf~~~lF~G~Yki~~~~nGpf~ 73 (202)
T 4fxt_A 41 GSIPVYIAQDGSYSVSLFNGDYKLVRMGNAPWE 73 (202)
T ss_dssp CCEEEEBCTTSEEEEEEESEEEEEEEEETCSBC
T ss_pred CCeeEEEcCCCcEEEEEEcceeEEEECCCCCcc
Confidence 456788888887 789999999987 9998
No 49
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Probab=21.20 E-value=83 Score=20.26 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=17.1
Q ss_pred HHHHHhcCCCCHHHHHHHHhh
Q psy15544 22 LSAFRIHSRLLFTDIDYLKET 42 (125)
Q Consensus 22 ~i~~l~~l~ft~eEi~yL~~~ 42 (125)
-|..|+.+.++++|++.+.+.
T Consensus 9 ~iA~LArL~l~eee~~~~~~~ 29 (94)
T 3h0l_C 9 KIAKLARLELKEEEIEVFQKQ 29 (94)
T ss_dssp HHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHH
Confidence 377889999999999877654
No 50
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=21.06 E-value=50 Score=24.24 Aligned_cols=27 Identities=15% Similarity=-0.074 Sum_probs=22.8
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 17 YAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 17 ~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
..+++.+..+..++++++|...|+..+
T Consensus 134 ~~~~~~~~~~~~L~ld~~E~~lLkAiv 160 (246)
T 1ymt_A 134 LRAQELVLQLHALQLDRQEFVCLKFLI 160 (246)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 346677888899999999999999874
No 51
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=20.79 E-value=56 Score=25.14 Aligned_cols=28 Identities=11% Similarity=-0.108 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+.+.+..+..++++++|...|+..+
T Consensus 187 ~~~l~~~~~~l~~L~ld~~E~alLkAIv 214 (302)
T 2hc4_A 187 LEPLVKFQVGLKKLKLHEEEHVLLMAIC 214 (302)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4556778888999999999999999764
No 52
>1h99_A Transcription antiterminator LICT; transcriptional antiterminator, PTS regulatory domain; 1.55A {Bacillus subtilis} SCOP: a.142.1.1 a.142.1.1 PDB: 1tlv_A*
Probab=20.75 E-value=99 Score=21.48 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHh
Q psy15544 19 VPGLSAFRIHSRLLFTDIDYLKE 41 (125)
Q Consensus 19 l~~~i~~l~~l~ft~eEi~yL~~ 41 (125)
+...++..-+..+++||+.||.=
T Consensus 193 ~~~~l~~~~~~~i~~dEi~yl~l 215 (224)
T 1h99_A 193 IQTYIEREYEHKLTSDELLYLTI 215 (224)
T ss_dssp HHHHHHHHHCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHH
Confidence 34445555578999999999963
No 53
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=20.71 E-value=58 Score=24.32 Aligned_cols=27 Identities=15% Similarity=-0.091 Sum_probs=23.0
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 17 YAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 17 ~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
..+.+.+..+..++++++|...|+..+
T Consensus 145 ~~l~~~~~~l~~L~ld~~E~~lLkAiv 171 (257)
T 3plz_A 145 SHAQELVAKLRSLQFDQREFVCLKFLV 171 (257)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456778888999999999999999764
No 54
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=20.54 E-value=51 Score=24.71 Aligned_cols=28 Identities=21% Similarity=0.037 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 16 LYAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 16 ~~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+..+.+.+..+..++++++|...|+..+
T Consensus 153 ~~~i~~~~~~l~~L~ld~~E~~lLkAiv 180 (267)
T 3ilz_A 153 SDAIFELGKSLSAFNLDDTEVALLQAVL 180 (267)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3456778888999999999999999764
No 55
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=20.11 E-value=44 Score=24.33 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 19 VPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 19 l~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
+.+.+..+..+++|++|...|+..+
T Consensus 128 ~~~~~~~l~~L~ld~~E~~~Lkai~ 152 (240)
T 2p1t_A 128 LTELVSKMRDMQMDKTELGCLRAIV 152 (240)
T ss_dssp HHHTHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3566788899999999999999764
No 56
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=20.05 E-value=41 Score=24.59 Aligned_cols=27 Identities=7% Similarity=-0.033 Sum_probs=22.8
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHhhC
Q psy15544 17 YAVPGLSAFRIHSRLLFTDIDYLKETL 43 (125)
Q Consensus 17 ~gl~~~i~~l~~l~ft~eEi~yL~~~~ 43 (125)
..+.+.+..+..++++++|...|+..+
T Consensus 118 ~~l~~~~~~l~~L~ld~~E~~lLkAiv 144 (240)
T 3oll_A 118 DMLLATTSRFRELKLQHKEYLCVKAMI 144 (240)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 446677888999999999999999864
Done!