RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15544
         (125 letters)



>gnl|CDD|178473 PLN02885, PLN02885, nicotinate phosphoribosyltransferase.
          Length = 545

 Score =  123 bits (310), Expect = 4e-34
 Identities = 45/75 (60%), Positives = 58/75 (77%), Gaps = 2/75 (2%)

Query: 33  FT--DIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIV 90
           FT  DID+L+  +P   E+ F+++LR +    V +YAI EGSVVFPRVPL+R+EGPL +V
Sbjct: 69  FTDDDIDFLRSVMPSGCEDAFFDYLRGLDCSDVEVYAIPEGSVVFPRVPLMRIEGPLAVV 128

Query: 91  QLLETTLLTLVNFAS 105
           QLLETT LTLVN+AS
Sbjct: 129 QLLETTFLTLVNYAS 143


>gnl|CDD|238804 cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase
           (NAPRTase), subgroup A. Nicotinate
           phosphoribosyltransferase catalyses the formation of
           NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
           (PRPP) and nicotinic acid, this is the first, and also
           rate limiting, reaction in the NAD salvage synthesis.
           This salvage pathway serves to recycle NAD degradation
           products. This subgroup is present in bacteria and
           eukaryota (except funghi).
          Length = 327

 Score =   99 bits (250), Expect = 2e-26
 Identities = 44/86 (51%), Positives = 50/86 (58%), Gaps = 11/86 (12%)

Query: 22  LSAFRIHSRLLFT--DIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVP 79
           L  FR      FT  DIDYL+        EEF ++LR       T+YAI EG VVFP  P
Sbjct: 53  LENFR------FTEEDIDYLRSLGIFD--EEFLDYLRGFRFT-GTIYAIPEGEVVFPNEP 103

Query: 80  LLRVEGPLIIVQLLETTLLTLVNFAS 105
           LL VEGPLI  QLLET LL L+NF +
Sbjct: 104 LLTVEGPLIEAQLLETLLLNLINFQT 129


>gnl|CDD|236426 PRK09243, PRK09243, nicotinate phosphoribosyltransferase;
           Validated.
          Length = 464

 Score = 77.1 bits (191), Expect = 1e-17
 Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 9/77 (11%)

Query: 33  FT--DIDYLKETLPPCVEEEFYEFLRSV--TADQVTLYAIQEGSVVFPRVPLLRVEGPLI 88
           FT  DI+YL+       +E+F ++LR+   T D   + A+ EG +VFP  PLLRVEGPL 
Sbjct: 67  FTEEDIEYLRSLGI--FDEDFLDYLRNFRFTGD---VRAVPEGELVFPNEPLLRVEGPLA 121

Query: 89  IVQLLETTLLTLVNFAS 105
             QLLET LL ++NF +
Sbjct: 122 EAQLLETLLLNIINFQT 138


>gnl|CDD|238801 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase
           (NAPRTase) family. Nicotinate phosphoribosyltransferase
           catalyses the formation of NAMN and PPi from
           5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic
           acid, this is the first, and also rate limiting,
           reaction in the NAD salvage synthesis. This salvage
           pathway serves to recycle NAD degradation products.
          Length = 343

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 5/77 (6%)

Query: 31  LLFT--DIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLI 88
           L FT  +I+YLK+ L   +  EF+ +L  +    + +YA+ EG+VVFP+ PLL +EGP  
Sbjct: 55  LRFTEEEIEYLKKLL---IFGEFFLYLLFLGKLPLEIYALPEGTVVFPKEPLLTIEGPWP 111

Query: 89  IVQLLETTLLTLVNFAS 105
              LLET LL + N A+
Sbjct: 112 EAGLLETPLLAIWNEAT 128


>gnl|CDD|233446 TIGR01513, NAPRTase_put, putative nicotinate
           phosphoribosyltransferase.  A deep split separates two
           related families of proteins, one of which includes
           experimentally characterized examples of nicotinate
           phosphoribosyltransferase, an the first enzyme of NAD
           salvage biosynthesis. This model represents the other
           family. Members have a different (longer) spacing of
           several key motifs and have an additional C-terminal
           domain of up to 100 residues. One argument suggesting
           that this family represents the same enzyme is that no
           species has a member of both families. Another is that
           the gene encoding this protein is located near other NAD
           salvage biosynthesis genes in Nostoc and in at least
           four different Gram-positive bacteria. NAD and NADP are
           ubiquitous in life. Most members of this family are
           Gram-positive bacteria. An additional set of mutually
           closely related archaeal sequences score between the
           trusted and noise cutoffs [Biosynthesis of cofactors,
           prosthetic groups, and carriers, Pyridine nucleotides].
          Length = 443

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 12/91 (13%)

Query: 35  DIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLE 94
           DI+YL        ++ F ++LR       T+ A+ EGS+VFP  PLL+VEGPLI  QLLE
Sbjct: 62  DIEYLASLGI--FDDAFLDYLREFRF-SGTVRALPEGSLVFPNEPLLQVEGPLIEAQLLE 118

Query: 95  TTLLTLVNFASWHNDILSTSMISSQLNRSYR 125
           T +L ++NF          ++I+++  R   
Sbjct: 119 TLVLNIINFQ---------TLIATKAARIVL 140


>gnl|CDD|224405 COG1488, PncB, Nicotinic acid phosphoribosyltransferase [Coenzyme
           metabolism].
          Length = 405

 Score = 66.2 bits (162), Expect = 7e-14
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 5/76 (6%)

Query: 30  RLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLII 89
           R    +I YL+    P  + +F  +LR      + +YA+ EG+VVFP  P+LR+EGP + 
Sbjct: 70  RFSEEEIAYLRS--LPFFKPDFLNYLRRF---PLDIYAVPEGTVVFPNEPVLRIEGPYLE 124

Query: 90  VQLLETTLLTLVNFAS 105
             LLET LL ++N AS
Sbjct: 125 TILLETPLLGIINEAS 140


>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II;
           This family contains two enzymes that play an important
           role in NAD production by either allowing quinolinic
           acid (QA) , quinolinate phosphoribosyl transferase
           (QAPRTase), or nicotinic acid (NA), nicotinate
           phosphoribosyltransferase (NAPRTase), to be used in the
           synthesis of NAD. QAPRTase catalyses the reaction of
           quinolinic acid (QA) with
           5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
           of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
           pyrophosphate and carbon dioxide, an important step in
           the de novo synthesis of NAD. NAPRTase catalyses a
           similar reaction leading to NAMN and pyrophosphate,
           using nicotinic acid an PPRP as substrates, used in the
           NAD salvage pathway.
          Length = 281

 Score = 62.6 bits (153), Expect = 9e-13
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 47  VEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFAS 105
              E  E LR      + + A+ EG+VV P  PLL +EGP   + LLE  LL L+   S
Sbjct: 37  EALELLELLR--FPGPLVILAVPEGTVVEPGEPLLTIEGPARELLLLERVLLNLLQRLS 93


>gnl|CDD|237112 PRK12484, PRK12484, nicotinate phosphoribosyltransferase;
           Provisional.
          Length = 443

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 36/93 (38%), Positives = 46/93 (49%), Gaps = 17/93 (18%)

Query: 18  AVPGLSAFRIHSRLLFT--DIDYLKETLPPCVEEEF-YEFLRSVTADQVT--LYAIQEGS 72
            V  L AFR      F   D+ YL+         +F  EFL  +   + T  + A+ EG+
Sbjct: 52  VVEFLEAFR------FDEQDLRYLRGLN------QFSEEFLAWLAGLRFTGDVRAVPEGT 99

Query: 73  VVFPRVPLLRVEGPLIIVQLLETTLLTLVNFAS 105
           VVFP  PLL V  PLI  QL+ET LL  +N  S
Sbjct: 100 VVFPNEPLLEVTAPLIEAQLVETFLLNQINHQS 132


>gnl|CDD|238805 cd01571, NAPRTase_B, Nicotinate phosphoribosyltransferase
           (NAPRTase), subgroup B. Nicotinate
           phosphoribosyltransferase catalyses the formation of
           NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
           (PRPP) and nicotinic acid, this is the first, and also
           rate limiting, reaction in the NAD salvage synthesis.
           This salvage pathway serves to recycle NAD degradation
           products.
          Length = 302

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 49  EEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFAS 105
           EE    L  +    V +YA+ EG++  P+ P+LR+EGP      LET +L ++  AS
Sbjct: 42  EEVLALLEGL---PVKVYALPEGTIFNPKEPVLRIEGPYQDFGELETAILGILARAS 95


>gnl|CDD|236328 PRK08662, PRK08662, nicotinate phosphoribosyltransferase; Reviewed.
          Length = 343

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 17/43 (39%), Positives = 29/43 (67%)

Query: 63  VTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFAS 105
           V +YA+ EG++  P+ P++R+EGP +   + ET LL ++  AS
Sbjct: 70  VDVYALPEGTLFDPKEPVMRIEGPYLEFGIYETALLGILAHAS 112


>gnl|CDD|238695 cd01401, PncB_like, Nicotinate phosphoribosyltransferase
           (NAPRTase), related to PncB. Nicotinate
           phosphoribosyltransferase catalyses the formation of
           NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
           (PRPP) and nicotinic acid, this is the first, and also
           rate limiting, reaction in the NAD salvage synthesis.
           This salvage pathway serves to recycle NAD degradation
           products. This subgroup is present in bacteria, archea
           and funghi.
          Length = 377

 Score = 30.7 bits (70), Expect = 0.14
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 30  RLLFTDIDYLKETLPPCVEEEFYEFLRSVTAD--QVTLYAIQEGSVVFPRVPLLRVEGPL 87
           R    ++ YL+ +LP  ++ ++ ++L     +  +V +        +      +R+ GP 
Sbjct: 57  RFSEEELAYLRRSLPF-LKPDYLDYLELFRLNPEEVVVRLDTGKGQLD-----IRISGPW 110

Query: 88  IIVQLLETTLLTLVN 102
               L E  LL +V+
Sbjct: 111 KDTILYEVPLLAIVS 125


>gnl|CDD|130578 TIGR01514, NAPRTase, nicotinate phosphoribosyltransferase.  This
           model represents nicotinate phosphoribosyltransferase,
           the first enzyme in the salvage pathway of NAD
           biosynthesis from nicontinate (niacin). Members are
           primary proteobacterial but also include yeasts and
           Methanosarcina acetivorans. A related family, apparently
           non-overlapping in species distribution, is TIGR01513.
           Members of that family differ in substantially in
           sequence and have a long C-terminal extension missing
           from this family, but are proposed also to act as
           nicotinate phosphoribosyltransferase (see model
           TIGR01513) [Biosynthesis of cofactors, prosthetic
           groups, and carriers, Pyridine nucleotides].
          Length = 394

 Score = 30.1 bits (68), Expect = 0.26
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 28  HSRLLFTDIDYLKETLP--PCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEG 85
           + R    +I+YLK+ LP       ++    R    +QV +    +G +       +R+ G
Sbjct: 57  NLRFTDDEIEYLKQELPYLKSDYIDYLRNFRFHPEEQVEVGIDDKGKLD------IRISG 110

Query: 86  PLIIVQLLETTLLTLVN 102
                 L E  LL +++
Sbjct: 111 SWRDTILYEIPLLAIIS 127


>gnl|CDD|235953 PRK07188, PRK07188, nicotinate phosphoribosyltransferase;
           Provisional.
          Length = 352

 Score = 28.8 bits (65), Expect = 0.67
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 61  DQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLE 94
            ++ +  +++G ++ P   +L +EGP      LE
Sbjct: 70  SKLKIRYLKDGDIINPFETVLEIEGPYENFGFLE 103


>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional.
          Length = 389

 Score = 28.6 bits (65), Expect = 0.68
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 8/41 (19%)

Query: 30  RLLFTDIDYLKETLPPCVE--------EEFYEFLRSVTADQ 62
           R+   D +YL E LP  +E         E  EFLR    + 
Sbjct: 239 RVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279


>gnl|CDD|238802 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase
           (QAPRTase or QPRTase), also called nicotinate-nucleotide
           pyrophosphorylase, is involved in the de novo synthesis
           of NAD in both prokaryotes and eukaryotes. It catalyses
           the reaction of quinolinic acid (QA) with
           5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
           of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
           pyrophosphate and carbon dioxide. QPRTase functions as a
           homodimer with two active sites, each formed by the
           C-terminal region of one subunit and the N-terminal
           region of the other.
          Length = 269

 Score = 28.6 bits (65), Expect = 0.74
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 4/58 (6%)

Query: 49  EEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFASW 106
           E   E    +   +V    +++G  V     LL VEGP   +   E   L   N    
Sbjct: 45  EVAEEVFELLDGIEVEWL-VKDGDRVEAGQVLLEVEGPARSLLTAERVAL---NLLQR 98


>gnl|CDD|217214 pfam02749, QRPTase_N, Quinolinate phosphoribosyl transferase,
           N-terminal domain.  Quinolinate phosphoribosyl
           transferase (QPRTase) or nicotinate-nucleotide
           pyrophosphorylase EC:2.4.2.19 is involved in the de novo
           synthesis of NAD in both prokaryotes and eukaryotes. It
           catalyzes the reaction of quinolinic acid with
           5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
           of Mg2+ to give rise to nicotinic acid mononucleotide
           (NaMN), pyrophosphate and carbon dioxide. The QA
           substrate is bound between the C-terminal domain of one
           subunit, and the N-terminal domain of the other. The
           N-terminal domain has an alpha/beta hammerhead fold.
          Length = 88

 Score = 27.1 bits (61), Expect = 1.3
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 49  EEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFAS 105
           EE  E    +   +V    +++G  V     +L +EGP   +   E   L  +   S
Sbjct: 34  EEAAEVFELLGL-EVEWL-VKDGERVEAGDVILEIEGPARALLTAERVALNFLQRLS 88


>gnl|CDD|219064 pfam06501, Herpes_U55, Human herpesvirus U55 protein.  This family
           consists of several human herpesvirus U55 proteins. The
           function of this family is unknown.
          Length = 432

 Score = 27.6 bits (61), Expect = 1.7
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 6   LSPPIRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEF--YEFLRSVTADQV 63
           L P  R         G    +I+S L+  DI+ LKE   P  +E+   +  L   T + V
Sbjct: 70  LKPLNRHIPSKVLFFGFPILKINSSLVIIDINALKENHDPKEQEQMGVFPSLIRTTNEIV 129

Query: 64  TLYAIQEGSV 73
            +  +     
Sbjct: 130 IVTQVPNKVN 139


>gnl|CDD|222898 PHA02594, nadV, nicotinamide phosphoribosyl transferase;
           Provisional.
          Length = 470

 Score = 27.7 bits (62), Expect = 1.7
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 63  VTLYAIQEGSVVFPRVPLLRVE--GP--LIIVQLLETTLLTLVNFAS 105
           + + A+ EG+VV  +VP+L +E   P    +   LET +L  V + S
Sbjct: 101 IEVRAVPEGTVVPVKVPVLTIENTHPDFFWLAGYLETVILRGVWYPS 147


>gnl|CDD|237807 PRK14732, coaE, dephospho-CoA kinase; Provisional.
          Length = 196

 Score = 26.8 bits (59), Expect = 3.4
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 24/78 (30%)

Query: 29  SRLLFTDIDYLK---ETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEG 85
           S ++F D + LK   E + P V ++F + L++            EG +V   VPL     
Sbjct: 68  SEIVFNDEEKLKALNELIHPLVRKDFQKILQTT----------AEGKLVIWEVPL----- 112

Query: 86  PLIIVQLLETTLLTLVNF 103
                 L ET   TL + 
Sbjct: 113 ------LFETDAYTLCDA 124


>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2).  Histone deacetylase
           2 (HDAC2) is a Zn-dependent class I enzyme that
           catalyzes hydrolysis of N(6)-acetyl-lysine residue of a
           histone to yield a deacetylated histone (EC 3.5.1.98).
           Histone acetylation/deacetylation process is important
           for mediation of transcriptional regulation of many
           genes. HDAC2 is involved in regulation through
           association with DNA binding proteins to target specific
           chromatin regions. It forms transcriptional repressor
           complexes by associating with several proteins,
           including the mammalian zinc-finger transcription factor
           YY1, thus playing an important role in transcriptional
           regulation, cell cycle progression and developmental
           events. Additionally, a few non-histone HDAC2 substrates
           have been found. HDAC2 plays a role in embryonic
           development and cytokine signaling important for immune
           response, and is over-expressed in several solid tumors
           including oral, prostate, ovarian, endometrial and
           gastric cancer. It participates in DNA-damage response,
           along with HDAC1; together, they can promote DNA
           non-homologous end-joining. HDAC2 is considered an
           important cancer prognostic marker. Inhibitors
           specifically targeting HDAC2 could be a therapeutic drug
           option.
          Length = 366

 Score = 26.2 bits (57), Expect = 5.0
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 22  LSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTL 65
           L   + H R+L+ DID         VEE FY   R +T      
Sbjct: 154 LELLKYHQRVLYIDIDIHHGD---GVEEAFYTTDRVMTVSFHKY 194


>gnl|CDD|236270 PRK08471, flgK, flagellar hook-associated protein FlgK; Validated.
          Length = 613

 Score = 26.2 bits (58), Expect = 5.1
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 93  LETTLLTLVNFASWHNDILSTSMISSQL---NRSY 124
           LE TL  LV    + + I S S + +       SY
Sbjct: 209 LELTLSKLVGANVFKSSIKSDSRLDTTSADFGESY 243


>gnl|CDD|226849 COG4425, COG4425, Predicted membrane protein [Function unknown].
          Length = 588

 Score = 26.3 bits (58), Expect = 5.5
 Identities = 7/35 (20%), Positives = 10/35 (28%)

Query: 76  PRVPLLRVEGPLIIVQLLETTLLTLVNFASWHNDI 110
                 R   P   +      +  LV  A W N +
Sbjct: 107 SSPRPPRWAKPAAAIVGAAGAVGFLVQAAVWQNTV 141


>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
          Length = 484

 Score = 25.7 bits (57), Expect = 7.9
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 56  RSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLET 95
           R+V  D   L A+Q G    PR PL   E P    Q LE 
Sbjct: 226 RTV-EDVALLLAVQAGY--DPRDPLSLAEDPARFAQPLEA 262


>gnl|CDD|238806 cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase
           or QPRTase), also called nicotinate-nucleotide
           pyrophosphorylase, is involved in the de novo synthesis
           of NAD in both prokaryotes and eukaryotes. It catalyses
           the reaction of quinolinic acid (QA) with
           5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
           of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
           pyrophosphate and carbon dioxide. QPRTase functions as a
           homodimer with two active sites, each formed by the
           C-terminal region of one subunit and the N-terminal
           region of the other.
          Length = 268

 Score = 25.5 bits (57), Expect = 7.9
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 45  PCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFA 104
           P  EE F      +   +V    +++G  V P   L  VEGP   +   E T L   NF 
Sbjct: 45  PVAEEVFELLDPGI---EVEWL-VKDGDRVEPGQVLATVEGPARSLLTAERTAL---NFL 97

Query: 105 S 105
            
Sbjct: 98  Q 98


>gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional.
          Length = 405

 Score = 25.9 bits (57), Expect = 8.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 47  VEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRV 83
           + ++    LR V  + V + A Q GS +FPR+P L V
Sbjct: 313 IRDDLLRVLRGV--EGVFVRAPQAGSYLFPRLPRLAV 347


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0793    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,283,186
Number of extensions: 554495
Number of successful extensions: 631
Number of sequences better than 10.0: 1
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 38
Length of query: 125
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 40
Effective length of database: 7,167,512
Effective search space: 286700480
Effective search space used: 286700480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.1 bits)