RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15544
(125 letters)
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
genomics, PSI; 2.00A {Enterococcus faecalis} SCOP:
c.1.17.1 d.41.2.1
Length = 494
Score = 88.6 bits (220), Expect = 5e-22
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 35 DIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLE 94
DI YL+E E+F +L + T+ + EG +VF PL+++EGPL QL+E
Sbjct: 72 DIAYLREV--EEYPEDFLTYLANFEFK-CTVRSALEGDLVFNNEPLIQIEGPLAQCQLVE 128
Query: 95 TTLLTLVNFAS 105
T LL +VNF +
Sbjct: 129 TALLNMVNFQT 139
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding,
phosphoribosylpyrophosphate, Zn metal ION, structural
genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus}
SCOP: c.1.17.1 d.41.2.1
Length = 395
Score = 71.2 bits (175), Expect = 7e-16
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 49 EEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLVNFAS 105
EE + L + V +YA+ EG++ P P+L++EG + ET LL +++ AS
Sbjct: 66 EEVAKLLEGI---PVNVYAMPEGTIFHPYEPVLQIEGDYADFGIYETALLGMLSQAS 119
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M
structural genomics, PSI, protein structure initiative;
2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A*
1ytk_A
Length = 398
Score = 70.8 bits (174), Expect = 9e-16
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 49 EEFYEFLRSVTADQVTLYAIQEGSVVFPR------VPLLRVEGPLIIVQLLETTLLTLVN 102
+E + L + V LYAI EG+++FPR VP +RVEG + ET +L +
Sbjct: 64 DEVLKLLEGL---DVDLYAIPEGTILFPRDANGLPVPFIRVEGRYCDFGMYETAILGFIC 120
Query: 103 FAS 105
AS
Sbjct: 121 QAS 123
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, joint center for structural genomics; HET: MSE
MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2
d.41.2.2
Length = 441
Score = 62.1 bits (151), Expect = 1e-12
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 18/86 (20%)
Query: 31 LLFT--DIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPL-------- 80
L FT +I+YLK+ +P + + +++ S E + F +
Sbjct: 75 LRFTEEEIEYLKQEIP-YLPSAYIKYISSSN-----YKLHPEEQISFTSEEIEGKPTHYK 128
Query: 81 --LRVEGPLIIVQLLETTLLTLVNFA 104
+ V G L E LL+L++ A
Sbjct: 129 LKILVSGSWKDTILYEIPLLSLISEA 154
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE,
visfatin, beryllium fluoride, nicotinamide
D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo
sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A*
2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A
2g95_A 2g96_A* 2g97_A* 3g8e_A*
Length = 484
Score = 59.7 bits (144), Expect = 1e-11
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 31 LLFT--DIDYLKETLPPCVEEEF--YEFLRSVTA-----DQVTLYAIQEGSVVFPRVPLL 81
+ T I K+ +++ + + + + A+ EG V+ L
Sbjct: 73 KVVTKEKIQEAKDVYKEHFQDDVFNEKGWNYILEKYDGHLPIEIKAVPEGFVIPRGNVLF 132
Query: 82 RVEGPLIIVQLLETTLLTLV 101
VE L + T++
Sbjct: 133 TVENTDPECYWLTNWIETIL 152
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural
genomics, protein structure initiative, hypothetical
protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa}
SCOP: c.1.17.2 d.41.2.2
Length = 408
Score = 55.0 bits (133), Expect = 4e-10
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 29 SRLLFT--DIDYLKETLPPCVEEEFYEFLRSV--TADQVTLYAIQEGSVVFPRVPLLRVE 84
+ L + + +L+ P + +F FL V + + LR++
Sbjct: 66 AGLAISDEQLAFLERI--PFLAPDFIRFLGLFRFNPRYV-------QTGIENDEFFLRLK 116
Query: 85 GPLIIVQLLETTLLTLVNFAS 105
GP + V L E LL +++
Sbjct: 117 GPWLHVILFEVPLLAMISEVR 137
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC,
PSI, protein structure initiative; 2.20A {Porphyromonas
gingivalis}
Length = 394
Score = 54.0 bits (130), Expect = 8e-10
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 31 LLFT--DIDYLKETLPPCVEEEFYEFLRSV--TADQVTLYAIQEGSVVFPRVPLLRVEGP 86
L T + ++L+ LP + +FL ++VT+ +G + +R +G
Sbjct: 60 LSLTRDEKEFLQRELPYL-PPIYIDFLDGFRFDPEEVTVSIDAQGHLD------IRAQGL 112
Query: 87 LIIVQLLETTLLTLVN 102
L V L ET +L +++
Sbjct: 113 LYRVTLWETPILAVIS 128
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2
d.41.2.2
Length = 449
Score = 47.6 bits (113), Expect = 2e-07
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 13/78 (16%)
Query: 31 LLFT--DIDYLKETLP----PCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVE 84
L + + +L E EF +L S + ++G L
Sbjct: 86 LRLSKKENIWLAGNTFYGRSQIFEPEFLSWLSSYQLPEYE-LFKRDGQYE------LNFH 138
Query: 85 GPLIIVQLLETTLLTLVN 102
G + L E L+++N
Sbjct: 139 GRWMDTTLWEIPALSIIN 156
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, center for structural genomics of infec
diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia
pestis}
Length = 407
Score = 46.2 bits (110), Expect = 4e-07
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 16/89 (17%)
Query: 29 SRLLFT--DIDYLKETLPPCVEEEFYEFLR---------SVTADQVTLYAIQEG---SVV 74
+L T + YL P ++++ +LR SV L G V+
Sbjct: 62 GQLALTSDEFIYLSSL--PFFQDDYLHWLRDFRFKPEQVSVAVHDGKLDIRIAGLWCEVI 119
Query: 75 FPRVPLLRVEGPLIIVQLLETTLLTLVNF 103
VPLL V ++ +
Sbjct: 120 MWEVPLLAVISEIVHRRRSTQVTTDQAVQ 148
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.008
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 20/113 (17%)
Query: 22 LSAFRIHSRLLFT-----DIDYLKETLPPCVEEEFYEFLRSVTADQV-TLYAIQEGSVVF 75
+AF + ++L T D+L + + ++T D+V +L +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD--HHSMTLTPDEVKSLLL----KYLD 312
Query: 76 PRVPLLRVE----GPL---IIVQLLETTLLTLVNFASWHNDILSTSMISSQLN 121
R L E P II + + L T N+ + D L+T +I S LN
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-IIESSLN 364
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.031
Identities = 29/163 (17%), Positives = 43/163 (26%), Gaps = 68/163 (41%)
Query: 15 VLYAVPGLSAFR--------IHSRLLFTDIDYLKETLPPCVEE---EFYE---------- 53
VL L+ F IH+ L + +T +E +
Sbjct: 83 VLNLC--LTEFENCYLEGNDIHA--LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 54 ------FLRSVTADQVTLYAI---QEGSVVFPRVPL--LR----VEGPLI--IVQLLETT 96
R+V L AI Q G+ LR L+ +++ T
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQ-GN---TDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 97 LLTLV--------------NFASW-HN-------DILSTSMIS 117
L L+ N W N D L + IS
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Score = 28.9 bits (64), Expect = 0.49
Identities = 28/134 (20%), Positives = 42/134 (31%), Gaps = 49/134 (36%)
Query: 3 SYVLSPPIRSPCVLY----------AVPGLSAFRI--------------------HSRLL 32
+ V+S P +S LY A GL RI HS LL
Sbjct: 376 NLVVSGPPQS---LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 33 FTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQL 92
D + + L F + Q+ +Y +GS LRV I ++
Sbjct: 433 VPASDLINKDL-VKNNVSF-----NAKDIQIPVYDTFDGSD-------LRVLSGSISERI 479
Query: 93 LETTLLTLVNFASW 106
++ + V W
Sbjct: 480 VDCIIRLPVK---W 490
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor
prote transmembrane; HET: BOG; 1.57A {Rattus
norvegicus}
Length = 143
Score = 30.5 bits (69), Expect = 0.072
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 19 VPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTAD 61
+PG+ F+I++ + + + D L E + +V D
Sbjct: 28 IPGIKIFQINAPIYYANSDLYSSALKRKTGVNGSENIHTVILD 70
>2kln_A Probable sulphate-transport transmembrane protein; SLC26,
sulfate, antisigma factor antagonist, ensemble
structures, transport protein; NMR {Mycobacterium
bovis}
Length = 130
Score = 27.7 bits (62), Expect = 0.71
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 19 VPGLSAFRIHSRLLFTDIDYLKETLPPCVEEE 50
VPGL +R + L F + + + V+++
Sbjct: 13 VPGLVVYRYDAPLCFANAEDFRRRALTVVDQD 44
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 26.4 bits (59), Expect = 2.7
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 14/51 (27%)
Query: 15 VLYAVPGLSAFRIHSRLLFT--------DIDYLKETLPPCVEEEFYEFLRS 57
VL + G+ + + + ++D + + L V L
Sbjct: 386 VLLSC-GIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAV-----NQLEG 430
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 26.3 bits (59), Expect = 2.9
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 14/51 (27%)
Query: 15 VLYAVPGLSAFRIHSRLLFT--------DIDYLKETLPPCVEEEFYEFLRS 57
VL A GL H LL T D+D L E LP + E LRS
Sbjct: 331 VLMAC-GLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVI-----ERLRS 375
>3hkw_A NS5B RNA-dependent RNA polymerase; HCV polymerase,
1,5-benzodiazepine, transferase; HET: IX6; 1.55A
{Hepatitis c virus subtype 1A} PDB: 3qgi_A* 3qgh_A*
2xi3_A* 2xi2_A* 3e51_A* 3bsa_A* 3bsc_A* 3br9_A* 3co9_A*
3cvk_A* 3cwj_A* 3d28_A* 3d5m_A* 3cde_A* 3gyn_A* 3h2l_A*
3igv_A* 2ax0_A* 2awz_A* 2ax1_A* ...
Length = 581
Score = 26.2 bits (57), Expect = 4.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 8 PPIRSPCVLYAVPGLSAFRIHS 29
P+ P ++ + GLSAF +HS
Sbjct: 458 EPLDLPPIIQRLHGLSAFSLHS 479
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 24.8 bits (53), Expect = 9.1
Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
Query: 10 IRSPCVLYAVPGLSAFRIHSRLLFTDIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQ 69
+ P ++ F H + + + + + PC+ + + V ++ I
Sbjct: 134 LILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYINH----NNKIVKVFCIG 189
Query: 70 EGSVVFPRVPLLRVE 84
R L V
Sbjct: 190 NTLKWQTRTSLPNVH 204
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.405
Gapped
Lambda K H
0.267 0.0853 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,830,615
Number of extensions: 97278
Number of successful extensions: 361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 23
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.2 bits)