RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15544
(125 letters)
>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate
phosphoribosyltransferase EF2626 {Enterococcus faecalis
[TaxId: 1351]}
Length = 137
Score = 70.6 bits (173), Expect = 2e-17
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 35 DIDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLE 94
DI YL+E E+F +L + + T+ + EG +VF PL+++EGPL QL+E
Sbjct: 69 DIAYLREV--EEYPEDFLTYLANFEF-KCTVRSALEGDLVFNNEPLIQIEGPLAQCQLVE 125
Query: 95 TTLLTLVNFAS 105
T LL +VNF +
Sbjct: 126 TALLNMVNFQT 136
>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase,
N-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 149
Score = 62.4 bits (152), Expect = 4e-14
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 35 DIDYLKETLPPCVEEEFYEFLRSV-----TADQVTLYAIQEGSVVFPRVPLLRVEGPLII 89
+I+YLK+ +P + + +++ S +Q++ + + + V G
Sbjct: 69 EIEYLKQEIP-YLPSAYIKYISSSNYKLHPEEQISFTSEEIEGKPTHYKLKILVSGSWKD 127
Query: 90 VQLLETTLLTLVN 102
L E LL+L++
Sbjct: 128 TILYEIPLLSLIS 140
>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase
Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Length = 119
Score = 56.7 bits (137), Expect = 4e-12
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 53 EFLRSVTADQVTLYAIQEGS------VVFPRVPLLRVEGPLIIVQLLETTLLTLVNFAS 105
E L+ + V LYAI EG+ VP +RVEG + ET +L + AS
Sbjct: 59 EVLKLLEGLDVDLYAIPEGTILFPRDANGLPVPFIRVEGRYCDFGMYETAILGFICQAS 117
>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosphorylase
PF1904 {Pyrococcus furiosus [TaxId: 2261]}
Length = 110
Score = 56.0 bits (135), Expect = 5e-12
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 51 FYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIVQLLETTLLTLV 101
E + + V +YA+ EG++ P P+L++EG + ET LL ++
Sbjct: 59 VEEVAKLLEGIPVNVYAMPEGTIFHPYEPVLQIEGDYADFGIYETALLGML 109
>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase,
N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 141
Score = 52.4 bits (126), Expect = 2e-10
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 29 SRLLFTD--IDYLKETLPPCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGP 86
+ L +D + +L+ P + +F FL + + LR++GP
Sbjct: 63 AGLAISDEQLAFLERI--PFLAPDFIRFLGLFR-----FNPRYVQTGIENDEFFLRLKGP 115
Query: 87 LIIVQLLETTLLTLVN 102
+ V L E LL +++
Sbjct: 116 WLHVILFEVPLLAMIS 131
>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase,
N-terminal domain {Agrobacterium tumefaciens [TaxId:
358]}
Length = 160
Score = 49.1 bits (117), Expect = 6e-09
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 11/72 (15%)
Query: 35 DIDYLKETLP----PCVEEEFYEFLRSVTADQVTLYAIQEGSVVFPRVPLLRVEGPLIIV 90
+ +L E EF +L S + ++G L G +
Sbjct: 85 ENIWLAGNTFYGRSQIFEPEFLSWLSSYQLPEYE-LFKRDGQYE------LNFHGRWMDT 137
Query: 91 QLLETTLLTLVN 102
L E L+++N
Sbjct: 138 TLWEIPALSIIN 149
>d2j5wa3 b.6.1.3 (A:347-553) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 207
Score = 25.1 bits (54), Expect = 3.0
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 85 GPLIIVQLLETTLLTLVNFAS------WHNDILSTSM 115
GP+I ++ +T +T N + + +
Sbjct: 85 GPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNN 121
>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 218
Score = 24.5 bits (53), Expect = 4.3
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 18/58 (31%)
Query: 16 LYAVPGLSAFRIHSRLLFTDIDYLKETLPPC------------------VEEEFYEFL 55
+ A+P F I + YLK TL V+E+ YE+L
Sbjct: 66 IVAIPDNGVFYIKNGSFVLTYRYLKATLADINDHIVWSGFKVVEDNGKLVQEDVYEYL 123
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga
maritima [TaxId: 2336]}
Length = 78
Score = 23.4 bits (50), Expect = 5.2
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 35 DIDYLKETLPPCVEEEFYEFLRSV 58
+ID ++ + +E+E YE L S+
Sbjct: 2 NIDEIERKIDEAIEKEDYETLLSL 25
>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa
subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 217
Score = 24.1 bits (52), Expect = 6.2
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 33 FTDIDY--LKETLPPCVEEEFYEFLRSVT 59
F DI+ +K + E E+L+ +T
Sbjct: 187 FVDINIEDVKAYIKKVEPREAQEYLKDLT 215
>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId:
219653]}
Length = 136
Score = 23.4 bits (50), Expect = 8.0
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 85 GPLIIVQLLETTLLTLVNFASWHNDILSTSM 115
PLI + + + +++ + N +TS+
Sbjct: 33 APLITGNIDDRFQINVIDQLTDANMRRATSI 63
>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus
[TaxId: 11103]}
Length = 530
Score = 23.6 bits (51), Expect = 9.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 8 PPIRSPCVLYAVPGLSAFRIHS 29
P+ P ++ + GLSAF +HS
Sbjct: 455 EPLDLPQIIERLHGLSAFSLHS 476
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.405
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 441,518
Number of extensions: 18503
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 15
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (22.7 bits)