BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15548
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/49 (97%), Positives = 49/49 (100%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWS 57
DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARW+EWLDPSIKKTEWS
Sbjct: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|2DIN|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human
Cell Division Cycle 5-Like Protein
Length = 66
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/54 (85%), Positives = 50/54 (92%)
Query: 50 SIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRARRK 103
S KKTEWSREE+EKLLHLAKLMPTQWRTIAPIIGRTAAQCLE YEFLL +A ++
Sbjct: 6 SGKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQR 59
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLA 68
D++++ V + G W RI S L +S KQC+ RWF LDP++ K W+ EEDE +
Sbjct: 10 DDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNY 69
Query: 69 KLMPTQWRTIAPII-GRTAAQCLERYE 94
+ ++W IA +I GRT R+
Sbjct: 70 LKLGSKWSVIAKLIPGRTDNAIKNRWN 96
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLA 68
DE LK V + G + W IA+ L ++ QC+ RW + L+P + K W++EED++++ L
Sbjct: 14 DEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLV 73
Query: 69 -KLMPTQWRTIAPII-GRTAAQCLERYEFLL 97
K P +W IA + GR QC ER+ L
Sbjct: 74 QKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLA 68
D+ + V KYG +WS IA L + KQC+ RW L+P +KKT W+ EED +
Sbjct: 66 DQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 125
Query: 69 KLMPTQWRTIAPII-GRTAAQCLERYEFLLYR 99
K + +W IA ++ GRT + + R
Sbjct: 126 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 157
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 51 IKKTEWSREEDEKLLHLAKLMPT-QWRTIAPII-GRTAAQCLERYEFLL 97
+ KT W+REEDEKL L + T W+ IA + RT QC R++ +L
Sbjct: 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 52
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLA 68
D+ + V KYG +WS IA L + KQC+ RW L+P +KKT W+ EED +
Sbjct: 35 DQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 94
Query: 69 KLMPTQWRTIAPII-GRTAAQCLERYEFLLYR 99
K + +W IA ++ GRT + + R
Sbjct: 95 KRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRR 126
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 27 IASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLL-HLAKLMPTQWRTIAPII-GR 84
+ +++ ++ QC+ RW + L+P + K W++EED++++ H+ K P +W IA + GR
Sbjct: 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGR 60
Query: 85 TAAQCLERYEFLL 97
QC ER+ L
Sbjct: 61 IGKQCRERWHNHL 73
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLA 68
D+ + V KYG QW+ IA L + KQC+ RW L+P +KK+ W+ EED +
Sbjct: 15 DQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAH 74
Query: 69 KLMPTQWRTIAPII-GRTAAQCLERYEFLLYR 99
K++ +W IA ++ GRT + + R
Sbjct: 75 KVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKR 106
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 49 PSIKKTEWSREEDEKLLHLAKLMPT-QWRTIAPII-GRTAAQCLERYEFLLYRARRKA 104
P + K W++EED+K++ L K T QW IA + GR QC ER+ L +K+
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKS 60
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
Length = 105
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLA 68
D+ + V KYG +WS IA L + KQC+ RW L+P +KKT W+ EED +
Sbjct: 12 DQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 71
Query: 69 KLMPTQWRTIAPII-GRT 85
K + +W IA ++ GRT
Sbjct: 72 KRLGNRWAEIAKLLPGRT 89
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 53 KTEWSREEDEKLLHLA-KLMPTQWRTIAPII-GRTAAQCLERYEFLL 97
K W++EED++++ L K P +W IA + GR QC ER+ L
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLA 68
D+ + V KYG +WS IA L + KQC+ RW L+P +KKT W+ EED +
Sbjct: 12 DQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 71
Query: 69 KLMPTQWRTIAPII-GRT 85
K + +W IA ++ GRT
Sbjct: 72 KRLGNRWAEIAKLLPGRT 89
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 53 KTEWSREEDEKLLHLA-KLMPTQWRTIAPII-GRTAAQCLERYEFLL 97
K W++EED++++ L K P +W IA + GR QC ER+ L
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLA 68
DE+LK AV ++G + W IA+ ++A+QC+ RW +L PSI T W+ EED L+
Sbjct: 19 DEMLKRAVAQHGSD-WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKI 77
Query: 69 KLMPTQWRTIAPII-GRTAAQCLERY 93
+ QW IA GRT R+
Sbjct: 78 QEYGRQWAIIAKFFPGRTDIHIKNRW 103
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 52 KKTEWSREEDEKLLHLAKLMPTQWRTIAPII-GRTAAQCLERYEFLL 97
KK +++ EEDE L + W+ IA R A QC +R++ L
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%)
Query: 12 LKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLM 71
L+ VM+YG W RI+ L+ ++ +QC+ RW +++P+++ WS EED L
Sbjct: 12 LQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEY 71
Query: 72 PTQWRTIAPIIGRTAAQCLERYEFLLYRARRK 103
+W I+ + + + ++ R R K
Sbjct: 72 GPKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPS 50
D+ L V KYG +WS IA L + KQC+ RW L+P
Sbjct: 11 DQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 53 KTEWSREEDEKLLHLA-KLMPTQWRTIAPII-GRTAAQCLERYEFLL 97
K W++EED++L+ L K P +W IA + GR QC ER+ L
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPS 50
D+ + V KYG +WS IA L + KQC+ RW L+P
Sbjct: 11 DQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 53 KTEWSREEDEKLLHLA-KLMPTQWRTIAPII-GRTAAQCLERYEFLL 97
K W++EED++++ L K P +W IA + GR QC ER+ L
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPS 50
D+ + V KYG +WS IA L + KQC+ RW L+P
Sbjct: 11 DQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 53 KTEWSREEDEKLLHLA-KLMPTQWRTIAPII-GRTAAQCLERYEFLL 97
K W++EED++++ L K P +W IA + GR QC ER+ L
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 51 IKKTEWSREEDEKLLHLAKLMPT-QWRTIAPII-GRTAAQCLERYEFLL 97
+ KT W+REEDEKL L + T W+ IA + RT QC R++ +L
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPS 50
DE LK V + G + W IA+ L ++ QC+ RW + L+P
Sbjct: 11 DEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 51 IKKTEWSREEDEKLLHLAKLMPT-QWRTIAPII-GRTAAQCLERYEFLL 97
+ KT W+REEDEKL L + T W+ IA + RT QC R++ +L
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPS 50
DE LK V + G + W IA+ L ++ QC+ RW + L+P
Sbjct: 11 DEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARW 43
DE L+A V ++G+ W +AS ++ +QC+ RW
Sbjct: 16 DEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 50 SIKKTEWSREEDEKLLHLAKLMPTQ-WRTIAP-IIGRTAAQCLERY 93
S K +W+ EEDE+L L + Q W+ +A RT QC R+
Sbjct: 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
>pdb|2LTP|A Chain A, Solution Structure Of The Sant2 Domain Of The Human
Nuclear Receptor Corepressor 2 (Ncor2), Northeast
Structural Genomics Consortium (Nesg) Target Id Hr4636e
Length = 89
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 13 KAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEW 46
K ++++G+N WS IA ++ K+ QCK +F +
Sbjct: 28 KKGLLEHGRN-WSAIARMVGSKTVSQCKNFYFNY 60
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20
Structures
Length = 54
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 51 IKKTEWSREEDEKLLHLAKLMPTQWRTIAPII-GRT 85
+KKT W+ EED L K + +W IA ++ GRT
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRT 38
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
Dnajc2, Northeast Structural Genomics Consortium Target
Hr8254a
Length = 73
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 54 TEWSREEDEKLLHLAKLMPTQ----WRTIAPII-GRTAAQCLERYEFLL 97
T W+ EE + L K P W+ IA + GRT C++RY+ L+
Sbjct: 4 TPWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELV 52
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 51 IKKTEWSREEDEKLLHLAKLMPTQWRTIAPII-GRT 85
+KKT W+ EED + K + +W IA ++ GRT
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRT 36
>pdb|1IV6|A Chain A, Solution Structure Of The Dna Complex Of Human Trf1
Length = 70
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRK 34
D+ L++ V KYG+ WS+I LLH K
Sbjct: 19 DKNLRSGVRKYGEGNWSKI--LLHYK 42
>pdb|1ITY|A Chain A, Solution Structure Of The Dna Binding Domain Of Human
Trf1
Length = 69
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRK 34
D+ L++ V KYG+ WS+I LLH K
Sbjct: 18 DKNLRSGVRKYGEGNWSKI--LLHYK 41
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1,
Nmr, 18 Structures
Length = 53
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRK 34
D+ L++ V KYG+ WS+I LLH K
Sbjct: 11 DKNLRSGVRKYGEGNWSKI--LLHYK 34
>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0T|B Chain B, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna
Length = 53
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRK 34
D+ L++ V KYG+ WS+I LLH K
Sbjct: 10 DKNLRSGVRKYGEGNWSKI--LLHYK 33
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
From Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
From Aquifex Aeolicus Vf5
Length = 375
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 52 KKTEWSREEDEKLLHLAKLMPTQWR 76
K TE +E+ EKLLH++ L W+
Sbjct: 48 KLTEALKEQVEKLLHVSNLYENPWQ 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.132 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,129,044
Number of Sequences: 62578
Number of extensions: 104689
Number of successful extensions: 317
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 49
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)