Query psy15548
Match_columns 108
No_of_seqs 197 out of 1129
Neff 8.4
Searched_HMMs 29240
Date Sat Aug 17 00:07:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.6E-40 8.7E-45 206.8 12.3 102 2-103 2-104 (107)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 8.3E-40 2.8E-44 203.7 10.9 99 2-100 5-104 (105)
3 3zqc_A MYB3; transcription-DNA 100.0 9.2E-40 3.2E-44 210.7 9.1 103 2-104 3-106 (131)
4 3osg_A MYB21; transcription-DN 100.0 1.9E-38 6.4E-43 203.4 11.7 98 2-100 12-110 (126)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 3E-38 1E-42 202.8 11.0 99 2-100 28-127 (128)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.1E-35 3.7E-40 197.0 10.3 99 2-100 59-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 8.5E-37 2.9E-41 202.3 4.4 103 2-104 7-111 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 2.6E-27 8.7E-32 151.8 4.1 78 27-104 1-80 (128)
9 2dim_A Cell division cycle 5-l 99.9 9.1E-26 3.1E-30 130.9 5.5 60 2-61 10-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.9 5.6E-22 1.9E-26 137.1 8.6 99 2-100 9-200 (246)
11 2din_A Cell division cycle 5-l 99.9 7.3E-22 2.5E-26 113.2 5.9 60 46-105 2-61 (66)
12 2juh_A Telomere binding protei 99.8 3.4E-21 1.2E-25 121.7 6.1 77 2-78 18-104 (121)
13 2llk_A Cyclin-D-binding MYB-li 99.8 1.9E-21 6.4E-26 113.2 4.1 60 38-98 8-68 (73)
14 1guu_A C-MYB, MYB proto-oncoge 99.8 9.5E-21 3.3E-25 103.7 6.4 49 2-50 4-52 (52)
15 2d9a_A B-MYB, MYB-related prot 99.8 1.6E-20 5.4E-25 105.7 7.1 51 2-52 9-59 (60)
16 1gvd_A MYB proto-oncogene prot 99.8 1.1E-20 3.6E-25 103.6 6.1 49 2-50 4-52 (52)
17 2roh_A RTBP1, telomere binding 99.8 1.9E-20 6.4E-25 118.5 8.0 73 2-74 32-114 (122)
18 2d9a_A B-MYB, MYB-related prot 99.8 4.1E-21 1.4E-25 108.1 4.1 55 48-102 3-59 (60)
19 1ity_A TRF1; helix-turn-helix, 99.8 3E-20 1E-24 107.3 6.2 56 2-57 11-68 (69)
20 2cu7_A KIAA1915 protein; nucle 99.8 2.4E-20 8.1E-25 108.6 5.5 59 47-105 3-62 (72)
21 3sjm_A Telomeric repeat-bindin 99.8 3.9E-20 1.3E-24 105.3 6.2 51 2-52 12-64 (64)
22 1guu_A C-MYB, MYB proto-oncoge 99.8 1.9E-20 6.6E-25 102.5 4.2 49 51-99 1-51 (52)
23 2dim_A Cell division cycle 5-l 99.8 2E-20 6.9E-25 108.3 3.8 57 48-104 4-62 (70)
24 1gvd_A MYB proto-oncogene prot 99.8 3.1E-20 1.1E-24 101.7 4.2 49 51-99 1-51 (52)
25 1x41_A Transcriptional adaptor 99.8 1.6E-19 5.4E-24 101.6 7.0 50 2-51 9-58 (60)
26 1w0t_A Telomeric repeat bindin 99.8 3.5E-19 1.2E-23 97.9 6.3 47 2-48 3-51 (53)
27 1x41_A Transcriptional adaptor 99.8 2E-19 6.7E-24 101.2 5.1 53 48-100 3-57 (60)
28 1ity_A TRF1; helix-turn-helix, 99.8 1.3E-19 4.4E-24 104.6 4.3 58 47-104 4-65 (69)
29 2elk_A SPCC24B10.08C protein; 99.8 4.6E-19 1.6E-23 99.1 6.3 46 2-47 10-56 (58)
30 2yum_A ZZZ3 protein, zinc fing 99.8 2.4E-19 8.2E-24 105.0 4.7 59 48-106 3-68 (75)
31 1w0t_A Telomeric repeat bindin 99.8 3.4E-19 1.2E-23 97.9 4.8 47 52-98 1-51 (53)
32 3sjm_A Telomeric repeat-bindin 99.8 2E-19 6.8E-24 102.4 4.0 51 51-101 9-63 (64)
33 2elk_A SPCC24B10.08C protein; 99.7 1.8E-18 6.2E-23 96.6 5.5 50 48-97 4-56 (58)
34 2ckx_A NGTRF1, telomere bindin 99.7 1.5E-17 5.1E-22 99.0 8.5 68 2-69 1-78 (83)
35 2yum_A ZZZ3 protein, zinc fing 99.7 4.3E-18 1.5E-22 99.6 5.2 53 2-54 9-66 (75)
36 2din_A Cell division cycle 5-l 99.7 3.1E-18 1.1E-22 97.9 3.3 51 2-54 10-60 (66)
37 2cu7_A KIAA1915 protein; nucle 99.7 1.4E-17 4.8E-22 96.7 5.1 51 2-53 10-60 (72)
38 2ltp_A Nuclear receptor corepr 99.5 1.9E-18 6.5E-23 104.3 0.0 55 46-100 9-64 (89)
39 3osg_A MYB21; transcription-DN 99.7 1.6E-17 5.5E-22 105.9 3.8 57 48-104 6-63 (126)
40 1gv2_A C-MYB, MYB proto-oncoge 99.7 1.8E-17 6E-22 102.5 3.3 54 51-104 2-57 (105)
41 2yus_A SWI/SNF-related matrix- 99.7 1.2E-16 4.1E-21 94.3 5.9 44 2-46 19-62 (79)
42 2cqr_A RSGI RUH-043, DNAJ homo 99.7 1.7E-16 5.8E-21 92.2 5.4 51 49-99 14-69 (73)
43 2k9n_A MYB24; R2R3 domain, DNA 99.6 5.3E-17 1.8E-21 100.8 3.2 52 53-104 1-54 (107)
44 2llk_A Cyclin-D-binding MYB-li 99.6 4.9E-16 1.7E-20 90.3 6.9 48 2-52 24-71 (73)
45 2aje_A Telomere repeat-binding 99.6 2.2E-16 7.6E-21 97.5 5.6 70 2-71 14-93 (105)
46 2yus_A SWI/SNF-related matrix- 99.6 2E-16 6.9E-21 93.3 4.1 47 50-96 15-62 (79)
47 3zqc_A MYB3; transcription-DNA 99.6 2E-16 6.7E-21 101.4 4.2 57 2-59 55-111 (131)
48 2cqr_A RSGI RUH-043, DNAJ homo 99.6 4.3E-16 1.5E-20 90.5 3.6 47 2-48 19-68 (73)
49 2ckx_A NGTRF1, telomere bindin 99.6 1.3E-15 4.5E-20 90.5 4.1 46 54-99 1-52 (83)
50 2aje_A Telomere repeat-binding 99.6 2.7E-15 9.3E-20 92.6 4.8 56 49-104 9-75 (105)
51 2juh_A Telomere binding protei 99.5 1.9E-15 6.6E-20 95.3 3.3 52 47-98 11-68 (121)
52 2ltp_A Nuclear receptor corepr 99.3 4.2E-16 1.4E-20 93.9 0.0 47 2-49 17-63 (89)
53 1x58_A Hypothetical protein 49 99.5 9.7E-15 3.3E-19 81.6 5.6 49 51-99 6-58 (62)
54 2cjj_A Radialis; plant develop 99.5 2.5E-14 8.5E-19 86.6 5.7 50 52-101 7-61 (93)
55 2roh_A RTBP1, telomere binding 99.5 1.3E-14 4.3E-19 91.7 4.3 49 50-98 28-82 (122)
56 2cjj_A Radialis; plant develop 99.5 2.8E-14 9.6E-19 86.4 5.6 46 2-47 9-57 (93)
57 1ign_A Protein (RAP1); RAP1,ye 99.5 1.9E-14 6.6E-19 99.5 4.5 54 49-102 4-64 (246)
58 2eqr_A N-COR1, N-COR, nuclear 99.4 4.7E-13 1.6E-17 75.2 6.1 46 1-47 12-57 (61)
59 1x58_A Hypothetical protein 49 99.4 3E-13 1E-17 75.6 4.7 46 2-48 9-57 (62)
60 2eqr_A N-COR1, N-COR, nuclear 99.4 1.1E-12 3.7E-17 73.7 5.0 47 52-98 11-58 (61)
61 2cqq_A RSGI RUH-037, DNAJ homo 99.3 8.3E-12 2.8E-16 72.2 5.0 50 50-99 5-58 (72)
62 1wgx_A KIAA1903 protein; MYB D 99.2 2.8E-11 9.7E-16 69.9 6.8 46 3-48 10-58 (73)
63 3hm5_A DNA methyltransferase 1 99.2 1.8E-11 6.1E-16 73.8 6.0 62 38-103 19-86 (93)
64 2cqq_A RSGI RUH-037, DNAJ homo 99.2 3.7E-11 1.3E-15 69.4 5.6 46 2-48 9-57 (72)
65 2xag_B REST corepressor 1; ami 99.1 2.3E-11 7.9E-16 91.7 3.9 46 54-99 381-427 (482)
66 2iw5_B Protein corest, REST co 99.1 4.1E-11 1.4E-15 82.3 4.0 49 52-100 132-181 (235)
67 2iw5_B Protein corest, REST co 99.1 1.4E-10 4.8E-15 79.7 6.4 46 2-48 134-179 (235)
68 1fex_A TRF2-interacting telome 99.1 9.8E-11 3.4E-15 65.2 4.4 47 2-48 3-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 99.1 1.1E-10 3.9E-15 67.4 4.7 48 52-99 7-59 (73)
70 1ofc_X ISWI protein; nuclear p 99.0 2E-09 6.9E-14 77.2 9.7 101 1-102 110-278 (304)
71 4eef_G F-HB80.4, designed hema 98.8 3.8E-10 1.3E-14 64.8 0.2 42 3-44 22-66 (74)
72 4eef_G F-HB80.4, designed hema 98.8 2.2E-09 7.4E-14 61.6 1.9 43 52-94 19-66 (74)
73 2yqk_A Arginine-glutamic acid 98.7 3.1E-08 1.1E-12 55.6 5.5 44 2-46 10-54 (63)
74 3hm5_A DNA methyltransferase 1 98.7 3.7E-08 1.3E-12 59.3 5.9 46 2-48 31-81 (93)
75 1fex_A TRF2-interacting telome 98.7 2.1E-08 7.2E-13 55.6 3.9 46 53-98 2-58 (59)
76 2yqk_A Arginine-glutamic acid 98.7 5.7E-08 1.9E-12 54.6 5.6 49 49-97 5-55 (63)
77 2crg_A Metastasis associated p 98.7 7E-08 2.4E-12 55.3 5.9 44 2-46 9-53 (70)
78 4a69_C Nuclear receptor corepr 98.6 1.1E-07 3.7E-12 57.5 5.9 44 2-46 44-87 (94)
79 2xag_B REST corepressor 1; ami 98.6 7.8E-08 2.7E-12 72.6 6.3 45 2-47 381-425 (482)
80 2lr8_A CAsp8-associated protei 98.0 7.9E-09 2.7E-13 58.3 0.0 48 55-102 16-66 (70)
81 1ug2_A 2610100B20RIK gene prod 98.5 1.5E-07 5E-12 56.0 4.8 48 55-102 35-86 (95)
82 4iej_A DNA methyltransferase 1 98.5 4.7E-07 1.6E-11 54.3 6.3 59 42-104 23-87 (93)
83 2y9y_A Imitation switch protei 98.4 3.3E-06 1.1E-10 61.9 10.6 101 1-102 123-294 (374)
84 4a69_C Nuclear receptor corepr 98.4 5E-07 1.7E-11 54.5 4.7 44 53-96 43-87 (94)
85 2crg_A Metastasis associated p 98.3 1E-06 3.4E-11 50.4 5.2 45 52-96 7-53 (70)
86 4b4c_A Chromodomain-helicase-D 98.3 9.4E-06 3.2E-10 55.0 10.2 99 2-100 8-197 (211)
87 1ug2_A 2610100B20RIK gene prod 98.2 4E-06 1.4E-10 49.8 6.3 46 2-47 34-81 (95)
88 2ebi_A DNA binding protein GT- 98.1 2.4E-06 8.2E-11 50.4 3.1 50 52-101 3-67 (86)
89 2lr8_A CAsp8-associated protei 97.3 5.6E-07 1.9E-11 50.7 0.0 46 2-48 15-62 (70)
90 2ebi_A DNA binding protein GT- 98.0 4.7E-06 1.6E-10 49.2 3.8 46 2-47 5-63 (86)
91 4iej_A DNA methyltransferase 1 97.8 4.7E-05 1.6E-09 45.6 5.9 44 3-47 32-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 97.1 0.0024 8.3E-08 35.5 6.4 45 2-46 8-56 (64)
93 2xb0_X Chromo domain-containin 97.0 0.00063 2.2E-08 48.0 3.9 28 2-29 169-196 (270)
94 4b4c_A Chromodomain-helicase-D 96.8 0.0012 4.2E-08 44.5 3.9 27 3-29 136-162 (211)
95 1ofc_X ISWI protein; nuclear p 96.4 0.0046 1.6E-07 44.3 5.0 46 3-48 214-274 (304)
96 1irz_A ARR10-B; helix-turn-hel 96.3 0.014 4.9E-07 32.4 5.6 48 51-98 5-58 (64)
97 2xb0_X Chromo domain-containin 94.6 0.018 6E-07 40.6 2.3 35 2-36 4-42 (270)
98 2y9y_A Imitation switch protei 94.1 0.094 3.2E-06 38.5 5.3 45 3-47 230-289 (374)
99 2rq5_A Protein jumonji; develo 91.3 0.29 1E-05 30.3 4.1 56 11-69 46-113 (121)
100 2li6_A SWI/SNF chromatin-remod 90.8 0.24 8.2E-06 30.3 3.4 39 11-49 53-98 (116)
101 2jrz_A Histone demethylase jar 87.6 1.4 4.8E-05 26.8 5.2 39 11-49 44-93 (117)
102 2lm1_A Lysine-specific demethy 87.0 0.85 2.9E-05 27.2 3.8 39 11-49 48-97 (107)
103 1ig6_A MRF-2, modulator recogn 86.8 0.69 2.4E-05 27.7 3.4 39 11-49 37-87 (107)
104 2jxj_A Histone demethylase jar 85.8 1.4 4.6E-05 25.8 4.2 39 11-49 40-89 (96)
105 1kkx_A Transcription regulator 85.2 0.49 1.7E-05 29.3 2.1 39 11-49 52-97 (123)
106 2cxy_A BAF250B subunit, HBAF25 85.0 2.2 7.4E-05 26.3 5.1 39 11-49 55-104 (125)
107 2p1m_A SKP1-like protein 1A; F 84.4 1.9 6.5E-05 27.5 4.8 36 24-66 118-153 (160)
108 2jvw_A Uncharacterized protein 83.9 1.6 5.3E-05 25.4 3.7 48 9-67 18-71 (88)
109 2eqy_A RBP2 like, jumonji, at 83.4 2.5 8.7E-05 25.9 4.9 39 11-49 46-95 (122)
110 2o8x_A Probable RNA polymerase 83.2 1.7 5.7E-05 23.1 3.6 45 55-100 15-59 (70)
111 1c20_A DEAD ringer protein; DN 82.2 3.2 0.00011 25.6 5.0 39 11-49 56-106 (128)
112 1ku3_A Sigma factor SIGA; heli 81.2 2.3 7.8E-05 23.1 3.7 47 55-101 10-59 (73)
113 2kk0_A AT-rich interactive dom 80.4 8.2 0.00028 24.3 6.6 52 11-62 68-133 (145)
114 3v7d_A Suppressor of kinetocho 80.3 3.1 0.00011 26.9 4.7 35 24-65 126-160 (169)
115 2p7v_B Sigma-70, RNA polymeras 78.5 2.4 8.2E-05 22.6 3.2 31 71-101 24-54 (68)
116 2ast_A S-phase kinase-associat 76.9 3.4 0.00012 26.2 4.1 36 24-66 119-154 (159)
117 3hug_A RNA polymerase sigma fa 74.9 4.7 0.00016 22.8 3.9 38 64-101 45-82 (92)
118 1n00_A Annexin GH1; membrane-b 74.6 12 0.0004 26.6 6.7 100 3-104 15-141 (321)
119 1kkx_A Transcription regulator 74.5 3.4 0.00012 25.4 3.4 39 63-101 52-99 (123)
120 2li6_A SWI/SNF chromatin-remod 74.2 1.9 6.3E-05 26.2 2.1 39 63-101 53-100 (116)
121 3i4p_A Transcriptional regulat 73.9 3.3 0.00011 26.2 3.4 43 59-101 3-46 (162)
122 2q1z_A RPOE, ECF SIGE; ECF sig 72.9 5.7 0.0002 24.9 4.4 31 71-101 150-180 (184)
123 3i4p_A Transcriptional regulat 70.3 8.8 0.0003 24.1 4.8 89 7-96 3-123 (162)
124 1or7_A Sigma-24, RNA polymeras 66.7 8.7 0.0003 24.1 4.2 32 71-102 155-186 (194)
125 3e7l_A Transcriptional regulat 66.7 8.2 0.00028 20.3 3.5 35 59-93 19-53 (63)
126 1tty_A Sigma-A, RNA polymerase 66.5 8.5 0.00029 21.5 3.7 31 71-101 37-67 (87)
127 1x3u_A Transcriptional regulat 65.4 9 0.00031 20.6 3.6 44 56-101 17-60 (79)
128 1w3w_A Annexin A8; coagulation 65.3 34 0.0011 24.3 7.4 100 3-103 20-145 (327)
129 2hyv_A Annexin A2; calcium-bin 65.1 26 0.0009 24.6 6.8 100 4-104 2-127 (308)
130 3ulq_B Transcriptional regulat 62.4 17 0.00059 20.6 4.6 46 53-100 27-72 (90)
131 3c57_A Two component transcrip 62.2 15 0.0005 20.9 4.3 46 55-102 27-72 (95)
132 1xsv_A Hypothetical UPF0122 pr 61.8 14 0.00047 21.9 4.2 44 56-100 26-69 (113)
133 3mzy_A RNA polymerase sigma-H 61.8 10 0.00036 22.8 3.8 32 70-101 122-153 (164)
134 2zhj_A Annexin A4; zynogen gra 61.5 24 0.00083 24.9 6.1 100 3-103 16-141 (322)
135 3cz6_A DNA-binding protein RAP 59.9 6.1 0.00021 25.7 2.4 28 38-65 98-126 (168)
136 1je8_A Nitrate/nitrite respons 58.8 17 0.00057 20.1 4.0 45 54-100 20-64 (82)
137 1ntc_A Protein (nitrogen regul 58.6 17 0.00057 20.6 4.0 36 58-93 50-85 (91)
138 1yii_A Annexin A5, annexin V, 58.6 25 0.00085 24.8 5.7 100 4-104 14-139 (320)
139 1axn_A Annexin III; annexin fa 57.2 36 0.0012 24.0 6.4 101 3-104 17-143 (323)
140 1rp3_A RNA polymerase sigma fa 56.7 16 0.00054 23.6 4.2 31 71-101 202-232 (239)
141 1fse_A GERE; helix-turn-helix 56.1 20 0.00069 18.7 4.6 45 54-100 10-54 (74)
142 2e1c_A Putative HTH-type trans 55.2 29 0.00099 22.0 5.2 41 7-48 27-67 (171)
143 2dbb_A Putative HTH-type trans 54.9 18 0.0006 22.1 4.0 42 59-100 9-51 (151)
144 2e1c_A Putative HTH-type trans 53.7 14 0.00048 23.5 3.5 42 59-100 27-69 (171)
145 1p4w_A RCSB; solution structur 53.5 30 0.001 20.0 4.9 46 53-100 32-77 (99)
146 2rnj_A Response regulator prot 52.8 18 0.00062 20.2 3.5 45 55-101 29-73 (91)
147 2jpc_A SSRB; DNA binding prote 52.6 21 0.00073 17.9 3.6 38 63-101 5-42 (61)
148 1s7o_A Hypothetical UPF0122 pr 52.4 23 0.00077 21.0 4.0 45 55-100 22-66 (113)
149 1dm5_A Annexin XII E105K mutan 52.2 45 0.0016 23.4 6.2 101 3-104 11-137 (315)
150 2k0m_A Uncharacterized protein 50.7 15 0.00052 21.9 3.0 40 34-73 15-54 (104)
151 4ayb_F DNA-directed RNA polyme 49.3 33 0.0011 20.5 4.5 65 1-71 44-110 (113)
152 1y66_A Engrailed homeodomain; 48.4 16 0.00053 18.3 2.3 21 1-21 1-21 (52)
153 1hm6_A Annexin 1; phospholipid 47.9 30 0.001 24.8 4.7 100 3-103 41-166 (346)
154 2cg4_A Regulatory protein ASNC 44.2 30 0.001 21.1 3.8 41 60-100 9-50 (152)
155 3k6g_A Telomeric repeat-bindin 43.7 34 0.0012 20.5 3.7 63 9-73 14-86 (111)
156 1umq_A Photosynthetic apparatu 42.7 23 0.00078 20.0 2.8 35 58-92 40-74 (81)
157 2dbb_A Putative HTH-type trans 40.6 60 0.002 19.6 5.5 84 7-91 9-122 (151)
158 2cyy_A Putative HTH-type trans 38.8 65 0.0022 19.5 5.5 38 8-46 8-45 (151)
159 1qgp_A Protein (double strande 38.5 23 0.0008 19.5 2.4 43 57-99 12-58 (77)
160 2p5v_A Transcriptional regulat 38.3 69 0.0023 19.7 5.2 40 7-47 10-49 (162)
161 2of5_A Death domain-containing 38.2 27 0.00092 21.0 2.8 37 50-89 16-52 (114)
162 2ia0_A Putative HTH-type trans 37.9 74 0.0025 20.0 5.2 40 7-47 17-56 (171)
163 1eto_A FIS, factor for inversi 37.7 41 0.0014 19.5 3.4 35 58-92 57-91 (98)
164 2o71_A Death domain-containing 37.4 29 0.001 20.8 2.9 34 53-89 19-52 (115)
165 2pn6_A ST1022, 150AA long hypo 37.0 62 0.0021 19.5 4.5 39 8-47 4-42 (150)
166 2of5_H Leucine-rich repeat and 36.4 31 0.0011 20.6 2.9 28 62-89 14-41 (118)
167 2hyv_A Annexin A2; calcium-bin 36.3 51 0.0017 23.1 4.3 46 56-101 2-52 (308)
168 3t72_q RNA polymerase sigma fa 36.3 59 0.002 18.8 4.0 30 72-101 39-68 (99)
169 3clo_A Transcriptional regulat 35.7 38 0.0013 22.7 3.5 46 55-102 197-242 (258)
170 2v79_A DNA replication protein 34.9 77 0.0026 19.3 4.6 45 56-100 30-79 (135)
171 2lfw_A PHYR sigma-like domain; 34.1 16 0.00053 22.5 1.3 33 69-101 106-138 (157)
172 2yqf_A Ankyrin-1; death domain 33.5 34 0.0012 20.2 2.7 33 57-89 14-46 (111)
173 1pdn_C Protein (PRD paired); p 32.4 71 0.0024 18.1 5.1 66 3-71 17-91 (128)
174 3h8k_B Autocrine motility fact 32.4 32 0.0011 15.5 1.8 10 56-65 1-10 (28)
175 1dw9_A Cyanate lyase; cyanate 31.4 40 0.0014 21.6 2.8 30 62-91 16-45 (156)
176 1tc3_C Protein (TC3 transposas 31.3 44 0.0015 15.3 4.3 38 55-93 5-42 (51)
177 1m9i_A Annexin VI; calcium-bin 30.8 1.1E+02 0.0038 24.0 5.8 101 3-104 361-487 (672)
178 2zhj_A Annexin A4; zynogen gra 30.7 64 0.0022 22.7 4.1 49 55-103 16-69 (322)
179 2hzd_A Transcriptional enhance 29.6 82 0.0028 17.9 4.5 48 52-99 5-74 (82)
180 1axn_A Annexin III; annexin fa 29.5 68 0.0023 22.6 4.1 48 55-102 17-69 (323)
181 2cg4_A Regulatory protein ASNC 29.4 96 0.0033 18.7 5.5 38 8-46 9-46 (152)
182 1qbj_A Protein (double-strande 28.9 60 0.0021 18.1 3.1 41 58-98 9-53 (81)
183 1l0o_C Sigma factor; bergerat 28.5 12 0.00041 24.2 0.0 28 72-99 214-241 (243)
184 2rr9_C Putative uncharacterize 28.0 49 0.0017 16.4 2.2 13 6-18 26-38 (46)
185 1i1g_A Transcriptional regulat 27.3 1E+02 0.0034 18.2 5.1 38 8-46 5-42 (141)
186 3a1q_C Ubiquitin interaction m 27.0 53 0.0018 16.2 2.2 13 6-18 29-41 (45)
187 2cfx_A HTH-type transcriptiona 24.8 1.2E+02 0.004 18.1 5.2 39 8-47 6-44 (144)
188 1wxp_A THO complex subunit 1; 24.1 73 0.0025 18.6 3.0 26 64-89 21-46 (110)
189 1l3l_A Transcriptional activat 23.7 1.2E+02 0.0041 19.7 4.3 45 54-100 172-216 (234)
190 1m9i_A Annexin VI; calcium-bin 23.1 1.4E+02 0.0047 23.5 5.0 101 3-104 18-144 (672)
191 3b73_A PHIH1 repressor-like pr 23.0 1.2E+02 0.0043 17.8 4.4 47 3-49 9-56 (111)
192 1g2h_A Transcriptional regulat 22.7 75 0.0026 16.3 2.6 37 55-92 17-53 (61)
193 1ngr_A P75 low affinity neurot 22.1 25 0.00086 19.9 0.6 27 58-89 12-38 (85)
194 3szt_A QCSR, quorum-sensing co 21.7 1.3E+02 0.0045 19.7 4.2 47 52-100 172-218 (237)
195 1go3_F DNA-directed RNA polyme 20.0 1.5E+02 0.005 17.4 5.4 60 2-71 45-106 (107)
No 1
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=2.6e-40 Score=206.76 Aligned_cols=102 Identities=25% Similarity=0.554 Sum_probs=98.3
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCCcccCCCHHHHHHHHHHHhhCCcchhcccc-
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAP- 80 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~- 80 (108)
.+||+|||++|+++|..||.++|..||..||+||+.||++||.++|+|++++++||+|||..|+++|..||++|+.||+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~ 81 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISKF 81 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 6899999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhHHHhh
Q psy15548 81 IIGRTAAQCLERYEFLLYRARRK 103 (108)
Q Consensus 81 ~~gRt~~q~~~r~~~~~~~~~~~ 103 (108)
|||||+.||++||..++++..+.
T Consensus 82 l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 82 LKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHhhHHHh
Confidence 99999999999999999886553
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=8.3e-40 Score=203.67 Aligned_cols=99 Identities=32% Similarity=0.569 Sum_probs=95.0
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCCcccCCCHHHHHHHHHHHhhCCcchhcccc-
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAP- 80 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~- 80 (108)
.|||+|||++|+++|..||.++|..||..||+||+.||++||.++|+|.+++++||+|||..|+++|..||++|+.||+
T Consensus 5 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~ 84 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKL 84 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5899999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhHH
Q psy15548 81 IIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 81 ~~gRt~~q~~~r~~~~~~~~ 100 (108)
|||||+.||++||..++++.
T Consensus 85 l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 85 LPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp CTTCCHHHHHHHHHHHTC--
T ss_pred cCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999998764
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=9.2e-40 Score=210.68 Aligned_cols=103 Identities=31% Similarity=0.596 Sum_probs=99.7
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCCcccCCCHHHHHHHHHHHhhCCcchhcccc-
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAP- 80 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~- 80 (108)
.|||+|||++|+.+|..||.++|..||..||+||+.||++||.++|+|.+++++||+|||..|+++|..||++|+.||+
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~ 82 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAKL 82 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 6999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhHHHhhh
Q psy15548 81 IIGRTAAQCLERYEFLLYRARRKA 104 (108)
Q Consensus 81 ~~gRt~~q~~~r~~~~~~~~~~~~ 104 (108)
|+|||+.||++||++++++.++.+
T Consensus 83 l~gRt~~~~k~rw~~~l~~~~~~~ 106 (131)
T 3zqc_A 83 IPGRTDNAIKNRWNSSISKRISTN 106 (131)
T ss_dssp STTCCHHHHHHHHHHTTGGGCCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999987654
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=1.9e-38 Score=203.40 Aligned_cols=98 Identities=35% Similarity=0.587 Sum_probs=95.2
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCCcccCCCHHHHHHHHHHHhhCCcchhcccc-
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAP- 80 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~- 80 (108)
.+||+|||++|+++|..||. +|..||..||+|++.||++||.++|+|.+++++||+|||..|+++|.+||++|+.||+
T Consensus 12 ~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~ 90 (126)
T 3osg_A 12 QKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWAIIAKF 90 (126)
T ss_dssp CCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 58999999999999999997 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhHH
Q psy15548 81 IIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 81 ~~gRt~~q~~~r~~~~~~~~ 100 (108)
++|||+.+|++||..++++.
T Consensus 91 l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 91 FPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp STTCCHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999998764
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=3e-38 Score=202.83 Aligned_cols=99 Identities=32% Similarity=0.581 Sum_probs=95.3
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCCcccCCCHHHHHHHHHHHhhCCcchhcccc-
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAP- 80 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~- 80 (108)
.|||+|||+.|+++|..||.++|..||..||+||+.||++||.++|+|.+++++||+|||..|++++.+||++|+.||+
T Consensus 28 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~ 107 (128)
T 1h8a_C 28 GPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKL 107 (128)
T ss_dssp SCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 5899999999999999999878999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhHH
Q psy15548 81 IIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 81 ~~gRt~~q~~~r~~~~~~~~ 100 (108)
+||||+.+|++||..++++.
T Consensus 108 l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 108 LPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp STTCCHHHHHHHHHTTTTC-
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999988764
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=1.1e-35 Score=196.99 Aligned_cols=99 Identities=32% Similarity=0.569 Sum_probs=95.3
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCCcccCCCHHHHHHHHHHHhhCCcchhcccc-
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAP- 80 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~- 80 (108)
.|||+|||+.|+.+|..||.++|..||..||+||+.||+.||.++|+|.+++++||++||..|++++..||++|+.||+
T Consensus 59 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~ 138 (159)
T 1h89_C 59 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKL 138 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTT
T ss_pred CCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5899999999999999999878999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhHH
Q psy15548 81 IIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 81 ~~gRt~~q~~~r~~~~~~~~ 100 (108)
|||||+.+|++||..++++.
T Consensus 139 l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 139 LPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp STTCCHHHHHHHHHTTTCC-
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999988753
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=8.5e-37 Score=202.33 Aligned_cols=103 Identities=32% Similarity=0.606 Sum_probs=63.6
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCCcccCCCHHHHHHHHHHHhhCCc-chhcccc
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPT-QWRTIAP 80 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~~v~~~g~-~W~~Ia~ 80 (108)
.+||+|||+.|.++|..||.++|..||..||+|++.||++||.++|+|++++++||++||..|+.+|..||. +|..||.
T Consensus 7 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~ 86 (159)
T 1h89_C 7 TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK 86 (159)
T ss_dssp ------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHH
Confidence 489999999999999999988999999999999999999999999999999999999999999999999995 7999999
Q ss_pred -ccCCCHHHHHHHHHHHHhHHHhhh
Q psy15548 81 -IIGRTAAQCLERYEFLLYRARRKA 104 (108)
Q Consensus 81 -~~gRt~~q~~~r~~~~~~~~~~~~ 104 (108)
++|||+.||++||.++++|.++++
T Consensus 87 ~l~~Rt~~qcr~Rw~~~l~p~~~~~ 111 (159)
T 1h89_C 87 HLKGRIGKQCRERWHNHLNPEVKKT 111 (159)
T ss_dssp TSTTCCHHHHHHHHHHTTCTTSCCS
T ss_pred HcCCCCHHHHHHHHHHHhCcccccc
Confidence 999999999999999999877654
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.93 E-value=2.6e-27 Score=151.81 Aligned_cols=78 Identities=28% Similarity=0.661 Sum_probs=53.7
Q ss_pred HHHHhCCCCHHHHHHHhhhhcCCCCcccCCCHHHHHHHHHHHhhCCc-chhcccc-ccCCCHHHHHHHHHHHHhHHHhhh
Q psy15548 27 IASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLERYEFLLYRARRKA 104 (108)
Q Consensus 27 Ia~~~~~R~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~~v~~~g~-~W~~Ia~-~~gRt~~q~~~r~~~~~~~~~~~~ 104 (108)
||+.||+||+.||+.||.++|+|++++++||+|||+.|+++|..||. +|..||. ++|||+.||++||.++++|.++++
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~ 80 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT 80 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence 78999999999999999999999999999999999999999999995 7999999 999999999999999999877654
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=9.1e-26 Score=130.94 Aligned_cols=60 Identities=80% Similarity=1.207 Sum_probs=58.3
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCCcccCCCHHHH
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREED 61 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~~Wt~eEd 61 (108)
.+||+|||++|+++|.+||.++|..||..||+||+.||+.||.++|+|.+++++||++||
T Consensus 10 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 10 GVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 489999999999999999977999999999999999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.86 E-value=5.6e-22 Score=137.08 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=88.4
Q ss_pred CCCcHHHHHHHHHHHHHhCCC-----CHHHHHHHhCCCCHHHHHHHhhhhcCCCCc------------------------
Q psy15548 2 LKTMTIVDEILKAAVMKYGKN-----QWSRIASLLHRKSAKQCKARWFEWLDPSIK------------------------ 52 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~-----~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~------------------------ 52 (108)
.+||+|||+.|+++|.++|.. .|++||..|||||+.||+.||+.+|.+.++
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ikis~ 88 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIKTKV 88 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBCEESS
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCceeeec
Confidence 489999999999999999863 299999999999999999999999998886
Q ss_pred -----ccCCCHHHHHHHHHHHhh-C--------------------------------Cc---------------------
Q psy15548 53 -----KTEWSREEDEKLLHLAKL-M--------------------------------PT--------------------- 73 (108)
Q Consensus 53 -----~~~Wt~eEd~~L~~~v~~-~--------------------------------g~--------------------- 73 (108)
+..||.+||-.|...+.+ + |.
T Consensus 89 lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp 168 (246)
T 1ign_A 89 LPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGP 168 (246)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCCCCCC
T ss_pred cCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccccCc
Confidence 789999999999998865 1 11
Q ss_pred ----chhcccc-ccCCCHHHHHHHHHHHHhHH
Q psy15548 74 ----QWRTIAP-IIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 74 ----~W~~Ia~-~~gRt~~q~~~r~~~~~~~~ 100 (108)
.|..||+ +|+||..+.|+||..+++..
T Consensus 169 ~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 169 IAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred chHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999 99999999999999888765
No 11
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=7.3e-22 Score=113.19 Aligned_cols=60 Identities=77% Similarity=1.128 Sum_probs=57.3
Q ss_pred hcCCCCcccCCCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHHHhhhh
Q psy15548 46 WLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRARRKAV 105 (108)
Q Consensus 46 ~l~~~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~~~~~ 105 (108)
+|+|.+++++||+|||.+|++++..+|.+|..||.++|||+.||++||.+++++.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhcccCcCHHHHHHHHHHHhChHhcCCC
Confidence 689999999999999999999999999999999999999999999999999999998763
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.84 E-value=3.4e-21 Score=121.70 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=72.1
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHh----CCCCHHHHHHHhhhhcC-----CCCccc-CCCHHHHHHHHHHHhhC
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLL----HRKSAKQCKARWFEWLD-----PSIKKT-EWSREEDEKLLHLAKLM 71 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~----~~R~~~qc~~rw~~~l~-----~~~~~~-~Wt~eEd~~L~~~v~~~ 71 (108)
.|||+|||+.|+++|++||.++|+.|+..+ ++||..+|++||++++. |.++++ +|+++|+..|+.+...+
T Consensus 18 ~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h~~~ 97 (121)
T 2juh_A 18 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYW 97 (121)
T ss_dssp CCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999985 89999999999999987 888888 99999999999999999
Q ss_pred Ccchhcc
Q psy15548 72 PTQWRTI 78 (108)
Q Consensus 72 g~~W~~I 78 (108)
|++|..-
T Consensus 98 gn~~~~~ 104 (121)
T 2juh_A 98 SQQQGKQ 104 (121)
T ss_dssp HHHHCCS
T ss_pred ccchhcc
Confidence 9999773
No 13
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-21 Score=113.25 Aligned_cols=60 Identities=22% Similarity=0.292 Sum_probs=46.7
Q ss_pred HHHHHhhhhcCCCCcccCCCHHHHHHHHHHHhhCCcchhcccc-ccCCCHHHHHHHHHHHHh
Q psy15548 38 QCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLERYEFLLY 98 (108)
Q Consensus 38 qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~-~~gRt~~q~~~r~~~~~~ 98 (108)
...-||.++|+|++++++||+|||++|++++.++|++|+.||+ + |||+.||++||..+.+
T Consensus 8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp -----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 4456899999999999999999999999999999999999999 8 9999999999987543
No 14
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.83 E-value=9.5e-21 Score=103.73 Aligned_cols=49 Identities=33% Similarity=0.575 Sum_probs=47.1
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCC
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPS 50 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~ 50 (108)
.+||+|||++|+++|..||.++|..||..||+||+.||+.||.++|+|+
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 5899999999999999999889999999999999999999999999984
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=1.6e-20 Score=105.69 Aligned_cols=51 Identities=29% Similarity=0.558 Sum_probs=48.7
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCCc
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIK 52 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~ 52 (108)
.+||+|||++|+++|.+||.++|..||..||+||+.||++||.++|+|.++
T Consensus 9 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 9 VKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 589999999999999999977999999999999999999999999999865
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.83 E-value=1.1e-20 Score=103.57 Aligned_cols=49 Identities=37% Similarity=0.609 Sum_probs=46.9
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCC
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPS 50 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~ 50 (108)
.+||+|||++|+++|..||.++|..||..||+||+.||+.||.++|+|+
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 5899999999999999999878999999999999999999999999984
No 17
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.83 E-value=1.9e-20 Score=118.45 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=67.9
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHh----CCCCHHHHHHHhhhhc-----CCCCcccCCCHHH-HHHHHHHHhhC
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLL----HRKSAKQCKARWFEWL-----DPSIKKTEWSREE-DEKLLHLAKLM 71 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~----~~R~~~qc~~rw~~~l-----~~~~~~~~Wt~eE-d~~L~~~v~~~ 71 (108)
.|||+|||+.|+++|++||.++|+.|+..+ ++||..+|++||++++ +|.++++.|+++| +..|+++...+
T Consensus 32 ~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~~h~~~ 111 (122)
T 2roh_A 32 RPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYW 111 (122)
T ss_dssp CCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999874 7999999999999998 8999999999999 88899999888
Q ss_pred Ccc
Q psy15548 72 PTQ 74 (108)
Q Consensus 72 g~~ 74 (108)
|+.
T Consensus 112 g~~ 114 (122)
T 2roh_A 112 SVD 114 (122)
T ss_dssp HSS
T ss_pred hhH
Confidence 863
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=4.1e-21 Score=108.13 Aligned_cols=55 Identities=31% Similarity=0.512 Sum_probs=51.4
Q ss_pred CCCCcccCCCHHHHHHHHHHHhhCC-cchhcccc-ccCCCHHHHHHHHHHHHhHHHh
Q psy15548 48 DPSIKKTEWSREEDEKLLHLAKLMP-TQWRTIAP-IIGRTAAQCLERYEFLLYRARR 102 (108)
Q Consensus 48 ~~~~~~~~Wt~eEd~~L~~~v~~~g-~~W~~Ia~-~~gRt~~q~~~r~~~~~~~~~~ 102 (108)
+|.+++++||+|||++|+++|.+|| ++|..||. |+|||+.||++||.++++|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5778999999999999999999999 69999999 9999999999999999998753
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.81 E-value=3e-20 Score=107.30 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=52.6
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhC--CCCHHHHHHHhhhhcCCCCcccCCC
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLH--RKSAKQCKARWFEWLDPSIKKTEWS 57 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~--~R~~~qc~~rw~~~l~~~~~~~~Wt 57 (108)
.+||+|||+.|+++|.+||.++|..||..|+ +||+.||++||.++|+|.+.++..+
T Consensus 11 ~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 11 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 5899999999999999999889999999999 9999999999999999999887653
No 20
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.81 E-value=2.4e-20 Score=108.55 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=55.3
Q ss_pred cCCCCcccCCCHHHHHHHHHHHhhCCcchhcccc-ccCCCHHHHHHHHHHHHhHHHhhhh
Q psy15548 47 LDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLERYEFLLYRARRKAV 105 (108)
Q Consensus 47 l~~~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~-~~gRt~~q~~~r~~~~~~~~~~~~~ 105 (108)
.+|.+++++||+|||++|+++|..||.+|..||. |+|||+.||++||+.++++..+.++
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g~ 62 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGL 62 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCT
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999999999999999999 9999999999999999999877654
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.81 E-value=3.9e-20 Score=105.33 Aligned_cols=51 Identities=27% Similarity=0.399 Sum_probs=47.6
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhC--CCCHHHHHHHhhhhcCCCCc
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLH--RKSAKQCKARWFEWLDPSIK 52 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~--~R~~~qc~~rw~~~l~~~~~ 52 (108)
.+||+|||+.|+++|.+||.++|..||+.+| +||+.||++||++++.|+++
T Consensus 12 ~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 5899999999999999999889999999976 99999999999999988764
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.81 E-value=1.9e-20 Score=102.50 Aligned_cols=49 Identities=43% Similarity=0.724 Sum_probs=45.5
Q ss_pred CcccCCCHHHHHHHHHHHhhCCc-chhcccc-ccCCCHHHHHHHHHHHHhH
Q psy15548 51 IKKTEWSREEDEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLERYEFLLYR 99 (108)
Q Consensus 51 ~~~~~Wt~eEd~~L~~~v~~~g~-~W~~Ia~-~~gRt~~q~~~r~~~~~~~ 99 (108)
+++++||+|||..|+++|..||. +|..||. |+|||+.||++||.++++|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 36789999999999999999997 9999999 9999999999999999987
No 23
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2e-20 Score=108.29 Aligned_cols=57 Identities=30% Similarity=0.380 Sum_probs=53.5
Q ss_pred CCCCcccCCCHHHHHHHHHHHhhCC-cchhcccc-ccCCCHHHHHHHHHHHHhHHHhhh
Q psy15548 48 DPSIKKTEWSREEDEKLLHLAKLMP-TQWRTIAP-IIGRTAAQCLERYEFLLYRARRKA 104 (108)
Q Consensus 48 ~~~~~~~~Wt~eEd~~L~~~v~~~g-~~W~~Ia~-~~gRt~~q~~~r~~~~~~~~~~~~ 104 (108)
.|.+++++||++||.+|+++|..|| ++|..||. |+|||+.||++||.++|+|.++++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~ 62 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKT 62 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCC
Confidence 4678899999999999999999999 79999999 999999999999999999988765
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.80 E-value=3.1e-20 Score=101.69 Aligned_cols=49 Identities=35% Similarity=0.684 Sum_probs=46.2
Q ss_pred CcccCCCHHHHHHHHHHHhhCCc-chhcccc-ccCCCHHHHHHHHHHHHhH
Q psy15548 51 IKKTEWSREEDEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLERYEFLLYR 99 (108)
Q Consensus 51 ~~~~~Wt~eEd~~L~~~v~~~g~-~W~~Ia~-~~gRt~~q~~~r~~~~~~~ 99 (108)
+++++||+|||..|+++|..||. +|..||. ++|||+.||++||.++|+|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999996 7999999 9999999999999999987
No 25
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=1.6e-19 Score=101.63 Aligned_cols=50 Identities=18% Similarity=0.385 Sum_probs=47.0
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCC
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSI 51 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~ 51 (108)
.+||+|||++|+++|..||.++|..||..||+||+.||+.||.++|.+..
T Consensus 9 ~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 9 PSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp SSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence 48999999999999999997799999999999999999999999998753
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.78 E-value=3.5e-19 Score=97.86 Aligned_cols=47 Identities=26% Similarity=0.413 Sum_probs=44.8
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhC--CCCHHHHHHHhhhhcC
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLH--RKSAKQCKARWFEWLD 48 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~--~R~~~qc~~rw~~~l~ 48 (108)
.|||+|||+.|+++|..||.++|+.||..|| +||+.||++||.+++.
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999889999999999 9999999999999865
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2e-19 Score=101.24 Aligned_cols=53 Identities=19% Similarity=0.367 Sum_probs=48.9
Q ss_pred CCCCcccCCCHHHHHHHHHHHhhCC-cchhcccc-ccCCCHHHHHHHHHHHHhHH
Q psy15548 48 DPSIKKTEWSREEDEKLLHLAKLMP-TQWRTIAP-IIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 48 ~~~~~~~~Wt~eEd~~L~~~v~~~g-~~W~~Ia~-~~gRt~~q~~~r~~~~~~~~ 100 (108)
++.+.+++||++||.+|+++|..|| ++|..||+ ++|||+.||++||.+++.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 4678899999999999999999999 79999999 99999999999999988653
No 28
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.78 E-value=1.3e-19 Score=104.62 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=52.8
Q ss_pred cCCCCcccCCCHHHHHHHHHHHhhCC-cchhcccc-cc--CCCHHHHHHHHHHHHhHHHhhh
Q psy15548 47 LDPSIKKTEWSREEDEKLLHLAKLMP-TQWRTIAP-II--GRTAAQCLERYEFLLYRARRKA 104 (108)
Q Consensus 47 l~~~~~~~~Wt~eEd~~L~~~v~~~g-~~W~~Ia~-~~--gRt~~q~~~r~~~~~~~~~~~~ 104 (108)
.++...+++||+|||+.|+++|..|| ++|..||. ++ |||+.||++||.+++++.+.+.
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 35667889999999999999999999 69999999 98 9999999999999999987654
No 29
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.78 E-value=4.6e-19 Score=99.06 Aligned_cols=46 Identities=15% Similarity=0.313 Sum_probs=43.6
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhC-CCCHHHHHHHhhhhc
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWFEWL 47 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~-~R~~~qc~~rw~~~l 47 (108)
.+||+|||++|+++|++||.++|..||..|| +||+.||+.||.+++
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4899999999999999999779999999999 999999999999875
No 30
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-19 Score=104.99 Aligned_cols=59 Identities=25% Similarity=0.398 Sum_probs=54.8
Q ss_pred CCCCcccCCCHHHHHHHHHHHhhCC------cchhcccc-ccCCCHHHHHHHHHHHHhHHHhhhhh
Q psy15548 48 DPSIKKTEWSREEDEKLLHLAKLMP------TQWRTIAP-IIGRTAAQCLERYEFLLYRARRKAVQ 106 (108)
Q Consensus 48 ~~~~~~~~Wt~eEd~~L~~~v~~~g------~~W~~Ia~-~~gRt~~q~~~r~~~~~~~~~~~~~~ 106 (108)
+|.+.+++||+|||.+|+++|..|| .+|..||. |+|||+.||++||++++.+.++.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 5778899999999999999999999 79999999 99999999999999999998887754
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.77 E-value=3.4e-19 Score=97.90 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=44.4
Q ss_pred cccCCCHHHHHHHHHHHhhCC-cchhcccc-cc--CCCHHHHHHHHHHHHh
Q psy15548 52 KKTEWSREEDEKLLHLAKLMP-TQWRTIAP-II--GRTAAQCLERYEFLLY 98 (108)
Q Consensus 52 ~~~~Wt~eEd~~L~~~v~~~g-~~W~~Ia~-~~--gRt~~q~~~r~~~~~~ 98 (108)
++++||+|||+.|+++|..|| ++|..||. ++ |||+.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 368999999999999999999 69999999 88 9999999999999986
No 32
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.77 E-value=2e-19 Score=102.39 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=46.4
Q ss_pred CcccCCCHHHHHHHHHHHhhCC-cchhcccc-cc--CCCHHHHHHHHHHHHhHHH
Q psy15548 51 IKKTEWSREEDEKLLHLAKLMP-TQWRTIAP-II--GRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 51 ~~~~~Wt~eEd~~L~~~v~~~g-~~W~~Ia~-~~--gRt~~q~~~r~~~~~~~~~ 101 (108)
.++++||+|||+.|+++|.+|| ++|..||+ ++ |||+.||++||.+++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4678999999999999999999 59999998 65 9999999999999998865
No 33
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.75 E-value=1.8e-18 Score=96.64 Aligned_cols=50 Identities=22% Similarity=0.411 Sum_probs=45.5
Q ss_pred CCCCcccCCCHHHHHHHHHHHhhCC-cchhcccc-cc-CCCHHHHHHHHHHHH
Q psy15548 48 DPSIKKTEWSREEDEKLLHLAKLMP-TQWRTIAP-II-GRTAAQCLERYEFLL 97 (108)
Q Consensus 48 ~~~~~~~~Wt~eEd~~L~~~v~~~g-~~W~~Ia~-~~-gRt~~q~~~r~~~~~ 97 (108)
+..+.+++||++||.+|+++|.+|| ++|..||+ ++ |||+.||++||.+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3456688999999999999999999 89999999 88 899999999998764
No 34
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.74 E-value=1.5e-17 Score=98.96 Aligned_cols=68 Identities=15% Similarity=0.244 Sum_probs=58.4
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHH----hCCCCHHHHHHHhhhhc-----CCCCcc-cCCCHHHHHHHHHHHh
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASL----LHRKSAKQCKARWFEWL-----DPSIKK-TEWSREEDEKLLHLAK 69 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~----~~~R~~~qc~~rw~~~l-----~~~~~~-~~Wt~eEd~~L~~~v~ 69 (108)
-|||+|||+.|+++|++||.++|+.|+.. |++||+.+|++||++++ +|..++ .+.+++....++.+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999999999996 88999999999999987 565555 4777887787777653
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.3e-18 Score=99.61 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=48.6
Q ss_pred CCCcHHHHHHHHHHHHHhCC-----CCHHHHHHHhCCCCHHHHHHHhhhhcCCCCccc
Q psy15548 2 LKTMTIVDEILKAAVMKYGK-----NQWSRIASLLHRKSAKQCKARWFEWLDPSIKKT 54 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~-----~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~ 54 (108)
.+||+|||++|+++|..||. ++|..||.+||+||+.||+.||+++|.+.++.|
T Consensus 9 ~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp SCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999999995 699999999999999999999999998766554
No 36
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-18 Score=97.94 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=46.7
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCCccc
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKT 54 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~ 54 (108)
.+||+|||++|+++|..||. +|..||. ++|||+.||+.||.++|+|.++++
T Consensus 10 ~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 10 TEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 58999999999999999997 9999999 889999999999999998865543
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.70 E-value=1.4e-17 Score=96.73 Aligned_cols=51 Identities=20% Similarity=0.437 Sum_probs=46.7
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCCcc
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKK 53 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~ 53 (108)
.+||+|||++|+++|..||. +|..||.+||+||+.||+.||..++.+..+.
T Consensus 10 ~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 10 VKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999997 9999999999999999999999988765443
No 38
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.52 E-value=1.9e-18 Score=104.25 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=51.5
Q ss_pred hcCCCCcccCCCHHHHHHHHHHHhhCCcchhcccc-ccCCCHHHHHHHHHHHHhHH
Q psy15548 46 WLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 46 ~l~~~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~-~~gRt~~q~~~r~~~~~~~~ 100 (108)
.++|++..++||++||.+|+++|..||.+|..||. ++|||+.||++||.+++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 45778899999999999999999999999999999 99999999999999998765
No 39
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.68 E-value=1.6e-17 Score=105.90 Aligned_cols=57 Identities=28% Similarity=0.419 Sum_probs=52.3
Q ss_pred CCCCcccCCCHHHHHHHHHHHhhCCcchhcccc-ccCCCHHHHHHHHHHHHhHHHhhh
Q psy15548 48 DPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLERYEFLLYRARRKA 104 (108)
Q Consensus 48 ~~~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~-~~gRt~~q~~~r~~~~~~~~~~~~ 104 (108)
.+..++++||+|||+.|+++|..||.+|..||. ++|||+.||++||.++++|.++++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~ 63 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHT 63 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccc
Confidence 456788999999999999999999999999999 899999999999999999887654
No 40
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.67 E-value=1.8e-17 Score=102.53 Aligned_cols=54 Identities=31% Similarity=0.635 Sum_probs=50.0
Q ss_pred CcccCCCHHHHHHHHHHHhhCCc-chhcccc-ccCCCHHHHHHHHHHHHhHHHhhh
Q psy15548 51 IKKTEWSREEDEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLERYEFLLYRARRKA 104 (108)
Q Consensus 51 ~~~~~Wt~eEd~~L~~~v~~~g~-~W~~Ia~-~~gRt~~q~~~r~~~~~~~~~~~~ 104 (108)
+.+++||+|||+.|+++|..||. +|..||. ++|||+.||++||.++++|.++++
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~ 57 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKT 57 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCccccc
Confidence 67899999999999999999996 7999999 899999999999999999876654
No 41
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=94.28 Aligned_cols=44 Identities=11% Similarity=0.337 Sum_probs=42.4
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhh
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEW 46 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~ 46 (108)
.+||+|||.+|+++|+.|| ++|..||.+|++||+.||+.||.++
T Consensus 19 ~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 19 REWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred CCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4899999999999999999 6999999999999999999999987
No 42
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=1.7e-16 Score=92.25 Aligned_cols=51 Identities=20% Similarity=0.511 Sum_probs=46.3
Q ss_pred CCCcccCCCHHHHHHHHHHHhhCC----cchhcccc-ccCCCHHHHHHHHHHHHhH
Q psy15548 49 PSIKKTEWSREEDEKLLHLAKLMP----TQWRTIAP-IIGRTAAQCLERYEFLLYR 99 (108)
Q Consensus 49 ~~~~~~~Wt~eEd~~L~~~v~~~g----~~W~~Ia~-~~gRt~~q~~~r~~~~~~~ 99 (108)
+...+++||++||.+|+.++..|| .+|..||. +||||+.||++||..++..
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 345678999999999999999999 68999999 9999999999999998764
No 43
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.65 E-value=5.3e-17 Score=100.83 Aligned_cols=52 Identities=33% Similarity=0.515 Sum_probs=48.3
Q ss_pred ccCCCHHHHHHHHHHHhhCCc-chhcccc-ccCCCHHHHHHHHHHHHhHHHhhh
Q psy15548 53 KTEWSREEDEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLERYEFLLYRARRKA 104 (108)
Q Consensus 53 ~~~Wt~eEd~~L~~~v~~~g~-~W~~Ia~-~~gRt~~q~~~r~~~~~~~~~~~~ 104 (108)
+++||+|||+.|+++|..||. +|..||. ++|||+.||+.||.++++|.++++
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~ 54 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTD 54 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHccccccc
Confidence 479999999999999999995 8999999 899999999999999999987654
No 44
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.64 E-value=4.9e-16 Score=90.27 Aligned_cols=48 Identities=27% Similarity=0.278 Sum_probs=42.7
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCCc
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIK 52 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~ 52 (108)
.|||+|||++|+++|.+||. .|+.||+.| |||+.||+.||.. |....+
T Consensus 24 ~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 24 GKYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp CSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred CCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence 58999999999999999997 799999999 9999999999986 444433
No 45
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.64 E-value=2.2e-16 Score=97.48 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=59.7
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHh----CCCCHHHHHHHhhhhc-----CCCCcccCCCHHHHHH-HHHHHhhC
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLL----HRKSAKQCKARWFEWL-----DPSIKKTEWSREEDEK-LLHLAKLM 71 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~----~~R~~~qc~~rw~~~l-----~~~~~~~~Wt~eEd~~-L~~~v~~~ 71 (108)
.|||+|||+.|+++|++||.++|+.|+..+ ++||+.+|++||++++ +|.+++|.=+++|-.. ++++...+
T Consensus 14 ~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~~~~~~ 93 (105)
T 2aje_A 14 RPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLNAHGYW 93 (105)
T ss_dssp CSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999865 7999999999999988 6888888777777654 56655443
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.63 E-value=2e-16 Score=93.34 Aligned_cols=47 Identities=21% Similarity=0.488 Sum_probs=43.9
Q ss_pred CCcccCCCHHHHHHHHHHHhhCCcchhcccc-ccCCCHHHHHHHHHHH
Q psy15548 50 SIKKTEWSREEDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLERYEFL 96 (108)
Q Consensus 50 ~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~-~~gRt~~q~~~r~~~~ 96 (108)
...+++||++||.+|+++|..||.+|..||+ ++|||+.||+.||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3457899999999999999999999999999 8999999999999876
No 47
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.62 E-value=2e-16 Score=101.42 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCCcccCCCHH
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSRE 59 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~~Wt~e 59 (108)
.+||+|||+.|+.+|..||. +|..||..|||||+.||+.||..++.+.+..++|+.+
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGS-KWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCS-CHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred CCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 58999999999999999996 9999999999999999999999999998888887654
No 48
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.60 E-value=4.3e-16 Score=90.53 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=43.5
Q ss_pred CCCcHHHHHHHHHHHHHhCC---CCHHHHHHHhCCCCHHHHHHHhhhhcC
Q psy15548 2 LKTMTIVDEILKAAVMKYGK---NQWSRIASLLHRKSAKQCKARWFEWLD 48 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~~~~R~~~qc~~rw~~~l~ 48 (108)
.+||++||.+|+.++..||. ++|..||.+|||||..||+.||..++.
T Consensus 19 ~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 19 EPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 48999999999999999993 489999999999999999999998765
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.58 E-value=1.3e-15 Score=90.51 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=42.5
Q ss_pred cCCCHHHHHHHHHHHhhCCc-chhcccc-----ccCCCHHHHHHHHHHHHhH
Q psy15548 54 TEWSREEDEKLLHLAKLMPT-QWRTIAP-----IIGRTAAQCLERYEFLLYR 99 (108)
Q Consensus 54 ~~Wt~eEd~~L~~~v~~~g~-~W~~Ia~-----~~gRt~~q~~~r~~~~~~~ 99 (108)
.+||+|||+.|+++|.+||. +|+.|++ |+|||+.+|++||.++++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 48999999999999999997 9999997 5799999999999999963
No 50
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.56 E-value=2.7e-15 Score=92.61 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=49.1
Q ss_pred CCCcccCCCHHHHHHHHHHHhhCCc-chhcccc-c----cCCCHHHHHHHHHHHHh-----HHHhhh
Q psy15548 49 PSIKKTEWSREEDEKLLHLAKLMPT-QWRTIAP-I----IGRTAAQCLERYEFLLY-----RARRKA 104 (108)
Q Consensus 49 ~~~~~~~Wt~eEd~~L~~~v~~~g~-~W~~Ia~-~----~gRt~~q~~~r~~~~~~-----~~~~~~ 104 (108)
+...+++||+|||+.|+++|.+||. +|+.|++ + +|||+.+|++||.++++ |.++++
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg 75 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRG 75 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccC
Confidence 4567899999999999999999996 9999998 5 79999999999999995 555544
No 51
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.55 E-value=1.9e-15 Score=95.32 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=47.6
Q ss_pred cCCCCcccCCCHHHHHHHHHHHhhCCc-chhcccc-c----cCCCHHHHHHHHHHHHh
Q psy15548 47 LDPSIKKTEWSREEDEKLLHLAKLMPT-QWRTIAP-I----IGRTAAQCLERYEFLLY 98 (108)
Q Consensus 47 l~~~~~~~~Wt~eEd~~L~~~v~~~g~-~W~~Ia~-~----~gRt~~q~~~r~~~~~~ 98 (108)
+.+...+++||+|||+.|+++|.+||. +|+.|++ + +|||+.+|++||.++++
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk 68 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 345667899999999999999999997 9999998 4 79999999999999998
No 52
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.31 E-value=4.2e-16 Score=93.93 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=44.3
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCC
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDP 49 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~ 49 (108)
.+||+|||++|+++|..||. +|..||..|||||+.||+.||.+++..
T Consensus 17 ~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 17 QGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 48999999999999999997 999999999999999999999988763
No 53
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=9.7e-15 Score=81.64 Aligned_cols=49 Identities=29% Similarity=0.502 Sum_probs=45.0
Q ss_pred CcccCCCHHHHHHHHHHHhhCCcchhccc---c-ccCCCHHHHHHHHHHHHhH
Q psy15548 51 IKKTEWSREEDEKLLHLAKLMPTQWRTIA---P-IIGRTAAQCLERYEFLLYR 99 (108)
Q Consensus 51 ~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia---~-~~gRt~~q~~~r~~~~~~~ 99 (108)
.++.+||+|||+.|+++|++||.+|..|+ . ++|||..++++||+++.+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 46789999999999999999999999999 4 5799999999999999875
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.51 E-value=2.5e-14 Score=86.62 Aligned_cols=50 Identities=22% Similarity=0.488 Sum_probs=45.1
Q ss_pred cccCCCHHHHHHHHHHHhhCC----cchhcccc-ccCCCHHHHHHHHHHHHhHHH
Q psy15548 52 KKTEWSREEDEKLLHLAKLMP----TQWRTIAP-IIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 52 ~~~~Wt~eEd~~L~~~v~~~g----~~W~~Ia~-~~gRt~~q~~~r~~~~~~~~~ 101 (108)
..++||++||.+|.+++..|| .+|..||. +||||+.+|++||..++....
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 467999999999999999996 68999999 999999999999999987753
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.50 E-value=1.3e-14 Score=91.72 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=44.7
Q ss_pred CCcccCCCHHHHHHHHHHHhhCCc-chhcccc-c----cCCCHHHHHHHHHHHHh
Q psy15548 50 SIKKTEWSREEDEKLLHLAKLMPT-QWRTIAP-I----IGRTAAQCLERYEFLLY 98 (108)
Q Consensus 50 ~~~~~~Wt~eEd~~L~~~v~~~g~-~W~~Ia~-~----~gRt~~q~~~r~~~~~~ 98 (108)
...+++||+|||+.|+++|++||. +|+.|++ + +|||+.+|++||.++++
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 346789999999999999999996 9999998 4 79999999999999994
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.50 E-value=2.8e-14 Score=86.40 Aligned_cols=46 Identities=11% Similarity=0.271 Sum_probs=42.4
Q ss_pred CCCcHHHHHHHHHHHHHhC---CCCHHHHHHHhCCCCHHHHHHHhhhhc
Q psy15548 2 LKTMTIVDEILKAAVMKYG---KNQWSRIASLLHRKSAKQCKARWFEWL 47 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g---~~~W~~Ia~~~~~R~~~qc~~rw~~~l 47 (108)
.+||+|||++|.+++..|| .+.|..||..|||||..||+.||..++
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4899999999999999997 357999999999999999999998864
No 57
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.49 E-value=1.9e-14 Score=99.54 Aligned_cols=54 Identities=26% Similarity=0.436 Sum_probs=47.3
Q ss_pred CCCcccCCCHHHHHHHHHHHhhCCcc------hhcccc-ccCCCHHHHHHHHHHHHhHHHh
Q psy15548 49 PSIKKTEWSREEDEKLLHLAKLMPTQ------WRTIAP-IIGRTAAQCLERYEFLLYRARR 102 (108)
Q Consensus 49 ~~~~~~~Wt~eEd~~L~~~v~~~g~~------W~~Ia~-~~gRt~~q~~~r~~~~~~~~~~ 102 (108)
+.+++++||+|||+.|+++|.++|+. |..||+ |+|||+.||++||..+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 34678899999999999999999875 999999 9999999999999999998764
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.7e-13 Score=75.18 Aligned_cols=46 Identities=28% Similarity=0.299 Sum_probs=42.4
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhc
Q psy15548 1 MLKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWL 47 (108)
Q Consensus 1 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l 47 (108)
+.+||+||++++.+++..||. +|..||..||+||..||..+|....
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPK-NFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 358999999999999999996 9999999999999999999997643
No 59
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.40 E-value=3e-13 Score=75.58 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=42.1
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHH---HhCCCCHHHHHHHhhhhcC
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIAS---LLHRKSAKQCKARWFEWLD 48 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~---~~~~R~~~qc~~rw~~~l~ 48 (108)
-|||+|||+.|+++|++||. +|+.|+. ++++||...++++|+++..
T Consensus 9 ~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp SSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 48999999999999999998 9999995 6679999999999998654
No 60
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.1e-12 Score=73.67 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=42.8
Q ss_pred cccCCCHHHHHHHHHHHhhCCcchhcccc-ccCCCHHHHHHHHHHHHh
Q psy15548 52 KKTEWSREEDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLERYEFLLY 98 (108)
Q Consensus 52 ~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~-~~gRt~~q~~~r~~~~~~ 98 (108)
..++||++|+.++++++..||.+|..||. ++|||..||..+|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999999999999 999999999999876543
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.25 E-value=8.3e-12 Score=72.20 Aligned_cols=50 Identities=24% Similarity=0.402 Sum_probs=44.3
Q ss_pred CCcccCCCHHHHHHHHHHHhhCC----cchhccccccCCCHHHHHHHHHHHHhH
Q psy15548 50 SIKKTEWSREEDEKLLHLAKLMP----TQWRTIAPIIGRTAAQCLERYEFLLYR 99 (108)
Q Consensus 50 ~~~~~~Wt~eEd~~L~~~v~~~g----~~W~~Ia~~~gRt~~q~~~r~~~~~~~ 99 (108)
....+.||.+||.+|..++..|+ .+|..||.++|||..+|+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 34568999999999999999997 589999995599999999999988765
No 62
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.24 E-value=2.8e-11 Score=69.91 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=42.6
Q ss_pred CCcHHHHHHHHHHHHHhCC---CCHHHHHHHhCCCCHHHHHHHhhhhcC
Q psy15548 3 KTMTIVDEILKAAVMKYGK---NQWSRIASLLHRKSAKQCKARWFEWLD 48 (108)
Q Consensus 3 ~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~~~~R~~~qc~~rw~~~l~ 48 (108)
+||.+|+.+|.+++..|+. ++|..||..||+||..+|..||...+.
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 7999999999999999986 479999999999999999999988654
No 63
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.23 E-value=1.8e-11 Score=73.79 Aligned_cols=62 Identities=16% Similarity=0.326 Sum_probs=55.1
Q ss_pred HHHHHhhhhcCCCCcccCCCHHHHHHHHHHHhhCCcchhcccc-c-----cCCCHHHHHHHHHHHHhHHHhh
Q psy15548 38 QCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAP-I-----IGRTAAQCLERYEFLLYRARRK 103 (108)
Q Consensus 38 qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~-~-----~gRt~~q~~~r~~~~~~~~~~~ 103 (108)
=+.++|..+|.+ ++||.||+..|++++++||.+|..|+. + ++||..++++||..+.+.....
T Consensus 19 yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 19 YSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp CCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 356788888875 799999999999999999999999999 7 4799999999999999887653
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.19 E-value=3.7e-11 Score=69.45 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=41.3
Q ss_pred CCCcHHHHHHHHHHHHHhCC---CCHHHHHHHhCCCCHHHHHHHhhhhcC
Q psy15548 2 LKTMTIVDEILKAAVMKYGK---NQWSRIASLLHRKSAKQCKARWFEWLD 48 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~~~~R~~~qc~~rw~~~l~ 48 (108)
.+||.|||++|.+++..|+. +.|..||..+ |||..+|+.||..+..
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 47999999999999999984 4799999998 8999999999987644
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.14 E-value=2.3e-11 Score=91.66 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=41.9
Q ss_pred cCCCHHHHHHHHHHHhhCCcchhcccc-ccCCCHHHHHHHHHHHHhH
Q psy15548 54 TEWSREEDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLERYEFLLYR 99 (108)
Q Consensus 54 ~~Wt~eEd~~L~~~v~~~g~~W~~Ia~-~~gRt~~q~~~r~~~~~~~ 99 (108)
.+||.+|..++++++.+||.+|..||+ +..||..||+++|.++.++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999999999 7789999999999876554
No 66
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.11 E-value=4.1e-11 Score=82.32 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=45.2
Q ss_pred cccCCCHHHHHHHHHHHhhCCcchhcccc-ccCCCHHHHHHHHHHHHhHH
Q psy15548 52 KKTEWSREEDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 52 ~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~-~~gRt~~q~~~r~~~~~~~~ 100 (108)
..++||++|+..+++++..||++|..||+ +++||..||+++|++..++.
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999999 89999999999999887763
No 67
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.11 E-value=1.4e-10 Score=79.68 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=43.3
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcC
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLD 48 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~ 48 (108)
.+||+||+..+++++..||. +|..||..|++||..||+.+|+++..
T Consensus 134 ~~WTeEE~~lFleAl~kYGK-DW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 134 ARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp SSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 48999999999999999996 99999999999999999999988764
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=99.10 E-value=9.8e-11 Score=65.19 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=42.9
Q ss_pred CCCcHHHHHHHHHHHHHh--------CCCCHHHHHH-HhCCCCHHHHHHHhhhhcC
Q psy15548 2 LKTMTIVDEILKAAVMKY--------GKNQWSRIAS-LLHRKSAKQCKARWFEWLD 48 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~--------g~~~W~~Ia~-~~~~R~~~qc~~rw~~~l~ 48 (108)
.|||+|||..|+..|..| |..-|.++++ .+|++|-.+|++||...|.
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 589999999999999999 4447999999 8999999999999998775
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.10 E-value=1.1e-10 Score=67.36 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=42.7
Q ss_pred cccCCCHHHHHHHHHHHhhCCc----chhcccc-ccCCCHHHHHHHHHHHHhH
Q psy15548 52 KKTEWSREEDEKLLHLAKLMPT----QWRTIAP-IIGRTAAQCLERYEFLLYR 99 (108)
Q Consensus 52 ~~~~Wt~eEd~~L~~~v~~~g~----~W~~Ia~-~~gRt~~q~~~r~~~~~~~ 99 (108)
....||.+|+.+|..++..|+. +|..||. ++|||..+|+.||..+++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999873 7999999 8999999999999988553
No 70
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=99.02 E-value=2e-09 Score=77.17 Aligned_cols=101 Identities=18% Similarity=0.152 Sum_probs=81.9
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhc---------------------------------
Q psy15548 1 MLKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWL--------------------------------- 47 (108)
Q Consensus 1 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l--------------------------------- 47 (108)
+.-||..+...++.++.+||..+|..||..|+++|...++.-+ .++
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~-~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~ 188 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN-AVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA 188 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH-HHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH-HHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999999999999999998885432 211
Q ss_pred ------------------CCCCcccCCCHHHHHHHHHHHhhCC----cchhcccc-------------ccCCCHHHHHHH
Q psy15548 48 ------------------DPSIKKTEWSREEDEKLLHLAKLMP----TQWRTIAP-------------IIGRTAAQCLER 92 (108)
Q Consensus 48 ------------------~~~~~~~~Wt~eEd~~L~~~v~~~g----~~W~~Ia~-------------~~gRt~~q~~~r 92 (108)
.+..+...||.+||..|+-++.+|| ++|..|.. +..||+.++..|
T Consensus 189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR 268 (304)
T 1ofc_X 189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR 268 (304)
T ss_dssp HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 0223446899999999999999988 58999852 236999999999
Q ss_pred HHHHHhHHHh
Q psy15548 93 YEFLLYRARR 102 (108)
Q Consensus 93 ~~~~~~~~~~ 102 (108)
...+++-..+
T Consensus 269 c~tLi~~iek 278 (304)
T 1ofc_X 269 CNTLITLIER 278 (304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999976544
No 71
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.84 E-value=3.8e-10 Score=64.78 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=39.6
Q ss_pred CCcHHHHHHHHHHHHHhCCC---CHHHHHHHhCCCCHHHHHHHhh
Q psy15548 3 KTMTIVDEILKAAVMKYGKN---QWSRIASLLHRKSAKQCKARWF 44 (108)
Q Consensus 3 ~Wt~eEd~~L~~~v~~~g~~---~W~~Ia~~~~~R~~~qc~~rw~ 44 (108)
+||.+|+++|..++..|+.+ .|.+||..|||||..+|+.+|.
T Consensus 22 ~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 79999999999999999874 7999999999999999999985
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.77 E-value=2.2e-09 Score=61.64 Aligned_cols=43 Identities=21% Similarity=0.461 Sum_probs=37.4
Q ss_pred cccCCCHHHHHHHHHHHhhCCc----chhcccc-ccCCCHHHHHHHHH
Q psy15548 52 KKTEWSREEDEKLLHLAKLMPT----QWRTIAP-IIGRTAAQCLERYE 94 (108)
Q Consensus 52 ~~~~Wt~eEd~~L~~~v~~~g~----~W~~Ia~-~~gRt~~q~~~r~~ 94 (108)
..++||.+|++.|..++..|+. +|.+||. +||||..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3568999999999999999974 7999999 99999999999885
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=3.1e-08 Score=55.62 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=40.2
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHH-HhCCCCHHHHHHHhhhh
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWFEW 46 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~-~~~~R~~~qc~~rw~~~ 46 (108)
.+||+||-++..+++..||. +|..|+. .||+|+..+|...|...
T Consensus 10 ~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 10 KCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 48999999999999999997 9999999 59999999999888653
No 74
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.70 E-value=3.7e-08 Score=59.27 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=41.9
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHh-----CCCCHHHHHHHhhhhcC
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLL-----HRKSAKQCKARWFEWLD 48 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~-----~~R~~~qc~~rw~~~l~ 48 (108)
.+||.||++.|++++++|+. .|..|+..+ ++||..+++.||..+..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 38999999999999999997 999999999 48999999999987643
No 75
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.67 E-value=2.1e-08 Score=55.65 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=40.3
Q ss_pred ccCCCHHHHHHHHHHHhhC--------Cc-chhcccc--ccCCCHHHHHHHHHHHHh
Q psy15548 53 KTEWSREEDEKLLHLAKLM--------PT-QWRTIAP--IIGRTAAQCLERYEFLLY 98 (108)
Q Consensus 53 ~~~Wt~eEd~~L~~~v~~~--------g~-~W~~Ia~--~~gRt~~q~~~r~~~~~~ 98 (108)
+.+||+|||..|++.|..+ |+ -|..+++ +|++|-.+|++||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999888 42 6999998 789999999999988764
No 76
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=5.7e-08 Score=54.56 Aligned_cols=49 Identities=10% Similarity=0.213 Sum_probs=43.2
Q ss_pred CCCcccCCCHHHHHHHHHHHhhCCcchhcccc--ccCCCHHHHHHHHHHHH
Q psy15548 49 PSIKKTEWSREEDEKLLHLAKLMPTQWRTIAP--IIGRTAAQCLERYEFLL 97 (108)
Q Consensus 49 ~~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~--~~gRt~~q~~~r~~~~~ 97 (108)
|.+...+||++|-.+..+++..||.+|..|++ +++||..+|...|....
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWK 55 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhccc
Confidence 56677899999999999999999999999997 57899999998876443
No 77
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.65 E-value=7e-08 Score=55.26 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=40.5
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHH-HhCCCCHHHHHHHhhhh
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWFEW 46 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~-~~~~R~~~qc~~rw~~~ 46 (108)
-+||+||-++..+++..||. +|..|+. .||+|+..+|...|...
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYMW 53 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 48999999999999999997 9999999 69999999999988653
No 78
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.60 E-value=1.1e-07 Score=57.46 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=40.8
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhh
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEW 46 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~ 46 (108)
-.||+||.+++.+++..||. +|..||..+|+||..+|-..|...
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPK-NFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCCCCHHHHHHHHhcc
Confidence 47999999999999999997 999999999999999999988653
No 79
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.60 E-value=7.8e-08 Score=72.61 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=42.1
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhc
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWL 47 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l 47 (108)
.+||.+|-.++++++.+||. +|..||..|++||..||+.+|.++.
T Consensus 381 ~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 48999999999999999997 9999999999999999999997653
No 80
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.97 E-value=7.9e-09 Score=58.29 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHhhCCc---chhccccccCCCHHHHHHHHHHHHhHHHh
Q psy15548 55 EWSREEDEKLLHLAKLMPT---QWRTIAPIIGRTAAQCLERYEFLLYRARR 102 (108)
Q Consensus 55 ~Wt~eEd~~L~~~v~~~g~---~W~~Ia~~~gRt~~q~~~r~~~~~~~~~~ 102 (108)
-||.|||..|+..+++-|. .|..||..+|||+.|+.+||..+++-..+
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~Lf~k 66 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMKLFEK 66 (70)
Confidence 6999999999999999886 89999993499999999999998875543
No 81
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.52 E-value=1.5e-07 Score=55.97 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHhhCCc---chhcccc-ccCCCHHHHHHHHHHHHhHHHh
Q psy15548 55 EWSREEDEKLLHLAKLMPT---QWRTIAP-IIGRTAAQCLERYEFLLYRARR 102 (108)
Q Consensus 55 ~Wt~eEd~~L~~~v~~~g~---~W~~Ia~-~~gRt~~q~~~r~~~~~~~~~~ 102 (108)
-||.+||..||...++-|. .|..||+ +-+|++.|+++||+.+++-..+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999999885 8999999 5679999999999999876544
No 82
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.48 E-value=4.7e-07 Score=54.29 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=49.7
Q ss_pred HhhhhcCCCCcccCCCHHHHHHHHHHHhhCCcchhcccc-cc-----CCCHHHHHHHHHHHHhHHHhhh
Q psy15548 42 RWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAP-II-----GRTAAQCLERYEFLLYRARRKA 104 (108)
Q Consensus 42 rw~~~l~~~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~-~~-----gRt~~q~~~r~~~~~~~~~~~~ 104 (108)
.|..+|. ...||.||...|+++++.|+-+|..|+. +. +||..++++||..+.+..+...
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3444554 3689999999999999999999999998 53 6999999999999998877643
No 83
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=98.41 E-value=3.3e-06 Score=61.94 Aligned_cols=101 Identities=21% Similarity=0.212 Sum_probs=81.1
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCHHHHHHHhC-CCCHHHHHHHhhhhc--------------------------------
Q psy15548 1 MLKTMTIVDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWFEWL-------------------------------- 47 (108)
Q Consensus 1 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~-~R~~~qc~~rw~~~l-------------------------------- 47 (108)
+.-||.-+=..++.++.+||.++-..||..|. ++|...++ +|..++
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~ 201 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQE 201 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999999998 99998887 554331
Q ss_pred --------------------CCC-CcccCCCHHHHHHHHHHHhhCC----cchhccc-----------c--ccCCCHHHH
Q psy15548 48 --------------------DPS-IKKTEWSREEDEKLLHLAKLMP----TQWRTIA-----------P--IIGRTAAQC 89 (108)
Q Consensus 48 --------------------~~~-~~~~~Wt~eEd~~L~~~v~~~g----~~W~~Ia-----------~--~~gRt~~q~ 89 (108)
.++ .+...||.+||..|+-++-+|| ++|..|- . +..||+..+
T Consensus 202 ~L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL 281 (374)
T 2y9y_A 202 ALRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVEL 281 (374)
T ss_dssp HHHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHH
T ss_pred HHHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHH
Confidence 011 1345799999999999998887 5798882 2 236999999
Q ss_pred HHHHHHHHhHHHh
Q psy15548 90 LERYEFLLYRARR 102 (108)
Q Consensus 90 ~~r~~~~~~~~~~ 102 (108)
..|...+++-..+
T Consensus 282 ~rRc~tLi~~IeK 294 (374)
T 2y9y_A 282 ARRGNTLLQCLEK 294 (374)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999976544
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.37 E-value=5e-07 Score=54.50 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=40.2
Q ss_pred ccCCCHHHHHHHHHHHhhCCcchhcccc-ccCCCHHHHHHHHHHH
Q psy15548 53 KTEWSREEDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLERYEFL 96 (108)
Q Consensus 53 ~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~-~~gRt~~q~~~r~~~~ 96 (108)
...||++|..++.+++..||.+|..|+. +++||..+|-..|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 3589999999999999999999999999 8999999999888644
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.33 E-value=1e-06 Score=50.39 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=40.2
Q ss_pred cccCCCHHHHHHHHHHHhhCCcchhcccc--ccCCCHHHHHHHHHHH
Q psy15548 52 KKTEWSREEDEKLLHLAKLMPTQWRTIAP--IIGRTAAQCLERYEFL 96 (108)
Q Consensus 52 ~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~--~~gRt~~q~~~r~~~~ 96 (108)
...+||++|-.+..+++..||.+|..|++ +++||..+|...|...
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW 53 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 34689999999999999999999999998 5789999999888743
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=98.29 E-value=9.4e-06 Score=55.01 Aligned_cols=99 Identities=19% Similarity=0.152 Sum_probs=71.8
Q ss_pred CCCcHHHHHHHHHHHHHhC--CCCHHHHHHH--hCCCCHHHHHHHhhhh-------cC----------------------
Q psy15548 2 LKTMTIVDEILKAAVMKYG--KNQWSRIASL--LHRKSAKQCKARWFEW-------LD---------------------- 48 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g--~~~W~~Ia~~--~~~R~~~qc~~rw~~~-------l~---------------------- 48 (108)
..||..|-..|++++.+|| .+.|..|+.. +.+++...+..-+..+ +.
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPTFR 87 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchhhh
Confidence 4799999999999999999 4689999975 5688876665422110 00
Q ss_pred ------------------------------------------CCCcccCCCHHHHHHHHHHHhhCC-cchhcccc--cc-
Q psy15548 49 ------------------------------------------PSIKKTEWSREEDEKLLHLAKLMP-TQWRTIAP--II- 82 (108)
Q Consensus 49 ------------------------------------------~~~~~~~Wt~eEd~~L~~~v~~~g-~~W~~Ia~--~~- 82 (108)
+......||.+||..|+-++.+|| ++|..|-. -.
T Consensus 88 ~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~ 167 (211)
T 4b4c_A 88 ISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLS 167 (211)
T ss_dssp ETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSS
T ss_pred hcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcC
Confidence 000123599999999999999999 89988754 11
Q ss_pred ----------C--CCHHHHHHHHHHHHhHH
Q psy15548 83 ----------G--RTAAQCLERYEFLLYRA 100 (108)
Q Consensus 83 ----------g--Rt~~q~~~r~~~~~~~~ 100 (108)
. +++..+..|..++++-.
T Consensus 168 ~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 168 LTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp CTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCChHHHHHHHHHHHHHH
Confidence 2 35668999988777644
No 87
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.23 E-value=4e-06 Score=49.80 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=41.7
Q ss_pred CCCcHHHHHHHHHHHHHhCC--CCHHHHHHHhCCCCHHHHHHHhhhhc
Q psy15548 2 LKTMTIVDEILKAAVMKYGK--NQWSRIASLLHRKSAKQCKARWFEWL 47 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~--~~W~~Ia~~~~~R~~~qc~~rw~~~l 47 (108)
+-||.|||..++....+-|. .-|..||..+++|++.|+.+|++..+
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 57999999999999999876 37999999999999999999998854
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=98.07 E-value=2.4e-06 Score=50.45 Aligned_cols=50 Identities=20% Similarity=0.532 Sum_probs=41.0
Q ss_pred cccCCCHHHHHHHHHHHhhCC----------cchhcccc-cc----CCCHHHHHHHHHHHHhHHH
Q psy15548 52 KKTEWSREEDEKLLHLAKLMP----------TQWRTIAP-II----GRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 52 ~~~~Wt~eEd~~L~~~v~~~g----------~~W~~Ia~-~~----gRt~~q~~~r~~~~~~~~~ 101 (108)
....||.+|...|++++.... ..|..||. |. .||+.||+.+|.++.+...
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 356899999999999986422 26999999 63 4999999999999988754
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.32 E-value=5.6e-07 Score=50.72 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=41.1
Q ss_pred CCCcHHHHHHHHHHHHHhCC--CCHHHHHHHhCCCCHHHHHHHhhhhcC
Q psy15548 2 LKTMTIVDEILKAAVMKYGK--NQWSRIASLLHRKSAKQCKARWFEWLD 48 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~--~~W~~Ia~~~~~R~~~qc~~rw~~~l~ 48 (108)
+-||.|||..|+..+.+-|. .-|..||..+ +|++.|+..||+..+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 57999999999999999886 3799999999 8999999999988654
No 90
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=98.03 E-value=4.7e-06 Score=49.17 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=38.5
Q ss_pred CCCcHHHHHHHHHHHHHhCC---------CCHHHHHHHhC----CCCHHHHHHHhhhhc
Q psy15548 2 LKTMTIVDEILKAAVMKYGK---------NQWSRIASLLH----RKSAKQCKARWFEWL 47 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~---------~~W~~Ia~~~~----~R~~~qc~~rw~~~l 47 (108)
..||.+|-..|+++...... ..|..||..|. .||+.||+.+|.++.
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 57999999999999976321 26999999876 799999999998753
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.85 E-value=4.7e-05 Score=45.55 Aligned_cols=44 Identities=11% Similarity=0.170 Sum_probs=40.4
Q ss_pred CCcHHHHHHHHHHHHHhCCCCHHHHHHHhC-----CCCHHHHHHHhhhhc
Q psy15548 3 KTMTIVDEILKAAVMKYGKNQWSRIASLLH-----RKSAKQCKARWFEWL 47 (108)
Q Consensus 3 ~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~-----~R~~~qc~~rw~~~l 47 (108)
.||.||...|.+++..|.- .|..|+.... .||..++++||..+.
T Consensus 32 ~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 32 AWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999997 9999999764 799999999998764
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=97.13 E-value=0.0024 Score=35.55 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=38.6
Q ss_pred CCCcHHHHHHHHHHHHHhCCC--CHHHHHHHhC--CCCHHHHHHHhhhh
Q psy15548 2 LKTMTIVDEILKAAVMKYGKN--QWSRIASLLH--RKSAKQCKARWFEW 46 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~--~W~~Ia~~~~--~R~~~qc~~rw~~~ 46 (108)
+.||+|..+.+.++|+..|.. -++.|.+.|+ +.|..++..|.+.|
T Consensus 8 ~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 8 VLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 579999999999999999953 3889999887 78999998887654
No 93
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.99 E-value=0.00063 Score=48.03 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=26.2
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCHHHHHH
Q psy15548 2 LKTMTIVDEILKAAVMKYGKNQWSRIAS 29 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~ 29 (108)
+.|+.+||..|+.+|.+||.|+|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999999999985
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.79 E-value=0.0012 Score=44.46 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=25.7
Q ss_pred CCcHHHHHHHHHHHHHhCCCCHHHHHH
Q psy15548 3 KTMTIVDEILKAAVMKYGKNQWSRIAS 29 (108)
Q Consensus 3 ~Wt~eEd~~L~~~v~~~g~~~W~~Ia~ 29 (108)
.||++||..|+.+|.+||.++|..|-.
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 699999999999999999999999986
No 95
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.43 E-value=0.0046 Score=44.30 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=39.6
Q ss_pred CCcHHHHHHHHHHHHHhCC---CCHHHHHH------------HhCCCCHHHHHHHhhhhcC
Q psy15548 3 KTMTIVDEILKAAVMKYGK---NQWSRIAS------------LLHRKSAKQCKARWFEWLD 48 (108)
Q Consensus 3 ~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~------------~~~~R~~~qc~~rw~~~l~ 48 (108)
.||.+||..|+-++.+||. ++|..|.. ++..||+.++..|-..++.
T Consensus 214 ~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~ 274 (304)
T 1ofc_X 214 NYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT 274 (304)
T ss_dssp SCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 6999999999999999999 99999973 3447999999999876543
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=96.31 E-value=0.014 Score=32.39 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=38.7
Q ss_pred CcccCCCHHHHHHHHHHHhhCCcc---hhcccc-c--cCCCHHHHHHHHHHHHh
Q psy15548 51 IKKTEWSREEDEKLLHLAKLMPTQ---WRTIAP-I--IGRTAAQCLERYEFLLY 98 (108)
Q Consensus 51 ~~~~~Wt~eEd~~L~~~v~~~g~~---W~~Ia~-~--~gRt~~q~~~r~~~~~~ 98 (108)
..+-.||+|....++++|...|.+ +..|.+ | +|.|..+|+++.+.+..
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999964 567777 3 57999999998776544
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=94.56 E-value=0.018 Score=40.64 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHHHHHHHhCC--CCHHHHHH--HhCCCCH
Q psy15548 2 LKTMTIVDEILKAAVMKYGK--NQWSRIAS--LLHRKSA 36 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~--~~W~~Ia~--~~~~R~~ 36 (108)
.+||.-|-..|++++.+||. ..|..|+. .|+.++.
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~ 42 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSF 42 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCH
Confidence 57999999999999999995 47888875 3445554
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.07 E-value=0.094 Score=38.53 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=37.8
Q ss_pred CCcHHHHHHHHHHHHHhCC---CCHHHHHHH------------hCCCCHHHHHHHhhhhc
Q psy15548 3 KTMTIVDEILKAAVMKYGK---NQWSRIASL------------LHRKSAKQCKARWFEWL 47 (108)
Q Consensus 3 ~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~------------~~~R~~~qc~~rw~~~l 47 (108)
-||.+||.-|+-++.+||. ++|..|-.. +..||+..+..|-..++
T Consensus 230 ~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi 289 (374)
T 2y9y_A 230 TYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLL 289 (374)
T ss_dssp CSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 4899999999999999999 899999654 33799999998876543
No 99
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=91.25 E-value=0.29 Score=30.32 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=41.3
Q ss_pred HHHHHHHHhCC-------CCHHHHHHHhCC-----CCHHHHHHHhhhhcCCCCcccCCCHHHHHHHHHHHh
Q psy15548 11 ILKAAVMKYGK-------NQWSRIASLLHR-----KSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAK 69 (108)
Q Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~-----R~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~~v~ 69 (108)
.|..+|.+.|. +.|.+||..|+- -.....+..|..+|.|- ...+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 56677777765 489999999862 12567788999888753 3488899998887664
No 100
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=90.83 E-value=0.24 Score=30.30 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=30.3
Q ss_pred HHHHHHHHhCC-------CCHHHHHHHhCCCCHHHHHHHhhhhcCC
Q psy15548 11 ILKAAVMKYGK-------NQWSRIASLLHRKSAKQCKARWFEWLDP 49 (108)
Q Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~R~~~qc~~rw~~~l~~ 49 (108)
.|..+|...|. +.|.+||..|+--.+..++..|..+|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 46677777765 3799999999855578888888888764
No 101
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=87.59 E-value=1.4 Score=26.83 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=28.9
Q ss_pred HHHHHHHHhCC-------CCHHHHHHHhCCCC----HHHHHHHhhhhcCC
Q psy15548 11 ILKAAVMKYGK-------NQWSRIASLLHRKS----AKQCKARWFEWLDP 49 (108)
Q Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~R~----~~qc~~rw~~~l~~ 49 (108)
.|..+|...|. +.|.+||..|+--. ..+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57778888775 37999999987322 56778888887754
No 102
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=86.95 E-value=0.85 Score=27.25 Aligned_cols=39 Identities=26% Similarity=0.449 Sum_probs=27.7
Q ss_pred HHHHHHHHhCC-------CCHHHHHHHhCCCC----HHHHHHHhhhhcCC
Q psy15548 11 ILKAAVMKYGK-------NQWSRIASLLHRKS----AKQCKARWFEWLDP 49 (108)
Q Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~R~----~~qc~~rw~~~l~~ 49 (108)
.|..+|.+.|. +.|.+||..|+--. ..+.+..|.++|.|
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 56777777765 37999999997322 46777778776653
No 103
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=86.80 E-value=0.69 Score=27.71 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC-------CCHHHHHHHhCCC-----CHHHHHHHhhhhcCC
Q psy15548 11 ILKAAVMKYGK-------NQWSRIASLLHRK-----SAKQCKARWFEWLDP 49 (108)
Q Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~R-----~~~qc~~rw~~~l~~ 49 (108)
.|..+|...|. +.|.+||..|+-- ...+++..|.++|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777764 3799999998721 246788888888875
No 104
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=85.80 E-value=1.4 Score=25.78 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=26.8
Q ss_pred HHHHHHHHhCC-------CCHHHHHHHhCCC----CHHHHHHHhhhhcCC
Q psy15548 11 ILKAAVMKYGK-------NQWSRIASLLHRK----SAKQCKARWFEWLDP 49 (108)
Q Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~R----~~~qc~~rw~~~l~~ 49 (108)
.|..+|.+.|. +.|.+||..|+-- ...+++..|.++|.|
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 46666776653 4799999998721 256778888777653
No 105
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=85.18 E-value=0.49 Score=29.30 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=29.1
Q ss_pred HHHHHHHHhCC-------CCHHHHHHHhCCCCHHHHHHHhhhhcCC
Q psy15548 11 ILKAAVMKYGK-------NQWSRIASLLHRKSAKQCKARWFEWLDP 49 (108)
Q Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~R~~~qc~~rw~~~l~~ 49 (108)
.|..+|.+.|. +.|.+||..|+--.+..++..|.++|.|
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 45666766654 3799999999855588888888887654
No 106
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=84.99 E-value=2.2 Score=26.27 Aligned_cols=39 Identities=23% Similarity=0.414 Sum_probs=28.1
Q ss_pred HHHHHHHHhCC-------CCHHHHHHHhCCCC----HHHHHHHhhhhcCC
Q psy15548 11 ILKAAVMKYGK-------NQWSRIASLLHRKS----AKQCKARWFEWLDP 49 (108)
Q Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~R~----~~qc~~rw~~~l~~ 49 (108)
.|..+|...|. +.|.+||..|+--+ ..+++..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777765 37999999987322 46778888877653
No 107
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=84.35 E-value=1.9 Score=27.55 Aligned_cols=36 Identities=19% Similarity=0.465 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCCHHHHHHHhhhhcCCCCcccCCCHHHHHHHHH
Q psy15548 24 WSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLH 66 (108)
Q Consensus 24 W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~ 66 (108)
-..||..+.|+|+.+||..+. + ...+|+||++.+.+
T Consensus 118 c~~vA~~ikgkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 118 CQTVADMIKGKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHHTTTTCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 467888999999999998652 1 22599999987654
No 108
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=83.89 E-value=1.6 Score=25.38 Aligned_cols=48 Identities=27% Similarity=0.574 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCC------CHHHHHHHhhhhcCCCCcccCCCHHHHHHHHHH
Q psy15548 9 DEILKAAVMKYGKNQWSRIASLLHRK------SAKQCKARWFEWLDPSIKKTEWSREEDEKLLHL 67 (108)
Q Consensus 9 d~~L~~~v~~~g~~~W~~Ia~~~~~R------~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~~ 67 (108)
+..|.++|+.|| |...+..++-+ +..+|-.- +++.+|-.+..+.|.-.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I~CF~~~PSikSSLKF--------LRKTpWAR~KVE~lYL~ 71 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNINCFKKDPSIKSSLKF--------LRKTDWARERVENIYLK 71 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTSSSTTSSCCHHHHHHH--------HHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcccccCCCCCchHHHHHH--------HhcCHhHHHHHHHHHHH
Confidence 567889999998 99999988732 23332221 35679999888876543
No 109
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=83.37 E-value=2.5 Score=25.88 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=27.7
Q ss_pred HHHHHHHHhCC-------CCHHHHHHHhCCCC----HHHHHHHhhhhcCC
Q psy15548 11 ILKAAVMKYGK-------NQWSRIASLLHRKS----AKQCKARWFEWLDP 49 (108)
Q Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~R~----~~qc~~rw~~~l~~ 49 (108)
.|..+|.+.|. +.|.+|+..|+-.+ ..+.+..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 56777887775 37999999987322 35777788777653
No 110
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=83.19 E-value=1.7 Score=23.06 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHH
Q psy15548 55 EWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 55 ~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~ 100 (108)
..++.+-. ++.+.-..|.+..+||...|-|...++.+....++..
T Consensus 15 ~L~~~~r~-il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 15 DLTTDQRE-ALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SSCHHHHH-HHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 35555544 4445446788999999988999999988877666554
No 111
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=82.19 E-value=3.2 Score=25.55 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC-------CCHHHHHHHhCCC-----CHHHHHHHhhhhcCC
Q psy15548 11 ILKAAVMKYGK-------NQWSRIASLLHRK-----SAKQCKARWFEWLDP 49 (108)
Q Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~R-----~~~qc~~rw~~~l~~ 49 (108)
.|..+|...|. +.|.+||..|+-- ...+++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777775 4799999998721 256778888888765
No 112
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=81.24 E-value=2.3 Score=23.07 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHhh---CCcchhccccccCCCHHHHHHHHHHHHhHHH
Q psy15548 55 EWSREEDEKLLHLAKL---MPTQWRTIAPIIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 55 ~Wt~eEd~~L~~~v~~---~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~ 101 (108)
.-++.|-+.|.-.+-. .|.++.+||..+|-|...|+.+....++...
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3455555554443321 5789999999999999999988877776654
No 113
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=80.38 E-value=8.2 Score=24.29 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=34.4
Q ss_pred HHHHHHHHhCC-------CCHHHHHHHhCCC-----CHHHHHHHhhhhcCCC--CcccCCCHHHHH
Q psy15548 11 ILKAAVMKYGK-------NQWSRIASLLHRK-----SAKQCKARWFEWLDPS--IKKTEWSREEDE 62 (108)
Q Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~R-----~~~qc~~rw~~~l~~~--~~~~~Wt~eEd~ 62 (108)
.|..+|...|. +.|.+||..|+-- ...+++..|.++|.|- ..+|.=+++|-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~ 133 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQ 133 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 56777777765 4799999998721 2567888898888762 223444444443
No 114
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=80.33 E-value=3.1 Score=26.87 Aligned_cols=35 Identities=11% Similarity=0.301 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCCHHHHHHHhhhhcCCCCcccCCCHHHHHHHH
Q psy15548 24 WSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLL 65 (108)
Q Consensus 24 W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~ 65 (108)
-..||..+.|+|+.++|..+. + ...+|+||++.+.
T Consensus 126 c~~vA~~ikgktpeeiR~~f~-I------~nd~t~eEe~~ir 160 (169)
T 3v7d_A 126 CKVVAEMIRGRSPEEIRRTFN-I------VNDFTPEEEAAIR 160 (169)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT-C------CCCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHcC-C------CCCCCHHHHHHHH
Confidence 577899999999999998662 1 2259999998764
No 115
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=78.54 E-value=2.4 Score=22.62 Aligned_cols=31 Identities=10% Similarity=-0.027 Sum_probs=26.1
Q ss_pred CCcchhccccccCCCHHHHHHHHHHHHhHHH
Q psy15548 71 MPTQWRTIAPIIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 71 ~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~ 101 (108)
.|.+..+||..+|-|...++.+....+++..
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998887776553
No 116
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=76.92 E-value=3.4 Score=26.18 Aligned_cols=36 Identities=14% Similarity=0.386 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCCHHHHHHHhhhhcCCCCcccCCCHHHHHHHHH
Q psy15548 24 WSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLH 66 (108)
Q Consensus 24 W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~ 66 (108)
-..||..+.|+|+.+||..+. + ...+|+||++.+.+
T Consensus 119 c~~va~~i~gkt~eeir~~f~-I------~~d~t~eEe~~ir~ 154 (159)
T 2ast_A 119 CKTVANMIKGKTPEEIRKTFN-I------KNDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHHHSSCCHHHHHHHTT-C------CCCSCTTHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHcC-C------CCCCCHHHHHHHHH
Confidence 456888999999999999762 1 22589999887653
No 117
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=74.87 E-value=4.7 Score=22.80 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=28.6
Q ss_pred HHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHHH
Q psy15548 64 LLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 64 L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~ 101 (108)
++.+.-..|.+-.+||..+|-|...|+.+....++...
T Consensus 45 vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 45 VIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp HHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 44444456778899999999999999988877666543
No 118
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=74.62 E-value=12 Score=26.58 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=60.1
Q ss_pred CCcHHHHHH-HHHHHHHhCCCCHHHHHHHhCCCCHHHH---HHHhhhhcCCCCcc-------------------cCCCHH
Q psy15548 3 KTMTIVDEI-LKAAVMKYGKNQWSRIASLLHRKSAKQC---KARWFEWLDPSIKK-------------------TEWSRE 59 (108)
Q Consensus 3 ~Wt~eEd~~-L~~~v~~~g~~~W~~Ia~~~~~R~~~qc---~~rw~~~l~~~~~~-------------------~~Wt~e 59 (108)
.+.++.|.. |.++++-+|. +=..|-+.+.+||+.|. +..|......++-. +++ ..
T Consensus 15 ~~~~~~DA~~L~~A~kG~Gt-de~~lieIL~~rs~~q~~~I~~aY~~~y~~~L~~dl~se~sG~f~~ll~~l~~~~~-~~ 92 (321)
T 1n00_A 15 VPSVSEDCEQLRKAFSGWGT-NEGLIIDILGHRNAEQRNLIRKTYAETYGEDLLKALDKELSNDFERLVLLWALDPA-ER 92 (321)
T ss_dssp CCCHHHHHHHHHHHTSSSSC-CHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCHHHHHHHHSCHHHHHHHHHHHSCHH-HH
T ss_pred CCCHHHHHHHHHHHhCCCCC-CHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCchHHHHHHHHcCChh-HH
Confidence 456666654 5577777776 77888889999998665 55666554432211 122 22
Q ss_pred HHHHHHHHHhhCCcchhcccc-ccCCCHHHHH---HHHHHHHhHHHhhh
Q psy15548 60 EDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCL---ERYEFLLYRARRKA 104 (108)
Q Consensus 60 Ed~~L~~~v~~~g~~W~~Ia~-~~gRt~~q~~---~r~~~~~~~~~~~~ 104 (108)
+-..|.++++..|.+=..+-. +.+||+.|++ ..|.......+.++
T Consensus 93 dA~~l~~A~kg~Gtde~~lieIL~tRs~~ql~~i~~~Y~~~~g~~Le~d 141 (321)
T 1n00_A 93 DALLANEATKRWTSSNQVLMEIACTRSANQLLHARQAYHARYKKSLEED 141 (321)
T ss_dssp HHHHHHHHHSSSCSSCHHHHHHHHSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHhhccCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCccHHHH
Confidence 333455666666666455566 7799999875 55665555444443
No 119
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=74.50 E-value=3.4 Score=25.43 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=28.9
Q ss_pred HHHHHHhhCCc--------chhcccc-ccCCCHHHHHHHHHHHHhHHH
Q psy15548 63 KLLHLAKLMPT--------QWRTIAP-IIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 63 ~L~~~v~~~g~--------~W~~Ia~-~~gRt~~q~~~r~~~~~~~~~ 101 (108)
.|..+|...|+ .|..|+. +---++..++..|..+|-+.-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 46677777764 7999999 422228899999999988764
No 120
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=74.20 E-value=1.9 Score=26.22 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=28.1
Q ss_pred HHHHHHhhCCc--------chhcccc-ccCCCHHHHHHHHHHHHhHHH
Q psy15548 63 KLLHLAKLMPT--------QWRTIAP-IIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 63 ~L~~~v~~~g~--------~W~~Ia~-~~gRt~~q~~~r~~~~~~~~~ 101 (108)
.|..+|...|+ .|..|+. +---.+..++..|..+|-+.-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 100 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 100 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 36667766663 8999999 422227889999999887753
No 121
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=73.92 E-value=3.3 Score=26.17 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhCC-cchhccccccCCCHHHHHHHHHHHHhHHH
Q psy15548 59 EEDEKLLHLAKLMP-TQWRTIAPIIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 59 eEd~~L~~~v~~~g-~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~ 101 (108)
+-|..|+.+++..| -.+.+||+..|=|+..|+.|...+....+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 45778888888776 58999999889999999999998876553
No 122
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=72.93 E-value=5.7 Score=24.85 Aligned_cols=31 Identities=23% Similarity=0.173 Sum_probs=25.7
Q ss_pred CCcchhccccccCCCHHHHHHHHHHHHhHHH
Q psy15548 71 MPTQWRTIAPIIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 71 ~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~ 101 (108)
.|-+..+||..+|-|...++.+....++...
T Consensus 150 ~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 150 GDLTHRELAAETGLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4568899999999999999998887776654
No 123
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=70.33 E-value=8.8 Score=24.09 Aligned_cols=89 Identities=11% Similarity=0.075 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCCcc-----------------------cCCCHHHHHH
Q psy15548 7 IVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKK-----------------------TEWSREEDEK 63 (108)
Q Consensus 7 eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~-----------------------~~Wt~eEd~~ 63 (108)
+-|..|+.++...|.-.+.+||+.++ -++..|+.|.......++-+ .+=+++.-..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg-~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~~~~~~~~~~ 81 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG-LSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASHSIEWLKR 81 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT-CCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCSCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEcCCChHHHHH
Confidence 45788888888888779999999995 79999999998754322111 0112233445
Q ss_pred HHHHHhhCC---------cchhccccccCCCHHHHHHHHHHH
Q psy15548 64 LLHLAKLMP---------TQWRTIAPIIGRTAAQCLERYEFL 96 (108)
Q Consensus 64 L~~~v~~~g---------~~W~~Ia~~~gRt~~q~~~r~~~~ 96 (108)
+.+.+..++ +.|.-+..+..++...+..-...+
T Consensus 82 ~~~~l~~~peV~~~~~vtG~~D~~l~v~~~d~~~l~~~l~~~ 123 (162)
T 3i4p_A 82 FSEVVSEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFYKRM 123 (162)
T ss_dssp HHHHHHHCTTEEEEEECCSSCSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEeeecCCCCCEEEEEEECCHHHHHHHHHHH
Confidence 566665554 367777775567777766544443
No 124
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=66.71 E-value=8.7 Score=24.14 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=25.6
Q ss_pred CCcchhccccccCCCHHHHHHHHHHHHhHHHh
Q psy15548 71 MPTQWRTIAPIIGRTAAQCLERYEFLLYRARR 102 (108)
Q Consensus 71 ~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~~ 102 (108)
.|-+..+||..+|-|...++.+....++...+
T Consensus 155 ~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999888877665543
No 125
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=66.65 E-value=8.2 Score=20.35 Aligned_cols=35 Identities=11% Similarity=-0.003 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhCCcchhccccccCCCHHHHHHHH
Q psy15548 59 EEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERY 93 (108)
Q Consensus 59 eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~ 93 (108)
-|...|..++..++++....|+.+|=+...+..+-
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rkl 53 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHH
Confidence 46677888899999999999997776666555543
No 126
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=66.53 E-value=8.5 Score=21.53 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=25.6
Q ss_pred CCcchhccccccCCCHHHHHHHHHHHHhHHH
Q psy15548 71 MPTQWRTIAPIIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 71 ~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~ 101 (108)
.|.+..+||..+|-|...|+.+....++...
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5679999999999999999988777766543
No 127
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=65.35 E-value=9 Score=20.58 Aligned_cols=44 Identities=11% Similarity=0.035 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHHH
Q psy15548 56 WSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 56 Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~ 101 (108)
.|+.|-+.|. ++ ..|.+-.+||..+|-|...++.+...++++..
T Consensus 17 L~~~e~~vl~-l~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLS-AV-VAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHH-HH-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHH-HH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 5566655544 44 56788899999889999999988887776653
No 128
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=65.31 E-value=34 Score=24.30 Aligned_cols=100 Identities=19% Similarity=0.092 Sum_probs=60.5
Q ss_pred CCcHHHHHH-HHHHHHHhCCCCHHHHHHHhCCCCHHHH---HHHhhhhcCCCCcc-------c-----------CCCHHH
Q psy15548 3 KTMTIVDEI-LKAAVMKYGKNQWSRIASLLHRKSAKQC---KARWFEWLDPSIKK-------T-----------EWSREE 60 (108)
Q Consensus 3 ~Wt~eEd~~-L~~~v~~~g~~~W~~Ia~~~~~R~~~qc---~~rw~~~l~~~~~~-------~-----------~Wt~eE 60 (108)
+|+++.|.. |.++++-+|. +=..|-+.+.+||+.|. +..|......++-. | +.-..+
T Consensus 20 ~f~~~~DA~~L~kA~kG~Gt-dE~~lieIL~~Rs~~q~~~I~~aY~~~yg~~L~~dlkse~sG~f~~ll~~l~~~~~~~D 98 (327)
T 1w3w_A 20 HFNPDPDAETLYKAMKGIGT-NEQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALMYPPYRYE 98 (327)
T ss_dssp SCCCHHHHHHHHHHHSSSSC-CHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCTTHHH
T ss_pred CCCHHHHHHHHHHHhcCCCC-CHHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHHHHcCCcHHHHHHHhcCCHHHHH
Confidence 356666654 5577777776 77777888889998654 55666554432211 1 222334
Q ss_pred HHHHHHHHhhCCcchhcccc-ccCCCHHHHH---HHHHHHHhHHHhh
Q psy15548 61 DEKLLHLAKLMPTQWRTIAP-IIGRTAAQCL---ERYEFLLYRARRK 103 (108)
Q Consensus 61 d~~L~~~v~~~g~~W~~Ia~-~~gRt~~q~~---~r~~~~~~~~~~~ 103 (108)
-..|.++++..|.+=..+-+ +.+||+.|++ ..|.......+.+
T Consensus 99 A~~L~~A~~g~Gtde~~lieIL~tRs~~ql~~i~~~Y~~~yg~sLe~ 145 (327)
T 1w3w_A 99 AKELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEEDYGSSLEE 145 (327)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHhhccCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCccHHH
Confidence 44555666656665445566 6789999875 4565555544443
No 129
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=65.08 E-value=26 Score=24.58 Aligned_cols=100 Identities=16% Similarity=0.083 Sum_probs=62.8
Q ss_pred CcHHHH-HHHHHHHHHhCCCCHHHHHHHhCCCCHHHH---HHHhhhhcCCCCcc-------cC----------CCHHHHH
Q psy15548 4 TMTIVD-EILKAAVMKYGKNQWSRIASLLHRKSAKQC---KARWFEWLDPSIKK-------TE----------WSREEDE 62 (108)
Q Consensus 4 Wt~eEd-~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc---~~rw~~~l~~~~~~-------~~----------Wt~eEd~ 62 (108)
|++++| +.|.++++-+|. +=..|-..+.+|++.|- +..|......++.. |. -.++.|.
T Consensus 2 f~~~~Da~~L~kA~kg~Gt-de~~ii~IL~~rs~~qr~~I~~~Y~~~~g~dL~~~lk~elsG~fe~~l~~l~~~~~~~DA 80 (308)
T 2hyv_A 2 FDAERDALNIETAIKTKGV-DEVTIVNILTNRSNAQRQDIAFAYQRRTKKELASALKSALSGHLETVILGLLKTPAQYDA 80 (308)
T ss_dssp CCHHHHHHHHHHHHHSTTC-CHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCC-CHHHHHHHHhcCCHHHHHHHHHHHHHHhCccHHHHHHHHcCCCHHHHHHHHcCCcHHHHH
Confidence 566555 566788887886 77889999999998654 55666554432211 11 1223343
Q ss_pred -HHHHHHhhCCcchhcccc-ccCCCHHHH---HHHHHHHHhHHHhhh
Q psy15548 63 -KLLHLAKLMPTQWRTIAP-IIGRTAAQC---LERYEFLLYRARRKA 104 (108)
Q Consensus 63 -~L~~~v~~~g~~W~~Ia~-~~gRt~~q~---~~r~~~~~~~~~~~~ 104 (108)
.|..+++-.|.+=..|-. +.+||+.|. +.-|.....+.+.++
T Consensus 81 ~~L~~AmkG~Gtde~~LieIL~~Rs~~q~~~Ik~aY~~~y~~~L~~d 127 (308)
T 2hyv_A 81 SELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKD 127 (308)
T ss_dssp HHHHHHTSTTCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhCCCHHHH
Confidence 344556666766666777 778999875 566776665554443
No 130
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=62.43 E-value=17 Score=20.57 Aligned_cols=46 Identities=9% Similarity=-0.051 Sum_probs=35.9
Q ss_pred ccCCCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHH
Q psy15548 53 KTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 53 ~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~ 100 (108)
....|+.|-+.|.-+. .|..-.+||..+|-|...++.+...++++.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4568888887665554 788889999999999999999888877664
No 131
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=62.20 E-value=15 Score=20.92 Aligned_cols=46 Identities=13% Similarity=-0.090 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHHHh
Q psy15548 55 EWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRARR 102 (108)
Q Consensus 55 ~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~~ 102 (108)
..|+.|-+.|.- + ..|.+-.+||..+|-|...++.+...++++...
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 577777766554 4 678888999999999999999988887776543
No 132
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=61.79 E-value=14 Score=21.93 Aligned_cols=44 Identities=11% Similarity=0.011 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHH
Q psy15548 56 WSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 56 Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~ 100 (108)
.++.+-. ++.++-..|.+-.+||..+|-|...++.+....++..
T Consensus 26 L~~~~r~-vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 26 LTNKQRN-YLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp SCHHHHH-HHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4444443 4444446678899999988999999988877666554
No 133
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=61.79 E-value=10 Score=22.84 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=25.1
Q ss_pred hCCcchhccccccCCCHHHHHHHHHHHHhHHH
Q psy15548 70 LMPTQWRTIAPIIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 70 ~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~ 101 (108)
..|-+..+||..+|-|...|+.+....++...
T Consensus 122 ~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 122 IRGYSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34668899999999999999988877665543
No 134
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=61.47 E-value=24 Score=24.91 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=61.8
Q ss_pred CCcHHHHH-HHHHHHHHhCCCCHHHHHHHhCCCCHHHH---HHHhhhhcCCCCcc-------cC----------CCHHHH
Q psy15548 3 KTMTIVDE-ILKAAVMKYGKNQWSRIASLLHRKSAKQC---KARWFEWLDPSIKK-------TE----------WSREED 61 (108)
Q Consensus 3 ~Wt~eEd~-~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc---~~rw~~~l~~~~~~-------~~----------Wt~eEd 61 (108)
.+.+++|. .|.++++-+|. +=..|-..+.+|++.|. +..|......++.. |. -.++.|
T Consensus 16 ~~~~~~Da~~L~kA~kG~Gt-dE~~li~IL~~rs~~qr~~I~~~Y~~~~g~~L~~~lkselsG~fe~~l~~l~~~~~~~D 94 (322)
T 2zhj_A 16 GFNATEDAQVLRKAMKGLGT-DEDAIIGVLACRNTAQRQEIRTAYKSTIGRDLLEDLKSELSSNFEQVILGMMTPTVLYD 94 (322)
T ss_dssp TCCHHHHHHHHHHHHSSSSC-CHHHHHHHHTTSCHHHHHHHHHHHHHHHCSCHHHHHHHHCCHHHHHHHHHHHSCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCC-CHHHHHHHHhcCCHHHHHHHHHHHHHHhCchHHHHHHhhcCccHHHHHHHHcCCcHHHH
Confidence 46666665 55678877786 77888889999998664 55666544432211 11 123445
Q ss_pred H-HHHHHHhhCCcchhcccc-ccCCCHHHHH---HHHHHHHhHHHhh
Q psy15548 62 E-KLLHLAKLMPTQWRTIAP-IIGRTAAQCL---ERYEFLLYRARRK 103 (108)
Q Consensus 62 ~-~L~~~v~~~g~~W~~Ia~-~~gRt~~q~~---~r~~~~~~~~~~~ 103 (108)
. .|..+++-.|.+=..+-. +.+||+.|++ .-|.......+.+
T Consensus 95 A~~L~~A~kg~Gtde~~lieIL~~Rs~~ql~~I~~aY~~~y~~~Le~ 141 (322)
T 2zhj_A 95 VQELRRAMKGAGTDEGCLIEILASRNPEEIRRINQTYQQQYGRSLEE 141 (322)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHhhhccCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCccHHH
Confidence 4 444566666766666667 7789998864 4566555544433
No 135
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=59.86 E-value=6.1 Score=25.69 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=19.5
Q ss_pred HHHHHhhhhcC-CCCcccCCCHHHHHHHH
Q psy15548 38 QCKARWFEWLD-PSIKKTEWSREEDEKLL 65 (108)
Q Consensus 38 qc~~rw~~~l~-~~~~~~~Wt~eEd~~L~ 65 (108)
.+-+.+..-.. |....|-||+++|+.|.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 45555544333 45678999999999887
No 136
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=58.81 E-value=17 Score=20.05 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=35.3
Q ss_pred cCCCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHH
Q psy15548 54 TEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 54 ~~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~ 100 (108)
...|+.|-+.|.- + ..|.+-.+||..+|-|...++.+...++++.
T Consensus 20 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 20 NQLTPRERDILKL-I-AQGLPNKMIARRLDITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GGSCHHHHHHHHH-H-TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3578877766555 4 5778889999989999999998888777664
No 137
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=58.60 E-value=17 Score=20.65 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHH
Q psy15548 58 REEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERY 93 (108)
Q Consensus 58 ~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~ 93 (108)
.-|...|..++..++++-...|+.+|=+...+..+-
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LGIsr~tL~rkl 85 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLGWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHH
Confidence 346677888899999999999998786666665443
No 138
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=58.57 E-value=25 Score=24.80 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=59.4
Q ss_pred CcHHHHHH-HHHHHHHhCCCCHHHHHHHhCCCCHHHH---HHHhhhhcCCCCcc-------cCC----------CHHHHH
Q psy15548 4 TMTIVDEI-LKAAVMKYGKNQWSRIASLLHRKSAKQC---KARWFEWLDPSIKK-------TEW----------SREEDE 62 (108)
Q Consensus 4 Wt~eEd~~-L~~~v~~~g~~~W~~Ia~~~~~R~~~qc---~~rw~~~l~~~~~~-------~~W----------t~eEd~ 62 (108)
+.++.|.. |.++++-+|. +=..|-..+.+||+.|. +..|......++-. |.| ..+.|.
T Consensus 14 ~~~~~Da~~L~~A~kG~Gt-de~~lieIL~~rs~~q~~~I~~~Y~~~~g~~L~~dl~~e~sG~f~~ll~~l~~~~~~~DA 92 (320)
T 1yii_A 14 FDARADAEALRKAMKGMGT-DEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDA 92 (320)
T ss_dssp CCHHHHHHHHHHHHSSSSC-CHHHHHHHHHHSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCC-CHHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCchHHHHHHHHccChHHHHH
Confidence 46766654 5577777776 66777778888998654 55666554432211 110 124444
Q ss_pred -HHHHHHhhCCcchhcccc-ccCCCHHHHH---HHHHHHHhHHHhhh
Q psy15548 63 -KLLHLAKLMPTQWRTIAP-IIGRTAAQCL---ERYEFLLYRARRKA 104 (108)
Q Consensus 63 -~L~~~v~~~g~~W~~Ia~-~~gRt~~q~~---~r~~~~~~~~~~~~ 104 (108)
.|.++++..|.+=..+-. +.+||+.|++ .-|.......+.++
T Consensus 93 ~~L~~A~kg~Gtde~~lieIL~~Rs~~ql~~I~~aY~~~y~~~Le~d 139 (320)
T 1yii_A 93 HALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDK 139 (320)
T ss_dssp HHHHHHHSSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHhccCCCchHHHhHHHhcCCHHHHHHHHHHHHHhhCcCHHHH
Confidence 444566666666555667 6789998864 55665555444433
No 139
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Probab=57.23 E-value=36 Score=24.04 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=62.1
Q ss_pred CCcHHHHH-HHHHHHHHhCCCCHHHHHHHhCCCCHHHH---HHHhhhhcCCCCcc---cCC--------------CHHHH
Q psy15548 3 KTMTIVDE-ILKAAVMKYGKNQWSRIASLLHRKSAKQC---KARWFEWLDPSIKK---TEW--------------SREED 61 (108)
Q Consensus 3 ~Wt~eEd~-~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc---~~rw~~~l~~~~~~---~~W--------------t~eEd 61 (108)
.|++++|. .|.++++-+|. +=..|-..+.+|+..|. +..|......++.. +.. .++-|
T Consensus 17 ~f~~~~Da~~L~kA~kG~Gt-de~~li~IL~~rs~~qr~~I~~~Y~~~~g~dL~~~lk~elsG~fe~~l~~l~~~p~~~D 95 (323)
T 1axn_A 17 DFSPSVDAEAIQKAIRGIGT-DEKMLISILTERSNAQRQLIVKEYQAAYGKELKDDLKGDLSGHFEHLMVALVTPPAVFD 95 (323)
T ss_dssp TCCHHHHHHHHHHHHSSSSC-CHHHHHHHHTTSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCC-CHHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCccHHHHHHHHhcCchHHH
Confidence 46776665 56678877776 77888889999998554 55666554433211 011 12223
Q ss_pred H-HHHHHHhhCCcchhcccc-ccCCCHHHH---HHHHHHHHhHHHhhh
Q psy15548 62 E-KLLHLAKLMPTQWRTIAP-IIGRTAAQC---LERYEFLLYRARRKA 104 (108)
Q Consensus 62 ~-~L~~~v~~~g~~W~~Ia~-~~gRt~~q~---~~r~~~~~~~~~~~~ 104 (108)
. .|..+++-.|.+=..|-. +.+||+.|. +.-|.......+.++
T Consensus 96 A~~L~~A~kG~Gtde~~lieIL~~Rs~~q~~~I~~aY~~~y~~~Le~d 143 (323)
T 1axn_A 96 AKQLKKSMKGAGTNEDALIEILTTRTSRQMKDISQAYYTVYKKSLGDD 143 (323)
T ss_dssp HHHHHHHHCSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhccCCCCHHHHhHHhcCCCHHHHHHHHHHHHHhhCcCHHHH
Confidence 3 445566666777666777 778999876 455766665544433
No 140
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=56.67 E-value=16 Score=23.61 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=24.7
Q ss_pred CCcchhccccccCCCHHHHHHHHHHHHhHHH
Q psy15548 71 MPTQWRTIAPIIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 71 ~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~ 101 (108)
.|.+..+||..+|-|...|+.+....++...
T Consensus 202 ~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 202 EELPAKEVAKILETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4568899999999999999888776665543
No 141
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=56.13 E-value=20 Score=18.71 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=34.8
Q ss_pred cCCCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHH
Q psy15548 54 TEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 54 ~~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~ 100 (108)
...|+.|-+.|.- + ..|.+-.+||...|-|...++.+...+.++.
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4577777776655 4 5677889999988999999998888776654
No 142
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=55.25 E-value=29 Score=21.97 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcC
Q psy15548 7 IVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLD 48 (108)
Q Consensus 7 eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~ 48 (108)
+-|..|+.++...+.-.+.+||+.++ -+...|+.|......
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lg-lS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITG-LAESTIHERIRKLRE 67 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 45677888888888779999999995 799999999877543
No 143
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=54.91 E-value=18 Score=22.13 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhCC-cchhccccccCCCHHHHHHHHHHHHhHH
Q psy15548 59 EEDEKLLHLAKLMP-TQWRTIAPIIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 59 eEd~~L~~~v~~~g-~~W~~Ia~~~gRt~~q~~~r~~~~~~~~ 100 (108)
+-|..|+.++...| ..+.+||+..|=|...|..+...+....
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 51 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLG 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34556777777665 5899999988999999999988876654
No 144
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=53.65 E-value=14 Score=23.49 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhCC-cchhccccccCCCHHHHHHHHHHHHhHH
Q psy15548 59 EEDEKLLHLAKLMP-TQWRTIAPIIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 59 eEd~~L~~~v~~~g-~~W~~Ia~~~gRt~~q~~~r~~~~~~~~ 100 (108)
+-|..|+.++...| ..+.+||+..|-|+..|..|...+....
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESG 69 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45667777777766 5899999988999999999998876654
No 145
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=53.47 E-value=30 Score=19.96 Aligned_cols=46 Identities=17% Similarity=0.092 Sum_probs=36.3
Q ss_pred ccCCCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHH
Q psy15548 53 KTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 53 ~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~ 100 (108)
....|+.|-+.|.-++ .|..-.+||..+|-|...++.+...++++.
T Consensus 32 ~~~Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4678888888765543 577889999988999999999888777664
No 146
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=52.78 E-value=18 Score=20.21 Aligned_cols=45 Identities=18% Similarity=0.016 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHHH
Q psy15548 55 EWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 55 ~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~ 101 (108)
..|+.|-+.|.- + ..|.+-.+||..+|-|...++.+...++++..
T Consensus 29 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLL-I-AKGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHH-H-HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 567777666554 4 56888899999899999999998887776653
No 147
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=52.59 E-value=21 Score=17.95 Aligned_cols=38 Identities=8% Similarity=-0.025 Sum_probs=28.9
Q ss_pred HHHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHHH
Q psy15548 63 KLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 63 ~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~ 101 (108)
.++.++ ..|.+-.+||..+|-|...++.+...+.++..
T Consensus 5 ~vl~l~-~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 5 QVLKLI-DEGYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHHHHH-HTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 344443 55778889999899999999998887776653
No 148
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=52.41 E-value=23 Score=21.04 Aligned_cols=45 Identities=9% Similarity=-0.065 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHH
Q psy15548 55 EWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 55 ~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~ 100 (108)
..|+.+-.. +.++-..|.+-.+||...|-|...++.+.....+..
T Consensus 22 ~L~~~~r~v-l~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kL 66 (113)
T 1s7o_A 22 LLTDKQMNY-IELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp GSCHHHHHH-HHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHH-HHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 355555544 444445678889999999999999988877666544
No 149
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=52.19 E-value=45 Score=23.39 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=59.7
Q ss_pred CCcHHHHHHH-HHHHHHhCCCCHHHHHHHhCCCCHHHH---HHHhhhhcCCCCcc-------cCC----------CHHHH
Q psy15548 3 KTMTIVDEIL-KAAVMKYGKNQWSRIASLLHRKSAKQC---KARWFEWLDPSIKK-------TEW----------SREED 61 (108)
Q Consensus 3 ~Wt~eEd~~L-~~~v~~~g~~~W~~Ia~~~~~R~~~qc---~~rw~~~l~~~~~~-------~~W----------t~eEd 61 (108)
.+.++.|... .++++-+|. +=..|-+.+.+||+.|. +..|......++-. |.| ..+.|
T Consensus 11 ~~~~~~DA~~L~~A~kG~Gt-de~~lieIL~~rs~~q~~~I~~~Y~~~yg~~L~~dl~se~sG~f~~ll~~l~~~~~~~d 89 (315)
T 1dm5_A 11 SFNSREDAETLRKAMKGIGT-DEKSITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSGNYEAAALALLRKPDEFL 89 (315)
T ss_dssp TCCHHHHHHHHHHHHSSSSC-CHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCC-CHHHHHHHHhcCCHHHHHHHHHHHHHHHCCCHHHHHHhhcCccHHHHHHHHccChhHHH
Confidence 3567666554 467766676 66777788888998655 55666554432211 111 12333
Q ss_pred H-HHHHHHhhCCcchhcccc-ccCCCHHHHH---HHHHHHHhHHHhhh
Q psy15548 62 E-KLLHLAKLMPTQWRTIAP-IIGRTAAQCL---ERYEFLLYRARRKA 104 (108)
Q Consensus 62 ~-~L~~~v~~~g~~W~~Ia~-~~gRt~~q~~---~r~~~~~~~~~~~~ 104 (108)
. .|.++++..|.+=..+-. +.+||+.|++ ..|.......+.++
T Consensus 90 A~~L~~A~kg~Gtde~~lieIL~tRs~~ql~~i~~~Y~~~yg~~Le~d 137 (315)
T 1dm5_A 90 AEQLHAAMKGLGTDKNALIDILCTQSNAQIHAIKAAFKLLYKEDLEKE 137 (315)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHSSCCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhhcCCCchhhhhhhHhcCCHHHHHHHHHHHHHHhCccHHHH
Confidence 3 455666666766555666 7889999875 55665555444433
No 150
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=50.67 E-value=15 Score=21.89 Aligned_cols=40 Identities=15% Similarity=-0.042 Sum_probs=32.0
Q ss_pred CCHHHHHHHhhhhcCCCCcccCCCHHHHHHHHHHHhhCCc
Q psy15548 34 KSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPT 73 (108)
Q Consensus 34 R~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~~v~~~g~ 73 (108)
.|..++...++.+|........-+++|...|+.++..++.
T Consensus 15 ~s~~~~~~~~k~iL~~y~~g~~l~~~d~~~l~~lL~~HP~ 54 (104)
T 2k0m_A 15 ARKADALAFMKVMLNRYRPGDIVSTVDGAFLVEALKRHPD 54 (104)
T ss_dssp SSHHHHHHHHHHHHHHSCTTEECCHHHHHHHHHHHHTSTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCc
Confidence 4778888999998886666778999988888888876653
No 151
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=49.33 E-value=33 Score=20.52 Aligned_cols=65 Identities=8% Similarity=0.043 Sum_probs=40.9
Q ss_pred CCCCcHHHHHHHHHHHHHhCCC--CHHHHHHHhCCCCHHHHHHHhhhhcCCCCcccCCCHHHHHHHHHHHhhC
Q psy15548 1 MLKTMTIVDEILKAAVMKYGKN--QWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLM 71 (108)
Q Consensus 1 ~~~Wt~eEd~~L~~~v~~~g~~--~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~~v~~~ 71 (108)
+.++++++-..|++.....+.. --.+|+..+|. +....+ .+-|...+...++++-+.+++.+++|
T Consensus 44 Fsk~~~e~a~~l~e~L~~~~l~~~~~a~IanL~P~-~~dElr-----ali~s~e~~~~~deeL~~IL~~l~ky 110 (113)
T 4ayb_F 44 VEKCDAESAQKVVEELSSIISREDVRAVLASICPI-TPDEVR-----SILIMDSNRTYTSEDIQKIIDIIRKY 110 (113)
T ss_dssp TCSSCHHHHHHHHHHHHTTCCCHHHHHHHHHHCCC-SSCCCC-----TTTTTTCCCCCCCTHHHHHHHHC---
T ss_pred HcCCCHHHHHHHHHHHHHcCCCHHHHHHHHHcCCC-CHHHHH-----HHHHhhccCCCCHHHHHHHHHHHHHH
Confidence 3578888888888777666543 24567777772 332222 23344555668999999999888776
No 152
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=48.36 E-value=16 Score=18.34 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=16.7
Q ss_pred CCCCcHHHHHHHHHHHHHhCC
Q psy15548 1 MLKTMTIVDEILKAAVMKYGK 21 (108)
Q Consensus 1 ~~~Wt~eEd~~L~~~v~~~g~ 21 (108)
|..|+.|-+.+|.+.|..+..
T Consensus 1 mkqwseeverklkefvrrhqe 21 (52)
T 1y66_A 1 MKQWSEEVERKLKEFVRRHQE 21 (52)
T ss_dssp --CCHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHH
Confidence 457999999999999988754
No 153
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=47.95 E-value=30 Score=24.80 Aligned_cols=100 Identities=20% Similarity=0.156 Sum_probs=62.7
Q ss_pred CCcHHHHH-HHHHHHHHhCCCCHHHHHHHhCCCCHHHH---HHHhhhhcCCCCcc-------c----------CCCHHHH
Q psy15548 3 KTMTIVDE-ILKAAVMKYGKNQWSRIASLLHRKSAKQC---KARWFEWLDPSIKK-------T----------EWSREED 61 (108)
Q Consensus 3 ~Wt~eEd~-~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc---~~rw~~~l~~~~~~-------~----------~Wt~eEd 61 (108)
.|.+++|. .|.++++-+|. +=..|-..+.+|++.|- +..|......++.. | .-.++.|
T Consensus 41 ~f~~~~Da~~L~kA~kg~Gt-DE~~iI~IL~~rs~~Qr~~I~~~Y~~~~g~dL~~~lkselsG~fe~~l~~l~~~p~~~D 119 (346)
T 1hm6_A 41 TFNPSSDVEALHKAITVKGV-DEATIIEILTKRTNAQRQQIKAAYLQEKGKPLDEALKKALTGHLEEVALALLKTPAQFD 119 (346)
T ss_dssp SCCHHHHHHHHHHHHSSTTC-CHHHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCC-CHHHHHHHHhcCCHHHHHHHHHHHHHHHCccHHHHHHHhcCccHHHHHHHHhCCcHHHH
Confidence 45676664 56688877776 77888899999998554 55666554432211 1 1123334
Q ss_pred H-HHHHHHhhCCcchhcccc-ccCCCHHHH---HHHHHHHHhHHHhh
Q psy15548 62 E-KLLHLAKLMPTQWRTIAP-IIGRTAAQC---LERYEFLLYRARRK 103 (108)
Q Consensus 62 ~-~L~~~v~~~g~~W~~Ia~-~~gRt~~q~---~~r~~~~~~~~~~~ 103 (108)
. .|..+++-.|.+=..|-. +.+||+.|. +.-|.....+.+.+
T Consensus 120 A~~L~~AmkG~GTde~~LieIL~~Rsn~q~~~Ik~aY~~~y~~~Le~ 166 (346)
T 1hm6_A 120 ADELRAAMKGLGTDEDTLNEILASRTNREIREINRVYKEELKRDLAK 166 (346)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHHHHHTSCCCHHH
T ss_pred HHHHHHHhhccCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhchhHHH
Confidence 3 445566667777666777 778999875 56676665554443
No 154
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=44.16 E-value=30 Score=21.13 Aligned_cols=41 Identities=17% Similarity=0.100 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhCC-cchhccccccCCCHHHHHHHHHHHHhHH
Q psy15548 60 EDEKLLHLAKLMP-TQWRTIAPIIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 60 Ed~~L~~~v~~~g-~~W~~Ia~~~gRt~~q~~~r~~~~~~~~ 100 (108)
-|..|+.++...| ....+||+..|-|+..|..|...+....
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 50 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAG 50 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 3556777777665 5899999988999999999988876654
No 155
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=43.74 E-value=34 Score=20.48 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCC--CcccCCCHHHHHHHH--------HHHhhCCc
Q psy15548 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPS--IKKTEWSREEDEKLL--------HLAKLMPT 73 (108)
Q Consensus 9 d~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~--~~~~~Wt~eEd~~L~--------~~v~~~g~ 73 (108)
-+.|..++++|.. +-..|.+.+- ++.-....--.-.+++. .....|+..+|..|. +++++||.
T Consensus 14 ~~~i~~lMeef~~-DL~sVTqAlL-K~SGel~at~~fL~~~~r~dg~PiWsr~DD~~Lqk~D~~~R~qL~~KfG~ 86 (111)
T 3k6g_A 14 IKIIRQLMEKFNL-DLSTVTQAFL-KNSGELEATSAFLASGQRADGYPIWSRQDDIDLQKDDEDTREALVKKFGA 86 (111)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHH-HTTTCHHHHHHHHHHSSCTTSCCCCCHHHHHHHTCCCHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhh-hHHHHHHHHH-HccccHHHHHHHHhCCCcCCCCcceeeccHHHHhcCCHHHHHHHHHHHhh
Confidence 4677788889986 8888877553 22222222111233432 223469999998876 36677874
No 156
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=42.70 E-value=23 Score=19.97 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhCCcchhccccccCCCHHHHHHH
Q psy15548 58 REEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLER 92 (108)
Q Consensus 58 ~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r 92 (108)
.-|...|.+++..++++-.+.|+.+|=+...+..+
T Consensus 40 ~~Er~~I~~aL~~~~GN~s~AA~~LGISR~TLyrK 74 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRI 74 (81)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHH
Confidence 44666788889999999899888777666665543
No 157
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=40.55 E-value=60 Score=19.61 Aligned_cols=84 Identities=11% Similarity=0.117 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhcCCCCc-----------cc---------CCCHHHHHHHHH
Q psy15548 7 IVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIK-----------KT---------EWSREEDEKLLH 66 (108)
Q Consensus 7 eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~-----------~~---------~Wt~eEd~~L~~ 66 (108)
+-|..|+.++...+.-.+.+||+.++ -+...|+.+.......++- -| .-.+.....+.+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg-~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~~~~~~~~ 87 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILN-TTRQRIARRIDKLKKLGIIRKFTIIPDIDKLGYMYAIVLIKSKVPSDADKVIS 87 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTT-SCHHHHHHHHHHHHHHTSEEEEEEEECTGGGTEEEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEEEEEecCChHHhCCCEEEEEEEEeCCCCHHHHHH
Confidence 44667778888877779999999995 6899999888764322110 01 123444456667
Q ss_pred HHhhCC---------cchhccccccC-CCHHHHHH
Q psy15548 67 LAKLMP---------TQWRTIAPIIG-RTAAQCLE 91 (108)
Q Consensus 67 ~v~~~g---------~~W~~Ia~~~g-Rt~~q~~~ 91 (108)
.+..++ +.+.-+..+.. ++..++..
T Consensus 88 ~l~~~peV~~~~~vtG~~d~~~~v~~~~d~~~l~~ 122 (151)
T 2dbb_A 88 EISDIEYVKSVEKGVGRYNIIVRLLLPKDIKDAEN 122 (151)
T ss_dssp HHTTCTTEEEEEEEESSCSEEEEEEEESSHHHHHH
T ss_pred HHHcCCCeEEEeEecCCCCEEEEEEEcCCHHHHHH
Confidence 776554 35566666666 77777654
No 158
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=38.76 E-value=65 Score=19.51 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhh
Q psy15548 8 VDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEW 46 (108)
Q Consensus 8 Ed~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~ 46 (108)
-|..|+.++...|.-.+.+||+.++ -+...|+.+....
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~lg-~s~~tv~~~l~~L 45 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKITG-LAESTIHERIRKL 45 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHC-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHC-cCHHHHHHHHHHH
Confidence 4566777888777779999999995 6999999988764
No 159
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=38.52 E-value=23 Score=19.47 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHhhCC----cchhccccccCCCHHHHHHHHHHHHhH
Q psy15548 57 SREEDEKLLHLAKLMP----TQWRTIAPIIGRTAAQCLERYEFLLYR 99 (108)
Q Consensus 57 t~eEd~~L~~~v~~~g----~~W~~Ia~~~gRt~~q~~~r~~~~~~~ 99 (108)
|++-|..|+.++...| ..=.+||+..|-+...|..+-..+.+.
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK 58 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 5666788888887776 356788887787777777766555443
No 160
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=38.29 E-value=69 Score=19.66 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhc
Q psy15548 7 IVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWL 47 (108)
Q Consensus 7 eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l 47 (108)
+-|..|+.++...+.-...+||+.++ -+...|+.+.....
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~lg-~s~~tv~~~l~~L~ 49 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERVA-LSPSPCLRRLKQLE 49 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 34566777787777779999999995 68999999887653
No 161
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=38.23 E-value=27 Score=20.96 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=23.0
Q ss_pred CCcccCCCHHHHHHHHHHHhhCCcchhccccccCCCHHHH
Q psy15548 50 SIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQC 89 (108)
Q Consensus 50 ~~~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~ 89 (108)
.+-...=|.+ .|..+....|.+|..+|+-+|=|..++
T Consensus 16 ~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~LGlse~dI 52 (114)
T 2of5_A 16 HILNSSPSDR---QINQLAQRLGPEWEPMVLSLGLSQTDI 52 (114)
T ss_dssp CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTTTCCHHHH
T ss_pred hhhcCCCCHH---HHHHHHHHHhhhHHHHHHHcCCCHHHH
Confidence 3333444444 355556788999999999556554443
No 162
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=37.88 E-value=74 Score=19.95 Aligned_cols=40 Identities=15% Similarity=0.065 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhc
Q psy15548 7 IVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWL 47 (108)
Q Consensus 7 eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l 47 (108)
+-|..|+.++...+.-.+.+||+.++ -+...|+.+.....
T Consensus 17 ~~d~~IL~~L~~~~~~s~~eLA~~lg-lS~~tv~~~l~~L~ 56 (171)
T 2ia0_A 17 DLDRNILRLLKKDARLTISELSEQLK-KPESTIHFRIKKLQ 56 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 34667788888877779999999995 79999999887653
No 163
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=37.69 E-value=41 Score=19.51 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhCCcchhccccccCCCHHHHHHH
Q psy15548 58 REEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLER 92 (108)
Q Consensus 58 ~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r 92 (108)
.-|...|..++..++++-...|+.+|=+...+..+
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LGIsR~TL~rk 91 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMGINRGTLRKK 91 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHH
Confidence 34667778888999999888888878666666544
No 164
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=37.43 E-value=29 Score=20.82 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=21.5
Q ss_pred ccCCCHHHHHHHHHHHhhCCcchhccccccCCCHHHH
Q psy15548 53 KTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQC 89 (108)
Q Consensus 53 ~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~ 89 (108)
...=|.+ .|..+....|.+|..+|+-.|=|..++
T Consensus 19 ~~~~t~~---~l~~Ia~~LG~~Wk~LAR~LGlse~dI 52 (115)
T 2o71_A 19 NSSPSDR---QINQLAQRLGPEWEPMVLSLGLSQTDI 52 (115)
T ss_dssp GSCCCHH---HHHHHHHHCCTTHHHHHHHTTCCHHHH
T ss_pred cCCCCHH---HHHHHHHHHhhhHHHHHHHcCCCHHHH
Confidence 3344444 345556778999999999556444433
No 165
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=36.96 E-value=62 Score=19.45 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhc
Q psy15548 8 VDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWL 47 (108)
Q Consensus 8 Ed~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l 47 (108)
-|..|+.++...+.-.+.+||+.++ -+...|..+.....
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~lg-~s~~tv~~~l~~L~ 42 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREIR-IPKATLSYRIKKLE 42 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHT-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 3566777777777669999999995 69999999887653
No 166
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=36.41 E-value=31 Score=20.65 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=20.2
Q ss_pred HHHHHHHhhCCcchhccccccCCCHHHH
Q psy15548 62 EKLLHLAKLMPTQWRTIAPIIGRTAAQC 89 (108)
Q Consensus 62 ~~L~~~v~~~g~~W~~Ia~~~gRt~~q~ 89 (108)
..|..+....|.+|..+|+.+|=|..++
T Consensus 14 ~~l~~ia~~lg~dWk~LAr~Lg~s~~~I 41 (118)
T 2of5_H 14 SNLLSVAGRLGLDWPAVALHLGVSYREV 41 (118)
T ss_dssp HHHHHHHHTCCTTHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHcCCCHHHH
Confidence 4566666888999999999656555544
No 167
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=36.32 E-value=51 Score=23.08 Aligned_cols=46 Identities=20% Similarity=0.124 Sum_probs=31.7
Q ss_pred CCHHHHH-HHHHHHhhCCcchhcccc-ccCCCHHHH---HHHHHHHHhHHH
Q psy15548 56 WSREEDE-KLLHLAKLMPTQWRTIAP-IIGRTAAQC---LERYEFLLYRAR 101 (108)
Q Consensus 56 Wt~eEd~-~L~~~v~~~g~~W~~Ia~-~~gRt~~q~---~~r~~~~~~~~~ 101 (108)
|++++|. .|..+++-+|.+=..|-. +.+||+.|. +..|..+....+
T Consensus 2 f~~~~Da~~L~kA~kg~Gtde~~ii~IL~~rs~~qr~~I~~~Y~~~~g~dL 52 (308)
T 2hyv_A 2 FDAERDALNIETAIKTKGVDEVTIVNILTNRSNAQRQDIAFAYQRRTKKEL 52 (308)
T ss_dssp CCHHHHHHHHHHHHHSTTCCHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCH
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCccH
Confidence 6676666 566777777877677777 778999874 566666655443
No 168
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=36.29 E-value=59 Score=18.76 Aligned_cols=30 Identities=10% Similarity=-0.022 Sum_probs=23.3
Q ss_pred CcchhccccccCCCHHHHHHHHHHHHhHHH
Q psy15548 72 PTQWRTIAPIIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 72 g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~ 101 (108)
|.+..+||..+|-|...|+.+-...++...
T Consensus 39 ~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR 68 (99)
T 3t72_q 39 DYTLEEVGKQFDVTRERIRQIEAKALRKLR 68 (99)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 568899999889888888887766665543
No 169
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=35.70 E-value=38 Score=22.66 Aligned_cols=46 Identities=15% Similarity=0.002 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHHHh
Q psy15548 55 EWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRARR 102 (108)
Q Consensus 55 ~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~~ 102 (108)
..|+.|-+.|.- + ..|.+-.+||..+|-|...++.|-...+++...
T Consensus 197 ~L~~~erevl~L-~-~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 197 ILSEREKEILRC-I-RKGLSSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp SSCHHHHHHHHH-H-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 466666655444 4 578899999999999999999998888776544
No 170
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=34.88 E-value=77 Score=19.35 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHh-----hCCcchhccccccCCCHHHHHHHHHHHHhHH
Q psy15548 56 WSREEDEKLLHLAK-----LMPTQWRTIAPIIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 56 Wt~eEd~~L~~~v~-----~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~ 100 (108)
-|+.|-..|+.+.. ..+..-..||..+|.++.+|...-..+.++.
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KG 79 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKG 79 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 56777777777765 2345778899889999999988777666554
No 171
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=34.12 E-value=16 Score=22.54 Aligned_cols=33 Identities=9% Similarity=-0.113 Sum_probs=26.1
Q ss_pred hhCCcchhccccccCCCHHHHHHHHHHHHhHHH
Q psy15548 69 KLMPTQWRTIAPIIGRTAAQCLERYEFLLYRAR 101 (108)
Q Consensus 69 ~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~~ 101 (108)
-..|-+-.+||..+|-|...|+.+....++...
T Consensus 106 ~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr 138 (157)
T 2lfw_A 106 AMEGFSPEDAAYLIEVDTSEVETLVTEALAEIE 138 (157)
T ss_dssp SSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 344678899999999999999998877665543
No 172
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=33.50 E-value=34 Score=20.15 Aligned_cols=33 Identities=9% Similarity=0.259 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHhhCCcchhccccccCCCHHHH
Q psy15548 57 SREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQC 89 (108)
Q Consensus 57 t~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~ 89 (108)
+..-+..|..+....|.+|..+|+.+|=+..++
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~Lg~s~~~I 46 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELARELQFSVEDI 46 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHTTCCHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHH
Confidence 455566666777788999999999667555544
No 173
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=32.43 E-value=71 Score=18.09 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=40.3
Q ss_pred CCcHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHH---HHhhhh--cCCCC----cccCCCHHHHHHHHHHHhhC
Q psy15548 3 KTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCK---ARWFEW--LDPSI----KKTEWSREEDEKLLHLAKLM 71 (108)
Q Consensus 3 ~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~---~rw~~~--l~~~~----~~~~Wt~eEd~~L~~~v~~~ 71 (108)
+.|.++-..++.++. -|. .-.+||..++ .+...++ .+|... +.+.. .....++++...|.+++...
T Consensus 17 ~~s~~~r~~i~~~~~-~g~-s~~~ia~~lg-is~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~~~ 91 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA-DGI-RPCVISRQLR-VSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSS 91 (128)
T ss_dssp CCCHHHHHHHHHHHH-TTC-CHHHHHHHHT-CCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTTC
T ss_pred cCCHHHHHHHHHHHH-cCC-CHHHHHHHHC-cCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHHhC
Confidence 578888888888875 454 7899999985 5555443 333221 22211 12346777777777776544
No 174
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=32.36 E-value=32 Score=15.53 Aligned_cols=10 Identities=40% Similarity=1.099 Sum_probs=7.3
Q ss_pred CCHHHHHHHH
Q psy15548 56 WSREEDEKLL 65 (108)
Q Consensus 56 Wt~eEd~~L~ 65 (108)
||++|-...+
T Consensus 1 ~s~~eRq~~L 10 (28)
T 3h8k_B 1 WSADERQRML 10 (28)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7888777655
No 175
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=31.39 E-value=40 Score=21.59 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=23.2
Q ss_pred HHHHHHHhhCCcchhccccccCCCHHHHHH
Q psy15548 62 EKLLHLAKLMPTQWRTIAPIIGRTAAQCLE 91 (108)
Q Consensus 62 ~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~ 91 (108)
+.|+.+-..-|-.|..||+..|+|+.-+-.
T Consensus 16 ~~I~~AK~~KGLTwe~IAe~iG~S~v~vta 45 (156)
T 1dw9_A 16 DAILLSKAKKDLSFAEIADGTGLAEAFVTA 45 (156)
T ss_dssp HHHHHHHHHTTCCHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHH
Confidence 456666677889999999988999875543
No 176
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=31.26 E-value=44 Score=15.33 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHH
Q psy15548 55 EWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERY 93 (108)
Q Consensus 55 ~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~ 93 (108)
..++++-..++.++ ..|..-.+||+..|-+...+....
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 45667666666665 457788899998888877776543
No 177
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Probab=30.78 E-value=1.1e+02 Score=24.03 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=63.2
Q ss_pred CCcHHHH-HHHHHHHHHhCCCCHHHHHHHhCCCCHH---HHHHHhhhhcCCCCcc-------cCC---------C-HHHH
Q psy15548 3 KTMTIVD-EILKAAVMKYGKNQWSRIASLLHRKSAK---QCKARWFEWLDPSIKK-------TEW---------S-REED 61 (108)
Q Consensus 3 ~Wt~eEd-~~L~~~v~~~g~~~W~~Ia~~~~~R~~~---qc~~rw~~~l~~~~~~-------~~W---------t-~eEd 61 (108)
.|++++| +.|.++++-+|. +=..|-..+++|++. +++..|......++-. |.| + .+-|
T Consensus 361 ~f~~~~Da~~L~kA~kG~Gt-DE~~iI~IL~~rs~~QR~~I~~~Y~~~~gkdL~~~LkselsG~fe~~i~~l~~~p~~~D 439 (672)
T 1m9i_A 361 DFNPDADAKALRKAMKGLGT-DEDTIIDIITHRSNVQRQQIRQTFKSHFGRDLMTDLKSEISGDLARLILGLMMPPAHYD 439 (672)
T ss_dssp TCCHHHHHHHHHHHHSSSSC-CHHHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCTHHHHHHHHHHSCHHHHH
T ss_pred CCChHHHHHHHHHHhcCCCC-CHHHHHHHHhcCCHHHHHHHHHHHHHHhCchHHHHHHHHcCCCHHHHHHHHCCCHHHHH
Confidence 3566555 556788887886 888999999999984 4566777655433211 111 1 2333
Q ss_pred H-HHHHHHhhCCcchhcccc-ccCCCHHHH---HHHHHHHHhHHHhhh
Q psy15548 62 E-KLLHLAKLMPTQWRTIAP-IIGRTAAQC---LERYEFLLYRARRKA 104 (108)
Q Consensus 62 ~-~L~~~v~~~g~~W~~Ia~-~~gRt~~q~---~~r~~~~~~~~~~~~ 104 (108)
. .|..+++-.|.+=..+-+ +.+||+.++ +.-|.......+.++
T Consensus 440 A~~l~~A~kg~gTde~~LiEIL~tRsn~ei~~ik~aY~~~y~~sLe~d 487 (672)
T 1m9i_A 440 AKQLKKAMEGAGTDEKALIEILATRTNAEIRAINEAYKEDYHKSLEDA 487 (672)
T ss_dssp HHHHHHHHSSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHhhhcCCHHHHHHHHHHHHHHHCcCHHHH
Confidence 3 344556666766666667 779999876 455776665555443
No 178
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=30.72 E-value=64 Score=22.68 Aligned_cols=49 Identities=22% Similarity=0.150 Sum_probs=34.6
Q ss_pred CCCHHHHH-HHHHHHhhCCcchhcccc-ccCCCHHHH---HHHHHHHHhHHHhh
Q psy15548 55 EWSREEDE-KLLHLAKLMPTQWRTIAP-IIGRTAAQC---LERYEFLLYRARRK 103 (108)
Q Consensus 55 ~Wt~eEd~-~L~~~v~~~g~~W~~Ia~-~~gRt~~q~---~~r~~~~~~~~~~~ 103 (108)
.+++++|. .|..+++-.|.+=..|-. +.+||+.|. +..|.....+.+-+
T Consensus 16 ~~~~~~Da~~L~kA~kG~GtdE~~li~IL~~rs~~qr~~I~~~Y~~~~g~~L~~ 69 (322)
T 2zhj_A 16 GFNATEDAQVLRKAMKGLGTDEDAIIGVLACRNTAQRQEIRTAYKSTIGRDLLE 69 (322)
T ss_dssp TCCHHHHHHHHHHHHSSSSCCHHHHHHHHTTSCHHHHHHHHHHHHHHHCSCHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCchHHH
Confidence 58888777 455677778887777778 788999875 56677665554433
No 179
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=29.58 E-value=82 Score=17.91 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=31.8
Q ss_pred cccCCCHHHHHHHHHHHhhCCc---chh-------------cccc-c---cC--CCHHHHHHHHHHHHhH
Q psy15548 52 KKTEWSREEDEKLLHLAKLMPT---QWR-------------TIAP-I---IG--RTAAQCLERYEFLLYR 99 (108)
Q Consensus 52 ~~~~Wt~eEd~~L~~~v~~~g~---~W~-------------~Ia~-~---~g--Rt~~q~~~r~~~~~~~ 99 (108)
..+.|+++=+..+++++..|.. ..- -||. + .| ||..||..|-+.+-+.
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHH
Confidence 4578999999999999988763 111 1222 1 12 6788888877765544
No 180
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Probab=29.52 E-value=68 Score=22.59 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=33.8
Q ss_pred CCCHHHHH-HHHHHHhhCCcchhcccc-ccCCCHHHH---HHHHHHHHhHHHh
Q psy15548 55 EWSREEDE-KLLHLAKLMPTQWRTIAP-IIGRTAAQC---LERYEFLLYRARR 102 (108)
Q Consensus 55 ~Wt~eEd~-~L~~~v~~~g~~W~~Ia~-~~gRt~~q~---~~r~~~~~~~~~~ 102 (108)
.+++++|. .|..+++-+|.+=..|-. +.+||+.|. +..|.....+.+-
T Consensus 17 ~f~~~~Da~~L~kA~kG~Gtde~~li~IL~~rs~~qr~~I~~~Y~~~~g~dL~ 69 (323)
T 1axn_A 17 DFSPSVDAEAIQKAIRGIGTDEKMLISILTERSNAQRQLIVKEYQAAYGKELK 69 (323)
T ss_dssp TCCHHHHHHHHHHHHSSSSCCHHHHHHHHTTSCHHHHHHHHHHHHHHHSCCHH
T ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHH
Confidence 48888877 555677777877677777 788999875 5667666554443
No 181
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=29.43 E-value=96 Score=18.68 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhh
Q psy15548 8 VDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEW 46 (108)
Q Consensus 8 Ed~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~ 46 (108)
-|..|+.++...+.-...+||+.++ -+...|+.+....
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~lg-~s~~tv~~~l~~L 46 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQFG-VSPETIHVRVEKM 46 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHT-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHC-cCHHHHHHHHHHH
Confidence 4567777888877779999999995 6999999888664
No 182
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=28.87 E-value=60 Score=18.06 Aligned_cols=41 Identities=10% Similarity=0.166 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhCC----cchhccccccCCCHHHHHHHHHHHHh
Q psy15548 58 REEDEKLLHLAKLMP----TQWRTIAPIIGRTAAQCLERYEFLLY 98 (108)
Q Consensus 58 ~eEd~~L~~~v~~~g----~~W~~Ia~~~gRt~~q~~~r~~~~~~ 98 (108)
.+-|..|+.++...| -.=.+||+..|-+...|..+-..+.+
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455677888887776 35677888778777777776655544
No 183
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=28.54 E-value=12 Score=24.15 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred CcchhccccccCCCHHHHHHHHHHHHhH
Q psy15548 72 PTQWRTIAPIIGRTAAQCLERYEFLLYR 99 (108)
Q Consensus 72 g~~W~~Ia~~~gRt~~q~~~r~~~~~~~ 99 (108)
|-+..+||..+|-|...|+.+....++.
T Consensus 214 g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 214 DQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ----------------------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4578899998888888888877665543
No 184
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=28.02 E-value=49 Score=16.39 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHH
Q psy15548 6 TIVDEILKAAVMK 18 (108)
Q Consensus 6 ~eEd~~L~~~v~~ 18 (108)
.+||+.|.+++..
T Consensus 26 E~E~~llrKAIaE 38 (46)
T 2rr9_C 26 EEEEELLRKAIAE 38 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678888887764
No 185
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=27.26 E-value=1e+02 Score=18.18 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhh
Q psy15548 8 VDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEW 46 (108)
Q Consensus 8 Ed~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~ 46 (108)
-|..++.++...+.-.+.+||..+ +-+...|+.+....
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L 42 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL-GISETAVRKRVKAL 42 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 355666777777766999999999 57999998887664
No 186
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=26.96 E-value=53 Score=16.19 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q psy15548 6 TIVDEILKAAVMK 18 (108)
Q Consensus 6 ~eEd~~L~~~v~~ 18 (108)
.+||+.|.+++..
T Consensus 29 E~EdellrKAIaE 41 (45)
T 3a1q_C 29 EKEEELLRKAIAE 41 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4677788877754
No 187
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=24.81 E-value=1.2e+02 Score=18.15 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHhhhhc
Q psy15548 8 VDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWL 47 (108)
Q Consensus 8 Ed~~L~~~v~~~g~~~W~~Ia~~~~~R~~~qc~~rw~~~l 47 (108)
-|..|+.++...+.-...+||+.++ -+...|+.+-....
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~lg-~s~~tv~~~l~~L~ 44 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKIK-LSPPSVTERVRQLE 44 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHT-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 3557777777777779999999995 69999998886653
No 188
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=24.09 E-value=73 Score=18.60 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=17.8
Q ss_pred HHHHHhhCCcchhccccccCCCHHHH
Q psy15548 64 LLHLAKLMPTQWRTIAPIIGRTAAQC 89 (108)
Q Consensus 64 L~~~v~~~g~~W~~Ia~~~gRt~~q~ 89 (108)
|-.+....|.+|..+|+.+|=+..++
T Consensus 21 ~~~ia~~lg~~Wk~LAr~Lg~~~~~I 46 (110)
T 1wxp_A 21 IEVFANKLGEQWKILAPYLEMKDSEI 46 (110)
T ss_dssp HHHHHHHHTTTHHHHTTTTTCCHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhCCCHHHH
Confidence 44444566899999999667555544
No 189
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=23.67 E-value=1.2e+02 Score=19.69 Aligned_cols=45 Identities=13% Similarity=0.013 Sum_probs=36.1
Q ss_pred cCCCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHH
Q psy15548 54 TEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 54 ~~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~ 100 (108)
...|+.|-+.|.- + ..|..-.+||..+|-|...++.+-.++.++.
T Consensus 172 ~~Lt~~e~~vl~~-~-~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 172 AWLDPKEATYLRW-I-AVGKTMEEIADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 4588888877644 4 4688889999988999999999988877764
No 190
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Probab=23.09 E-value=1.4e+02 Score=23.51 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=61.8
Q ss_pred CCcHHHH-HHHHHHHHHhCCCCHHHHHHHhCCCCHH---HHHHHhhhhcCCCCcc---cCCC--------------HHHH
Q psy15548 3 KTMTIVD-EILKAAVMKYGKNQWSRIASLLHRKSAK---QCKARWFEWLDPSIKK---TEWS--------------REED 61 (108)
Q Consensus 3 ~Wt~eEd-~~L~~~v~~~g~~~W~~Ia~~~~~R~~~---qc~~rw~~~l~~~~~~---~~Wt--------------~eEd 61 (108)
.|++++| +.|.++++-+|. +=..|-..+++|++. +++..|......++-. ...| .+=|
T Consensus 18 ~f~~~~Da~~L~kA~kG~Gt-DE~~iI~IL~~rs~~QR~~I~~~Y~~~~gkdL~~~LkselsG~fe~~l~~l~~~p~~~d 96 (672)
T 1m9i_A 18 GFDPNQDAEALYTAMKGFGS-DKEAILDIITSRSNRQRQEVCQSYKSLYGKDLIADLKYELTGKFERLIVGLMRPPAYCD 96 (672)
T ss_dssp SCCHHHHHHHHHHHTSSSSC-CHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHH
T ss_pred CCChHHHHHHHHHHhcCCCC-CHHHHHHHHhcCCHHHHHHHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHcCCHHHHH
Confidence 4577555 556788887886 789999999999984 4667777655443211 1111 1222
Q ss_pred H-HHHHHHhhCCcchhcccc-ccCCCHHHH---HHHHHHHHhHHHhhh
Q psy15548 62 E-KLLHLAKLMPTQWRTIAP-IIGRTAAQC---LERYEFLLYRARRKA 104 (108)
Q Consensus 62 ~-~L~~~v~~~g~~W~~Ia~-~~gRt~~q~---~~r~~~~~~~~~~~~ 104 (108)
. .|..+++-.|.+=..+-+ +.+||+.++ +.-|.......+.++
T Consensus 97 A~~l~~A~kG~gTde~~LiEIl~tRsn~ei~~ik~aY~~~y~~sLe~d 144 (672)
T 1m9i_A 97 AKEIKDAISGIGTDEKCLIEILASRTNEQMHQLVAAYKDAYERDLEAD 144 (672)
T ss_dssp HHHHHHHHSSSSCCHHHHHHHHHHCCHHHHHHHHHHHHHHSCSCHHHH
T ss_pred HHHHHHHhcCCCCchHHHHHHHHcCCHHHHHHHHHHHHHHhCcchHHH
Confidence 2 233455555656455556 678999876 455776665555444
No 191
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=23.01 E-value=1.2e+02 Score=17.80 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=36.2
Q ss_pred CCcHHHHHHHHHHHHHhCCCCHHHHHHHhC-CCCHHHHHHHhhhhcCC
Q psy15548 3 KTMTIVDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWFEWLDP 49 (108)
Q Consensus 3 ~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~~~-~R~~~qc~~rw~~~l~~ 49 (108)
.|-..=|..++.++...|...-.+||..+. +-+...++.|-...-..
T Consensus 9 ~~md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 9 SWMTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp TTCCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred hhcCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 465566777778888888889999999884 57899999988765443
No 192
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=22.66 E-value=75 Score=16.33 Aligned_cols=37 Identities=14% Similarity=0.036 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHH
Q psy15548 55 EWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLER 92 (108)
Q Consensus 55 ~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r 92 (108)
....-|...|.+++..+ ++-...|+.+|=+...+..+
T Consensus 17 ~l~~~Er~~I~~aL~~~-gn~~~aA~~LGIsr~tL~rk 53 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY-PSTRKLAQRLGVSHTAIANK 53 (61)
T ss_dssp SCSHHHHHHHHHHHHHS-CSHHHHHHHTTSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CCHHHHHHHhCCCHHHHHHH
Confidence 35566788888899888 67778888777555555443
No 193
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=22.07 E-value=25 Score=19.87 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhCCcchhccccccCCCHHHH
Q psy15548 58 REEDEKLLHLAKLMPTQWRTIAPIIGRTAAQC 89 (108)
Q Consensus 58 ~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~ 89 (108)
.+|-..|+. |.+|..+|..+|=+...+
T Consensus 12 r~~l~~lL~-----g~dW~~LA~~Lg~~~~~I 38 (85)
T 1ngr_A 12 REEVEKLLN-----GDTWRHLAGELGYQPEHI 38 (85)
T ss_dssp THHHHHHSC-----TTHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHhC-----cCCHHHHHHHcCCCHHHH
Confidence 345555555 999999999666555444
No 194
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=21.70 E-value=1.3e+02 Score=19.67 Aligned_cols=47 Identities=11% Similarity=0.044 Sum_probs=37.3
Q ss_pred cccCCCHHHHHHHHHHHhhCCcchhccccccCCCHHHHHHHHHHHHhHH
Q psy15548 52 KKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRA 100 (108)
Q Consensus 52 ~~~~Wt~eEd~~L~~~v~~~g~~W~~Ia~~~gRt~~q~~~r~~~~~~~~ 100 (108)
.....|+.|-+.|.-+ ..|..=.+||..+|-|...++.+-.++.++.
T Consensus 172 ~~~~Lt~re~~vl~~~--~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 172 SNVRLTARETEMLKWT--AVGKTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp GGCCCCHHHHHHHHHH--HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3457888888776554 4678888999989999999999888887764
No 195
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=20.05 E-value=1.5e+02 Score=17.44 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=40.6
Q ss_pred CCCcHHHHHHHHHHHHHhCCC--CHHHHHHHhCCCCHHHHHHHhhhhcCCCCcccCCCHHHHHHHHHHHhhC
Q psy15548 2 LKTMTIVDEILKAAVMKYGKN--QWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLM 71 (108)
Q Consensus 2 ~~Wt~eEd~~L~~~v~~~g~~--~W~~Ia~~~~~R~~~qc~~rw~~~l~~~~~~~~Wt~eEd~~L~~~v~~~ 71 (108)
.++++++-..|.+.....|-. --.+|+..+| .+....+.=+ |.... ++|-+.+++.+.+|
T Consensus 45 sk~~~e~a~~l~e~L~~~~l~e~~a~~I~nl~P-~t~dElraii-----~~~~~----~eel~~ILd~l~k~ 106 (107)
T 1go3_F 45 AKLDKEEAKKLVEELISLGIDEKTAVKIADILP-EDLDDLRAIY-----YKREL----PENAEEILEIVRKY 106 (107)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHCC-CSHHHHHHHS-----TTSCC----CTTHHHHHHHHTTC
T ss_pred hCCCHHHHHHHHHHHHhCCCCHHHHHHHHHhCC-CCHHHHHHHH-----hcccC----cHHHHHHHHHHHHc
Confidence 567888888888766666643 3677888888 6887777633 23332 66667778777665
Done!