RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15548
(108 letters)
>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell
Division Cycle 5-Like Protein repeat II. In humans,
cell division cycle 5-like protein (CDC5) functions in
pre-mRNA splicing in cell cycle control. The
DNA-binding, myb-like domain of CDC5 is a member of the
SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR
and TFIIIB', several factors that share this domain. The
SANT domain resembles the 3 alpha-helix bundle of
DNA-binding Myb domains and is found in a diverse set of
proteins.
Length = 53
Score = 102 bits (255), Expect = 2e-30
Identities = 44/52 (84%), Positives = 47/52 (90%)
Query: 49 PSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRA 100
PSIKKTEW+REEDEKLLHLAKL+PTQWRTIAPI+GRTA QCLERY LL A
Sbjct: 1 PSIKKTEWTREEDEKLLHLAKLLPTQWRTIAPIVGRTAQQCLERYNKLLDEA 52
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription
factors and mRNA splicing factors [Transcription / RNA
processing and modification / Cell division and
chromosome partitioning].
Length = 512
Score = 107 bits (270), Expect = 6e-29
Identities = 46/86 (53%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLA 68
DE LKA V K G N WS++ASLL + KQ RW L+P +KK WS EEDE+L+ L
Sbjct: 28 DEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLD 87
Query: 69 KLMPTQWRTIAPII-GRTAAQCLERY 93
K + TQW TIA RTA QC+ERY
Sbjct: 88 KELGTQWSTIADYKDRRTAQQCVERY 113
Score = 29.4 bits (66), Expect = 0.30
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEW--LDPSIKKTEWSREEDEKLL 65
++ L V+++G W+ I LL R C+ RW ++ ++K+ WS EE+E L
Sbjct: 299 EQELAKLVVEHGG-SWTEIGKLLGRMPND-CRDRWRDYVKCGDTLKRNRWSIEEEELLD 355
Score = 25.9 bits (57), Expect = 5.0
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 51 IKKTEWSREEDEKLLHLAK-LMPTQWRTIAPIIG-RTAAQCLERYEF 95
K W R EDE L L K L P W +A ++ T Q R+
Sbjct: 18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNN 64
Score = 25.5 bits (56), Expect = 6.6
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 22 NQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDE 62
QWS IA R++A+QC R+ L+ T S+ +
Sbjct: 92 TQWSTIADYKDRRTAQQCVERYVNTLEDL-SSTHDSKLQRR 131
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain. This
family contains the DNA binding domains from Myb
proteins, as well as the SANT domain family.
Length = 59
Score = 50.8 bits (122), Expect = 5e-10
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKL 64
DE L V KYG N W +IA L R + C+ RW L P + W++EED++L
Sbjct: 6 DEKLLKLVEKYG-NDWKQIAEELGR-TPSACRDRWRRKLRPKRSRGPWTKEEDQRL 59
Score = 38.8 bits (91), Expect = 2e-05
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 56 WSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRARRK 103
W+ EEDEKLL L + W+ IA +GRT + C +R+ L R +R
Sbjct: 1 WTEEEDEKLLKLVEKYGNDWKQIAEELGRTPSACRDRWRRKL-RPKRS 47
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain. This
family contains the DNA binding domains from Myb
proteins, as well as the SANT domain family.
Length = 47
Score = 50.2 bits (121), Expect = 5e-10
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWL 47
DE+L AV K+G WS+IA L ++ QCK RW +L
Sbjct: 9 DELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47
Score = 36.3 bits (85), Expect = 1e-04
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 53 KTEWSREEDEKLLHLAKLMPT-QWRTIAPII-GRTAAQCLERY 93
+ W+ EEDE L+ K W IA + GRT QC R+
Sbjct: 1 RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRW 43
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional.
Length = 249
Score = 52.4 bits (125), Expect = 2e-09
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 9 DEILKAAVMKYGKNQWSRI---ASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLL 65
DEIL + + K G+ +W + A LL + K C+ RW +L PS+K+ + +E++ +L
Sbjct: 33 DEILVSFIKKEGEGRWRSLPKRAGLL--RCGKSCRLRWMNYLRPSVKRGGITSDEEDLIL 90
Query: 66 HLAKLMPTQWRTIA-PIIGRT 85
L +L+ +W IA I GRT
Sbjct: 91 RLHRLLGNRWSLIAGRIPGRT 111
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding
domains.
Length = 49
Score = 46.8 bits (112), Expect = 1e-08
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDP 49
DE+L V KYGKN W +IA L ++A+QC+ RW L P
Sbjct: 9 DELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
Score = 38.4 bits (90), Expect = 2e-05
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 53 KTEWSREEDEKLLHLAKLMPT-QWRTIAPIIG-RTAAQCLERYEFLLYR 99
K EW+ EEDE L+ L K W IA + RTA QC ER+ LL
Sbjct: 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding
domains. Tandem copies of the domain bind telomeric DNA
tandem repeatsas part of the capping complex. Binding
is sequence dependent for repeats which contain the G/C
rich motif [C2-3 A (CA)1-6]. The domain is also found
in regulatory transcriptional repressor complexes where
it also binds DNA.
Length = 45
Score = 46.0 bits (110), Expect = 3e-08
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWL 47
DE+L AV KYGKN W +IA L ++ KQC+ RW L
Sbjct: 7 DELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45
Score = 35.6 bits (83), Expect = 3e-04
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 55 EWSREEDEKLLHL-AKLMPTQWRTIAPIIG-RTAAQCLERYEFLL 97
W+ EEDE LL K W IA + RT QC ER+ LL
Sbjct: 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional.
Length = 459
Score = 46.1 bits (109), Expect = 5e-07
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 9 DEILKAAVMKYGKNQWSRIASL--LHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLH 66
DE L + KYG WS + L R K C+ RW +L P +K+ +S++E+ ++
Sbjct: 22 DEKLLRHITKYGHGCWSSVPKQAGLQR-CGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80
Query: 67 LAKLMPTQWRTIAP-IIGRT 85
L ++ +W IA + GRT
Sbjct: 81 LHAVLGNRWSQIAAQLPGRT 100
Score = 28.0 bits (62), Expect = 0.99
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 51 IKKTEWSREEDEKLL-HLAKLMPTQWRTIAPIIG--RTAAQCLERY 93
++K WS EEDEKLL H+ K W ++ G R C R+
Sbjct: 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRW 57
>gnl|CDD|178528 PLN02940, PLN02940, riboflavin kinase.
Length = 382
Score = 34.8 bits (80), Expect = 0.004
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 1 MLKTMTIVDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREE 60
+L T IV ++LKA ++KYGK QW R++ K E ++
Sbjct: 22 LLNTDGIVSDVLKAFLVKYGK-QWDG------REAQKIVGKTPLEAAATVVEDYGLPCST 74
Query: 61 DEKLLHLAKLMPTQWRTIAPIIG 83
DE + L+ QW I + G
Sbjct: 75 DEFNSEITPLLSEQWCNIKALPG 97
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like
DNA-binding domains of the SANT/myb-like family. Human
telomere repeat binding factors, TRF1 and TRF2,
function as part of the 6 component shelterin complex.
TRF2 binds DNA and recruits RAP1 (via binding to the
RAP1 protein c-terminal (RCT)) and TIN2 in the
protection of telomeres from DNA repair machinery.
Metazoan shelterin consists of 3 DNA binding proteins
(TRF2, TRF1, and POT1) and 3 recruited proteins that
bind to one or more of these DNA-binding proteins
(RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is
an orthlog and binds RAP1. Human TRF1 and TRF2 bind
double-stranded DNA. hTRF2 consists of a basic
N-terminus, a TRF homology domain, the RAP1 binding
motif (RBM), the TIN2 binding motif (TBM) and a
myb-like DNA binding domain, SANT, named after 'SWI3,
ADA2, N-CoR and TFIIIB', several factors that share
this domain. Tandem copies of the domain bind telomeric
DNA tandem repeats as part of the capping complex. The
single myb-like domain of TRF-type proteins is similar
to the tandem myb_like domains found in yeast RAP1.
Length = 50
Score = 31.8 bits (73), Expect = 0.008
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 9 DEILKAAVMKYGKNQWSRI---ASLLHRKSAKQCKARW 43
DE L V KYG W++I ++ +++ K +W
Sbjct: 8 DEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKW 45
>gnl|CDD|213874 TIGR03857, F420_MSMEG_2249, probable F420-dependent oxidoreductase,
MSMEG_2249 family. Coenzyme F420 has a limited
phylogenetic distribution, including methanogenic
archaea, Mycobacterium tuberculosis and related species,
Colwellia psychrerythraea 34H, Rhodopseudomonas
palustris HaA2, and others. Partial phylogenetic
profiling identifies protein subfamilies, within the
larger family called luciferase-like monooxygenanases
(pfam00296), that appear only in F420-positive genomes
and are likely to be F420-dependent. This model
describes a distinctive subfamily, found only in
F420-biosynthesizing members of the Actinobacteria of
the bacterial luciferase-like monooxygenase (LLM)
superfamily [Unknown function, Enzymes of unknown
specificity].
Length = 329
Score = 31.7 bits (72), Expect = 0.054
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 62 EKLLHLAKLMPTQWRTIAPIIGRTAAQCLER 92
E+L+ +A L+P +W + IG +AAQC R
Sbjct: 278 EQLVDVADLIPDEWLEASAAIG-SAAQCARR 307
>gnl|CDD|212556 cd11658, SANT_DMAP1_like, SANT/myb-like domain of Human Dna
Methyltransferase 1 Associated Protein 1-like. These
proteins are members of the SANT/myb group. SANT is
named after 'SWI3, ADA2, N-CoR and TFIIIB', several
factors that share this domain. The SANT domain
resembles the 3 alpha-helix bundle of the DNA-binding
Myb domains and is found in a diverse set of proteins.
Length = 46
Score = 27.0 bits (60), Expect = 0.53
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 56 WSREEDEKLLHLAKLMPTQWRTIA----PIIGRTAAQCLERY 93
W++EE + L L K +W I GR+ E+Y
Sbjct: 1 WTKEETDYLFDLVKRFDLRWNVILDRYPFQKGRSVEDLKEKY 42
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8
[Chromatin structure and dynamics / Transcription].
Length = 531
Score = 27.9 bits (62), Expect = 0.92
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 47 LDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLERY 93
K WSR+E LL ++ W +A +G +T QC+ +
Sbjct: 274 SLLIRDKN-WSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHF 320
>gnl|CDD|176156 cd08467, PBP2_SyrM, The C-terminal substrate binding of LysR-type
symbiotic regulator SyrM, which activates expression of
nodulation gene NodD3, contains the type 2 periplasmic
binding fold. Rhizobium is a nitrogen fixing bacteria
present in the roots of leguminous plants, which fixes
atmospheric nitrogen to the soil. Most Rhizobium species
possess multiple nodulation (nod) genes for the
development of nodules. For example, Rhizobium meliloti
possesses three copies of nodD genes. NodD1 and NodD2
activate nod operons when Rhizobium is exposed to
inducers synthesized by the host plant, while NodD3 acts
independent of plant inducers and requires the symbiotic
regulator SyrM for nod gene expression. SyrM activates
the expression of the regulatory nodulation gene nodD3.
In turn, NodD3 activates expression of syrM. In
addition, SyrM is involved in exopolysaccharide
synthesis. This substrate-binding domain shows
significant homology to the type 2 periplasmic binding
proteins (PBP2), which are responsible for the uptake of
a variety of substrates such as phosphate, sulfate,
polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis.
Length = 200
Score = 27.8 bits (62), Expect = 1.1
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 54 TEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLER 92
EW+ ++ L H+A P + I R L+R
Sbjct: 87 QEWTLDDFATLRHVAIAPPGRLF--GGIYKRLENLGLKR 123
>gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family
domain in Subtilisin-like proteins. This family is a
member of the Peptidases S8 or Subtilases serine endo-
and exo-peptidase clan. They have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The
stability of subtilases may be enhanced by calcium, some
members have been shown to bind up to 4 ions via binding
sites with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 291
Score = 27.3 bits (61), Expect = 1.5
Identities = 7/25 (28%), Positives = 8/25 (32%), Gaps = 3/25 (12%)
Query: 79 APIIGRTAAQCLERYEF---LLYRA 100
AP+ R AA RA
Sbjct: 260 APLAARLAAGLFAELPELSPETIRA 284
>gnl|CDD|213402 cd12203, GT1, GT1, myb-like, SANT family. GT-1, a myb-like
protein, is one of the GT trihelix transcription
factors. GT-1 binds the GT cis-element of rbcS-3A, a
light-induced gene, as a dimer. Arabidopsis GT-1 is a
trans-activator and acts in the stabilization of
components of the transcrtiption pre-initiation complex
comprised of TFIIA-TBP-TATA. The isolated GT-1
DNA-binding domain is sufficient to bind DNA. This
region closely resemble the myb domain, but with longer
helices. It has been proposed that GT-1 may respond to
light signals via calcium-dependent phosphorylation to
create a light-modulated molecular switch. These
proteins are members of the SANT/myb group. SANT is
named after 'SWI3, ADA2, N-CoR and TFIIIB', several
factors that share this domain. The SANT domain
resembles the 3 alpha-helix bundle of the DNA-binding
Myb domains and is found in a diverse set of proteins.
Length = 66
Score = 26.1 bits (58), Expect = 1.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 21 KNQWSRIASLLHRK----SAKQCKARWFEWLDPSIKKTE 55
K W IA+ + SAKQCK +W E L+ KK +
Sbjct: 29 KALWEEIAAKMRELGYNRSAKQCKEKW-ENLNKYYKKVK 66
>gnl|CDD|204335 pfam09905, DUF2132, Uncharacterized conserved protein (DUF2132).
This domain, found in various hypothetical prokaryotic
proteins, has no known function.
Length = 64
Score = 25.5 bits (57), Expect = 2.2
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 7/24 (29%)
Query: 48 DPSIK-------KTEWSREEDEKL 64
+PSIK KT W+RE+ E L
Sbjct: 39 NPSIKSSLKFLRKTPWAREKVENL 62
>gnl|CDD|135648 PRK05898, dnaE, DNA polymerase III DnaE; Validated.
Length = 971
Score = 26.7 bits (59), Expect = 2.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 2 LKTMTIVDEILKAAVMKYGK 21
LK +TI+D +LK K
Sbjct: 488 LKNLTIIDNVLKLIKENQNK 507
>gnl|CDD|236542 PRK09500, potC, spermidine/putrescine ABC transporter membrane
protein; Reviewed.
Length = 256
Score = 25.7 bits (57), Expect = 5.1
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 77 TIAPIIGRTAAQCLERYEF 95
T A +IG A L RY F
Sbjct: 71 TFATLIGSLTAVALYRYRF 89
>gnl|CDD|225064 COG2153, ElaA, Predicted acyltransferase [General function
prediction only].
Length = 155
Score = 25.4 bits (56), Expect = 5.5
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 56 WSREEDEKLLHLAKLMPTQWRTIAPIIGRTA 86
D +L+ A+L+P IGR
Sbjct: 53 LGWTPDGELVAYARLLPPGAEYEEVSIGRVI 83
>gnl|CDD|234375 TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase,
nitrilotriacetate monooxygenase family. This model
represents a distinctive clade, in which all
characterized members are FMN-binding, within the larger
family of luciferase-like monooxygenases (LLM), among
which there are both FMN- and F420-binding enzymes. A
well-characterized member is nitrilotriacetate
monooxygenase from Aminobacter aminovorans
(Chelatobacter heintzii), where nitrilotriacetate is a
chelating agent used in detergents [Unknown function,
Enzymes of unknown specificity].
Length = 422
Score = 25.5 bits (57), Expect = 5.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 78 IAPIIGRTAAQCLERYEFL 96
I PI+GRT A+ +Y L
Sbjct: 268 ITPIVGRTEAEARAKYAEL 286
>gnl|CDD|236696 PRK10458, PRK10458, DNA cytosine methylase; Provisional.
Length = 467
Score = 25.4 bits (56), Expect = 6.7
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 18/74 (24%)
Query: 1 MLKTMTIVD-EILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSRE 59
+ K + I D + L A + G+N WSR A L RW K+ W R
Sbjct: 23 LEKLLEIYDVKTLAAQLNGVGENHWSR-AIL----------KRWLA------GKSAWHRL 65
Query: 60 EDEKLLHLAKLMPT 73
+ + HL L+P
Sbjct: 66 SEAEFAHLQTLLPK 79
>gnl|CDD|226712 COG4261, COG4261, Predicted acyltransferase [General function
prediction only].
Length = 309
Score = 25.5 bits (56), Expect = 6.9
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 53 KTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLYRARRKAVQ 106
T W+R + L +LM WR + IGR + Y L A R+A +
Sbjct: 1 STHWARRSERGGLWGMRLMLLIWRLLGRTIGRALLYPIVAYFLLTASAARRASR 54
>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain.
This presumed domain appears to be related to other
Myb/SANT-like DNA binding domains. In particular
pfam10545 seems most related. This family is greatly
expanded in plants and appears in several proteins
annotated as transposon proteins.
Length = 84
Score = 24.2 bits (53), Expect = 9.2
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 20 GKNQWSRIASLLHR----KSAKQCKARW 43
K+ W IA + +SA+QCK +W
Sbjct: 31 NKHVWEEIAEKMAERGYNRSAEQCKEKW 58
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.132 0.413
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,560,524
Number of extensions: 449279
Number of successful extensions: 588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 54
Length of query: 108
Length of database: 10,937,602
Length adjustment: 73
Effective length of query: 35
Effective length of database: 7,699,760
Effective search space: 269491600
Effective search space used: 269491600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)