RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15548
(108 letters)
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 86
Score = 53.4 bits (128), Expect = 2e-11
Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 9 DEILKAAVMKYGKNQ-----WSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEK 63
DE + V K + + I+ + + + R+ +L ++ + +
Sbjct: 9 DEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKL 68
Query: 64 LLHL-AKLMPTQ 74
+ L+ T+
Sbjct: 69 VRDDDGNLIKTK 80
Score = 32.2 bits (73), Expect = 0.002
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 53 KTEWSREEDEKLLHLAKLMPTQ------WRTIAPII-GRTAAQCLERY 93
K ++ EEDE +L + + PT+ + I+ + T R+
Sbjct: 1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRF 48
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 48.2 bits (115), Expect = 8e-10
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDP 49
DE LK V + G + W IA+ L ++ QC+ RW + L+P
Sbjct: 9 DEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 49
Score = 39.4 bits (92), Expect = 2e-06
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 53 KTEWSREEDEKLLHL-AKLMPTQWRTIAPII-GRTAAQCLERY 93
KT W+REEDEKL L + W+ IA + RT QC R+
Sbjct: 1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 43
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 52
Score = 47.0 bits (112), Expect = 2e-09
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDP 49
D+ L V KYG +WS IA L + KQC+ RW L+P
Sbjct: 11 DQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 38.9 bits (91), Expect = 3e-06
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 51 IKKTEWSREEDEKLLHL-AKLMPTQWRTIAPII-GRTAAQCLERY 93
+ K W++EED++L+ L K P +W IA + GR QC ER+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW 45
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 44.9 bits (106), Expect = 3e-08
Identities = 10/55 (18%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEK 63
E+ + + K+G+ W++I+ L+ ++ Q K+ ++ +K ++K
Sbjct: 10 KELFEQGLAKFGRR-WTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQK 63
Score = 36.0 bits (83), Expect = 5e-05
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 56 WSREEDEKLLHLAKLMPTQWRTIAPII-GRTAAQCLERYEFLLYRARRKAVQ 106
W+ EE E +W I+ +I RT Q + +
Sbjct: 5 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLD 56
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum
majus) [TaxId: 4151]}
Length = 63
Score = 41.8 bits (98), Expect = 3e-07
Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 9 DEILKAAVMKYGK---NQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSR 58
++ + A+ Y K ++W+ +A + ++ ++ K + L IK E +
Sbjct: 9 NKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKYIESGK 60
Score = 38.0 bits (88), Expect = 1e-05
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 56 WSREEDEKLLHLAKL----MPTQWRTIAPII-GRTAAQCLERYEFLL 97
WS +E++ + P +W +A + GRT + + YE L+
Sbjct: 4 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 50
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 42.6 bits (100), Expect = 4e-07
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 28 ASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLM---PTQWRTIAPII-G 83
A L + S A + K W+RE D +L + + P + I+ +
Sbjct: 8 AGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN 67
Query: 84 RTAAQCLERYEFLL 97
+T + R+ L+
Sbjct: 68 KTPVEVSHRFRELM 81
Score = 28.3 bits (63), Expect = 0.076
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 9 DEILKAAVMKYGKNQ--WSRIASLLHRKSAKQCKARWFE 45
D ++ + G +S I+ L K+ + R+ E
Sbjct: 41 DRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRE 79
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 47
Score = 39.0 bits (91), Expect = 3e-06
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 53 KTEWSREEDEKLLHLAKLMPTQWRTIAPII-GRTAAQCLERYEFLL 97
KT W+ EED + K + +W IA ++ GRT + +
Sbjct: 1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 46
Score = 32.1 bits (73), Expect = 0.001
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWL 47
D I+ A + N+W+ IA LL ++ K W +
Sbjct: 9 DRIIYQAHKRL-GNRWAEIAKLLPGRTDNAIKNHWNSTM 46
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 83
Score = 39.3 bits (91), Expect = 5e-06
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 9 DEILKAAVMKYGKNQWSRIASL----LHRKSAKQCKARWFEWLDPSIKKTEWSREED--E 62
E L AV G +W + ++ K +W + + + R E +
Sbjct: 8 VEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQ 67
Query: 63 KLLHLAKLMPTQW 75
LL W
Sbjct: 68 DLLDRVLAAHAYW 80
Score = 28.5 bits (63), Expect = 0.057
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 56 WSREEDEKLLHL-AKLMPTQWRTIA-----PIIGRTAAQCLERYEFLLYRARRK 103
+S E E L+ L +WR + RT ++++ L++ A
Sbjct: 3 FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA 56
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 60
Score = 37.3 bits (86), Expect = 2e-05
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 49 PSIKKTEWSREEDEKLLHLAKL----MPTQWRTIAPII-GRTAAQCLERYEFL 96
+ W++ + + L + W IA + ++ C+ RY+ L
Sbjct: 8 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 60
Score = 31.9 bits (72), Expect = 0.002
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 9 DEILKAAVMKYGK---NQWSRIASLLHRKSAKQCKARW 43
++L+ A+ +Y + + W +IA + KS + C AR+
Sbjct: 20 QKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 68
Score = 37.6 bits (87), Expect = 2e-05
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEW 46
E + M++ KN + IAS L RK+ +C ++
Sbjct: 25 KETFREKFMQHPKN-FGLIASFLERKTVAECVLYYYLT 61
Score = 36.8 bits (85), Expect = 4e-05
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 52 KKTEWSREEDEKLLHLAKLMPTQWRTIAPII-GRTAAQCLERY 93
WS +E E P + IA + +T A+C+ Y
Sbjct: 16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 58
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L,
isoform b {Human (Homo sapiens) [TaxId: 9606]}
Length = 47
Score = 36.1 bits (83), Expect = 4e-05
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWF 44
+ L AVM G W +A+ + K+ ++C+ +
Sbjct: 9 EMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44
Score = 32.2 bits (73), Expect = 0.001
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 55 EWSREEDEKLLHL-AKLMPTQWRTIAPIIG-RTAAQCLERY 93
W+ +E+ LL W+ +A + +T +C + Y
Sbjct: 3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHY 43
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo
sapiens) [TaxId: 9606]}
Length = 65
Score = 35.6 bits (82), Expect = 8e-05
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 52 KKTEWSREEDEKLLHLAKLMPTQWRTIAPII-GRTAAQCLERYEFLLYRARRKAV 105
W+ EE + + ++ I+ +I ++ Q + R V
Sbjct: 4 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEV 58
Score = 33.3 bits (76), Expect = 7e-04
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 9 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEW---LDPSIKKTEWSRE 59
+ A+ KYG++ + I+ ++ KS Q K + + + EW E
Sbjct: 13 QLLAVQAIRKYGRD-FQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAE 65
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 55
Score = 35.3 bits (81), Expect = 9e-05
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 52 KKTEWSREEDEKLLHLA-KLMPTQWRTIA---PIIGRTAAQCLERYEFLL 97
KK +W+ EE E + K W I+ P + RTA +R+ +
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 50
Score = 35.3 bits (81), Expect = 1e-04
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 9 DEILKAAVMKYGKNQWSRIASL--LHRKSAKQCKARWFEWLDPSI 51
E +KA V KYG+ W+ I+ ++A K RW +
Sbjct: 10 SEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric
protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 34.1 bits (78), Expect = 2e-04
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 52 KKTEWSREEDEKLLHL-AKLMPTQWRTIA---PIIGRTAAQCLERY 93
K+ W EED+ L K W I RT+ +R+
Sbjct: 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 46
Score = 32.2 bits (73), Expect = 0.002
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 9 DEILKAAVMKYGKNQWSRIASL--LHRKSAKQCKARWFEWL 47
D+ L++ V KYG+ WS+I + +++ K RW
Sbjct: 10 DKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 32.5 bits (74), Expect = 0.001
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 54 TEWSREEDEKLLH-LAKL---MPTQWRTIAPIIGRTAAQCLERYEFL 96
EW+ E+ +L + K P +W IA +GR+ + + L
Sbjct: 2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQL 48
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 24.4 bits (53), Expect = 1.4
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 55 EWSREEDEKLLHLAKLMPTQWRTIAP--IIGRTAAQCLERY 93
EWS E + + I + ++ +E Y
Sbjct: 3 EWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY 43
>d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of
formiminotransferase-cyclodeaminase. {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 179
Score = 24.4 bits (53), Expect = 2.8
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 8 VDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEW 56
+ E L V YG+ A R+S +A +E L +K+ EW
Sbjct: 114 LAEELGVPVYLYGEA-----ARTAGRQSLPALRAGEYEALPEKLKQAEW 157
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531
{Helicobacter pylori [TaxId: 210]}
Length = 79
Score = 22.9 bits (49), Expect = 6.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 44 FEWLDPSIKKTEWSREEDEKLLHLAKL 70
FE + + E S+ E E LL LA L
Sbjct: 2 FEKIRKILADIEDSQNEIEMLLKLANL 28
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 102
Score = 22.9 bits (49), Expect = 8.1
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 12 LKAAVMKYG-------KNQWSRIASLLHRKSAKQCKARWFEWLDP 49
L V K+G QWS +A L +Q ++ +F L P
Sbjct: 39 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.132 0.413
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 429,120
Number of extensions: 17661
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 44
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)