BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15549
(621 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 56/250 (22%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASG-DDVGKEIWYLTERESGIANVEFASDLSRH 128
N + L+ H +V V FSP+G+ +AS DD ++W N + L+ H
Sbjct: 210 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--------RNGQLLQTLTGH 261
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+VN V F P+G+ +AS D+ T+ +W N N + + + L
Sbjct: 262 SSSVNGVAFRPDGQTIASASDDKTVKLW-------------------NRNGQ---LLQTL 299
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
GH V+ +++SP + S S D T +W+ G++L LT H V GVA+ P Q
Sbjct: 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQT 358
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+A+ S D++++ ++ + + + S S R + FS
Sbjct: 359 IASASDDKTVKLWNRNGQLLQTLTGHS------------------------SSVRGVAFS 394
Query: 309 PDGQLLIAPS 318
PDGQ + + S
Sbjct: 395 PDGQTIASAS 404
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 108/250 (43%), Gaps = 56/250 (22%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASG-DDVGKEIWYLTERESGIANVEFASDLSRH 128
N + L+ H +V V FSP+G+ +AS DD ++W N + L+ H
Sbjct: 46 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--------RNGQLLQTLTGH 97
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+V V FSP+G+ +AS D+ T+ +W N N + + + L
Sbjct: 98 SSSVRGVAFSPDGQTIASASDDKTVKLW-------------------NRNGQ---LLQTL 135
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
GH V+ +++SP + S S D T +W+ G+ L LT H V GVA+ P Q
Sbjct: 136 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT 194
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+A+ S D++++ ++ + + + S S R + FS
Sbjct: 195 IASASDDKTVKLWNRNGQLLQTLTGHS------------------------SSVRGVAFS 230
Query: 309 PDGQLLIAPS 318
PDGQ + + S
Sbjct: 231 PDGQTIASAS 240
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 56/250 (22%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASG-DDVGKEIWYLTERESGIANVEFASDLSRH 128
N + L+ H +V V FSP+G+ +AS DD ++W N + L+ H
Sbjct: 333 NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--------RNGQLLQTLTGH 384
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+V V FSP+G+ +AS D+ T+ +W N N + + + L
Sbjct: 385 SSSVRGVAFSPDGQTIASASDDKTVKLW-------------------NRNGQ---LLQTL 422
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
GH V+ +++SP + S S D T +W+ G+ L LT H V+GVA+ P Q
Sbjct: 423 TGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT 481
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+A+ S D++++ ++ + + + S S R + FS
Sbjct: 482 IASASDDKTVKLWNRNGQLLQTLTGHS------------------------SSVRGVAFS 517
Query: 309 PDGQLLIAPS 318
PDGQ + + S
Sbjct: 518 PDGQTIASAS 527
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 117/269 (43%), Gaps = 53/269 (19%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASG-DDVGKEIWYLTERESGIANVEFASDLSRH 128
N + L+ H +V V FSP+G+ +AS DD ++W N + L+ H
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--------RNGQLLQTLTGH 179
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+V V FSP+G+ +AS D+ T+ +W N N + + + L
Sbjct: 180 SSSVWGVAFSPDGQTIASASDDKTVKLW-------------------NRNGQ---LLQTL 217
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
GH V +++SP + S S D T +W+ G+ L LT H V GVA+ P Q
Sbjct: 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQT 276
Query: 249 VATLSSDRS----------LRTYSIQSKKVISRACR-SKLPVDSSHELFDKVVPLF---- 293
+A+ S D++ L+T + S V A + S+ + DK V L+
Sbjct: 277 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD--DKTVKLWNRNG 334
Query: 294 -HDDTM---KSFFRRLTFSPDGQLLIAPS 318
H T+ S + FSPDGQ + + S
Sbjct: 335 QHLQTLTGHSSSVWGVAFSPDGQTIASAS 363
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 97/226 (42%), Gaps = 57/226 (25%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASG-DDVGKEIW--------YLTERESGIANVE 120
N + L+ H +V V FSP+G+ +AS DD ++W LT S + V
Sbjct: 374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 433
Query: 121 FASD-------------------------LSRHQKAVNVVRFSPNGELLASGDDESTIIV 155
F+ D L+ H +V V FSP+G+ +AS D+ T+ +
Sbjct: 434 FSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 493
Query: 156 WKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNT 215
W N N + + + L GH V +++SP + S S D T
Sbjct: 494 W-------------------NRNGQ---LLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531
Query: 216 AIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTY 261
+W+ G+ L LT H V GVA+ P Q +A+ SSD++++ +
Sbjct: 532 VKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 40/211 (18%)
Query: 125 LSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIV 184
L H +V V FSP+G+ +AS D+ T+ +W N N + +
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLW-------------------NRNGQ---L 49
Query: 185 TKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDP 244
+ L GH V+ +++SP + S S D T +W+ G+ L LT H V+GVA+ P
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 108
Query: 245 KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRR 304
Q +A+ S D++++ ++ + + + S + + + DD + R
Sbjct: 109 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 168
Query: 305 -----------------LTFSPDGQLLIAPS 318
+ FSPDGQ + + S
Sbjct: 169 NGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 199
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 86
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 125
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV GK L L H V V ++
Sbjct: 126 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 185
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 186 IVSSSYDGLCRIWDTASGQCLKT--------------------LIDDDNPPVSFVK--FS 223
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 224 PNGKYILAAT 233
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 82
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 83 I-----SGHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 122
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 123 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 168
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 169 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 88
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 89 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 127
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV GK L L H V V ++
Sbjct: 128 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 187
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 188 IVSSSYDGLCRIWDTASGQCLKT--------------------LIDDDNPPVSFVK--FS 225
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 226 PNGKYILAAT 235
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 84
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 85 I-----SGHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 124
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 125 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 170
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 171 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 199
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 70
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 109
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV GK L L H V V ++
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKT--------------------LIDDDNPPVSFVK--FS 207
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 208 PNGKYILAAT 217
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 66
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 67 I-----SGHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 106
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 107 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 152
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 153 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 70
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 109
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV GK L L H V V ++
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKT--------------------LIDDDNPPVSFVK--FS 207
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 208 PNGKYILAAT 217
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 66
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 67 I-----SGHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 106
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 107 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 152
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 153 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 64
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 103
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV GK L L H V V ++
Sbjct: 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 163
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKT--------------------LIDDDNPPVSFVK--FS 201
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 202 PNGKYILAAT 211
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 60
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 61 IS-----GHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 100
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 101 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 146
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 64
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 103
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV GK L L H V V ++
Sbjct: 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 163
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKT--------------------LIDDDNPPVSFVK--FS 201
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 202 PNGKYILAAT 211
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 60
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 61 IS-----GHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 100
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 101 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 146
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 60
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 61 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 99
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV GK L L H V V ++
Sbjct: 100 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 159
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 160 IVSSSYDGLCRIWDTASGQCLKT--------------------LIDDDNPPVSFVK--FS 197
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 198 PNGKYILAAT 207
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 56
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 57 IS-----GHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 96
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 97 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 142
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 143 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 171
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 70
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 109
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV GK L L H V V ++
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKT--------------------LIDDDNPPVSFVK--FS 207
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 208 PNGKYILAAT 217
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 66
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 67 IS-----GHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 106
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 107 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 152
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 153 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 69
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 70 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 108
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV GK L L H V V ++
Sbjct: 109 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 168
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 169 IVSSSYDGLCRIWDTASGQCLKT--------------------LIDDDNPPVSFVK--FS 206
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 207 PNGKYILAAT 216
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 65
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 66 IS-----GHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 105
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 106 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 151
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 152 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 63
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 64 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 102
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV GK L L H V V ++
Sbjct: 103 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 162
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 163 IVSSSYDGLCRIWDTASGQCLKT--------------------LIDDDNPPVSFVK--FS 200
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 201 PNGKYILAAT 210
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 59
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 60 IS-----GHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 99
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 100 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 145
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 146 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 65
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 66 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 104
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV GK L L H V V ++
Sbjct: 105 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 164
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 165 IVSSSYDGLCRIWDTASGQCLKT--------------------LIDDDNPPVSFVK--FS 202
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 203 PNGKYILAAT 212
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 61
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 62 IS-----GHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 101
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 102 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 147
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 148 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 176
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 81
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 82 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 120
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV GK L L H V V ++
Sbjct: 121 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 180
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 181 IVSSSYDGLCRIWDTASGQCLKT--------------------LIDDDNPPVSFVK--FS 218
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 219 PNGKYILAAT 228
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 77
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 78 IS-----GHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 117
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 118 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 163
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 164 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 192
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 67
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 106
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV GK L L H V V ++
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLK--------------------TLIDDDNPPVSFVK--FS 204
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 205 PNGKYILAAT 214
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 63
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 64 IS-----GHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 103
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 104 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 149
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 67
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 106
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV GK L L H V V ++
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLK--------------------TLIDDDNPPVSFVK--FS 204
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 205 PNGKYILAAT 214
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 63
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 64 IS-----GHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 103
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 104 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 149
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLA-SGDDVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LA S D +IW G + +F +S H
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIW-------GAYDGKFEKTISGH 67
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 106
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV GK L L H V V ++
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLK--------------------TLIDDDNPPVSFVK--FS 204
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 205 PNGKYILAAT 214
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 80/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A S+D+ ++ + K F+K
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGK------------------FEKT 63
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 64 IS-----GHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 103
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 104 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP- 149
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 104/250 (41%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 67
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 106
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV G L L H V V ++
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKT--------------------LIDDDNPPVSFVK--FS 204
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 205 PNGKYILAAT 214
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 63
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 64 IS-----GHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 103
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 104 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP- 149
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 104/250 (41%), Gaps = 51/250 (20%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
N L+ H KAV+ V+FSPNGE LAS D +IW G + +F +S H
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGH 67
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ ++ V +S + LL S D+ T+ +W + + L K L
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL---------------------KTL 106
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
+GH V+ +++P S ++SGS D + +WDV G L L H V V ++
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308
+ + S D R + S + + L DD F + FS
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKT--------------------LIDDDNPPVSFVK--FS 204
Query: 309 PDGQLLIAPS 318
P+G+ ++A +
Sbjct: 205 PNGKYILAAT 214
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 230 LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289
L H K V V + P +++A+ S+D+ ++ + K F+K
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKT 63
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
+ K + +S D LL++ S D T K V+ CL
Sbjct: 64 IS-----GHKLGISDVAWSSDSNLLVSAS-----DDKTLKIWDVS----------SGKCL 103
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ +S V CC F ++++ + + ++ ++D + +
Sbjct: 104 KTLKGHSNYVFCCN-------------FNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP- 149
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
H ++ + ++ DG ++++SS DG C I
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 122/258 (47%), Gaps = 54/258 (20%)
Query: 80 HQKAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNV----- 134
H V V+FS +GE LA+G + +++ +++ S +A + S ++ + +N
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 135 -------VRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKI 187
V FSP+G+ LA+G ++ I +W D EN + I
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIW----------------DIENRK-----IVMI 160
Query: 188 LRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKN- 246
L+GH +D+Y + + P+ L+SGS D T +WD+ G+ + + V VA P +
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLTLSIEDGVTTVAVSPGDG 219
Query: 247 QYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLT 306
+Y+A S DR++R + ++ ++ R +DS +E H D++ S +
Sbjct: 220 KYIAAGSLDRAVRVWDSETGFLVER-------LDSENE-----SGTGHKDSVYS----VV 263
Query: 307 FSPDGQLLIAPSGCLENS 324
F+ DGQ ++ SG L+ S
Sbjct: 264 FTRDGQSVV--SGSLDRS 279
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 37/199 (18%)
Query: 81 QKAVNVVRFSP-NGELLASGD-DVGKEIW-----YLTER-----ESGIANVEFASDLSRH 128
+ V V SP +G+ +A+G D +W +L ER ESG H
Sbjct: 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG----------H 255
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ +V V F+ +G+ + SG + ++ +W + ++ D + N VT I
Sbjct: 256 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN-------ANNKSDSKTPNSGTCEVTYI- 307
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVA------W 242
GH + V ++ + +++SGS D + WD G L +L H+ V VA
Sbjct: 308 -GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366
Query: 243 DPKNQYVATLSSDRSLRTY 261
P+ AT S D R +
Sbjct: 367 GPEYNVFATGSGDCKARIW 385
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 26/185 (14%)
Query: 80 HQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFS 138
HQ+ V V +SP G LAS D IW + + E + L H+ V V ++
Sbjct: 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-----DFECVTTLEGHENEVKSVAWA 114
Query: 139 PNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDI 198
P+G LLA+ + ++ VW+ +DEE+ + +L H +DV +
Sbjct: 115 PSGNLLATCSRDKSVWVWE--------------VDEEDEYE----CVSVLNSHTQDVKHV 156
Query: 199 SWSPTSTHLISGSVDNTAIMWDVHKGKNL--GILTEHKKFVQGVAWDPKNQYVATLSSDR 256
W P+ L S S D+T ++ + + L H+ V +A+DP Q +A+ S DR
Sbjct: 157 VWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216
Query: 257 SLRTY 261
++R +
Sbjct: 217 TVRIW 221
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 27/179 (15%)
Query: 87 VRFSPNGELLAS-GDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLA 145
+ ++P G LLAS G D IW TE +S I + HQ+ V V +SP G LA
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWG-TEGDSWICKSVLSEG---HQRTVRKVAWSPCGNYLA 77
Query: 146 SGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTST 205
S ++T +WK+ D D E V L GH +V ++W+P+
Sbjct: 78 SASFDATTCIWKKNQD-----------DFECVT--------TLEGHENEVKSVAWAPSGN 118
Query: 206 HLISGSVDNTAIMWDVHKG---KNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTY 261
L + S D + +W+V + + + +L H + V+ V W P + +A+ S D +++ Y
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 40/211 (18%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
+ E + L H+ V V ++P+G LLA+ D +W + E + E S L+ H
Sbjct: 94 DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED----EYECVSVLNSH 149
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+ V V + P+ ELLAS + T+ +++++ D W+ L
Sbjct: 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDD-------------------WVCCATL 190
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAW---DPK 245
GH V+ +++ P+ L S S D T +W + N QGVA DP
Sbjct: 191 EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGN----------EQGVACSGSDPS 240
Query: 246 NQYVATLSSDRSLRTYSI---QSKKVISRAC 273
+ + TLS S Y I Q ++ AC
Sbjct: 241 WKCICTLSGFHSRTIYDIAWCQLTGALATAC 271
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 22/132 (16%)
Query: 135 VRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL-RGHLE 193
+ ++P G LLAS + I +W + D WI +L GH
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDS-------------------WICKSVLSEGHQR 62
Query: 194 DVYDISWSPTSTHLISGSVDNTAIMWDVHKG--KNLGILTEHKKFVQGVAWDPKNQYVAT 251
V ++WSP +L S S D T +W ++ + + L H+ V+ VAW P +AT
Sbjct: 63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLAT 122
Query: 252 LSSDRSLRTYSI 263
S D+S+ + +
Sbjct: 123 CSRDKSVWVWEV 134
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 29/232 (12%)
Query: 46 LLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASG--DDVG 103
LL R K+ +W + E + E S L+ H + V V + P+ ELLAS DD
Sbjct: 119 LLATCSRDKSVWVWEVDEED----EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV 174
Query: 104 KEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQD 163
K Y E + + + L H+ V + F P+G+ LAS D+ T+ +W+Q +
Sbjct: 175 KL--YREEEDDWVC----CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGN 228
Query: 164 LPEFPSSNLDEENVNKEHWIVTKILRG-HLEDVYDISWSPTSTHLISGSVDNTAIMWDVH 222
S D W L G H +YDI+W + L + D+ ++
Sbjct: 229 EQGVACSGSDPS------WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED 282
Query: 223 KGKN---------LGILTEHKKFVQGVAWDPKN-QYVATLSSDRSLRTYSIQ 264
+ + H + V VAW+PK +A+ S D + + Q
Sbjct: 283 PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 23/162 (14%)
Query: 77 LSRHQKAVNVVRFSPNGELLAS-GDDVGKEIW--YLTERESGIA------NVEFASDLSR 127
L H+ V + F P+G+ LAS DD IW YL E G+A + + LS
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 128 -HQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTK 186
H + + + + LA+ + I V+++ + D P+ P+ +L
Sbjct: 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSD-PQQPTFSL-----------TAH 297
Query: 187 ILRGHLEDVYDISWSPTSTHLISGSVDNTAI-MWDVHKGKNL 227
+ + H +DV ++W+P L++ D+ + W + + L
Sbjct: 298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 108/259 (41%), Gaps = 60/259 (23%)
Query: 55 TGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLAS-GDDVGKEIWYLTERE 113
T K+W + E+G +F L H +V + F +G+LLAS D+ ++W
Sbjct: 131 TIKVW---DYETG----DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW------ 177
Query: 114 SGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFP----- 168
E + H V+ V PNG+ + S + TI +W+ +T + F
Sbjct: 178 -DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236
Query: 169 -------------SSNLDEENVNKEHWIVTKI-----LRGHLEDVYDISWSPTSTH---- 206
+S +++ V W+V LR H V ISW+P S++
Sbjct: 237 VRMVRPNQDGTLIASCSNDQTVRV--WVVATKECKAELREHRHVVECISWAPESSYSSIS 294
Query: 207 ----------------LISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVA 250
L+SGS D T MWDV G L L H +V+GV + +++
Sbjct: 295 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL 354
Query: 251 TLSSDRSLRTYSIQSKKVI 269
+ + D++LR + ++K+ +
Sbjct: 355 SCADDKTLRVWDYKNKRCM 373
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 34/202 (16%)
Query: 77 LSRHQKAVNVVRFSPNGELLASG-DDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVV 135
LS H+ V V F P ++ S +D ++W + E+G +F L H +V +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVW---DYETG----DFERTLKGHTDSVQDI 156
Query: 136 RFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDV 195
F +G+LLAS + TI +W D F + + GH +V
Sbjct: 157 SFDHSGKLLASCSADMTIKLW------DFQGFE---------------CIRTMHGHDHNV 195
Query: 196 YDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSD 255
+S P H++S S D T MW+V G + T H+++V+ V + +A+ S+D
Sbjct: 196 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255
Query: 256 RSLRTYSIQSKKVISRACRSKL 277
+++R + + +K+ C+++L
Sbjct: 256 QTVRVWVVATKE-----CKAEL 272
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 87/231 (37%), Gaps = 56/231 (24%)
Query: 52 RLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLAS-GDDVGKEIWYLT 110
R KT K+W E ++G F H++ V +VR + +G L+AS +D +W
Sbjct: 212 RDKTIKMW---EVQTGYCVKTFTG----HREWVRMVRPNQDGTLIASCSNDQTVRVWV-- 262
Query: 111 ERESGIANVEFASDLSRHQKAVNVVRFSPN--------------------GELLASGDDE 150
+A E ++L H+ V + ++P G L SG +
Sbjct: 263 -----VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 317
Query: 151 STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISG 210
TI +W T L L GH V + + ++S
Sbjct: 318 KTIKMWDVSTGMCL---------------------MTLVGHDNWVRGVLFHSGGKFILSC 356
Query: 211 SVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTY 261
+ D T +WD + + L H+ FV + + YV T S D++++ +
Sbjct: 357 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 98/207 (47%), Gaps = 19/207 (9%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQ 129
N +F LS H V ++++ G L++ D +W + + G F S
Sbjct: 151 NKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW---DIKKGCCTHVFEGHNST-V 206
Query: 130 KAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPE------FP-SSNLDEENVNKEHW 182
+ +++V + N + + +G ++T+ VWK + +P+ +P + EEN
Sbjct: 207 RCLDIVEY-KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP----- 260
Query: 183 IVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAW 242
+LRGH+ V +S ++SGS DNT I+WDV + K L IL+ H + +
Sbjct: 261 YFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318
Query: 243 DPKNQYVATLSSDRSLRTYSIQSKKVI 269
D + + + S D ++R + +++ +++
Sbjct: 319 DHERKRCISASMDTTIRIWDLENGELM 345
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 118 NVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENV 177
N F L H +V V S +G ++ SG ++T+IVW D+ +
Sbjct: 259 NPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVW------DVAQMKC-------- 302
Query: 178 NKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFV 237
IL GH + +Y + IS S+D T +WD+ G+ + L H V
Sbjct: 303 -------LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355
Query: 238 QGVAWDPKNQYVATLSSDRSLRTY 261
+ K ++ + ++D S+R +
Sbjct: 356 GLLRLSDK--FLVSAAADGSIRGW 377
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 27/184 (14%)
Query: 80 HQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFS 138
H V + +P+ L SG D ++W + E G+ F H+ +N + F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---GMCRQTFTG----HESDINAICFF 235
Query: 139 PNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDI 198
PNG A+G D++T ++ + DQ+L + N+ + + +
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNI-------------------ICGITSV 276
Query: 199 SWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSL 258
S+S + L++G D +WD K G+L H V + VAT S D L
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 259 RTYS 262
+ ++
Sbjct: 337 KIWN 340
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 47/234 (20%)
Query: 84 VNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 142
V ++P+G +A G D I+ L RE NV + +L+ H ++ RF + +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTRE---GNVRVSRELAGHTGYLSCCRFLDDNQ 156
Query: 143 LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP 202
++ S D +T +W + E T GH DV +S +P
Sbjct: 157 IVTSSGD-TTCALW---------------------DIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 203 TSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYS 262
+ +SG+ D +A +WDV +G T H+ + + + P AT S D + R +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 263 IQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIA 316
+++ D+ + + D + ++FS G+LL+A
Sbjct: 255 LRA---------------------DQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 186 KILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPK 245
+ LRGHL +Y + W S L+S S D I+WD + + + +V A+ P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 246 NQYVATLSSDRSLRTYSIQSKK 267
YVA D Y++++++
Sbjct: 109 GNYVACGGLDNICSIYNLKTRE 130
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 27/184 (14%)
Query: 80 HQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFS 138
H V + +P+ L SG D ++W + E G+ F H+ +N + F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---GMCRQTFTG----HESDINAICFF 235
Query: 139 PNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDI 198
PNG A+G D++T ++ + DQ+L + N+ + + +
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNI-------------------ICGITSV 276
Query: 199 SWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSL 258
S+S + L++G D +WD K G+L H V + VAT S D L
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 259 RTYS 262
+ ++
Sbjct: 337 KIWN 340
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 47/234 (20%)
Query: 84 VNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 142
V ++P+G +A G D I+ L RE NV + +L+ H ++ RF + +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTRE---GNVRVSRELAGHTGYLSCCRFLDDNQ 156
Query: 143 LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP 202
++ S D +T +W + E T GH DV +S +P
Sbjct: 157 IVTSSGD-TTCALW---------------------DIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 203 TSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYS 262
+ +SG+ D +A +WDV +G T H+ + + + P AT S D + R +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 263 IQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIA 316
+++ D+ + + D + ++FS G+LL+A
Sbjct: 255 LRA---------------------DQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 186 KILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPK 245
+ LRGHL +Y + W S L+S S D I+WD + + + +V A+ P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 246 NQYVATLSSDRSLRTYSIQSKK 267
YVA D Y++++++
Sbjct: 109 GNYVACGGLDNICSIYNLKTRE 130
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 27/184 (14%)
Query: 80 HQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFS 138
H V + +P+ L SG D ++W + E G+ F H+ +N + F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---GMCRQTFTG----HESDINAICFF 235
Query: 139 PNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDI 198
PNG A+G D++T ++ + DQ+L + N+ + + +
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNI-------------------ICGITSV 276
Query: 199 SWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSL 258
S+S + L++G D +WD K G+L H V + VAT S D L
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 259 RTYS 262
+ ++
Sbjct: 337 KIWN 340
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 47/234 (20%)
Query: 84 VNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 142
V ++P+G +A G D I+ L RE NV + +L+ H ++ RF + +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTRE---GNVRVSRELAGHTGYLSCCRFLDDNQ 156
Query: 143 LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP 202
++ S D +T +W + E T GH DV +S +P
Sbjct: 157 IVTSSGD-TTCALW---------------------DIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 203 TSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYS 262
+ +SG+ D +A +WDV +G T H+ + + + P AT S D + R +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 263 IQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIA 316
+++ D+ + + D + ++FS G+LL+A
Sbjct: 255 LRA---------------------DQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 186 KILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPK 245
+ LRGHL +Y + W S L+S S D I+WD + + + +V A+ P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 246 NQYVATLSSDRSLRTYSIQSKK 267
YVA D Y++++++
Sbjct: 109 GNYVACGGLDNICSIYNLKTRE 130
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 27/184 (14%)
Query: 80 HQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFS 138
H V + +P+ L SG D ++W + E G+ F H+ +N + F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---GMCRQTFTG----HESDINAICFF 235
Query: 139 PNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDI 198
PNG A+G D++T ++ + DQ+L + N+ + + +
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNI-------------------ICGITSV 276
Query: 199 SWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSL 258
S+S + L++G D +WD K G+L H V + VAT S D L
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 259 RTYS 262
+ ++
Sbjct: 337 KIWN 340
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 47/234 (20%)
Query: 84 VNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 142
V ++P+G +A G D I+ L RE NV + +L+ H ++ RF + +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTRE---GNVRVSRELAGHTGYLSCCRFLDDNQ 156
Query: 143 LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP 202
++ S D +T +W + E T GH DV +S +P
Sbjct: 157 IVTSSGD-TTCALW---------------------DIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 203 TSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYS 262
+ +SG+ D +A +WDV +G T H+ + + + P AT S D + R +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 263 IQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIA 316
+++ D+ + + D + ++FS G+LL+A
Sbjct: 255 LRA---------------------DQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 186 KILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPK 245
+ LRGHL +Y + W S L+S S D I+WD + + + +V A+ P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 246 NQYVATLSSDRSLRTYSIQSKK 267
YVA D Y++++++
Sbjct: 109 GNYVACGGLDNICSIYNLKTRE 130
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 27/184 (14%)
Query: 80 HQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFS 138
H V + +P+ L SG D ++W + E G+ F H+ +N + F
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---GMCRQTFTG----HESDINAICFF 246
Query: 139 PNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDI 198
PNG A+G D++T ++ + DQ+L + N+ + + +
Sbjct: 247 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNI-------------------ICGITSV 287
Query: 199 SWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSL 258
S+S + L++G D +WD K G+L H V + VAT S D L
Sbjct: 288 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 347
Query: 259 RTYS 262
+ ++
Sbjct: 348 KIWN 351
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 47/234 (20%)
Query: 84 VNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 142
V ++P+G +A G D I+ L RE NV + +L+ H ++ RF + +
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTRE---GNVRVSRELAGHTGYLSCCRFLDDNQ 167
Query: 143 LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP 202
++ S D +T +W + E T GH DV +S +P
Sbjct: 168 IVTSSGD-TTCALW---------------------DIETGQQTTTFTGHTGDVMSLSLAP 205
Query: 203 TSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYS 262
+ +SG+ D +A +WDV +G T H+ + + + P AT S D + R +
Sbjct: 206 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 265
Query: 263 IQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIA 316
+++ D+ + + D + ++FS G+LL+A
Sbjct: 266 LRA---------------------DQELMTYSHDNIICGITSVSFSKSGRLLLA 298
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 186 KILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPK 245
+ LRGHL +Y + W S L+S S D I+WD + + + +V A+ P
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 246 NQYVATLSSDRSLRTYSIQSKK 267
YVA D Y++++++
Sbjct: 120 GNYVACGGLDNICSIYNLKTRE 141
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 120/331 (36%), Gaps = 65/331 (19%)
Query: 143 LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP 202
+L SG + T+++WK L EE N I K L GH V D++ S
Sbjct: 41 VLISGSRDKTVMIWK--------------LYEEEQNGYFGIPHKALTGHNHFVSDLALSQ 86
Query: 203 TSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYS 262
+ IS S D T +WD+ G H+ V VA+ P N+ + + ++R ++ ++
Sbjct: 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Query: 263 IQSKKVISRA----------CRSKLPVDSSHELFDKVVPLF----HDDTMK----SFFRR 304
I + S A C P+ S P F D +K +F R
Sbjct: 147 ILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIR 206
Query: 305 LTF----SPDGQLLIAPSGCLENSDSTRKPISVTHVF----------TRACLNKPAVCLP 350
TF S L I+P+G + K + + + + +N+ A P
Sbjct: 207 YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFN-P 265
Query: 351 SLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANI 410
LQ+ +V +F L P V + E + +P
Sbjct: 266 KLQWVAVGTDQGVKIFNLMTQSKAP--------VCTIEAEPITKAEGQKGKNP------- 310
Query: 411 HYTKLTDITWSSDGKVLIASSTDGYCSIISF 441
+ T + W++ GK L A TDG SF
Sbjct: 311 ---QCTSLAWNALGKKLFAGFTDGVIRTFSF 338
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 112/255 (43%), Gaps = 57/255 (22%)
Query: 20 DIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSR 79
D+ L QE NC+ I S +D KT ++W L +G F
Sbjct: 81 DLALSQE--NCFAI------SSSWD---------KTLRLWDL---RTGTTYKRFVG---- 116
Query: 80 HQKAVNVVRFSP-NGELLASGDDVGKEIWYLTERESGIANVEFAS-DLSRHQKAVNVVRF 137
HQ V V FSP N ++L++G + ++W + + +F+S + H V+ VR+
Sbjct: 117 HQSEVYSVAFSPDNRQILSAGAEREIKLWNI------LGECKFSSAEKENHSDWVSCVRY 170
Query: 138 SPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEE-NVNKEHWIVTKILRGHLEDVY 196
SP ++ S + K P F S D V ++ + + H +V
Sbjct: 171 SP---IMKSAN----------KVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVN 217
Query: 197 DISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQG-----VAWDPKNQYVAT 251
+S SP ++ +G D ++WD+ L + ++F G +A++PK Q+VA
Sbjct: 218 HLSISPNGKYIATGGKDKKLLIWDI-----LNLTYPQREFDAGSTINQIAFNPKLQWVA- 271
Query: 252 LSSDRSLRTYSIQSK 266
+ +D+ ++ +++ ++
Sbjct: 272 VGTDQGVKIFNLMTQ 286
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 96/206 (46%), Gaps = 19/206 (9%)
Query: 70 NVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQ 129
N +F LS H V ++++ G L++ D +W + + G F S
Sbjct: 151 NKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW---DIKKGCCTHVFEGHNST-V 206
Query: 130 KAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPE------FP-SSNLDEENVNKEHW 182
+ +++V + N + + +G ++T+ VWK + +P+ +P + EEN
Sbjct: 207 RCLDIVEY-KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP----- 260
Query: 183 IVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAW 242
+LRGH V +S ++SGS DNT I+WDV + K L IL+ H + +
Sbjct: 261 YFVGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIY 318
Query: 243 DPKNQYVATLSSDRSLRTYSIQSKKV 268
D + + + S D ++R + +++ ++
Sbjct: 319 DHERKRCISASXDTTIRIWDLENGEL 344
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 25/144 (17%)
Query: 118 NVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENV 177
N F L H +V V S +G ++ SG ++T+IVW + L
Sbjct: 259 NPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCL------------- 303
Query: 178 NKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFV 237
IL GH + +Y + IS S D T +WD+ G+ L H V
Sbjct: 304 --------YILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALV 355
Query: 238 QGVAWDPKNQYVATLSSDRSLRTY 261
+ K ++ + ++D S+R +
Sbjct: 356 GLLRLSDK--FLVSAAADGSIRGW 377
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 36/205 (17%)
Query: 68 IANVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEF------ 121
+A++ L +++ + FS +LA+G T+R+ + +V++
Sbjct: 1 MASINLIKSLKLYKEKIWSFDFSQG--ILATGS---------TDRKIKLVSVKYDDFTLI 49
Query: 122 -ASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKE 180
D + H+KA+ V + P+ LLA+G +ST+ +W ++ D + +D
Sbjct: 50 DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD----RTFEMD------- 98
Query: 181 HWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKG----KNLGILTEHKKF 236
+ I+ GH +V ++WS +L + S D + +W+ + + + +L EH +
Sbjct: 99 ---LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155
Query: 237 VQGVAWDPKNQYVATLSSDRSLRTY 261
V+ V W P +A+ S D ++R +
Sbjct: 156 VKHVIWHPSEALLASSSYDDTVRIW 180
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 85/218 (38%), Gaps = 33/218 (15%)
Query: 55 TGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGKEIWYLTERES 114
T IW E ++ + + H+ V V +S +G LA+ K +W ES
Sbjct: 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR-DKSVWIWETDES 139
Query: 115 GIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDE 174
G E S L H + V V + P+ LLAS + T+ +WK D
Sbjct: 140 G-EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD------------ 186
Query: 175 ENVNKEHWIVTKILRGHLEDVYDISWSPTST--HLISGSVDNTAIMW--------DVHKG 224
W +L GH V+ + T L SGS D+T +W D +
Sbjct: 187 -------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239
Query: 225 KNLGILTE-HKKFVQGVAWDPKNQYVATLSSDRSLRTY 261
IL + HK+ V VAW N +A++ +D L Y
Sbjct: 240 VCEAILPDVHKRQVYNVAW-GFNGLIASVGADGVLAVY 276
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 97/259 (37%), Gaps = 59/259 (22%)
Query: 72 EFASDLSRHQKAVNVVRF--SPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH 128
E H + VN F S + LLA+G D ++W L ++E N F H
Sbjct: 696 ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKEC--RNTMFG-----H 748
Query: 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
+VN RFSP+ +LLAS + T+ +W D + N+ I K
Sbjct: 749 TNSVNHCRFSPDDKLLASCSADGTLKLW----------------DATSANERKSINVKQF 792
Query: 189 RGHLED--------VYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLG-ILTEHKKFVQG 239
+LED V SWS ++ + N ++D+H LG I T H +Q
Sbjct: 793 FLNLEDPQEDMEVIVKCCSWSADGARIMVAA-KNKIFLFDIHTSGLLGEIHTGHHSTIQY 851
Query: 240 VAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMK 299
+ P+N S + ++ S+ ++ CR L
Sbjct: 852 CDFSPQNHLAVVALSQYCVELWNTDSRSKVAD-CRGHL---------------------- 888
Query: 300 SFFRRLTFSPDGQLLIAPS 318
S+ + FSPDG + S
Sbjct: 889 SWVHGVMFSPDGSSFLTSS 907
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 109/295 (36%), Gaps = 78/295 (26%)
Query: 54 KTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGKEIWYLTERE 113
+TG+I YLTE + V+ SP+ + +A GD+ G E
Sbjct: 958 RTGQIDYLTEAQ------------------VSCCCLSPHLQYIAFGDENGA-----IEIL 994
Query: 114 SGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLD 173
+ N F S +H+K V ++F+ + + L S D++ I VW + D+ +
Sbjct: 995 ELVNNRIFQSRF-QHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI--------- 1044
Query: 174 EENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEH 233
LRGH E V D S L+S S D T +W++ G H
Sbjct: 1045 -------------FLRGHQETVKDFRLLKNS-RLLSWSFDGTVKVWNIITGNKEKDFVCH 1090
Query: 234 KKFVQGVAWDPKNQYVATLSSDRSLRTYS---------IQSKKVISRACRSKLPVDSS-- 282
+ V ++ S+D++ + +S ++ R S VDS+
Sbjct: 1091 QGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRC--SAFSVDSTLL 1148
Query: 283 ----------------HELFDKVVPLFHDD--TMKSFFRRLTFSPDGQLLIAPSG 319
EL PL + T + L FSPDG++LI+ G
Sbjct: 1149 ATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGG 1203
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 122/311 (39%), Gaps = 52/311 (16%)
Query: 155 VWKQKTDQDLPEFPSSNLDEENVNKEHW--IVTKILRGHLEDVYDISWSPTSTHLISGSV 212
V++Q Q E + L E +NK++ + ++R H + VY +S + S
Sbjct: 582 VYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGA 641
Query: 213 DNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLR-----------TY 261
D T ++ G+ L + H+ V A+ ++++AT S D+ ++ TY
Sbjct: 642 DKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTY 701
Query: 262 SIQSKKV----ISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFF------RRLTFSPDG 311
S++V + + L S + F K+ L + + F FSPD
Sbjct: 702 DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD 761
Query: 312 QLLIAPS--GCLENSDST----RKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVL 365
+LL + S G L+ D+T RK I+V F L P + V VKCC
Sbjct: 762 KLLASCSADGTLKLWDATSANERKSINVKQFFLN--LEDPQ------EDMEVIVKCCS-- 811
Query: 366 FELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGK 425
S D I VA +N I L+D + I H++ + +S
Sbjct: 812 ----WSADGAR--------IMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNH 859
Query: 426 VLIASSTDGYC 436
+ + + + YC
Sbjct: 860 LAVVALSQ-YC 869
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 80 HQKAVNVVRFSPNGEL-LASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFS 138
H + FSP L + + E+W T+ S +A D H V+ V FS
Sbjct: 845 HHSTIQYCDFSPQNHLAVVALSQYCVELWN-TDSRSKVA------DCRGHLSWVHGVMFS 897
Query: 139 PNGELLASGDDESTIIVWKQK 159
P+G + D+ TI +W+ K
Sbjct: 898 PDGSSFLTSSDDQTIRLWETK 918
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 39/197 (19%)
Query: 57 KIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGK-EIWYLT---ER 112
K+W L ++E N F H +VN RFSP+ +LLAS G ++W T ER
Sbjct: 732 KLWDLNQKEC--RNTMFG-----HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANER 784
Query: 113 ESGIANVEFASDLSRHQKAVNVV----RFSPNGELLASGDDESTIIVWKQKTDQDLPEF- 167
+S I +F +L Q+ + V+ +S +G + ++ I ++ T L E
Sbjct: 785 KS-INVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAA-KNKIFLFDIHTSGLLGEIH 842
Query: 168 -------------PSSNLDEENVNK---EHWIV---TKI--LRGHLEDVYDISWSPTSTH 206
P ++L +++ E W +K+ RGHL V+ + +SP +
Sbjct: 843 TGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSS 902
Query: 207 LISGSVDNTAIMWDVHK 223
++ S D T +W+ K
Sbjct: 903 FLTSSDDQTIRLWETKK 919
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 90/216 (41%), Gaps = 33/216 (15%)
Query: 30 CYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRF 89
C RI+TG S + L+ R+ T R + E + L H +AV +RF
Sbjct: 165 CKRILTGHTGSVL---CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 221
Query: 90 SPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDD 149
+ NG ++ D +W + + ++ L H+ AVNVV F + ASGD
Sbjct: 222 N-NGMMVTCSKDRSIAVWDM----ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD- 275
Query: 150 ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLIS 209
TI VW T EF + L GH + + + ++S
Sbjct: 276 -RTIKVWNTST----CEF-----------------VRTLNGHKRGIACLQYR--DRLVVS 311
Query: 210 GSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPK 245
GS DNT +WD+ G L +L H++ V+ + +D K
Sbjct: 312 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK 347
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 207 LISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSK 266
++SG DNT +WD + + ILT H V + +D + + T SSD ++R + + +
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWDVNTG 203
Query: 267 KVIS 270
++++
Sbjct: 204 EMLN 207
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 103/247 (41%), Gaps = 51/247 (20%)
Query: 80 HQKAVNVVRFS--PNGELLASG-DDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVR 136
H + VN F+ N LLA+G +D ++W L ++E N F H +VN R
Sbjct: 705 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNTMFG-----HTNSVNHCR 757
Query: 137 FSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVY 196
FSP+ ELLAS + T+ +W + S+N + +++N + + ++ EDV
Sbjct: 758 FSPDDELLASCSADGTLRLW---------DVRSAN-ERKSINVKRFFLSS--EDPPEDVE 805
Query: 197 DI----SWSPTSTHLISGSVDNTAIMWDVHKGKNLG-ILTEHKKFVQGVAWDPKNQYVAT 251
I SWS +I + N +++D+H L I T H +Q + P +
Sbjct: 806 VIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 864
Query: 252 LSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDG 311
S + ++I S+ ++ CR L S+ + FSPDG
Sbjct: 865 ALSQYCVELWNIDSRLKVAD-CRGHL----------------------SWVHGVMFSPDG 901
Query: 312 QLLIAPS 318
+ S
Sbjct: 902 SSFLTAS 908
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 120/309 (38%), Gaps = 48/309 (15%)
Query: 155 VWKQKTDQDLPEFPSSNLDEENVNKEHW--IVTKILRGHLEDVYDISWSPTSTHLISGSV 212
V++Q Q E + L E +NK+ + ++R H + VY +S + S
Sbjct: 583 VYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGA 642
Query: 213 DNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLR-----------TY 261
D T ++ G+ L + H+ V A+ + Y+AT S+D+ ++ TY
Sbjct: 643 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 702
Query: 262 SIQSKKV----ISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFF------RRLTFSPDG 311
S++V + L S++ F K+ L + + F FSPD
Sbjct: 703 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD 762
Query: 312 QLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSL---QYYSVAVKCCPVLFEL 368
+LL + S +D T + V R +N L S + V VKCC
Sbjct: 763 ELLASCS-----ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS----W 813
Query: 369 KPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWS-SDGKVL 427
DK I VA +N +LL+D + A I H++ + +S D +
Sbjct: 814 SADGDK----------IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV 863
Query: 428 IASSTDGYC 436
IA S YC
Sbjct: 864 IALSQ--YC 870
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 98/262 (37%), Gaps = 72/262 (27%)
Query: 54 KTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGK-EIWYLTER 112
KTG+I YL E + V+ SP+ E +A GD+ G +I L
Sbjct: 959 KTGQIDYLPEAQ------------------VSCCCLSPHLEYVAFGDEDGAIKIIELPN- 999
Query: 113 ESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNL 172
N F+S + H+KAV ++F+ +G+ L S ++S I VW +T +
Sbjct: 1000 -----NRVFSSGVG-HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-------- 1045
Query: 173 DEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTE 232
L+ H E V D S L+S S D T +W+V G+ T
Sbjct: 1046 --------------FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTC 1090
Query: 233 HKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPL 292
H+ V A ++ S+D++ + +S FD + PL
Sbjct: 1091 HQGTVLSCAISSDATKFSSTSADKTAKIWS-----------------------FDLLSPL 1127
Query: 293 FHDDTMKSFFRRLTFSPDGQLL 314
R FS DG LL
Sbjct: 1128 HELKGHNGCVRCSAFSLDGILL 1149
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 124 DLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWI 183
+L H V FS +G LLA+GDD I +W Q L +++E W+
Sbjct: 1129 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1188
Query: 184 VTKILRGHLEDVYDISWSPTSTHLISG 210
D+ +SP S L+S
Sbjct: 1189 T------------DVCFSPDSKTLVSA 1203
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 54 KTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGK-EIWYLTER 112
KT KIW + +L H V FS +G LLA+GDD G+ IW +++
Sbjct: 1114 KTAKIW-------SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1166
Query: 113 E--SGIANVEFASDLSRHQKAVNVVRFSPNGELLASG 147
+ A + + H V V FSP+ + L S
Sbjct: 1167 QLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1203
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 80 HQKAVNVVRFSPNGEL-LASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFS 138
H + FSP L + + E+W + R +D H V+ V FS
Sbjct: 846 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK-------VADCRGHLSWVHGVMFS 898
Query: 139 PNGELLASGDDESTIIVWKQK 159
P+G + D+ TI VW+ K
Sbjct: 899 PDGSSFLTASDDQTIRVWETK 919
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 78/211 (36%), Gaps = 67/211 (31%)
Query: 57 KIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGK-EIWYLTERESG 115
K+W L ++E N F H +VN RFSP+ ELLAS G +W
Sbjct: 733 KLWDLNQKEC--RNTMFG-----HTNSVNHCRFSPDDELLASCSADGTLRLW-------- 777
Query: 116 IANVEFASDLSRHQKAVNVVRFSPNGE------------LLASGDDESTIIVWKQKTDQD 163
+V A++ +K++NV RF + E S D + I+ K K
Sbjct: 778 --DVRSANE----RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-- 829
Query: 164 LPEFPSSNLDEENVNKEH--------------------------WIVTKIL-----RGHL 192
L + +S L E H W + L RGHL
Sbjct: 830 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL 889
Query: 193 EDVYDISWSPTSTHLISGSVDNTAIMWDVHK 223
V+ + +SP + ++ S D T +W+ K
Sbjct: 890 SWVHGVMFSPDGSSFLTASDDQTIRVWETKK 920
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 103/247 (41%), Gaps = 51/247 (20%)
Query: 80 HQKAVNVVRFS--PNGELLASG-DDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVR 136
H + VN F+ N LLA+G +D ++W L ++E N F H +VN R
Sbjct: 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNTMFG-----HTNSVNHCR 750
Query: 137 FSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVY 196
FSP+ ELLAS + T+ +W + S+N + +++N + + ++ EDV
Sbjct: 751 FSPDDELLASCSADGTLRLW---------DVRSAN-ERKSINVKRFFLSS--EDPPEDVE 798
Query: 197 DI----SWSPTSTHLISGSVDNTAIMWDVHKGKNLG-ILTEHKKFVQGVAWDPKNQYVAT 251
I SWS +I + N +++D+H L I T H +Q + P +
Sbjct: 799 VIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857
Query: 252 LSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDG 311
S + ++I S+ ++ CR L S+ + FSPDG
Sbjct: 858 ALSQYCVELWNIDSRLKVAD-CRGHL----------------------SWVHGVMFSPDG 894
Query: 312 QLLIAPS 318
+ S
Sbjct: 895 SSFLTAS 901
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 120/309 (38%), Gaps = 48/309 (15%)
Query: 155 VWKQKTDQDLPEFPSSNLDEENVNKEHW--IVTKILRGHLEDVYDISWSPTSTHLISGSV 212
V++Q Q E + L E +NK+ + ++R H + VY +S + S
Sbjct: 576 VYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGA 635
Query: 213 DNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLR-----------TY 261
D T ++ G+ L + H+ V A+ + Y+AT S+D+ ++ TY
Sbjct: 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 695
Query: 262 SIQSKKV----ISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFF------RRLTFSPDG 311
S++V + L S++ F K+ L + + F FSPD
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 312 QLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSL---QYYSVAVKCCPVLFEL 368
+LL + S +D T + V R +N L S + V VKCC
Sbjct: 756 ELLASCS-----ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS----W 806
Query: 369 KPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWS-SDGKVL 427
DK I VA +N +LL+D + A I H++ + +S D +
Sbjct: 807 SADGDK----------IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV 856
Query: 428 IASSTDGYC 436
IA S YC
Sbjct: 857 IALSQ--YC 863
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 98/262 (37%), Gaps = 72/262 (27%)
Query: 54 KTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGK-EIWYLTER 112
KTG+I YL E + V+ SP+ E +A GD+ G +I L
Sbjct: 952 KTGQIDYLPEAQ------------------VSCCCLSPHLEYVAFGDEDGAIKIIELPN- 992
Query: 113 ESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNL 172
N F+S + H+KAV ++F+ +G+ L S ++S I VW +T +
Sbjct: 993 -----NRVFSSGVG-HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-------- 1038
Query: 173 DEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTE 232
L+ H E V D S L+S S D T +W+V G+ T
Sbjct: 1039 --------------FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTC 1083
Query: 233 HKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPL 292
H+ V A ++ S+D++ + +S FD + PL
Sbjct: 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWS-----------------------FDLLSPL 1120
Query: 293 FHDDTMKSFFRRLTFSPDGQLL 314
R FS DG LL
Sbjct: 1121 HELKGHNGCVRCSAFSLDGILL 1142
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 124 DLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWI 183
+L H V FS +G LLA+GDD I +W Q L +++E W+
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1181
Query: 184 VTKILRGHLEDVYDISWSPTSTHLISG 210
D+ +SP S L+S
Sbjct: 1182 T------------DVCFSPDSKTLVSA 1196
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 54 KTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGK-EIWYLTER 112
KT KIW + +L H V FS +G LLA+GDD G+ IW +++
Sbjct: 1107 KTAKIW-------SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159
Query: 113 E--SGIANVEFASDLSRHQKAVNVVRFSPNGELLASG 147
+ A + + H V V FSP+ + L S
Sbjct: 1160 QLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 80 HQKAVNVVRFSPNGEL-LASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFS 138
H + FSP L + + E+W + R +D H V+ V FS
Sbjct: 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK-------VADCRGHLSWVHGVMFS 891
Query: 139 PNGELLASGDDESTIIVWKQK 159
P+G + D+ TI VW+ K
Sbjct: 892 PDGSSFLTASDDQTIRVWETK 912
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 78/211 (36%), Gaps = 67/211 (31%)
Query: 57 KIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGK-EIWYLTERESG 115
K+W L ++E N F H +VN RFSP+ ELLAS G +W
Sbjct: 726 KLWDLNQKEC--RNTMFG-----HTNSVNHCRFSPDDELLASCSADGTLRLW-------- 770
Query: 116 IANVEFASDLSRHQKAVNVVRFSPNGE------------LLASGDDESTIIVWKQKTDQD 163
+V A++ +K++NV RF + E S D + I+ K K
Sbjct: 771 --DVRSANE----RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-- 822
Query: 164 LPEFPSSNLDEENVNKEH--------------------------WIVTKIL-----RGHL 192
L + +S L E H W + L RGHL
Sbjct: 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL 882
Query: 193 EDVYDISWSPTSTHLISGSVDNTAIMWDVHK 223
V+ + +SP + ++ S D T +W+ K
Sbjct: 883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 180 EHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKN----LGILTEHKK 235
EH + T L GH ++V + W+P HL SG DN +W G+ L T+H+
Sbjct: 231 EHHVAT--LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 288
Query: 236 FVQGVAWDPKNQYVATL---SSDRSLRTYSIQSKKVIS 270
V+ VAW P V +SDR +R +++ S +S
Sbjct: 289 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 326
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 26/165 (15%)
Query: 83 AVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 142
+ V S N +L+SG G ++ + +A A+ LS H + V +R++P+G
Sbjct: 200 SARVGSLSWNSYILSSGSRSG----HIHHHDVRVAEHHVAT-LSGHSQEVCGLRWAPDGR 254
Query: 143 LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP 202
LASG +++ + VW P P + W+ + H V ++W P
Sbjct: 255 HLASGGNDNLVNVW--------PSAP---------GEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 203 TSTHLIS---GSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDP 244
+++++ G+ D +W+V G L + H + V + W P
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSP 341
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 158 QKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAI 217
+KT + +P P LD + ++++ + WS S ++++ ++DN+
Sbjct: 94 RKTCRYIPSLPDRILDAPEIRNDYYLNL------------VDWS--SGNVLAVALDNSVY 139
Query: 218 MWDVHKGKNLGILTEHK--KFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKK 267
+W G L +L + +++ VAW + Y+A +S ++ + +Q +K
Sbjct: 140 LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 191
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 29/171 (16%)
Query: 75 SDLSRHQKAVNVVRFSPNGELLASG-DDVGKEIWYLTERESGIANVEFASDLSRHQKAVN 133
+ LS H + V +R++P+G LASG +D +W E G ++ ++HQ AV
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ---TFTQHQGAVK 291
Query: 134 VVRFSP-NGELLASGDDES--TIIVWKQKTDQDLPEFPSSN--------------LDEEN 176
V + P +LA+G S I +W + L + + +
Sbjct: 292 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG 351
Query: 177 VNKEHWIVTKI--------LRGHLEDVYDISWSPTSTHLISGSVDNTAIMW 219
+ ++ K L+GH V ++ SP + S + D T +W
Sbjct: 352 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 193 EDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATL 252
E + ++W +L G+ +WDV + K L +T H V ++W N Y+ +
Sbjct: 159 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSS 215
Query: 253 SS 254
S
Sbjct: 216 GS 217
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 180 EHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKN----LGILTEHKK 235
EH + T L GH ++V + W+P HL SG DN +W G+ L T+H+
Sbjct: 220 EHHVAT--LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277
Query: 236 FVQGVAWDPKNQYVATL---SSDRSLRTYSIQSKKVIS 270
V+ VAW P V +SDR +R +++ S +S
Sbjct: 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 26/165 (15%)
Query: 83 AVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 142
+ V S N +L+SG G ++ + +A A+ LS H + V +R++P+G
Sbjct: 189 SARVGSLSWNSYILSSGSRSG----HIHHHDVRVAEHHVAT-LSGHSQEVCGLRWAPDGR 243
Query: 143 LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP 202
LASG +++ + VW P P + W+ + H V ++W P
Sbjct: 244 HLASGGNDNLVNVW--------PSAP---------GEGGWVPLQTFTQHQGAVKAVAWCP 286
Query: 203 TSTHLIS---GSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDP 244
+++++ G+ D +W+V G L + H + V + W P
Sbjct: 287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSP 330
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 158 QKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAI 217
+KT + +P P LD + ++++ + WS S ++++ ++DN+
Sbjct: 83 RKTCRYIPSLPDRILDAPEIRNDYYLNL------------VDWS--SGNVLAVALDNSVY 128
Query: 218 MWDVHKGKNLGILTEHK--KFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKK 267
+W G L +L + +++ VAW + Y+A +S ++ + +Q +K
Sbjct: 129 LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 29/171 (16%)
Query: 75 SDLSRHQKAVNVVRFSPNGELLASG-DDVGKEIWYLTERESGIANVEFASDLSRHQKAVN 133
+ LS H + V +R++P+G LASG +D +W E G ++ ++HQ AV
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ---TFTQHQGAVK 280
Query: 134 VVRFSP-NGELLASGDDES--TIIVWKQKTDQDLPEFPSSN--------------LDEEN 176
V + P +LA+G S I +W + L + + +
Sbjct: 281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG 340
Query: 177 VNKEHWIVTKI--------LRGHLEDVYDISWSPTSTHLISGSVDNTAIMW 219
+ ++ K L+GH V ++ SP + S + D T +W
Sbjct: 341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 193 EDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATL 252
E + ++W +L G+ +WDV + K L +T H V ++W N Y+ +
Sbjct: 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILS- 203
Query: 253 SSDRS 257
S RS
Sbjct: 204 SGSRS 208
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 41/240 (17%)
Query: 97 ASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNG-ELLASGDDESTIIV 155
+SG D+G E Y + + L H V + +P +++ S + TII+
Sbjct: 8 SSGVDLGTENLYFQSMMT--EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIM 65
Query: 156 WKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNT 215
WK D+ P + LRGH V D+ S +SGS D T
Sbjct: 66 WKLTRDETNYGIPQ----------------RALRGHSHFVSDVVISSDGQFALSGSWDGT 109
Query: 216 AIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRT--------YSIQSKK 267
+WD+ G H K V VA+ N+ + + S D++++ Y++Q +
Sbjct: 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES 169
Query: 268 VISRACRSKLPVDSSHEL-----FDKVVPLFHDDTMK---------SFFRRLTFSPDGQL 313
+ +SS+ + +DK+V +++ K + +T SPDG L
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 229
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 91/218 (41%), Gaps = 39/218 (17%)
Query: 55 TGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERE 113
T ++W LT +G F H K V V FS + + SG D ++W
Sbjct: 109 TLRLWDLT---TGTTTRRFVG----HTKDVLSVAFSSDNRQIVSGSRDKTIKLW------ 155
Query: 114 SGIANVEFASDLSRHQKAVNVVRFSPNGE--LLASGDDESTIIVWKQKTDQDLPEFPSSN 171
+ + ++ H + V+ VRFSPN ++ S + + VW N
Sbjct: 156 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW--------------N 201
Query: 172 LDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILT 231
L + H GH + ++ SP + SG D A++WD+++GK+L L
Sbjct: 202 LANCKLKTNH-------IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL- 253
Query: 232 EHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVI 269
+ + + + P N+Y ++ S++ + ++ K ++
Sbjct: 254 DGGDIINALCFSP-NRYWLCAATGPSIKIWDLEGKIIV 290
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 38/176 (21%)
Query: 80 HQKAVNVVRFSPNGE---LLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVR 136
H + V+ VRFSPN +++ G D ++W L AN + ++ H +N V
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL-------ANCKLKTNHIGHTGYLNTVT 222
Query: 137 FSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVN--KEHWIVT--------- 185
SP+G L ASG + ++W + L ++ +W+
Sbjct: 223 VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIW 282
Query: 186 ----KILRGHLED-------------VYDISWSPTSTHLISGSVDNTAIMWDVHKG 224
KI+ L+ ++WS L +G DN +W V G
Sbjct: 283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 19/135 (14%)
Query: 128 HQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKI 187
H+ VN VR+ P+G+ ASG D++T ++ + D+++ + +KE I
Sbjct: 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY----------SKE-----SI 283
Query: 188 LRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQ 247
+ G + +S + L +G D T +WDV KG + IL H+ V + P
Sbjct: 284 IFG----ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGT 339
Query: 248 YVATLSSDRSLRTYS 262
+ S D +LR ++
Sbjct: 340 AFCSGSWDHTLRVWA 354
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 143 LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP 202
L ASGD T +W ++ Q L F GH DV + +P
Sbjct: 170 LTASGD--GTCALWDVESGQLLQSF---------------------HGHGADVLCLDLAP 206
Query: 203 TSTH--LISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRT 260
+ T +SG D A++WD+ G+ + H+ V V + P A+ S D + R
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 261 YSIQSKKVIS 270
Y +++ + ++
Sbjct: 267 YDLRADREVA 276
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 35/145 (24%)
Query: 80 HQKAVNVVRFSPNGELLASG-DDVGKEIWYL-TERESGIANVE---FASDLSRHQKAVNV 134
H+ VN VR+ P+G+ ASG DD ++ L +RE I + E F + +
Sbjct: 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA---------SS 289
Query: 135 VRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLED 194
V FS +G LL +G ++ TI VW L V+ IL GH
Sbjct: 290 VDFSLSGRLLFAGYNDYTINVWDV-------------LKGSRVS--------ILFGHENR 328
Query: 195 VYDISWSPTSTHLISGSVDNTAIMW 219
V + SP T SGS D+T +W
Sbjct: 329 VSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 34/91 (37%)
Query: 186 KILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPK 245
+ L+GH V + W ++S S D I+WD +T +V A+ P
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 246 NQYVATLSSDRSLRTYSIQSKKVISRACRSK 276
+A D Y + K + A + K
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKK 148
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 180 EHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKN----LGILTEHKK 235
EH + T L GH ++V + W+P HL SG DN +W G+ L T+H+
Sbjct: 140 EHHVAT--LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197
Query: 236 FVQGVAWDPKNQYVATL---SSDRSLRTYSIQSKKVIS 270
V+ VAW P V +SDR +R +++ S +S
Sbjct: 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 235
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 31/191 (16%)
Query: 77 LSRHQKAVNVVRFSPNGELLAS-GDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVV 135
LS H + V +R++P+G LAS G+D +W E G ++ ++HQ AV V
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ---TFTQHQGAVKAV 202
Query: 136 RFSP-NGELLASGDDES--TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHL 192
+ P +LA+G S I +W + L S +D +
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----SAVDAHS---------------- 241
Query: 193 EDVYDISWSPTSTHLISGS--VDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVA 250
V I WSP LISG N ++W + L H V + P VA
Sbjct: 242 -QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300
Query: 251 TLSSDRSLRTY 261
+ ++D +LR +
Sbjct: 301 SAAADETLRLW 311
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 26/162 (16%)
Query: 86 VVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLA 145
V S N +L+SG G ++ + +A A+ LS H + V +R++P+G LA
Sbjct: 112 VGSLSWNSYILSSGSRSG----HIHHHDVRVAEHHVAT-LSGHSQEVCGLRWAPDGRHLA 166
Query: 146 SGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTST 205
SG +++ + VW P P + W+ + H V ++W P +
Sbjct: 167 SGGNDNLVNVW--------PSAP---------GEGGWVPLQTFTQHQGAVKAVAWCPWQS 209
Query: 206 HLIS---GSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDP 244
++++ G+ D +W+V G L + H + V + W P
Sbjct: 210 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSP 250
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 158 QKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAI 217
+KT + +P P LD + ++++ + WS S ++++ ++DN+
Sbjct: 3 RKTCRYIPSLPDRILDAPEIRNDYYLNL------------VDWS--SGNVLAVALDNSVY 48
Query: 218 MWDVHKGKNLGILTEHK--KFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKK 267
+W G L +L + +++ VAW + Y+A +S ++ + +Q +K
Sbjct: 49 LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 100
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 31/152 (20%)
Query: 76 DLSRHQKAVNVVRFSPNGEL-LASGDDVGKEIWYLTERESGIANVE-----FASDLSRHQ 129
+L+ +A+N V F P+ + SG D ++ +A E F S H
Sbjct: 142 NLTGQARAMNSVDFKPSRPFRIISGSD-----------DNTVAIFEGPPFKFKSTFGEHT 190
Query: 130 KAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILR 189
K V+ VR++P+G L AS + TI+++ F +L +NV
Sbjct: 191 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL--KNV------------ 236
Query: 190 GHLEDVYDISWSPTSTHLISGSVDNTAIMWDV 221
H V+ ++WSP T + S S D T +W+V
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 88/400 (22%), Positives = 157/400 (39%), Gaps = 61/400 (15%)
Query: 72 EFASDLSRHQKAVNVVRFSPNGELLASGDDVGKEIWY--LTERESGIANVEFASDLSRHQ 129
+F S H K V+ VR++P+G L AS G + Y + ++G+ + +++ H
Sbjct: 181 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA-HS 239
Query: 130 KAVNVVRFSPNGELLASGDDESTIIVWKQKT--------------DQDLPEF-------- 167
+V + +SP+G +AS + TI +W T DQ L
Sbjct: 240 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 299
Query: 168 PSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNL 227
S+N VN E + ++ GH + + +S S L S + WD+ G +
Sbjct: 300 ISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359
Query: 228 GILTE-HKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKV-ISRACRSKLPVDSSHEL 285
+ + H + G+ K + T+S D L+ V S+A +KL S +
Sbjct: 360 RVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKL----SSQP 414
Query: 286 FDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAP----SGCLENSDSTRKPISV------TH 335
V D + + ++ + G+L P S C+ S+ ++ ++V H
Sbjct: 415 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND-KQFVAVGGQDSKVH 473
Query: 336 VF--TRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNI 393
V+ + A +++ + + SVA L +D R VI + NN
Sbjct: 474 VYKLSGASVSEVKTIVHPAEITSVAFSNNGAF--LVATDQS-------RKVIPYSVANN- 523
Query: 394 LLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTD 433
++ H + + F H K+ ++WS D L S D
Sbjct: 524 --FELAHTNSWTF----HTAKVACVSWSPDNVRLATGSLD 557
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 128 HQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKI 187
H + V FS NG L + D +I P ++N + + N W
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVI----------PYSVANNFELAHTNS--WTF--- 534
Query: 188 LRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHK 223
H V +SWSP + L +GS+DN+ I+W+++K
Sbjct: 535 ---HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 80 HQKAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFA--SDLSRHQKAVNVVRF 137
H + V FS NG L + D K I Y N E A + + H V V +
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN-----NFELAHTNSWTFHTAKVACVSW 544
Query: 138 SPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWI 183
SP+ LA+G ++++IVW D P +VN W+
Sbjct: 545 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 590
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 85/224 (37%), Gaps = 52/224 (23%)
Query: 126 SRHQKAVNVVRFSPNGELLASGDDESTIIVW--KQKTD---QDLPEF--PSSNLDEENVN 178
+ H V + SP+G ASGD + +W Q T +P F P ++ ++ +
Sbjct: 56 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES 115
Query: 179 KEHWIVTKI------------------LRGHLEDVYDISWSPTS-THLISGSVDNTAIMW 219
K V + L G + + + P+ +ISGS DNT ++
Sbjct: 116 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 175
Query: 220 DVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPV 279
+ K EH KFV V ++P A+ D ++ Y+ V
Sbjct: 176 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN---------------GV 220
Query: 280 DSSHELFDKVVPLFHDDTMKSFFRR-----LTFSPDGQLLIAPS 318
D + +F DD++K+ LT+SPDG + + S
Sbjct: 221 DGTK------TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 21/148 (14%)
Query: 128 HQKAVNVVRFSP-NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTK 186
H+ VN R+ P N ++A+ S ++V+ P+ PS + +
Sbjct: 125 HEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPD-PSGECNPD----------L 173
Query: 187 ILRGHLEDVYDISW-SPTSTHLISGSVDNTAIMWDVHKGKNLG-------ILTEHKKFVQ 238
LRGH ++ Y +SW S S HL+S S D+T +WD++ G G I T H V+
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 239 GVAWDPKNQYV-ATLSSDRSLRTYSIQS 265
VAW ++ + +++ D+ L + +S
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRS 261
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 24/193 (12%)
Query: 77 LSRHQKAVNVVRFSPN--GELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNV 134
L HQK + ++ N G LL++ DD +W + V+ + + H V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 135 VRFSPNGE-LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLE 193
V + E L S D+ + +W +++ PS +D H
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNT--TSKPSHLVD----------------AHTA 276
Query: 194 DVYDISWSPTSTHLIS-GSVDNTAIMWDVHKGK-NLGILTEHKKFVQGVAWDPKNQYV-A 250
+V +S++P S +++ GS D T +WD+ K L HK + V W P N+ + A
Sbjct: 277 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336
Query: 251 TLSSDRSLRTYSI 263
+ +DR L + +
Sbjct: 337 SSGTDRRLNVWDL 349
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 29/150 (19%)
Query: 80 HQKAVNVVRFSPNGE-LLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRF 137
H VN + F+P E +LA+G D +W L + + E H+ + V +
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFE------SHKDEIFQVHW 327
Query: 138 SPNGE-LLASGDDESTIIVW------KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRG 190
SP+ E +LAS + + VW ++++ +D + P L I G
Sbjct: 328 SPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELL-------------FIHGG 374
Query: 191 HLEDVYDISWSPTSTHLI-SGSVDNTAIMW 219
H + D SW+P +I S S DN +W
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 21/148 (14%)
Query: 128 HQKAVNVVRFSP-NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTK 186
H+ VN R+ P N ++A+ S ++V+ P+ PS + +
Sbjct: 125 HEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPD-PSGECNPD----------L 173
Query: 187 ILRGHLEDVYDISW-SPTSTHLISGSVDNTAIMWDVHKGKNLG-------ILTEHKKFVQ 238
LRGH ++ Y +SW S S HL+S S D+T +WD++ G G I T H V+
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 239 GVAWDPKNQ-YVATLSSDRSLRTYSIQS 265
VAW ++ +++ D+ L + +S
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRS 261
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 24/193 (12%)
Query: 77 LSRHQKAVNVVRFSPN--GELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNV 134
L HQK + ++ N G LL++ DD +W + V+ + + H V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 135 VRFSPNGE-LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLE 193
V + E L S D+ +++W +++ PS +D H
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNT--TSKPSHLVD----------------AHTA 276
Query: 194 DVYDISWSPTSTHLIS-GSVDNTAIMWDVHKGK-NLGILTEHKKFVQGVAWDPKNQYV-A 250
+V +S++P S +++ GS D T +WD+ K L HK + V W P N+ + A
Sbjct: 277 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336
Query: 251 TLSSDRSLRTYSI 263
+ +DR L + +
Sbjct: 337 SSGTDRRLNVWDL 349
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 29/152 (19%)
Query: 80 HQKAVNVVRFSPNGE-LLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRF 137
H VN + F+P E +LA+G D +W L + + E H+ + V +
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFE------SHKDEIFQVHW 327
Query: 138 SPNGE-LLASGDDESTIIVW------KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRG 190
SP+ E +LAS + + VW ++++ +D + P L I G
Sbjct: 328 SPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELL-------------FIHGG 374
Query: 191 HLEDVYDISWSPTSTHLI-SGSVDNTAIMWDV 221
H + D SW+P +I S S DN +W +
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 18/163 (11%)
Query: 128 HQKAVNVVRFSP-NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTK 186
H V + + P N ++ASG ++ T++VW E P L + ++T
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVW---------EIPDGGL---VLPLREPVIT- 126
Query: 187 ILRGHLEDVYDISWSPTSTH-LISGSVDNTAIMWDVHKGKNLGILTE--HKKFVQGVAWD 243
L GH + V ++W PT+ + L+S DN ++WDV G + L H + V W
Sbjct: 127 -LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 244 PKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELF 286
+ T D+ +R + V++ R H +F
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF 228
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 187 ILRGHLEDVYDISWSPTSTHLI-SGSVDNTAIMWDVHKGKNLGILTE-------HKKFVQ 238
++ GH V DI+W P + ++I SGS D T ++W++ G + L E H K V
Sbjct: 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 239 GVAWDPKNQYV 249
VAW P Q V
Sbjct: 136 IVAWHPTAQNV 146
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/342 (20%), Positives = 124/342 (36%), Gaps = 82/342 (23%)
Query: 140 NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDIS 199
N +++ S + +II+WK D +K + + + L GH V D+
Sbjct: 394 NADIIVSASRDKSIILWKLTKD----------------DKAYGVAQRRLTGHSHFVEDVV 437
Query: 200 WSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLR 259
S +SGS D +WD+ G + H K V VA+ N+ + + S DR+++
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 260 TYSI--QSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAP 317
++ + K IS H D + + FSP+ + P
Sbjct: 498 LWNTLGECKYTISEGGEG------------------HRDWVSC----VRFSPN---TLQP 532
Query: 318 SGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCP-----VLFELKPSD 372
+ + D T K ++++ R+ L + ++ C V+ ++
Sbjct: 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592
Query: 373 DKPLFKL------------PYRIVIAVATENNILLYDTQ--------------------H 400
K L+ L P R + ATE+ I ++D + +
Sbjct: 593 GKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADN 652
Query: 401 ASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFG 442
+ P A + Y T + WS+DG L + TDG + G
Sbjct: 653 SGPAATKRKVIYC--TSLNWSADGSTLFSGYTDGVIRVWGIG 692
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 34/212 (16%)
Query: 61 LTERESGIANVEFASDLSRHQKAVNVVRFS-PNGELLASGDDVGKEIWYLTERESGIANV 119
L + +G++ F H K V V FS N +++++ D ++W G
Sbjct: 456 LWDLAAGVSTRRFVG----HTKDVLSVAFSLDNRQIVSASRDRTIKLW----NTLGECKY 507
Query: 120 EFASDLSRHQKAVNVVRFSPNG--ELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENV 177
+ H+ V+ VRFSPN + S + T+ VW
Sbjct: 508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW--------------------- 546
Query: 178 NKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFV 237
N + + L GH V ++ SP + SG D ++WD+ +GK L L E +
Sbjct: 547 NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL-EANSVI 605
Query: 238 QGVAWDPKNQYVATLSSDRSLRTYSIQSKKVI 269
+ + P N+Y +++ ++ + ++SK ++
Sbjct: 606 HALCFSP-NRYWLCAATEHGIKIWDLESKSIV 636
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 18/163 (11%)
Query: 128 HQKAVNVVRFSP-NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTK 186
H V + + P N ++ASG ++ T++VW E P L + ++T
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVW---------EIPDGGL---VLPLREPVIT- 126
Query: 187 ILRGHLEDVYDISWSPTSTH-LISGSVDNTAIMWDVHKGKNLGILTE--HKKFVQGVAWD 243
L GH + V ++W PT+ + L+S DN ++WDV G + L H + V W
Sbjct: 127 -LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 244 PKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELF 286
+ T D+ +R + V++ R H +F
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF 228
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 187 ILRGHLEDVYDISWSPTSTHLI-SGSVDNTAIMWDVHKGKNLGILTE-------HKKFVQ 238
++ GH V DI+W P + ++I SGS D T ++W++ G + L E H K V
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 239 GVAWDPKNQYV 249
VAW P Q V
Sbjct: 136 IVAWHPTAQNV 146
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 35/170 (20%)
Query: 194 DVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLS 253
D + +++SP S +L +G+ ++ V GK L KF+ +A+ P +Y+A+ +
Sbjct: 124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183
Query: 254 SDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQL 313
D + + I + K++ H L +P+ R LTFSPD QL
Sbjct: 184 IDGIINIFDIATGKLL-------------HTLEGHAMPI----------RSLTFSPDSQL 220
Query: 314 LIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCP 363
L+ S D K V H L+ A + + V CP
Sbjct: 221 LVTAS-----DDGYIKIYDVQHANLAGTLSGHAS-------WVLNVAFCP 258
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 27/162 (16%)
Query: 87 VRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLAS 146
+ FSP+ + LA+G VGK + ESG E++ L K + + +SP+G+ LAS
Sbjct: 128 LAFSPDSQYLATGTHVGKV--NIFGVESG--KKEYS--LDTRGKFILSIAYSPDGKYLAS 181
Query: 147 GDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTH 206
G + I ++ T + L L GH + +++SP S
Sbjct: 182 GAIDGIINIFDIATGKLL---------------------HTLEGHAMPIRSLTFSPDSQL 220
Query: 207 LISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248
L++ S D ++DV G L+ H +V VA+ P + +
Sbjct: 221 LVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH 262
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 27/185 (14%)
Query: 77 LSRHQKAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVR 136
L K + + +SP+G+ LASG G IA + L H + +
Sbjct: 160 LDTRGKFILSIAYSPDGKYLASGAIDG------IINIFDIATGKLLHTLEGHAMPIRSLT 213
Query: 137 FSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVY 196
FSP+ +LL + D+ I ++ D ++ N + L GH V
Sbjct: 214 FSPDSQLLVTASDDGYIKIY----------------DVQHAN-----LAGTLSGHASWVL 252
Query: 197 DISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDR 256
++++ P TH +S S D + +WDV + +H+ V GV ++ + ++ D+
Sbjct: 253 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ 312
Query: 257 SLRTY 261
+ Y
Sbjct: 313 EIHIY 317
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 39/212 (18%)
Query: 125 LSRHQKAVNVVRFSPNG-ELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWI 183
L H V + +P +++ S + TII+WK D+ P
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ-------------- 56
Query: 184 VTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWD 243
+ LRGH V D+ S +SGS D T +WD+ G H K V VA+
Sbjct: 57 --RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 114
Query: 244 PKNQYVATLSSDRSLRT--------YSIQSKKVISRACRSKLPVDSSHEL-----FDKVV 290
N+ + + S D++++ Y++Q + + +SS+ + +DK+V
Sbjct: 115 SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 291 PLFHDDTMK---------SFFRRLTFSPDGQL 313
+++ K + +T SPDG L
Sbjct: 175 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 206
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 91/218 (41%), Gaps = 39/218 (17%)
Query: 55 TGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERE 113
T ++W LT +G F H K V V FS + + SG D ++W
Sbjct: 86 TLRLWDLT---TGTTTRRFVG----HTKDVLSVAFSSDNRQIVSGSRDKTIKLW------ 132
Query: 114 SGIANVEFASDLSRHQKAVNVVRFSPNGE--LLASGDDESTIIVWKQKTDQDLPEFPSSN 171
+ + ++ H + V+ VRFSPN ++ S + + VW N
Sbjct: 133 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW--------------N 178
Query: 172 LDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILT 231
L + H GH + ++ SP + SG D A++WD+++GK+L L
Sbjct: 179 LANCKLKTNH-------IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL- 230
Query: 232 EHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVI 269
+ + + + P N+Y ++ S++ + ++ K ++
Sbjct: 231 DGGDIINALCFSP-NRYWLCAATGPSIKIWDLEGKIIV 267
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 38/176 (21%)
Query: 80 HQKAVNVVRFSPNGE---LLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVR 136
H + V+ VRFSPN +++ G D ++W L AN + ++ H +N V
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL-------ANCKLKTNHIGHTGYLNTVT 199
Query: 137 FSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVN--KEHWIVT--------- 185
SP+G L ASG + ++W + L ++ +W+
Sbjct: 200 VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIW 259
Query: 186 ----KILRGHLED-------------VYDISWSPTSTHLISGSVDNTAIMWDVHKG 224
KI+ L+ ++WS L +G DN +W V G
Sbjct: 260 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 24/193 (12%)
Query: 77 LSRHQKAVNVVRFSPN--GELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNV 134
L HQK + ++PN G LL++ DD +W ++ V+ + + H V
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 135 VRFSPNGE-LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLE 193
V + E L S D+ +++W +++ PS ++D H
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNN--TSKPSHSVD----------------AHTA 274
Query: 194 DVYDISWSPTSTHLIS-GSVDNTAIMWDVHKGK-NLGILTEHKKFVQGVAWDPKNQYV-A 250
+V +S++P S +++ GS D T +WD+ K L HK + V W P N+ + A
Sbjct: 275 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 334
Query: 251 TLSSDRSLRTYSI 263
+ +DR L + +
Sbjct: 335 SSGTDRRLNVWDL 347
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 188 LRGHLEDVYDISWSPT-STHLISGSVDNTAIMWDVHKGKNLG-------ILTEHKKFVQG 239
LRGH ++ Y +SW+P S HL+S S D+T +WD+ G I T H V+
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 240 VAWDPKNQYV-ATLSSDRSLRTYSIQS 265
V+W ++ + +++ D+ L + +S
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRS 259
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 21/148 (14%)
Query: 80 HQKAVNVVRFSPNGE-LLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRF 137
H VN + F+P E +LA+G D +W L + + + E H+ + V++
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE------SHKDEIFQVQW 325
Query: 138 SPNGE-LLASGDDESTIIVW--KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLED 194
SP+ E +LAS + + VW + ++ PE D E+ E + I GH
Sbjct: 326 SPHNETILASSGTDRRLNVWDLSKIGEEQSPE------DAEDGPPE---LLFIHGGHTAK 376
Query: 195 VYDISWSPTSTHLI-SGSVDNTAIMWDV 221
+ D SW+P +I S S DN +W +
Sbjct: 377 ISDFSWNPNEPWVICSVSEDNIMQVWQM 404
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 24/193 (12%)
Query: 77 LSRHQKAVNVVRFSPN--GELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNV 134
L HQK + ++PN G LL++ DD +W + ++ + + H V
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 135 VRFSPNGE-LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLE 193
V + E L S D+ +++W + + PS +D H
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNN--TSKPSHTVD----------------AHTA 280
Query: 194 DVYDISWSPTSTHLIS-GSVDNTAIMWDVHKGK-NLGILTEHKKFVQGVAWDPKNQYV-A 250
+V +S++P S +++ GS D T +WD+ K L HK + V W P N+ + A
Sbjct: 281 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 340
Query: 251 TLSSDRSLRTYSI 263
+ +DR L + +
Sbjct: 341 SSGTDRRLHVWDL 353
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 24/126 (19%)
Query: 128 HQKAVNVVRFSP-NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTK 186
H+ VN R+ P N ++A+ S ++V+ PE PS +
Sbjct: 129 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-PSGECQPD----------L 177
Query: 187 ILRGHLEDVYDISWSPT-STHLISGSVDNTAIMWDVHK---------GKNLGILTEHKKF 236
LRGH ++ Y +SW+P + +L+S S D+T +WD++ KN I T H
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN--IFTGHTAV 235
Query: 237 VQGVAW 242
V+ VAW
Sbjct: 236 VEDVAW 241
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 29/152 (19%)
Query: 80 HQKAVNVVRFSPNGE-LLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRF 137
H VN + F+P E +LA+G D +W L + + + E H+ + V++
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE------SHKDEIFQVQW 331
Query: 138 SPNGE-LLASGDDESTIIVW------KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRG 190
SP+ E +LAS + + VW ++++ +D + P L I G
Sbjct: 332 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL-------------FIHGG 378
Query: 191 HLEDVYDISWSPTSTHLI-SGSVDNTAIMWDV 221
H + D SW+P +I S S DN +W +
Sbjct: 379 HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 24/193 (12%)
Query: 77 LSRHQKAVNVVRFSPN--GELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNV 134
L HQK + ++PN G LL++ DD +W + ++ + + H V
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 135 VRFSPNGE-LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLE 193
V + E L S D+ +++W + + PS +D H
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNN--TSKPSHTVD----------------AHTA 278
Query: 194 DVYDISWSPTSTHLIS-GSVDNTAIMWDVHKGK-NLGILTEHKKFVQGVAWDPKNQYV-A 250
+V +S++P S +++ GS D T +WD+ K L HK + V W P N+ + A
Sbjct: 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338
Query: 251 TLSSDRSLRTYSI 263
+ +DR L + +
Sbjct: 339 SSGTDRRLHVWDL 351
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 24/126 (19%)
Query: 128 HQKAVNVVRFSP-NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTK 186
H+ VN R+ P N ++A+ S ++V+ PE PS +
Sbjct: 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-PSGECQPD----------L 175
Query: 187 ILRGHLEDVYDISWSPT-STHLISGSVDNTAIMWDVHK---------GKNLGILTEHKKF 236
LRGH ++ Y +SW+P + +L+S S D+T +WD++ KN I T H
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN--IFTGHTAV 233
Query: 237 VQGVAW 242
V+ VAW
Sbjct: 234 VEDVAW 239
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 29/152 (19%)
Query: 80 HQKAVNVVRFSPNGE-LLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRF 137
H VN + F+P E +LA+G D +W L + + + E H+ + V++
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE------SHKDEIFQVQW 329
Query: 138 SPNGE-LLASGDDESTIIVW------KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRG 190
SP+ E +LAS + + VW ++++ +D + P L I G
Sbjct: 330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL-------------FIHGG 376
Query: 191 HLEDVYDISWSPTSTHLI-SGSVDNTAIMWDV 221
H + D SW+P +I S S DN +W +
Sbjct: 377 HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 108/287 (37%), Gaps = 62/287 (21%)
Query: 188 LRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQ 247
L GH V D++ S +S S D++ +W++ G+ H K V VA+ P N+
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 248 YVATLSSDRSLRTYSIQSK--KVISRACRSKL------------PVDSSHELFDKVVPLF 293
+ + D +LR ++++ + +SR + PV S +D +V ++
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGG-WDNLVKVW 181
Query: 294 HDDTMK---------SFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRA-CLN 343
T + ++ +T SPDG L + S + ++ T+ L+
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLC---------ASSDKDGVARLWDLTKGEALS 232
Query: 344 KPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASP 403
+ A P Q + F P R + ATE I ++D ++
Sbjct: 233 EMAAGAPINQ----------ICFS------------PNRYWMCAATEKGIRIFDLENKDI 270
Query: 404 FAFIANIHYT------KLTDITWSSDGKVLIASSTDGYCSIISFGDN 444
+A H + I WS+DG L + TD + +N
Sbjct: 271 IVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSEN 317
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 32/198 (16%)
Query: 77 LSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVV 135
L H V+ V S NG S D +W L ++G +F H K V V
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNL---QNGQCQYKFLG----HTKDVLSV 115
Query: 136 RFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRG-HLED 194
FSP+ + SG ++ + VW NV E + + RG H +
Sbjct: 116 AFSPDNRQIVSGGRDNALRVW-------------------NVKGE--CMHTLSRGAHTDW 154
Query: 195 VYDISWSPT--STHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATL 252
V + +SP+ + ++SG DN +WD+ G+ + L H +V V P A+
Sbjct: 155 VSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASS 214
Query: 253 SSDRSLRTYSIQSKKVIS 270
D R + + + +S
Sbjct: 215 DKDGVARLWDLTKGEALS 232
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 69/185 (37%), Gaps = 46/185 (24%)
Query: 72 EFASDLSR--HQKAVNVVRFSPNGE---LLASGDDVGKEIWYLTERESGIANVEFASDLS 126
E LSR H V+ VRFSP+ + +++ G D ++W L A +DL
Sbjct: 141 ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL-------ATGRLVTDLK 193
Query: 127 RHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSN--------------- 171
H V V SP+G L AS D + +W + L E +
Sbjct: 194 GHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMC 253
Query: 172 ---------LDEENVNKEHWIVTKILRGH------LEDVYDISWSPTSTHLISGSVDNTA 216
D EN + I+ ++ H + + I+WS + L SG DN
Sbjct: 254 AATEKGIRIFDLENKD----IIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVI 309
Query: 217 IMWDV 221
+W V
Sbjct: 310 RVWGV 314
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 183 IVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAW 242
+ + L+GH VY + W+P ++S S D I+W+ + + H +V A+
Sbjct: 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAF 116
Query: 243 DPKNQYVATLSSDRSLRTYSIQSK 266
P Q VA D + +++ S+
Sbjct: 117 APNGQSVACGGLDSACSIFNLSSQ 140
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 30/171 (17%)
Query: 89 FSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGEL-LAS 146
F+PNG+ +A G D I+ L+ + N+ + L+ H+ + ++ P+ E L +
Sbjct: 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175
Query: 147 GDDESTIIVWKQKTDQDLP----EFPSSN------LDEENVNKEHWI------------- 183
G + T ++W T Q + EFPS + L ++N +I
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235
Query: 184 -----VTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGI 229
+ GH D+ + + P +GS D T ++D+ G L +
Sbjct: 236 RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 71/184 (38%), Gaps = 45/184 (24%)
Query: 137 FSPNGELLASG--DDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLED 194
F+PNG+ +A G D +I + D+D P V+++L GH
Sbjct: 116 FAPNGQSVACGGLDSACSIFNLSSQADRD-GNMP---------------VSRVLTGHKGY 159
Query: 195 VYDISWSP-TSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLS 253
+ P T LI+GS D T ++WDV G+ + I P L
Sbjct: 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF---------PSGHTADVL- 209
Query: 254 SDRSLRTYSIQSKKVISRACRSKLPVDSSHELFD-----KVVPLFHDDTMKSFFRRLTFS 308
SL S+ + IS +C D++ L+D + V +H + + F
Sbjct: 210 ---SLSINSLNANMFISGSC------DTTVRLWDLRITSRAVRTYHGH--EGDINSVKFF 258
Query: 309 PDGQ 312
PDGQ
Sbjct: 259 PDGQ 262
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 128 HQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKI 187
H+ +N V+F P+G+ +G D+ T ++ +T L + N + + + E IVT
Sbjct: 248 HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY---NREPDRNDNELPIVTS- 303
Query: 188 LRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGK---NLGIL-TEHKKFVQGVAWD 243
+++S + L +G + +WD + NLG L H+ + +
Sbjct: 304 ----------VAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS 353
Query: 244 PKNQYVATLSSDRSLRTYSIQSKKVI 269
+ T S D++L+ ++ + I
Sbjct: 354 SDGSALCTGSWDKNLKIWAFSGHRKI 379
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 80 HQKAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQK---AVNVVR 136
H+ +N V+F P+G+ +G D G L + +G + + R+ V V
Sbjct: 248 HEGDINSVKFFPDGQRFGTGSDDGTC--RLFDMRTGHQLQVYNREPDRNDNELPIVTSVA 305
Query: 137 FSPNGELLASGDDESTIIVW 156
FS +G LL +G VW
Sbjct: 306 FSISGRLLFAGYSNGDCYVW 325
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 24/193 (12%)
Query: 77 LSRHQKAVNVVRFSPN--GELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNV 134
L HQK + ++PN G LL++ DD +W + ++ + + H V
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 135 VRFSPNGE-LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLE 193
V + E L S D+ +++W + + PS +D H
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNN--TSKPSHTVD----------------AHTA 282
Query: 194 DVYDISWSPTSTHLIS-GSVDNTAIMWDVHKGK-NLGILTEHKKFVQGVAWDPKNQYV-A 250
+V +S++P S +++ GS D T +WD+ K L HK + V W P N+ + A
Sbjct: 283 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 342
Query: 251 TLSSDRSLRTYSI 263
+ +DR L + +
Sbjct: 343 SSGTDRRLHVWDL 355
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 24/126 (19%)
Query: 128 HQKAVNVVRFSP-NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTK 186
H+ VN R+ P N ++A+ S ++V+ PE PS +
Sbjct: 131 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-PSGECQPD----------L 179
Query: 187 ILRGHLEDVYDISWSPT-STHLISGSVDNTAIMWDVHK---------GKNLGILTEHKKF 236
LRGH ++ Y +SW+P + +L+S S D+T +WD++ KN I T H
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN--IFTGHTAV 237
Query: 237 VQGVAW 242
V+ VAW
Sbjct: 238 VEDVAW 243
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 29/152 (19%)
Query: 80 HQKAVNVVRFSPNGE-LLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRF 137
H VN + F+P E +LA+G D +W L + + + E H+ + V++
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE------SHKDEIFQVQW 333
Query: 138 SPNGE-LLASGDDESTIIVW------KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRG 190
SP+ E +LAS + + VW ++++ +D + P L I G
Sbjct: 334 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL-------------FIHGG 380
Query: 191 HLEDVYDISWSPTSTHLI-SGSVDNTAIMWDV 221
H + D SW+P +I S S DN +W +
Sbjct: 381 HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 27/145 (18%)
Query: 125 LSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIV 184
L H AV V++ +G + SG + + VW +T+ L
Sbjct: 235 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL-------------------- 272
Query: 185 TKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDP 244
L+GH VY + + H++SGS+D + +WDV G + LT H+ G+ +
Sbjct: 273 -HTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--EL 327
Query: 245 KNQYVATLSSDRSLRTYSIQSKKVI 269
K+ + + ++D +++ + I++ + +
Sbjct: 328 KDNILVSGNADSTVKIWDIKTGQCL 352
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 207 LISGSVDNTAIMWDVHKGKNLGILTEH-----------KKFVQGV------AWDPKNQYV 249
++SGS D T +WD+ G+ L +L H ++ V G WDP+ +
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC 271
Query: 250 ATLSSDRSLRTYSIQ 264
+ R YS+Q
Sbjct: 272 LHTLQGHTNRVYSLQ 286
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 207 LISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQ-YVATLSSDRSLRTYSIQS 265
L+SG+ D+T +WD+ G+ L L K V N+ +V T S D +++ + +++
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391
Query: 266 KKVI 269
+ I
Sbjct: 392 GEFI 395
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 27/141 (19%)
Query: 131 AVNVVRFSPN---GELLASGDDESTIIVWK-QKTDQDLPEFPSSNLDEENVNKEHWIVTK 186
++ + FSP G L +G + + W+ Q + Q +P K
Sbjct: 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--------------------K 80
Query: 187 ILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAW--DP 244
+ H V D+ WS + + + S D TA MWD+ + + I +H V+ + W P
Sbjct: 81 AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI-AQHDAPVKTIHWIKAP 139
Query: 245 KNQYVATLSSDRSLRTYSIQS 265
V T S D++L+ + +S
Sbjct: 140 NYSCVMTGSWDKTLKFWDTRS 160
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 139 PNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDI 198
PN LL S + T+I WK D P + +GH V D
Sbjct: 30 PN--LLLSASRDKTLISWKLTGDDQKFGVP----------------VRSFKGHSHIVQDC 71
Query: 199 SWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSL 258
+ + + +S S D T +WDV G+ HK V V D K + + S D+++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 259 RTYSIQSK 266
+ ++I+ +
Sbjct: 132 KVWTIKGQ 139
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 77 LSRHQKAVNVVRFSPNGE-------LLASGDDVGKEIWYLTERESGIANVEFASDLSRHQ 129
L H V+ VR PN + ++++G+D + W L + + +D H
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-------FQIEADFIGHN 196
Query: 130 KAVNVVRFSPNGELLASGDDESTIIVW 156
+N + SP+G L+AS + I++W
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 139 PNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDI 198
PN LL S + T+I WK D P + +GH V D
Sbjct: 30 PN--LLLSASRDKTLISWKLTGDDQKFGVP----------------VRSFKGHSHIVQDC 71
Query: 199 SWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSL 258
+ + + +S S D T +WDV G+ HK V V D K + + S D+++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 259 RTYSIQSK 266
+ ++I+ +
Sbjct: 132 KVWTIKGQ 139
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 77 LSRHQKAVNVVRFSPNGE-------LLASGDDVGKEIWYLTERESGIANVEFASDLSRHQ 129
L H V+ VR PN + ++++G+D + W L + + +D H
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-------FQIEADFIGHN 196
Query: 130 KAVNVVRFSPNGELLASGDDESTIIVW 156
+N + SP+G L+AS + I++W
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 139 PNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDI 198
PN LL S + T+I WK D P + +GH V D
Sbjct: 24 PN--LLLSASRDKTLISWKLTGDDQKFGVP----------------VRSFKGHSHIVQDC 65
Query: 199 SWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSL 258
+ + + +S S D T +WDV G+ HK V V D K + + S D+++
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 259 RTYSIQSK 266
+ ++I+ +
Sbjct: 126 KVWTIKGQ 133
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 77 LSRHQKAVNVVRFSPNGE-------LLASGDDVGKEIWYLTERESGIANVEFASDLSRHQ 129
L H V+ VR PN + ++++G+D + W L + + +D H
Sbjct: 138 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-------FQIEADFIGHN 190
Query: 130 KAVNVVRFSPNGELLASGDDESTIIVW 156
+N + SP+G L+AS + I++W
Sbjct: 191 SNINTLTASPDGTLIASAGKDGEIMLW 217
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 139 PNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDI 198
PN LL S + T+I WK D P + +GH V D
Sbjct: 30 PN--LLLSASRDKTLISWKLTGDDQKFGVP----------------VRSFKGHSHIVQDC 71
Query: 199 SWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSL 258
+ + + +S S D T +WDV G+ HK V V D K + + S D+++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 259 RTYSIQSK 266
+ ++I+ +
Sbjct: 132 KVWTIKGQ 139
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 77 LSRHQKAVNVVRFSPNGE-------LLASGDDVGKEIWYLTERESGIANVEFASDLSRHQ 129
L H V+ VR PN + ++++G+D + W L + + +D H
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-------FQIEADFIGHN 196
Query: 130 KAVNVVRFSPNGELLASGDDESTIIVW 156
+N + SP+G L+AS + I++W
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 139 PNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDI 198
PN LL S + T+I WK D P + +GH V D
Sbjct: 30 PN--LLLSASRDKTLISWKLTGDDQKFGVP----------------VRSFKGHSHIVQDC 71
Query: 199 SWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSL 258
+ + + +S S D T +WDV G+ HK V V D K + + S D+++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 259 RTYSIQSK 266
+ ++I+ +
Sbjct: 132 KVWTIKGQ 139
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 77 LSRHQKAVNVVRFSPNGE-------LLASGDDVGKEIWYLTERESGIANVEFASDLSRHQ 129
L H V+ VR PN + ++++G+D + W L + + +D H
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-------FQIEADFIGHN 196
Query: 130 KAVNVVRFSPNGELLASGDDESTIIVW 156
+N + SP+G L+AS + I++W
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 49/232 (21%)
Query: 80 HQKAVNVVRFSP-NGELLASGDDVGKEIWYLTERES--GIANVEFASDLSR-----HQKA 131
H +N + P G + SG G + Y E S + + R H+ +
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 132 VNVVRFSPNGE-LLASGDDESTIIVWKQKTDQ--DLPEFPSSNLDEEN--VNKEHWIV-- 184
V V++ P+ + S + T+ VW T Q D+ F + V+ +H +V
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Query: 185 -----------------TKILRGHLEDVYDISWSPTSTHLIS-GSVDNTAIMWDV----- 221
+ IL+GH +++ +SWSP ++++ S D+ +WDV
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221
Query: 222 -------HKGKNLGIL----TEHKKFVQGVAWDPKNQYVATLSSDRSLRTYS 262
H GK + T H V G+ + ++ T+ +D +R ++
Sbjct: 222 CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 139 PNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDI 198
PN LL S + T+I WK D P + +GH V D
Sbjct: 30 PN--LLLSASRDKTLISWKLTGDDQKFGVP----------------VRSFKGHSHIVQDC 71
Query: 199 SWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSL 258
+ + + +S S D T +WDV G+ HK V V D K + + S D+++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 259 RTYSIQSK 266
+ ++I+ +
Sbjct: 132 KVWTIKGQ 139
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 77 LSRHQKAVNVVRFSPNGE-------LLASGDDVGKEIWYLTERESGIANVEFASDLSRHQ 129
L H V+ VR PN + ++++G+D + W L + + +D H
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ-------FQIEADFIGHN 196
Query: 130 KAVNVVRFSPNGELLASGDDESTIIVW 156
+N + SP+G L+AS + I +W
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIXLW 223
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 9/163 (5%)
Query: 186 KILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPK 245
+I + H+ ++ + + P+ LIS S D +W V G N L H+ V +A +
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 189
Query: 246 NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVD--SSHELFDKVVPLFHD-DTMKSFF 302
+ V + S D ++R + + I R + P D +S LF H+ T K
Sbjct: 190 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK-- 247
Query: 303 RRLTFSPDGQLLIAP--SGCL--ENSDSTRKPISVTHVFTRAC 341
L F G+ +IA SG + N S + I + FT +C
Sbjct: 248 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSC 290
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 26/152 (17%)
Query: 128 HQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKI 187
H + ++F P+GE L S + + +W K D P +
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNP--------------------RT 173
Query: 188 LRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQ 247
L GH V DI+ +++S S+D T +W+ G + + GV N
Sbjct: 174 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV-----NS 228
Query: 248 YVATLSSDRSLRTYSIQSKKVISRACRSKLPV 279
+ +DR L S K + K +
Sbjct: 229 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVI 260
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 9/163 (5%)
Query: 186 KILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPK 245
+I + H+ ++ + + P+ LIS S D +W V G N L H+ V +A +
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192
Query: 246 NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVD--SSHELFDKVVPLFHD-DTMKSFF 302
+ V + S D ++R + + I R + P D +S LF H+ T K
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK-- 250
Query: 303 RRLTFSPDGQLLIAP--SGCL--ENSDSTRKPISVTHVFTRAC 341
L F G+ +IA SG + N S + I + FT +C
Sbjct: 251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSC 293
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 26/152 (17%)
Query: 128 HQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKI 187
H + ++F P+GE L S + + +W K D P +
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNP--------------------RT 176
Query: 188 LRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQ 247
L GH V DI+ +++S S+D T +W+ G + + GV N
Sbjct: 177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV-----NS 231
Query: 248 YVATLSSDRSLRTYSIQSKKVISRACRSKLPV 279
+ +DR L S K + K +
Sbjct: 232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVI 263
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 77/195 (39%), Gaps = 47/195 (24%)
Query: 131 AVNVVRFSP--NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
V V+FSP + L SGD+ +IVW D++ SN E NV E ++L
Sbjct: 66 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE------SNSVEVNVKSEF----QVL 115
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHK-KFVQGVAWDPKNQ 247
G + D I WD +G+ L ++ E + F ++WD N
Sbjct: 116 AGPISD----------------------ISWD-FEGRRLCVVGEGRDNFGVFISWDSGNS 152
Query: 248 YVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMK------SF 301
S S R + K+ SR RS D +F + P + + SF
Sbjct: 153 LGEV--SGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF 208
Query: 302 FRRLTFSPD-GQLLI 315
R + FSPD G+ +I
Sbjct: 209 VRDVEFSPDSGEFVI 223
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 77/195 (39%), Gaps = 47/195 (24%)
Query: 131 AVNVVRFSP--NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
V V+FSP + L SGD+ +IVW D++ SN E NV E ++L
Sbjct: 66 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE------SNSVEVNVKSEF----QVL 115
Query: 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHK-KFVQGVAWDPKNQ 247
G + D I WD +G+ L ++ E + F ++WD N
Sbjct: 116 AGPISD----------------------ISWD-FEGRRLCVVGEGRDNFGVFISWDSGNS 152
Query: 248 YVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMK------SF 301
S S R + K+ SR RS D +F + P + + SF
Sbjct: 153 LGEV--SGHSQRINACHLKQ--SRPXRSXTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF 208
Query: 302 FRRLTFSPD-GQLLI 315
R + FSPD G+ +I
Sbjct: 209 VRDVEFSPDSGEFVI 223
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 188 LRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDP 244
L+GH +V ++W L SG DN +WD T H V+ VAW P
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 90/220 (40%), Gaps = 37/220 (16%)
Query: 77 LSRHQKAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVR 136
++ HQ V + + N +L+SG G + + IAN + + L H V +
Sbjct: 172 MAGHQARVGCLSW--NRHVLSSGSRSGA----IHHHDVRIANHQIGT-LQGHSSEVCGLA 224
Query: 137 FSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVY 196
+ +G LASG +++ + +W ++ +P+F +N H V
Sbjct: 225 WRSDGLQLASGGNDNVVQIWDARS--SIPKFTKTN-------------------HNAAVK 263
Query: 197 DISWSPTSTHLIS---GSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLS 253
++W P ++L++ G++D W+ G + + + V + W P ++ + +
Sbjct: 264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTH 322
Query: 254 S--DRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVP 291
D +L +S S + + +P + L+ + P
Sbjct: 323 GFPDNNLSIWSYSSSGLTKQV---DIPAHDTRVLYSALSP 359
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 384 VIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSI 438
V+AVA E N+ +++ S A T + + WS DG L +G I
Sbjct: 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI 160
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 55/184 (29%)
Query: 80 HQKAVNVVRFSPN--GELLASGDDVGKEIWYLTERESGIANVEFASD-------LSRHQK 130
H +VN V+++P+ G LL GK ++ VEF + + H
Sbjct: 98 HSASVNSVQWAPHEYGPLLLVASSDGK-----------VSVVEFKENGTTSPIIIDAHAI 146
Query: 131 AVNVVRFSP-----NGEL--------LASGDDESTIIVWKQKTDQDLPEFPSSNLDEENV 177
VN ++P +GE +G ++ + +WK +D
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD---------------- 190
Query: 178 NKEHWIVTKILRGHLEDVYDISWSPT---STHLISGSVDNTAIMW--DVHKGKNLGILTE 232
+ +++ L GH + V D++WSPT ++L S S D T I+W D +G L +
Sbjct: 191 -AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 249
Query: 233 HKKF 236
+KF
Sbjct: 250 EEKF 253
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 55/184 (29%)
Query: 80 HQKAVNVVRFSPN--GELLASGDDVGKEIWYLTERESGIANVEFASD-------LSRHQK 130
H +VN V+++P+ G LL GK ++ VEF + + H
Sbjct: 100 HSASVNSVQWAPHEYGPLLLVASSDGK-----------VSVVEFKENGTTSPIIIDAHAI 148
Query: 131 AVNVVRFSP-----NGEL--------LASGDDESTIIVWKQKTDQDLPEFPSSNLDEENV 177
VN ++P +GE +G ++ + +WK +D
Sbjct: 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------------- 193
Query: 178 NKEHWIVTKILRGHLEDVYDISWSPT---STHLISGSVDNTAIMW--DVHKGKNLGILTE 232
+ +++ L GH + V D++WSPT ++L S S D T I+W D +G L +
Sbjct: 194 --QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 251
Query: 233 HKKF 236
+KF
Sbjct: 252 EEKF 255
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 55/184 (29%)
Query: 80 HQKAVNVVRFSPN--GELLASGDDVGKEIWYLTERESGIANVEFASD-------LSRHQK 130
H +VN V+++P+ G LL GK ++ VEF + + H
Sbjct: 98 HSASVNSVQWAPHEYGPLLLVASSDGK-----------VSVVEFKENGTTSPIIIDAHAI 146
Query: 131 AVNVVRFSP-----NGEL--------LASGDDESTIIVWKQKTDQDLPEFPSSNLDEENV 177
VN ++P +GE +G ++ + +WK +D
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD---------------- 190
Query: 178 NKEHWIVTKILRGHLEDVYDISWSPT---STHLISGSVDNTAIMW--DVHKGKNLGILTE 232
+ +++ L GH + V D++WSPT ++L S S D T I+W D +G L +
Sbjct: 191 -AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 249
Query: 233 HKKF 236
+KF
Sbjct: 250 EEKF 253
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 21/104 (20%)
Query: 122 ASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEH 181
A L+ H++ + V+++ G+LL S +S+ VW + L
Sbjct: 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---------------- 68
Query: 182 WIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGK 225
L GH ++ I + + ++GS D + +WDV G+
Sbjct: 69 -----TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 23/139 (16%)
Query: 76 DLSRHQKAVNVVRFSPNG-ELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNV 134
+L H V V ++P+ ++ G D +W L R V + R +A
Sbjct: 47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV-----ILRINRAARC 101
Query: 135 VRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLED 194
VR++PN + A G I + ++EN + W+ I +
Sbjct: 102 VRWAPNEKKFAVGSGSRVISI--------------CYFEQEN---DWWVCKHIKKPIRST 144
Query: 195 VYDISWSPTSTHLISGSVD 213
V + W P S L +GS D
Sbjct: 145 VLSLDWHPNSVLLAAGSCD 163
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 171 NLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLG-- 228
++ E++ NK W+ L+ H V + W+P S +++ D A +W + KG+
Sbjct: 33 HIYEKSGNK--WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL-KGRTWKPT 89
Query: 229 -ILTEHKKFVQGVAWDPKNQYVATLSSDRSL 258
++ + + V W P + A S R +
Sbjct: 90 LVILRINRAARCVRWAPNEKKFAVGSGSRVI 120
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 23/113 (20%)
Query: 84 VNVVRFSPNGELLASGDDVGKEIWYLTERESGI-----ANVEFASDLSRH---------- 128
++ V F+ +GELLA+GD G+ + + E+E+ I S H
Sbjct: 31 ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSL 90
Query: 129 --QKAVNVVRFSPN---GELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEEN 176
++ +N +R+ P + L S +D+ TI +WK PE NL EE+
Sbjct: 91 EIEEKINKIRWLPQKNAAQFLLSTNDK-TIKLWKISERDKRPE--GYNLKEED 140
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 67/187 (35%), Gaps = 41/187 (21%)
Query: 76 DLSRHQKAVNVVRFSPNGELLASG-DDVGKEIWYLTERESGIANVEFASDLSRHQKAVNV 134
D H + + P + SG DD+ ++W N H+ V
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN------NWALEQTFEGHEHFVMC 145
Query: 135 VRFSP-NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHW----------- 182
V F+P + ASG + T+ VW Q P F + E VN +
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWS--LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 183 ----IVTKI-----------LRGHLEDVYDISWSPTSTHLISGSVDNTAIMWD-----VH 222
+ KI L GH+ +V + PT +ISGS D T +W+ V
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Query: 223 KGKNLGI 229
K N+G+
Sbjct: 264 KTLNVGL 270
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 67/187 (35%), Gaps = 41/187 (21%)
Query: 76 DLSRHQKAVNVVRFSPNGELLASG-DDVGKEIWYLTERESGIANVEFASDLSRHQKAVNV 134
D H + + P + SG DD+ ++W N H+ V
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN------NWALEQTFEGHEHFVMC 145
Query: 135 VRFSP-NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHW----------- 182
V F+P + ASG + T+ VW Q P F + E VN +
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWS--LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 183 ----IVTKI-----------LRGHLEDVYDISWSPTSTHLISGSVDNTAIMWD-----VH 222
+ KI L GH+ +V + PT +ISGS D T +W+ V
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Query: 223 KGKNLGI 229
K N+G+
Sbjct: 264 KTLNVGL 270
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 23/139 (16%)
Query: 76 DLSRHQKAVNVVRFSPNG-ELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNV 134
+L H V + ++P+ ++ G D +W L R V + R +A
Sbjct: 47 ELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV-----ILRINRAARC 101
Query: 135 VRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLED 194
VR++PN + A G I + ++EN + W+ I +
Sbjct: 102 VRWAPNEKKFAVGSGSRVISI--------------CYFEQEN---DWWVCKHIKKPIRST 144
Query: 195 VYDISWSPTSTHLISGSVD 213
V + W P S L +GS D
Sbjct: 145 VLSLDWHPNSVLLAAGSCD 163
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 171 NLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLG-- 228
++ E++ NK W+ L+ H V I W+P S +++ D A +W + KG+
Sbjct: 33 HIYEKSGNK--WVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTL-KGRTWKPT 89
Query: 229 -ILTEHKKFVQGVAWDPKNQYVATLSSDRSL 258
++ + + V W P + A S R +
Sbjct: 90 LVILRINRAARCVRWAPNEKKFAVGSGSRVI 120
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 55/184 (29%)
Query: 80 HQKAVNVVRFSPN--GELLASGDDVGKEIWYLTERESGIANVEFASD-------LSRHQK 130
H +VN V+++P+ G +L GK ++ VEF + + H
Sbjct: 98 HSASVNSVQWAPHEYGPMLLVASSDGK-----------VSVVEFKENGTTSPIIIDAHAI 146
Query: 131 AVNVVRFSP-----NGEL--------LASGDDESTIIVWKQKTDQDLPEFPSSNLDEENV 177
VN ++P +GE +G ++ + +WK +D
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD---------------- 190
Query: 178 NKEHWIVTKILRGHLEDVYDISWSPT---STHLISGSVDNTAIMW--DVHKGKNLGILTE 232
+ +++ L GH + V D++WSPT +++ S S D T I+W D +G L +
Sbjct: 191 -AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLK 249
Query: 233 HKKF 236
+KF
Sbjct: 250 EEKF 253
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 184 VTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKG 224
+ +L H + + W+ TH+IS V+N I+W+V G
Sbjct: 141 LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG 181
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/232 (18%), Positives = 98/232 (42%), Gaps = 45/232 (19%)
Query: 84 VNVVRFSPNGELLASGDDVGK-EIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 142
V + +S +G + +G + G+ +W + + NV L+ H+ + V+++ +G
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLW---NKTGALLNV-----LNFHRAPIVSVKWNKDGT 162
Query: 143 LLASGDDESTIIVWKQKTDQ-----DLPEFPSSNLDEEN-------------VNKEHWIV 184
+ S D E+ I+W + +L E S+++ EN V+ + +++
Sbjct: 163 HIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVI 222
Query: 185 -----------------TKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNL 227
T L GH + + ++ T+ L+S S D T +W G +
Sbjct: 223 PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ 282
Query: 228 GILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPV 279
H + + +W ++ V + S D S+R +S++ +++ + +P+
Sbjct: 283 NCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQNTLLALSIVDGVPI 333
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 54/153 (35%), Gaps = 27/153 (17%)
Query: 76 DLSRHQKAVNVVRFSPNG-ELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNV 134
D + + P+G L+ G+ IW L I ++L+ A
Sbjct: 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK-----AELTSSAPACYA 146
Query: 135 VRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLED 194
+ SP+ ++ S + I VW + +F +GH +
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF---------------------QGHTDG 185
Query: 195 VYDISWSPTSTHLISGSVDNTAIMWDVHKGKNL 227
I S T L +G +DNT WD+ +G+ L
Sbjct: 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 67/187 (35%), Gaps = 41/187 (21%)
Query: 76 DLSRHQKAVNVVRFSPNGELLASG-DDVGKEIWYLTERESGIANVEFASDLSRHQKAVNV 134
D H + + P + SG DD+ ++W N H+ V
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN------NWALEQTFEGHEHFVMC 145
Query: 135 VRFSP-NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHW----------- 182
V F+P + ASG + T+ VW Q P F + E VN +
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWS--LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 183 ----IVTKI-----------LRGHLEDVYDISWSPTSTHLISGSVDNTAIMWD-----VH 222
+ KI L GH+ +V + PT +ISGS D T +W+ V
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Query: 223 KGKNLGI 229
K N+G+
Sbjct: 264 KTLNVGL 270
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 32/163 (19%)
Query: 124 DLSRHQKAV---NVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKE 180
+L H +V VV FS N L AS D TI +W+ D+ + F + D
Sbjct: 137 NLQAHNASVWDAKVVSFSENKFLTASAD--KTIKLWQN--DKVIKTFSGIHND------- 185
Query: 181 HWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGV 240
++R HL V D H IS S D + D H G L H+ FV +
Sbjct: 186 ------VVR-HLAVVDD-------GHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCI 231
Query: 241 AWDPKNQYVATLSSDRSLRTYSIQS---KKVISRACRSKLPVD 280
P N + + DR++R +S ++ K+VI+ S VD
Sbjct: 232 KLLP-NGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVD 273
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 66/187 (35%), Gaps = 41/187 (21%)
Query: 76 DLSRHQKAVNVVRFSPNGELLASG-DDVGKEIWYLTERESGIANVEFASDLSRHQKAVNV 134
D H + + P + SG DD+ ++W N H+ V
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN------NWALEQTFEGHEHFVMC 145
Query: 135 VRFSPNG-ELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHW----------- 182
V F+P ASG + T+ VW Q P F + E VN +
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWS--LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 183 ----IVTKI-----------LRGHLEDVYDISWSPTSTHLISGSVDNTAIMWD-----VH 222
+ KI L GH+ +V + PT +ISGS D T +W+ V
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Query: 223 KGKNLGI 229
K N+G+
Sbjct: 264 KTLNVGL 270
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 68 IANVEFASDLSRHQKAVNVVRFSPNGELLASGDD---VGKEIWYLTERESGIANVEFASD 124
+ N E + + ++ V+FSP G LLA D G Y TE I ++ +
Sbjct: 230 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH 289
Query: 125 LSR-------HQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQ 162
S+ H V + F+ +GE L S + + W KT +
Sbjct: 290 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 334
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 52 RLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGKEIWYLTE 111
R G IW + E G N + + + V V + +L + D E+W + E
Sbjct: 66 RTWGGSIWVFKDPE-GAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILE 124
Query: 112 RESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVW 156
+ES + N +FA H V + +G SG + ++ VW
Sbjct: 125 KESLLVN-KFAK--YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 68 IANVEFASDLSRHQKAVNVVRFSPNGELLASGDD---VGKEIWYLTERESGIANVEFASD 124
+ N E + + ++ V+FSP G LLA D G Y TE I ++ +
Sbjct: 220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH 279
Query: 125 LSR-------HQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQ 162
S+ H V + F+ +GE L S + + W KT +
Sbjct: 280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324
>pdb|4F6O|A Chain A, Crystal Structure Of The Yeast Metacaspase Yca1
Length = 350
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 193 EDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATL 252
E V I +S ++SGS DN V G+N G ++ F++ + P+ Y++ L
Sbjct: 262 ERVRQIKFSAADVVMLSGSKDNQTSADAVEDGQNTGAMSH--AFIKVMTLQPQQSYLSLL 319
Query: 253 SSDR 256
+ R
Sbjct: 320 QNMR 323
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 176 NVNKEHWIVTKILRGHLEDVYDISWSPT---STHLISGSVDNTAIMW--DVHKGKNLGIL 230
N + + +++ L GH + V D++WSPT ++ S S D T I+W D +G L
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTL 247
Query: 231 TEHKKF 236
+ +KF
Sbjct: 248 LKEEKF 253
>pdb|3LJK|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis.
pdb|3M5P|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With Fructose-6-Phosphate
Length = 543
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 207 LISGSVDNTAIMWDVHKGKNLGILT---EHKKFVQGVAWD 243
+I G+ +T I+ D +LG L EHK FVQGV WD
Sbjct: 456 VIPGNRPSTTILLDELSPYSLGALIALYEHKIFVQGVLWD 495
>pdb|3Q88|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With Ribose 1,5-Bisphosphate.
pdb|3Q7I|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With 6-Phosphogluconic Acid
Length = 543
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 207 LISGSVDNTAIMWDVHKGKNLGILT---EHKKFVQGVAWD 243
+I G+ +T I+ D +LG L EHK FVQGV WD
Sbjct: 456 VIPGNRPSTTILLDELSPYSLGALIALYEHKIFVQGVLWD 495
>pdb|2XWB|A Chain A, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|C Chain C, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 642
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 12 NRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTER 64
+R PV + LK E D+ R+V D VF +L ++L KIW + E+
Sbjct: 550 DRQPVPGQQMTLKIEGDHGARVVLVAVDKGVF--VLNKKNKLTQSKIWDVVEK 600
>pdb|3G6J|A Chain A, C3b In Complex With A C3b Specific Fab
pdb|3G6J|C Chain C, C3b In Complex With A C3b Specific Fab
Length = 644
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 12 NRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTER 64
+R PV + LK E D+ R+V D VF +L ++L KIW + E+
Sbjct: 550 DRQPVPGQQMTLKIEGDHGARVVLVAVDKGVF--VLNKKNKLTQSKIWDVVEK 600
>pdb|2WII|A Chain A, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|A Chain A, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|C Chain C, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|E Chain E, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|G Chain G, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L3O|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L3O|D Chain D, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L5N|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
pdb|3NMS|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement C3c
pdb|3OHX|A Chain A, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3OHX|D Chain D, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|2XWJ|A Chain A, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|C Chain C, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|E Chain E, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|G Chain G, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|3T4A|A Chain A, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
pdb|3T4A|D Chain D, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
Length = 645
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 12 NRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTER 64
+R PV + LK E D+ R+V D VF +L ++L KIW + E+
Sbjct: 550 DRQPVPGQQMTLKIEGDHGARVVLVAVDKGVF--VLNKKNKLTQSKIWDVVEK 600
>pdb|2A73|A Chain A, Human Complement Component C3
pdb|2A74|A Chain A, Human Complement Component C3c
pdb|2A74|D Chain D, Human Complement Component C3c
pdb|2QKI|A Chain A, Human C3c In Complex With The Inhibitor Compstatin
pdb|2QKI|D Chain D, Human C3c In Complex With The Inhibitor Compstatin
Length = 643
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 12 NRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTER 64
+R PV + LK E D+ R+V D VF +L ++L KIW + E+
Sbjct: 550 DRQPVPGQQMTLKIEGDHGARVVLVAVDKGVF--VLNKKNKLTQSKIWDVVEK 600
>pdb|2ICE|A Chain A, Crig Bound To C3c
pdb|2ICE|D Chain D, Crig Bound To C3c
pdb|2ICF|A Chain A, Crig Bound To C3b
Length = 642
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 12 NRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTER 64
+R PV + LK E D+ R+V D VF +L ++L KIW + E+
Sbjct: 550 DRQPVPGQQMTLKIEGDHGARVVLVAVDKGVF--VLNKKNKLTQSKIWDVVEK 600
>pdb|2HR0|A Chain A, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2I07|A Chain A, Human Complement Component C3b
Length = 645
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 12 NRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTER 64
+R PV + LK E D+ R+V D VF +L ++L KIW + E+
Sbjct: 550 DRQPVPGQQMTLKIEGDHGARVVLVAVDKGVF--VLNKKNKLTQSKIWDVVEK 600
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 22/146 (15%)
Query: 74 ASDLSRHQKAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVN 133
A S H K V V ++P + + + + +R G L R +A
Sbjct: 48 ARTFSDHDKIVTCVDWAPKSNRIVTCSQ-DRNAYVYEKRPDGTWKQTLV--LLRLNRAAT 104
Query: 134 VVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLE 193
VR+SPN + A G I V ++EN W V+K L+ L
Sbjct: 105 FVRWSPNEDKFAVGSGARVISV--------------CYFEQEN----DWWVSKHLKRPLR 146
Query: 194 D-VYDISWSPTSTHLISGSVDNTAIM 218
+ + W P + L +G D A +
Sbjct: 147 STILSLDWHPNNVLLAAGCADRKAYV 172
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 196 YDISWSPTSTHLISGSVDNTAIMW--DVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLS 253
Y+ +++ T ++ + N ++ D + K+ ++H K V V W PK+ + T S
Sbjct: 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS 74
Query: 254 SDRSLRTY 261
DR+ Y
Sbjct: 75 QDRNAYVY 82
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 27/198 (13%)
Query: 81 QKAVNVVRFSPNGELLASGDDVGKEIW----YLTERESGIANVEFASDLSRHQKAV-NVV 135
++ + R+ +G LL + W +L + N F S + + V ++
Sbjct: 30 ERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLT 89
Query: 136 RFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDV 195
G L+AS D + +W+ LDE E IV+K + +D+
Sbjct: 90 WVGERGILVAS--DSGAVELWE--------------LDE----NETLIVSKFCKYEHDDI 129
Query: 196 YD-ISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDP-KNQYVATLS 253
+S + T +SGS D +WD+ + L H V VA P K+ + S
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189
Query: 254 SDRSLRTYSIQSKKVISR 271
D + + + K S+
Sbjct: 190 EDNRILLWDTRCPKPASQ 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,059,085
Number of Sequences: 62578
Number of extensions: 886435
Number of successful extensions: 2639
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1941
Number of HSP's gapped (non-prelim): 414
length of query: 621
length of database: 14,973,337
effective HSP length: 105
effective length of query: 516
effective length of database: 8,402,647
effective search space: 4335765852
effective search space used: 4335765852
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)