Query psy15549
Match_columns 621
No_of_seqs 714 out of 3758
Neff 10.9
Searched_HMMs 29240
Date Sat Aug 17 00:08:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 2.3E-50 7.8E-55 432.7 41.1 417 6-483 52-609 (611)
2 1nr0_A Actin interacting prote 100.0 4.8E-48 1.6E-52 414.7 40.2 412 10-485 15-567 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 2.3E-46 7.8E-51 400.6 37.9 362 7-482 215-577 (577)
4 1vyh_C Platelet-activating fac 100.0 5.4E-45 1.8E-49 371.3 39.0 286 8-441 103-409 (410)
5 2ymu_A WD-40 repeat protein; u 100.0 3.5E-45 1.2E-49 391.4 38.7 381 7-501 174-561 (577)
6 3ow8_A WD repeat-containing pr 100.0 2.1E-44 7.3E-49 353.9 38.7 292 9-442 28-320 (321)
7 1got_B GT-beta; complex (GTP-b 100.0 2.5E-44 8.7E-49 357.0 39.3 291 7-440 49-340 (340)
8 2pbi_B Guanine nucleotide-bind 100.0 2E-43 6.7E-48 352.3 40.3 295 6-440 57-354 (354)
9 3iz6_a 40S ribosomal protein R 100.0 6.9E-44 2.4E-48 359.6 33.8 311 7-445 60-377 (380)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.3E-43 1.5E-47 348.8 37.3 321 7-450 9-342 (345)
11 1vyh_C Platelet-activating fac 100.0 6.8E-44 2.3E-48 363.2 32.0 307 75-483 102-409 (410)
12 3frx_A Guanine nucleotide-bind 100.0 1.4E-42 4.9E-47 341.0 39.9 294 6-444 10-318 (319)
13 2ynn_A Coatomer subunit beta'; 100.0 9.4E-43 3.2E-47 340.0 37.0 296 1-444 1-303 (304)
14 3ow8_A WD repeat-containing pr 100.0 5.5E-43 1.9E-47 343.9 32.5 288 76-483 27-319 (321)
15 3sfz_A APAF-1, apoptotic pepti 100.0 6E-43 2E-47 407.4 37.7 401 8-485 610-1158(1249)
16 4g56_B MGC81050 protein; prote 100.0 7.7E-43 2.6E-47 348.2 33.0 300 10-444 39-344 (357)
17 4gqb_B Methylosome protein 50; 100.0 2.5E-42 8.6E-47 341.6 35.4 302 10-446 27-334 (344)
18 2xzm_R RACK1; ribosome, transl 100.0 6.1E-42 2.1E-46 340.5 38.0 299 6-445 14-342 (343)
19 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-42 7.1E-47 384.1 35.9 426 8-488 12-608 (902)
20 2hes_X YDR267CP; beta-propelle 100.0 2.3E-41 7.9E-46 334.1 39.0 311 4-443 5-328 (330)
21 1pgu_A Actin interacting prote 100.0 7.7E-42 2.6E-46 368.4 38.3 406 6-484 56-613 (615)
22 1gxr_A ESG1, transducin-like e 100.0 2E-41 7E-46 336.1 37.8 327 12-442 8-336 (337)
23 1pgu_A Actin interacting prote 100.0 3.4E-42 1.2E-46 371.2 33.6 406 8-485 13-572 (615)
24 1got_B GT-beta; complex (GTP-b 100.0 6E-42 2E-46 340.0 32.4 292 73-482 47-340 (340)
25 3sfz_A APAF-1, apoptotic pepti 100.0 3.7E-42 1.3E-46 400.7 36.1 434 8-484 652-1248(1249)
26 2ynn_A Coatomer subunit beta'; 100.0 6.1E-42 2.1E-46 334.2 31.0 291 72-482 4-299 (304)
27 4gqb_B Methylosome protein 50; 100.0 4.3E-42 1.5E-46 339.9 29.8 300 78-487 27-333 (344)
28 4ery_A WD repeat-containing pr 100.0 3.2E-40 1.1E-44 323.8 41.7 290 8-442 18-311 (312)
29 4g56_B MGC81050 protein; prote 100.0 4.8E-42 1.6E-46 342.5 28.0 327 16-486 8-344 (357)
30 1erj_A Transcriptional repress 100.0 2E-40 6.9E-45 335.8 37.5 304 10-444 61-390 (393)
31 2pm9_A Protein WEB1, protein t 100.0 2.2E-41 7.4E-46 346.5 29.5 343 12-485 11-414 (416)
32 2oaj_A Protein SNI1; WD40 repe 100.0 2.5E-41 8.7E-46 375.4 31.9 414 9-483 54-659 (902)
33 4aow_A Guanine nucleotide-bind 100.0 1.2E-39 4.2E-44 323.8 40.8 295 8-445 33-339 (340)
34 2pbi_B Guanine nucleotide-bind 100.0 1.4E-40 4.8E-45 331.7 33.6 295 73-482 56-354 (354)
35 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-40 8.8E-45 328.8 32.1 314 72-486 6-336 (345)
36 3mkq_A Coatomer beta'-subunit; 100.0 1.8E-40 6.2E-45 369.8 34.7 372 1-482 1-420 (814)
37 1r5m_A SIR4-interacting protei 100.0 7.4E-41 2.5E-45 343.3 28.9 333 10-485 42-425 (425)
38 4e54_B DNA damage-binding prot 100.0 3E-40 1E-44 339.5 30.7 313 8-446 114-433 (435)
39 3zwl_B Eukaryotic translation 100.0 4.5E-39 1.5E-43 323.4 38.1 320 6-450 25-353 (369)
40 4ery_A WD repeat-containing pr 100.0 1.3E-39 4.4E-44 319.5 33.1 292 72-484 14-311 (312)
41 3dm0_A Maltose-binding peripla 100.0 2.6E-39 8.9E-44 352.8 38.6 296 7-442 376-692 (694)
42 3iz6_a 40S ribosomal protein R 100.0 1.1E-40 3.6E-45 336.3 25.5 300 73-486 58-376 (380)
43 3frx_A Guanine nucleotide-bind 100.0 2.5E-39 8.4E-44 318.0 32.3 293 72-484 8-316 (319)
44 3vl1_A 26S proteasome regulato 100.0 5.1E-40 1.7E-44 336.8 28.5 323 15-485 58-419 (420)
45 1k8k_C P40, ARP2/3 complex 41 100.0 5.5E-39 1.9E-43 323.4 34.0 327 6-445 1-363 (372)
46 1sq9_A Antiviral protein SKI8; 100.0 8.6E-39 2.9E-43 325.0 34.5 321 4-445 7-397 (397)
47 2xzm_R RACK1; ribosome, transl 100.0 2.1E-38 7.3E-43 314.9 36.2 294 72-484 12-339 (343)
48 1erj_A Transcriptional repress 100.0 3.9E-39 1.4E-43 326.4 30.0 303 79-485 62-389 (393)
49 2hes_X YDR267CP; beta-propelle 100.0 8.8E-39 3E-43 315.6 31.1 306 73-485 6-328 (330)
50 3ei3_B DNA damage-binding prot 100.0 2.4E-38 8.3E-43 320.0 34.8 306 7-443 67-382 (383)
51 2j04_B YDR362CP, TAU91; beta p 100.0 4.7E-39 1.6E-43 334.0 28.7 347 7-443 127-517 (524)
52 3dwl_C Actin-related protein 2 100.0 4E-39 1.4E-43 325.1 24.7 254 5-334 3-280 (377)
53 3mkq_A Coatomer beta'-subunit; 100.0 5.6E-38 1.9E-42 349.7 36.2 382 8-501 50-480 (814)
54 4h5i_A Guanine nucleotide-exch 100.0 2.1E-38 7.2E-43 317.0 28.9 300 12-444 13-344 (365)
55 1gxr_A ESG1, transducin-like e 100.0 2.1E-38 7.2E-43 314.3 27.6 325 80-483 8-335 (337)
56 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.1E-37 1.7E-41 316.8 38.9 321 5-443 110-442 (445)
57 3i2n_A WD repeat-containing pr 100.0 1.8E-37 6E-42 310.4 33.5 317 9-446 14-356 (357)
58 4a11_B DNA excision repair pro 100.0 1.6E-36 5.5E-41 309.3 39.6 339 6-484 36-404 (408)
59 3k26_A Polycomb protein EED; W 100.0 8.2E-38 2.8E-42 313.9 29.1 311 7-442 12-365 (366)
60 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-36 5.2E-41 297.6 36.8 291 6-451 11-304 (313)
61 3gre_A Serine/threonine-protei 100.0 1.3E-37 4.4E-42 320.6 29.7 226 10-277 60-304 (437)
62 4gga_A P55CDC, cell division c 100.0 1.2E-36 4.1E-41 311.2 35.3 292 15-454 107-406 (420)
63 3v7d_B Cell division control p 100.0 3.4E-36 1.2E-40 312.6 37.2 340 8-441 116-461 (464)
64 1r5m_A SIR4-interacting protei 100.0 1.8E-36 6E-41 310.7 33.0 300 12-442 107-424 (425)
65 4aez_A CDC20, WD repeat-contai 100.0 3E-36 1E-40 306.4 34.3 295 11-451 89-388 (401)
66 2pm9_A Protein WEB1, protein t 100.0 1.1E-37 3.6E-42 319.1 22.7 342 7-444 61-415 (416)
67 2pm7_B Protein transport prote 100.0 1.4E-35 4.6E-40 288.2 34.9 253 76-442 4-284 (297)
68 4aow_A Guanine nucleotide-bind 100.0 7.6E-36 2.6E-40 296.4 32.8 295 71-484 28-336 (340)
69 2j04_A TAU60, YPL007P, hypothe 100.0 7.4E-37 2.5E-41 308.3 25.5 305 12-503 14-344 (588)
70 3f3f_A Nucleoporin SEH1; struc 100.0 2.1E-35 7E-40 294.0 34.0 325 6-450 4-344 (351)
71 3zwl_B Eukaryotic translation 100.0 8E-36 2.7E-40 299.7 30.8 288 75-486 26-347 (369)
72 3vl1_A 26S proteasome regulato 100.0 1.5E-36 5.1E-41 311.0 25.7 305 82-485 57-365 (420)
73 2pm7_B Protein transport prote 100.0 2.3E-35 8E-40 286.5 32.5 255 7-334 3-284 (297)
74 3k26_A Polycomb protein EED; W 100.0 7.5E-37 2.6E-41 306.9 22.7 315 77-484 14-365 (366)
75 3ei3_B DNA damage-binding prot 100.0 3.6E-36 1.2E-40 304.1 27.1 293 71-485 63-382 (383)
76 1sq9_A Antiviral protein SKI8; 100.0 1.5E-36 5.2E-41 308.4 24.5 302 73-485 8-395 (397)
77 3dm0_A Maltose-binding peripla 100.0 5.4E-36 1.9E-40 326.6 30.2 293 73-484 374-692 (694)
78 3dw8_B Serine/threonine-protei 100.0 2.9E-35 9.9E-40 304.0 33.3 276 11-334 26-372 (447)
79 1k8k_C P40, ARP2/3 complex 41 100.0 1.3E-35 4.5E-40 298.7 29.6 308 77-485 4-361 (372)
80 1yfq_A Cell cycle arrest prote 100.0 9.7E-35 3.3E-39 288.7 34.3 286 7-435 5-315 (342)
81 4ggc_A P55CDC, cell division c 100.0 1.4E-34 4.7E-39 284.4 34.4 281 16-444 28-316 (318)
82 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.2E-35 1.1E-39 303.4 30.8 319 75-485 112-442 (445)
83 3odt_A Protein DOA1; ubiquitin 100.0 5.6E-35 1.9E-39 286.4 31.1 287 72-486 9-297 (313)
84 3bg1_A Protein SEC13 homolog; 100.0 1.5E-35 5.1E-40 290.6 26.3 253 76-442 8-292 (316)
85 3v7d_B Cell division control p 100.0 3E-35 1E-39 305.5 29.5 317 75-481 115-459 (464)
86 3i2n_A WD repeat-containing pr 100.0 1.2E-35 4E-40 297.1 25.1 290 76-486 13-354 (357)
87 4e54_B DNA damage-binding prot 100.0 8.3E-36 2.8E-40 306.4 24.2 295 75-486 113-431 (435)
88 3gre_A Serine/threonine-protei 100.0 4.6E-36 1.6E-40 309.0 21.5 326 75-482 56-437 (437)
89 3dwl_C Actin-related protein 2 100.0 5E-36 1.7E-40 302.4 18.9 265 77-442 7-280 (377)
90 1p22_A F-BOX/WD-repeat protein 100.0 2.9E-34 1E-38 295.1 32.0 280 11-449 131-420 (435)
91 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-34 3.8E-39 295.1 28.0 297 15-446 36-345 (402)
92 3bg1_A Protein SEC13 homolog; 100.0 5.1E-35 1.7E-39 286.8 24.0 258 6-334 6-292 (316)
93 2j04_B YDR362CP, TAU91; beta p 100.0 6.7E-36 2.3E-40 310.3 18.1 340 80-486 132-518 (524)
94 4h5i_A Guanine nucleotide-exch 100.0 9.3E-35 3.2E-39 290.6 21.9 300 81-486 14-344 (365)
95 4gga_A P55CDC, cell division c 100.0 1E-33 3.6E-38 289.4 29.8 286 83-485 107-395 (420)
96 3jrp_A Fusion protein of prote 100.0 2.3E-33 7.7E-38 282.9 31.1 258 74-444 4-288 (379)
97 1yfq_A Cell cycle arrest prote 100.0 3.3E-34 1.1E-38 284.8 24.6 282 77-482 7-321 (342)
98 4aez_A CDC20, WD repeat-contai 100.0 2.2E-33 7.5E-38 285.3 29.0 286 78-486 88-381 (401)
99 3mmy_A MRNA export factor; mRN 100.0 9.6E-33 3.3E-37 277.1 31.7 300 6-443 32-346 (368)
100 3jrp_A Fusion protein of prote 100.0 1.3E-32 4.4E-37 277.4 31.7 259 6-335 4-287 (379)
101 4a11_B DNA excision repair pro 100.0 3.4E-33 1.2E-37 284.7 27.4 324 56-486 25-366 (408)
102 4ggc_A P55CDC, cell division c 100.0 1.4E-32 4.7E-37 270.1 29.8 285 84-485 28-315 (318)
103 3dw8_B Serine/threonine-protei 100.0 3.8E-33 1.3E-37 288.1 26.7 285 79-447 26-377 (447)
104 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.5E-32 2.9E-36 277.9 35.1 229 14-273 5-279 (450)
105 3mmy_A MRNA export factor; mRN 100.0 1.7E-32 5.8E-37 275.2 28.7 291 74-482 32-343 (368)
106 2xyi_A Probable histone-bindin 100.0 8.6E-32 2.9E-36 275.9 33.7 325 13-446 45-413 (430)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 2.3E-32 7.8E-37 278.0 28.9 296 83-486 36-343 (402)
108 4gq1_A NUP37; propeller, trans 100.0 3.3E-32 1.1E-36 275.2 27.7 334 6-442 8-388 (393)
109 1p22_A F-BOX/WD-repeat protein 100.0 6.3E-32 2.1E-36 277.7 29.8 273 78-486 130-415 (435)
110 3jro_A Fusion protein of prote 100.0 4.6E-32 1.6E-36 297.1 29.2 257 7-334 3-284 (753)
111 2j04_A TAU60, YPL007P, hypothe 100.0 2.8E-32 9.6E-37 275.1 19.7 267 78-484 12-296 (588)
112 3vu4_A KMHSV2; beta-propeller 100.0 1.8E-30 6E-35 258.7 32.5 303 10-447 16-340 (355)
113 3bws_A Protein LP49; two-domai 100.0 6.9E-30 2.4E-34 262.5 36.9 343 12-443 59-432 (433)
114 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4E-31 1.4E-35 272.9 26.8 270 82-466 5-366 (450)
115 2xyi_A Probable histone-bindin 100.0 1.4E-30 4.7E-35 267.0 30.3 277 8-335 123-410 (430)
116 3jro_A Fusion protein of prote 100.0 2.5E-31 8.6E-36 291.3 26.2 257 75-445 3-287 (753)
117 1l0q_A Surface layer protein; 100.0 6.2E-30 2.1E-34 259.1 33.9 278 31-454 3-286 (391)
118 3f3f_A Nucleoporin SEH1; struc 100.0 8.8E-31 3E-35 260.5 26.9 268 123-485 5-337 (351)
119 3lrv_A PRE-mRNA-splicing facto 100.0 8.7E-31 3E-35 260.1 26.4 280 18-444 41-334 (343)
120 3vu4_A KMHSV2; beta-propeller 100.0 8.2E-31 2.8E-35 261.1 23.6 303 58-484 3-335 (355)
121 2w18_A PALB2, fancn, partner a 100.0 1.2E-28 4.1E-33 233.5 26.9 262 58-441 67-355 (356)
122 3bws_A Protein LP49; two-domai 100.0 8.3E-29 2.9E-33 254.4 27.6 333 82-485 61-432 (433)
123 3lrv_A PRE-mRNA-splicing facto 100.0 9.9E-30 3.4E-34 252.5 20.0 278 86-483 41-331 (343)
124 4gq1_A NUP37; propeller, trans 100.0 3.6E-29 1.2E-33 253.0 20.6 262 15-333 91-387 (393)
125 2w18_A PALB2, fancn, partner a 100.0 3.6E-28 1.2E-32 230.2 23.9 299 83-483 41-355 (356)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.7E-28 1.6E-32 246.2 26.2 305 14-467 63-410 (415)
127 1nir_A Nitrite reductase; hemo 100.0 5.2E-27 1.8E-31 245.7 30.9 348 20-454 144-525 (543)
128 1l0q_A Surface layer protein; 100.0 2.8E-26 9.5E-31 232.2 34.4 223 13-317 31-261 (391)
129 1k32_A Tricorn protease; prote 100.0 1.8E-27 6.2E-32 270.7 28.1 371 6-482 45-499 (1045)
130 2ecf_A Dipeptidyl peptidase IV 100.0 2.4E-26 8.1E-31 253.0 31.4 329 13-444 36-460 (741)
131 1xfd_A DIP, dipeptidyl aminope 99.9 3.6E-26 1.2E-30 250.9 25.9 323 14-471 17-426 (723)
132 1nir_A Nitrite reductase; hemo 99.9 4.4E-26 1.5E-30 238.6 24.0 336 88-502 144-532 (543)
133 1k32_A Tricorn protease; prote 99.9 6.2E-25 2.1E-29 249.9 31.2 329 15-445 246-639 (1045)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.1E-24 1.1E-28 218.0 29.2 227 9-318 113-372 (415)
135 2ecf_A Dipeptidyl peptidase IV 99.9 9.4E-25 3.2E-29 240.2 25.6 329 81-487 36-461 (741)
136 2z3z_A Dipeptidyl aminopeptida 99.9 8.7E-24 3E-28 231.2 31.5 299 82-445 82-437 (706)
137 3u4y_A Uncharacterized protein 99.9 1.6E-23 5.5E-28 206.7 29.0 280 19-446 3-307 (331)
138 2ojh_A Uncharacterized protein 99.9 1.7E-23 5.9E-28 202.5 26.2 267 34-434 16-293 (297)
139 3vgz_A Uncharacterized protein 99.9 1.2E-22 4.2E-27 202.2 31.1 272 12-434 39-335 (353)
140 1ri6_A Putative isomerase YBHE 99.9 1.5E-22 5.2E-27 200.5 30.8 281 32-442 7-307 (343)
141 1xfd_A DIP, dipeptidyl aminope 99.9 6.1E-24 2.1E-28 233.1 16.5 292 83-484 18-392 (723)
142 1pby_B Quinohemoprotein amine 99.9 9.3E-23 3.2E-27 201.5 23.1 274 32-454 3-321 (337)
143 3u4y_A Uncharacterized protein 99.9 3.3E-22 1.1E-26 197.2 26.0 286 87-491 3-310 (331)
144 3hfq_A Uncharacterized protein 99.9 3.2E-21 1.1E-25 191.5 31.5 259 79-447 37-323 (347)
145 3vgz_A Uncharacterized protein 99.9 7.3E-22 2.5E-26 196.6 26.8 271 81-472 40-331 (353)
146 2ojh_A Uncharacterized protein 99.9 8E-22 2.8E-26 190.7 25.3 237 7-318 35-290 (297)
147 2z3z_A Dipeptidyl aminopeptida 99.9 8.2E-22 2.8E-26 215.5 28.1 319 14-441 82-474 (706)
148 1z68_A Fibroblast activation p 99.9 3.2E-22 1.1E-26 219.1 23.6 339 17-450 19-450 (719)
149 3scy_A Hypothetical bacterial 99.9 3.5E-20 1.2E-24 185.1 35.4 267 80-447 48-343 (361)
150 3o4h_A Acylamino-acid-releasin 99.9 7.3E-22 2.5E-26 210.6 24.1 196 12-269 20-231 (582)
151 1ri6_A Putative isomerase YBHE 99.9 1.2E-20 4.1E-25 186.8 30.3 240 10-318 34-295 (343)
152 2oit_A Nucleoporin 214KDA; NH2 99.9 1E-20 3.4E-25 192.7 29.0 211 81-318 36-259 (434)
153 2oit_A Nucleoporin 214KDA; NH2 99.9 1.2E-20 4E-25 192.2 28.9 212 13-266 36-279 (434)
154 1jmx_B Amine dehydrogenase; ox 99.9 1.9E-20 6.4E-25 186.0 27.2 286 17-453 3-335 (349)
155 1pby_B Quinohemoprotein amine 99.9 5E-21 1.7E-25 189.0 19.6 293 94-491 2-317 (337)
156 3o4h_A Acylamino-acid-releasin 99.9 3.3E-21 1.1E-25 205.5 19.1 269 81-485 21-315 (582)
157 3pe7_A Oligogalacturonate lyas 99.9 1.6E-20 5.6E-25 189.5 22.9 289 19-442 41-381 (388)
158 3scy_A Hypothetical bacterial 99.9 1.1E-18 3.7E-23 174.2 34.9 244 12-318 48-324 (361)
159 4a5s_A Dipeptidyl peptidase 4 99.9 1.5E-19 5.1E-24 198.0 29.6 340 13-447 16-453 (740)
160 1z68_A Fibroblast activation p 99.9 9E-21 3.1E-25 207.6 19.3 329 86-483 20-441 (719)
161 3hfq_A Uncharacterized protein 99.9 8E-19 2.7E-23 174.1 31.4 238 12-318 38-304 (347)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 2E-18 6.8E-23 172.4 29.4 260 81-444 39-342 (365)
163 3azo_A Aminopeptidase; POP fam 99.8 5.9E-19 2E-23 191.3 26.4 208 8-269 18-278 (662)
164 3pe7_A Oligogalacturonate lyas 99.8 8.7E-19 3E-23 176.8 22.6 289 77-482 26-379 (388)
165 1jmx_B Amine dehydrogenase; ox 99.8 1.5E-18 5.1E-23 172.2 19.4 294 86-485 4-325 (349)
166 4a5s_A Dipeptidyl peptidase 4 99.8 2.4E-18 8.1E-23 188.4 22.0 151 82-263 17-200 (740)
167 3c5m_A Oligogalacturonate lyas 99.8 1.6E-18 5.6E-23 175.2 18.1 291 15-442 37-381 (396)
168 3fvz_A Peptidyl-glycine alpha- 99.8 1.2E-16 4E-21 156.9 30.6 258 81-443 23-322 (329)
169 2oiz_A Aromatic amine dehydrog 99.8 1.9E-17 6.4E-22 164.5 24.3 299 101-467 30-360 (361)
170 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.6E-17 1.2E-21 163.2 23.8 250 13-334 39-340 (365)
171 3c5m_A Oligogalacturonate lyas 99.8 1.1E-17 3.8E-22 169.1 16.6 269 82-472 36-368 (396)
172 3azo_A Aminopeptidase; POP fam 99.7 4.1E-17 1.4E-21 176.8 21.0 268 76-467 18-347 (662)
173 1q7f_A NHL, brain tumor CG1071 99.7 4.8E-15 1.6E-19 142.4 31.2 242 78-444 26-281 (286)
174 2dg1_A DRP35, lactonase; beta 99.7 2.9E-15 9.8E-20 147.5 29.3 194 14-265 6-213 (333)
175 2gop_A Trilobed protease; beta 99.7 1.2E-15 4.2E-20 151.1 26.3 259 14-445 15-332 (347)
176 3fvz_A Peptidyl-glycine alpha- 99.7 3.3E-15 1.1E-19 146.5 25.3 268 13-335 23-322 (329)
177 1qks_A Cytochrome CD1 nitrite 99.7 6E-14 2E-18 146.2 35.1 340 32-453 169-548 (567)
178 2oiz_A Aromatic amine dehydrog 99.7 3.1E-15 1.1E-19 148.4 23.6 288 58-425 35-360 (361)
179 2xdw_A Prolyl endopeptidase; a 99.7 1.3E-14 4.3E-19 158.2 30.2 249 79-445 122-416 (710)
180 2z2n_A Virginiamycin B lyase; 99.7 3.5E-13 1.2E-17 130.1 37.4 283 12-445 13-297 (299)
181 1q7f_A NHL, brain tumor CG1071 99.7 2.1E-14 7.1E-19 137.9 26.8 241 14-334 30-279 (286)
182 2gop_A Trilobed protease; beta 99.7 1.8E-15 6.3E-20 149.8 18.8 247 82-464 15-311 (347)
183 2dg1_A DRP35, lactonase; beta 99.7 3.7E-15 1.3E-19 146.7 20.4 263 82-470 6-295 (333)
184 2bkl_A Prolyl endopeptidase; m 99.7 1E-14 3.6E-19 158.3 25.2 285 89-487 75-399 (695)
185 2xdw_A Prolyl endopeptidase; a 99.7 1E-14 3.5E-19 158.9 24.2 284 91-486 81-415 (710)
186 2bkl_A Prolyl endopeptidase; m 99.6 7.4E-15 2.5E-19 159.5 21.9 163 78-267 117-306 (695)
187 1rwi_B Serine/threonine-protei 99.6 9.7E-14 3.3E-18 131.9 26.1 241 83-446 25-267 (270)
188 3e5z_A Putative gluconolactona 99.6 1.1E-13 3.8E-18 133.6 25.9 242 77-446 23-289 (296)
189 3e5z_A Putative gluconolactona 99.6 1.9E-13 6.6E-18 131.8 25.6 230 7-318 21-275 (296)
190 3dsm_A Uncharacterized protein 99.6 1.2E-13 4.1E-18 135.2 23.9 274 101-492 16-309 (328)
191 1yr2_A Prolyl oligopeptidase; 99.6 8.7E-14 3E-18 152.2 25.2 161 79-266 160-351 (741)
192 3dsm_A Uncharacterized protein 99.6 8.3E-14 2.8E-18 136.3 21.3 247 82-451 44-309 (328)
193 2mad_H Methylamine dehydrogena 99.6 3.8E-12 1.3E-16 126.2 32.9 295 19-450 26-357 (373)
194 2z2n_A Virginiamycin B lyase; 99.6 1.9E-12 6.4E-17 124.9 30.1 269 78-471 11-282 (299)
195 3no2_A Uncharacterized protein 99.6 4.8E-13 1.7E-17 126.9 24.8 222 32-318 7-231 (276)
196 1rwi_B Serine/threonine-protei 99.6 3.4E-13 1.2E-17 128.1 23.9 237 15-334 25-263 (270)
197 1yr2_A Prolyl oligopeptidase; 99.6 1.2E-13 4.1E-18 151.1 22.7 285 89-487 114-443 (741)
198 2qc5_A Streptogramin B lactona 99.6 2E-11 6.8E-16 117.7 34.6 199 13-267 19-219 (300)
199 3no2_A Uncharacterized protein 99.5 1.9E-12 6.4E-17 122.8 25.1 231 92-449 4-258 (276)
200 1qks_A Cytochrome CD1 nitrite 99.5 3.1E-11 1.1E-15 125.8 35.3 300 14-408 197-546 (567)
201 3sjl_D Methylamine dehydrogena 99.5 6.4E-12 2.2E-16 122.6 27.1 302 87-457 38-377 (386)
202 1xip_A Nucleoporin NUP159; bet 99.5 4.7E-13 1.6E-17 131.2 17.1 179 15-253 39-232 (388)
203 3c75_H MADH, methylamine dehyd 99.5 1.2E-11 4.1E-16 123.0 26.7 291 91-450 82-409 (426)
204 2qc5_A Streptogramin B lactona 99.5 6.5E-11 2.2E-15 114.1 31.0 243 80-446 18-262 (300)
205 1xip_A Nucleoporin NUP159; bet 99.5 1.5E-12 5.1E-17 127.7 19.2 188 83-318 39-232 (388)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.1E-11 3.7E-16 120.6 24.6 244 12-333 16-297 (314)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 5.6E-11 1.9E-15 115.5 28.0 247 81-443 17-299 (314)
208 3g4e_A Regucalcin; six bladed 99.4 7.4E-11 2.5E-15 113.6 26.9 232 10-318 9-260 (297)
209 2mad_H Methylamine dehydrogena 99.4 1.6E-10 5.3E-15 114.5 25.4 275 136-485 27-350 (373)
210 3hrp_A Uncharacterized protein 99.4 5.3E-10 1.8E-14 112.4 28.6 158 82-266 131-299 (409)
211 2qe8_A Uncharacterized protein 99.3 3.7E-11 1.3E-15 118.3 19.3 284 82-436 17-314 (343)
212 3g4e_A Regucalcin; six bladed 99.3 3.6E-10 1.2E-14 108.7 25.6 230 130-431 13-260 (297)
213 3dr2_A Exported gluconolactona 99.3 2.9E-10 9.9E-15 109.9 24.8 161 77-267 40-226 (305)
214 3sjl_D Methylamine dehydrogena 99.3 6.6E-11 2.3E-15 115.5 20.0 278 15-423 34-384 (386)
215 2ghs_A AGR_C_1268P; regucalcin 99.3 6.1E-10 2.1E-14 108.6 27.1 225 15-318 50-290 (326)
216 3iuj_A Prolyl endopeptidase; h 99.3 9.5E-11 3.3E-15 126.8 23.0 245 79-446 126-408 (693)
217 3iuj_A Prolyl endopeptidase; h 99.3 2.4E-10 8.1E-15 123.8 24.9 202 12-267 127-361 (693)
218 3hrp_A Uncharacterized protein 99.3 4.2E-10 1.4E-14 113.2 24.2 243 15-318 132-398 (409)
219 2ece_A 462AA long hypothetical 99.3 3.8E-09 1.3E-13 103.6 28.9 158 88-267 88-291 (462)
220 2ghs_A AGR_C_1268P; regucalcin 99.3 4.4E-09 1.5E-13 102.5 29.3 148 84-264 51-209 (326)
221 3dr2_A Exported gluconolactona 99.3 1.3E-09 4.4E-14 105.3 24.1 230 6-318 37-295 (305)
222 1fwx_A Nitrous oxide reductase 99.3 1.7E-10 5.9E-15 117.2 18.4 214 23-267 8-310 (595)
223 2qe8_A Uncharacterized protein 99.2 2.2E-09 7.4E-14 105.5 22.1 260 14-318 17-309 (343)
224 3c75_H MADH, methylamine dehyd 99.2 1.7E-09 5.9E-14 107.6 20.9 202 86-318 122-389 (426)
225 1mda_H Methylamine dehydrogena 99.1 1.4E-09 4.9E-14 106.4 18.4 274 103-454 47-357 (368)
226 1yiq_A Quinohemoprotein alcoho 99.1 9.3E-10 3.2E-14 118.2 18.6 390 32-471 72-534 (689)
227 3hxj_A Pyrrolo-quinoline quino 99.1 8.2E-09 2.8E-13 100.8 21.6 301 18-443 24-324 (330)
228 2ece_A 462AA long hypothetical 99.1 1.2E-08 4E-13 100.2 21.0 254 9-318 72-399 (462)
229 3q7m_A Lipoprotein YFGL, BAMB; 99.1 9.2E-08 3.2E-12 95.3 28.3 309 32-440 55-375 (376)
230 1kb0_A Quinohemoprotein alcoho 99.0 1.5E-08 5.1E-13 108.7 21.4 388 32-470 79-535 (677)
231 1kb0_A Quinohemoprotein alcoho 99.0 4.1E-08 1.4E-12 105.2 24.8 64 380-443 487-567 (677)
232 1yiq_A Quinohemoprotein alcoho 99.0 1E-07 3.6E-12 102.3 27.8 51 380-430 485-536 (689)
233 1mda_H Methylamine dehydrogena 99.0 1.7E-08 5.7E-13 98.8 18.3 213 58-318 50-332 (368)
234 2hz6_A Endoplasmic reticulum t 99.0 6E-11 2E-15 117.7 0.3 188 140-451 8-200 (369)
235 1npe_A Nidogen, entactin; glyc 99.0 1.8E-06 6E-11 81.3 30.4 156 82-266 36-199 (267)
236 2hz6_A Endoplasmic reticulum t 98.9 5.6E-10 1.9E-14 110.8 5.1 147 92-271 8-155 (369)
237 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1.4E-07 4.6E-12 94.0 21.4 240 140-452 102-346 (376)
238 1fwx_A Nitrous oxide reductase 98.9 3.2E-08 1.1E-12 100.7 16.5 95 140-256 100-216 (595)
239 4a2l_A BT_4663, two-component 98.9 2.8E-06 9.6E-11 93.6 33.0 335 14-446 88-439 (795)
240 1npe_A Nidogen, entactin; glyc 98.9 1.5E-06 5.2E-11 81.7 26.6 150 93-265 1-155 (267)
241 3hxj_A Pyrrolo-quinoline quino 98.8 5.5E-08 1.9E-12 94.9 15.6 270 86-453 24-293 (330)
242 2iwa_A Glutamine cyclotransfer 98.8 1.2E-06 4E-11 80.8 22.7 201 131-444 22-238 (266)
243 4a2l_A BT_4663, two-component 98.8 7.2E-05 2.5E-09 82.3 40.3 343 14-446 263-617 (795)
244 1kv9_A Type II quinohemoprotei 98.7 2.2E-05 7.6E-10 84.0 30.6 52 380-431 468-520 (668)
245 1kv9_A Type II quinohemoprotei 98.6 1.2E-06 4.1E-11 93.8 20.1 363 32-454 68-499 (668)
246 3nol_A Glutamine cyclotransfer 98.6 1.6E-06 5.6E-11 78.8 17.7 114 132-273 45-163 (262)
247 2iwa_A Glutamine cyclotransfer 98.6 1.8E-06 6.3E-11 79.5 18.2 198 16-266 23-238 (266)
248 3nok_A Glutaminyl cyclase; bet 98.6 5E-06 1.7E-10 75.6 19.7 117 131-273 56-172 (268)
249 3v9f_A Two-component system se 98.6 0.00048 1.6E-08 75.5 38.6 299 82-446 211-527 (781)
250 2p4o_A Hypothetical protein; p 98.6 0.00017 5.9E-09 69.0 30.7 153 82-265 32-198 (306)
251 1w6s_A Methanol dehydrogenase 98.5 6.3E-05 2.2E-09 78.7 28.9 51 380-430 483-534 (599)
252 2ad6_A Methanol dehydrogenase 98.5 4.6E-05 1.6E-09 79.8 27.1 49 380-428 474-522 (571)
253 2fp8_A Strictosidine synthase; 98.5 1.2E-05 4.2E-10 77.8 20.7 220 15-272 20-275 (322)
254 2fp8_A Strictosidine synthase; 98.5 2E-05 7E-10 76.2 22.2 255 131-443 20-313 (322)
255 3mbr_X Glutamine cyclotransfer 98.5 1.5E-05 5.1E-10 71.9 19.2 118 130-273 21-141 (243)
256 2xbg_A YCF48-like protein; pho 98.5 0.00086 3E-08 64.7 33.3 194 13-262 35-231 (327)
257 2xe4_A Oligopeptidase B; hydro 98.4 2.1E-05 7.2E-10 85.6 23.5 157 79-264 170-353 (751)
258 3v9f_A Two-component system se 98.4 0.00082 2.8E-08 73.7 36.4 300 82-447 163-482 (781)
259 1k3i_A Galactose oxidase precu 98.4 2.5E-05 8.7E-10 83.7 23.4 75 82-162 243-325 (656)
260 1w6s_A Methanol dehydrogenase 98.4 5.5E-05 1.9E-09 79.1 24.5 217 197-455 245-515 (599)
261 3nol_A Glutamine cyclotransfer 98.4 8.2E-06 2.8E-10 74.2 15.6 188 11-254 38-244 (262)
262 2ad6_A Methanol dehydrogenase 98.4 3.2E-05 1.1E-09 80.9 22.5 220 197-454 239-505 (571)
263 3v64_C Agrin; beta propeller, 98.4 0.00038 1.3E-08 67.9 28.7 153 83-265 35-191 (349)
264 3qqz_A Putative uncharacterize 98.4 0.00027 9.2E-09 64.7 25.0 212 13-263 26-251 (255)
265 1ijq_A LDL receptor, low-densi 98.4 0.00081 2.8E-08 64.6 29.8 147 94-265 2-152 (316)
266 3v65_B Low-density lipoprotein 98.3 0.0003 1E-08 69.7 26.8 152 84-265 79-234 (386)
267 2p4o_A Hypothetical protein; p 98.3 0.0003 1E-08 67.4 25.9 232 14-318 32-276 (306)
268 3nok_A Glutaminyl cyclase; bet 98.3 3.4E-05 1.2E-09 70.1 17.3 181 16-254 57-254 (268)
269 1flg_A Protein (quinoprotein e 98.3 0.00016 5.6E-09 75.7 25.1 91 389-481 464-557 (582)
270 1flg_A Protein (quinoprotein e 98.3 0.00037 1.3E-08 73.0 27.4 51 380-430 496-547 (582)
271 3qqz_A Putative uncharacterize 98.3 0.00028 9.7E-09 64.5 22.7 214 186-440 20-250 (255)
272 1k3i_A Galactose oxidase precu 98.3 4.5E-05 1.6E-09 81.7 20.3 116 134-268 190-326 (656)
273 3p5b_L Low density lipoprotein 98.2 0.0016 5.5E-08 64.7 29.0 177 94-318 84-264 (400)
274 4a0p_A LRP6, LRP-6, low-densit 98.2 0.0096 3.3E-07 62.8 37.0 201 15-272 38-244 (628)
275 3mbr_X Glutamine cyclotransfer 98.2 0.00015 5.1E-09 65.4 18.8 188 11-254 16-223 (243)
276 2xe4_A Oligopeptidase B; hydro 98.2 0.00015 5E-09 78.9 22.6 198 15-263 175-398 (751)
277 3s94_A LRP-6, low-density lipo 98.2 0.0039 1.3E-07 65.7 31.9 161 82-272 84-250 (619)
278 3tc9_A Hypothetical hydrolase; 98.2 0.00027 9.3E-09 71.1 22.3 153 131-333 138-299 (430)
279 3sov_A LRP-6, low-density lipo 98.1 0.0014 4.8E-08 62.8 25.8 146 94-265 5-154 (318)
280 3v64_C Agrin; beta propeller, 98.1 0.0021 7.2E-08 62.6 26.2 162 82-272 116-282 (349)
281 4hw6_A Hypothetical protein, I 98.1 0.00088 3E-08 67.3 24.0 143 131-318 140-291 (433)
282 3v65_B Low-density lipoprotein 98.0 0.0015 5E-08 64.7 23.9 161 83-272 160-325 (386)
283 2xbg_A YCF48-like protein; pho 98.0 0.0035 1.2E-07 60.4 25.9 156 81-267 121-280 (327)
284 3tc9_A Hypothetical hydrolase; 97.9 0.0019 6.6E-08 64.8 23.1 155 15-222 138-300 (430)
285 1ijq_A LDL receptor, low-densi 97.9 0.01 3.4E-07 56.8 27.3 206 14-272 30-245 (316)
286 3m0c_C LDL receptor, low-densi 97.9 0.01 3.6E-07 64.0 28.7 148 94-266 396-547 (791)
287 3sov_A LRP-6, low-density lipo 97.9 0.0088 3E-07 57.2 25.6 205 15-272 36-245 (318)
288 4hw6_A Hypothetical protein, I 97.8 0.0031 1.1E-07 63.3 22.9 164 80-268 180-376 (433)
289 1n7d_A LDL receptor, low-densi 97.8 0.00012 4.2E-09 78.5 13.2 118 130-264 406-527 (699)
290 3amr_A 3-phytase; beta-propell 97.8 0.0024 8.1E-08 60.7 20.1 99 140-263 39-160 (355)
291 3p5b_L Low density lipoprotein 97.8 0.021 7.1E-07 56.6 28.0 163 81-272 158-327 (400)
292 3kya_A Putative phosphatase; s 97.7 0.034 1.2E-06 56.0 27.4 161 83-264 140-340 (496)
293 3a9g_A Putative uncharacterize 97.7 0.03 1E-06 54.4 26.5 105 130-253 29-153 (354)
294 4a0p_A LRP6, LRP-6, low-densit 97.6 0.084 2.9E-06 55.6 30.2 174 94-318 7-184 (628)
295 2xzh_A Clathrin heavy chain 1; 97.6 0.036 1.2E-06 51.7 23.5 226 19-270 72-337 (365)
296 3amr_A 3-phytase; beta-propell 97.5 0.01 3.4E-07 56.4 19.8 174 82-273 68-272 (355)
297 2p9w_A MAL S 1 allergenic prot 97.5 0.0055 1.9E-07 57.7 17.8 177 190-442 10-214 (334)
298 3kya_A Putative phosphatase; s 97.5 0.026 8.9E-07 56.8 23.8 222 15-273 140-416 (496)
299 2ism_A Putative oxidoreductase 97.5 0.027 9.3E-07 54.7 23.5 104 131-253 32-153 (352)
300 3m0c_C LDL receptor, low-densi 97.5 0.039 1.3E-06 59.6 26.3 162 81-272 470-639 (791)
301 2ism_A Putative oxidoreductase 97.4 0.032 1.1E-06 54.2 23.2 108 15-148 32-153 (352)
302 3sre_A PON1, serum paraoxonase 97.4 0.037 1.3E-06 53.2 22.7 156 81-262 111-295 (355)
303 1n7d_A LDL receptor, low-densi 97.4 0.0013 4.6E-08 70.4 13.7 162 83-273 454-622 (699)
304 1bpo_A Protein (clathrin); cla 97.4 0.11 3.8E-06 50.5 25.5 227 19-271 71-337 (494)
305 2xzh_A Clathrin heavy chain 1; 97.4 0.086 3E-06 49.2 26.6 246 87-448 72-337 (365)
306 3a9g_A Putative uncharacterize 97.4 0.1 3.5E-06 50.6 26.0 111 14-148 29-153 (354)
307 2p9w_A MAL S 1 allergenic prot 97.4 0.008 2.7E-07 56.6 16.7 156 83-264 14-214 (334)
308 3s94_A LRP-6, low-density lipo 97.4 0.089 3.1E-06 55.3 26.7 146 94-265 10-159 (619)
309 2g8s_A Glucose/sorbosone dehyd 97.3 0.13 4.5E-06 49.8 26.1 61 380-441 288-350 (353)
310 2g8s_A Glucose/sorbosone dehyd 97.3 0.051 1.7E-06 52.8 22.8 114 15-148 19-148 (353)
311 3sre_A PON1, serum paraoxonase 97.3 0.021 7E-07 55.1 19.1 194 83-318 51-285 (355)
312 3pbp_A Nucleoporin NUP82; beta 97.2 0.026 9E-07 54.8 18.9 163 89-261 28-208 (452)
313 1bpo_A Protein (clathrin); cla 97.2 0.19 6.4E-06 48.9 27.1 250 86-449 70-337 (494)
314 3das_A Putative oxidoreductase 97.1 0.21 7.2E-06 47.8 26.8 111 129-254 31-159 (347)
315 3pbp_A Nucleoporin NUP82; beta 97.1 0.044 1.5E-06 53.2 19.0 124 83-218 67-207 (452)
316 1cru_A Protein (soluble quinop 96.9 0.43 1.5E-05 47.9 29.5 110 130-254 27-163 (454)
317 3das_A Putative oxidoreductase 96.9 0.33 1.1E-05 46.4 27.5 118 8-148 26-158 (347)
318 3ei3_A DNA damage-binding prot 96.7 1.3 4.3E-05 50.2 33.0 60 382-443 896-955 (1158)
319 1tl2_A L10, protein (tachylect 96.6 0.039 1.3E-06 48.3 13.2 69 84-155 90-158 (236)
320 2vpj_A Kelch-like protein 12; 96.6 0.18 6.1E-06 47.5 19.4 64 203-268 62-140 (301)
321 3ei3_A DNA damage-binding prot 96.4 1.8 6.1E-05 49.0 35.1 74 81-160 553-636 (1158)
322 2vpj_A Kelch-like protein 12; 96.3 0.34 1.2E-05 45.5 19.3 146 92-267 112-280 (301)
323 3ii7_A Kelch-like protein 7; p 96.3 0.76 2.6E-05 43.2 21.8 145 94-268 13-181 (306)
324 3ii7_A Kelch-like protein 7; p 96.3 0.48 1.6E-05 44.6 20.0 64 203-268 55-130 (306)
325 3sbq_A Nitrous-oxide reductase 96.2 0.072 2.5E-06 53.4 13.9 122 23-150 63-197 (638)
326 2xn4_A Kelch-like protein 2; s 96.2 0.76 2.6E-05 43.1 21.3 107 140-269 61-186 (302)
327 2xn4_A Kelch-like protein 2; s 96.2 0.34 1.2E-05 45.6 18.7 64 203-268 204-279 (302)
328 3s25_A Hypothetical 7-bladed b 96.2 0.85 2.9E-05 42.8 23.0 139 89-268 21-179 (302)
329 1xi4_A Clathrin heavy chain; a 96.1 1 3.5E-05 50.9 23.2 250 87-450 71-338 (1630)
330 1tl2_A L10, protein (tachylect 96.0 0.11 3.7E-06 45.6 12.5 154 83-263 42-206 (236)
331 4asc_A Kelch repeat and BTB do 96.0 1 3.5E-05 42.5 21.0 102 143-268 7-129 (315)
332 1zgk_A Kelch-like ECH-associat 95.8 0.71 2.4E-05 43.5 18.9 147 92-268 121-290 (308)
333 3s25_A Hypothetical 7-bladed b 95.7 0.8 2.7E-05 43.0 18.3 140 87-266 58-217 (302)
334 1xi4_A Clathrin heavy chain; a 95.5 0.63 2.1E-05 52.6 18.7 178 58-272 90-296 (1630)
335 3ott_A Two-component system se 95.5 3.6 0.00012 44.5 36.4 199 14-268 63-263 (758)
336 4asc_A Kelch repeat and BTB do 95.3 1.6 5.5E-05 41.1 19.4 147 92-268 98-280 (315)
337 1cru_A Protein (soluble quinop 95.1 1.3 4.5E-05 44.4 18.8 54 382-436 370-429 (454)
338 1zgk_A Kelch-like ECH-associat 95.0 2.3 7.9E-05 39.9 23.1 147 92-268 70-243 (308)
339 2zwa_A Leucine carboxyl methyl 94.4 3.9 0.00013 43.6 21.2 153 92-269 451-639 (695)
340 2woz_A Kelch repeat and BTB do 94.4 3.4 0.00012 38.9 19.0 64 203-268 206-290 (318)
341 3ott_A Two-component system se 94.0 7.9 0.00027 41.7 35.2 224 13-317 21-249 (758)
342 2uvk_A YJHT; unknown function, 93.7 2.3 7.8E-05 40.9 16.6 59 392-453 286-352 (357)
343 2woz_A Kelch repeat and BTB do 92.6 6.8 0.00023 36.8 21.5 65 203-268 109-187 (318)
344 2be1_A Serine/threonine-protei 92.1 6.1 0.00021 37.5 16.2 120 32-168 12-138 (339)
345 2wg3_C Hedgehog-interacting pr 91.5 12 0.00041 37.3 25.5 27 15-45 15-41 (463)
346 2uvk_A YJHT; unknown function, 91.5 10 0.00034 36.3 24.0 29 380-408 316-350 (357)
347 2zwa_A Leucine carboxyl methyl 91.4 16 0.00055 38.8 20.6 65 203-268 451-525 (695)
348 3sbq_A Nitrous-oxide reductase 88.4 2 6.7E-05 43.4 9.4 73 193-266 323-409 (638)
349 2be1_A Serine/threonine-protei 87.9 1.7 5.7E-05 41.4 8.5 65 205-269 11-80 (339)
350 2wg3_C Hedgehog-interacting pr 87.5 24 0.00083 35.1 29.1 58 82-140 14-79 (463)
351 3q6k_A 43.2 kDa salivary prote 81.2 40 0.0014 32.4 20.0 99 215-318 124-242 (381)
352 3qhy_B Beta-lactamase inhibito 81.2 33 0.0011 31.4 19.7 144 83-265 25-168 (282)
353 3qhy_B Beta-lactamase inhibito 80.0 36 0.0012 31.1 17.7 144 83-265 103-246 (282)
354 3uc1_A DNA gyrase subunit A; D 73.9 59 0.002 30.5 21.6 177 13-223 94-279 (327)
355 3b7f_A Glycosyl hydrolase, BNR 72.1 72 0.0025 30.7 21.0 156 81-256 54-254 (394)
356 4gq2_M Nucleoporin NUP120; bet 70.1 57 0.0019 36.1 14.3 39 236-274 237-275 (950)
357 4gq2_M Nucleoporin NUP120; bet 68.4 38 0.0013 37.5 12.4 38 193-230 236-273 (950)
358 1suu_A DNA gyrase subunit A; t 60.3 1.1E+02 0.0037 28.4 23.4 110 140-265 113-231 (312)
359 3b7f_A Glycosyl hydrolase, BNR 58.9 1.3E+02 0.0044 28.8 21.3 58 194-253 233-297 (394)
360 1wp5_A Topoisomerase IV; broke 55.9 1.3E+02 0.0045 28.0 20.2 204 23-264 3-224 (323)
361 3uc1_A DNA gyrase subunit A; D 55.6 1.3E+02 0.0046 28.0 23.8 170 82-265 95-279 (327)
362 3zwu_A Alkaline phosphatase PH 54.6 40 0.0014 34.7 8.7 59 194-252 477-548 (592)
363 4a9v_A PHOX; hydrolase, beta-p 48.8 81 0.0028 32.1 9.6 61 193-253 476-549 (592)
364 4fhn_B Nucleoporin NUP120; pro 48.8 56 0.0019 37.0 9.7 38 237-274 240-277 (1139)
365 4fhn_B Nucleoporin NUP120; pro 45.9 30 0.001 39.3 6.8 37 194-230 239-275 (1139)
366 4a9v_A PHOX; hydrolase, beta-p 44.4 53 0.0018 33.4 7.5 39 392-430 510-548 (592)
367 3zwu_A Alkaline phosphatase PH 43.3 54 0.0018 33.7 7.6 39 392-430 510-548 (592)
368 3f7f_A Nucleoporin NUP120; nuc 42.2 1.1E+02 0.0039 32.1 9.8 36 194-231 223-258 (729)
369 3q6k_A 43.2 kDa salivary prote 41.2 2.5E+02 0.0084 26.9 25.6 154 55-223 124-306 (381)
370 3kci_A Probable E3 ubiquitin-p 41.1 2.4E+02 0.0084 26.9 27.0 121 132-265 55-187 (389)
371 1sqj_A OXG-RCBH, oligoxylogluc 39.7 3.8E+02 0.013 28.7 21.4 26 13-42 14-39 (789)
372 4hvt_A Ritya.17583.B, post-pro 36.1 4.1E+02 0.014 28.0 22.3 95 389-484 318-429 (711)
373 3f7f_A Nucleoporin NUP120; nuc 35.8 49 0.0017 34.8 5.9 37 236-274 223-259 (729)
374 3mez_B Mannose-specific lectin 32.1 1.6E+02 0.0056 22.1 7.1 61 381-443 24-84 (113)
375 4hvt_A Ritya.17583.B, post-pro 31.9 4.8E+02 0.016 27.5 23.3 29 84-112 131-166 (711)
376 1zi0_A DNA gyrase subunit A; b 31.2 3.1E+02 0.011 25.1 25.7 170 82-265 95-277 (307)
377 3no0_A DNA gyrase subunit A; D 31.0 3E+02 0.01 24.8 24.3 169 81-265 67-246 (276)
378 3no0_A DNA gyrase subunit A; D 27.1 3.5E+02 0.012 24.4 20.8 128 12-162 66-198 (276)
379 3l6v_A GYRA, DNA gyrase subuni 25.9 4.3E+02 0.015 25.1 26.8 80 82-162 99-182 (370)
380 4h3o_A Lectin; cadmium, plant 22.6 2.4E+02 0.0081 20.9 10.9 46 86-147 54-99 (105)
381 1sqj_A OXG-RCBH, oligoxylogluc 21.7 7.5E+02 0.026 26.3 20.7 64 83-150 122-190 (789)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.3e-50 Score=432.72 Aligned_cols=417 Identities=16% Similarity=0.194 Sum_probs=320.0
Q ss_pred ceeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCcccc-------cc-----------------------
Q psy15549 6 PEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRL-------KT----------------------- 55 (621)
Q Consensus 6 ~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~-------~~----------------------- 55 (621)
...+.+|.+.|++++|+|||+ +||+|+.||.|++||+...... +.
T Consensus 52 ~~~~~~h~~~v~~~~~spdg~-----~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~ 126 (611)
T 1nr0_A 52 TEIYTEHSHQTTVAKTSPSGY-----YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 126 (611)
T ss_dssp CEEECCCSSCEEEEEECTTSS-----EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred CeEecCCCCceEEEEECCCCc-----EEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC
Confidence 345667999999999999999 9999999999999998532211 01
Q ss_pred --ceeEEeccccccccceeeccccccccCcEEEEEEccCCC-EEEEEc-CCceEEEEeccCccccccceecccccccCCC
Q psy15549 56 --GKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE-LLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKA 131 (621)
Q Consensus 56 --~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~ 131 (621)
+.||.+..+.. ...+.+|...|++++|+|++. .|++|+ |+.|++|+.... .....+.+|...
T Consensus 127 ~~~~v~~wd~~~~-------~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-------~~~~~l~~H~~~ 192 (611)
T 1nr0_A 127 RFGHVFLFDTGTS-------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-------KFKSTFGEHTKF 192 (611)
T ss_dssp CSEEEEETTTCCB-------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-------EEEEEECCCSSC
T ss_pred ceeEEEEeeCCCC-------cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-------eEeeeeccccCc
Confidence 12222222222 235789999999999999987 588887 889999997654 566778999999
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe
Q psy15549 132 VNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS 211 (621)
Q Consensus 132 V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~ 211 (621)
|.+++|+|+|++|++|+.|++|++||+.+++....+... .....+|...|.+++|+|++++|++++
T Consensus 193 V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~--------------~~~~~~h~~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD--------------SLKNVAHSGSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT--------------TSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccc--------------cccccccCCCEEEEEECCCCCEEEEEe
Confidence 999999999999999999999999999887654221000 001127999999999999999999999
Q ss_pred CCCeEEEEECCCCcEEE-------------------------------------------EeccCCcceEEEEEcCCCCE
Q psy15549 212 VDNTAIMWDVHKGKNLG-------------------------------------------ILTEHKKFVQGVAWDPKNQY 248 (621)
Q Consensus 212 ~dg~i~vwd~~~~~~~~-------------------------------------------~~~~~~~~v~~l~~sp~~~~ 248 (621)
.|++|++||+.+++++. .+.+|...|.+++|+|+|++
T Consensus 259 ~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~ 338 (611)
T 1nr0_A 259 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT 338 (611)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE
Confidence 99999999998876543 33478889999999999999
Q ss_pred EEEEeCCCcEEEEEccCceeeeecc-cCCCCCCC-----ccc----cccccc----------------------------
Q psy15549 249 VATLSSDRSLRTYSIQSKKVISRAC-RSKLPVDS-----SHE----LFDKVV---------------------------- 290 (621)
Q Consensus 249 l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~-----~~~----~~~~~~---------------------------- 290 (621)
|++++.|+.|++||+.++.....+. .+...+.. ... ..+...
T Consensus 339 l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 339 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence 9999999999999999887655431 11111000 000 000000
Q ss_pred ----------------ccccc-----CCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceec
Q psy15549 291 ----------------PLFHD-----DTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349 (621)
Q Consensus 291 ----------------~~~~~-----~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 349 (621)
.++.. ..+...+.+++|+|||++|++++ .|+.+++|++...... ....
T Consensus 419 ~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs-----~D~~v~lwd~~~~~~~-----~~~~- 487 (611)
T 1nr0_A 419 VSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGG-----QDSKVHVYKLSGASVS-----EVKT- 487 (611)
T ss_dssp ECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEE-----TTSEEEEEEEETTEEE-----EEEE-
T ss_pred EeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeC-----CCCeEEEEEccCCcee-----eeec-
Confidence 00000 01234578999999999999999 8999999998632110 0111
Q ss_pred CCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCC-CceeEE-EecccccceEEEEEcCCCCeE
Q psy15549 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQH-ASPFAF-IANIHYTKLTDITWSSDGKVL 427 (621)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~-~~~~h~~~v~~~~~spdg~~l 427 (621)
..|...+.++.|+| ++++|++++.|+.|++||+.+ ++.+.. ...+|...|++++|+|||++|
T Consensus 488 ~~h~~~v~~v~fsp----------------dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~l 551 (611)
T 1nr0_A 488 IVHPAEITSVAFSN----------------NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551 (611)
T ss_dssp EECSSCEEEEEECT----------------TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEE
T ss_pred cCCCCceEEEEECC----------------CCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEE
Confidence 45777888899888 789999999999999999988 555443 233599999999999999999
Q ss_pred EEEeCCCcEEEEEecCCc-CC-cccCCC-CCcccccCCCCCCCCcccCCCcccHHHhcc
Q psy15549 428 IASSTDGYCSIISFGDNE-IG-IPYVPP-SGEESKENDPTKGEPVRSEDKPRSAEQAKG 483 (621)
Q Consensus 428 ~s~s~dg~i~iw~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~w~~ 483 (621)
|+|+.|++|++|++.++. .. ..+.+| ...+..+.|++++. +++++.|+.|++|++
T Consensus 552 asgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred EEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 999999999999999865 33 456677 78899999999998 999999999999986
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.8e-48 Score=414.71 Aligned_cols=412 Identities=15% Similarity=0.214 Sum_probs=300.8
Q ss_pred ecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEE
Q psy15549 10 WHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRF 89 (621)
Q Consensus 10 ~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 89 (621)
..+++.+.+++|+|||+ +||+++ ++.|+ ||++.++.... .+.+|...|++++|
T Consensus 15 ~~~~g~~~~~~~spdg~-----~l~~~~-~~~v~--------------l~~~~~~~~~~-------~~~~h~~~v~~~~~ 67 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGD-----KIQYCN-GTSVY--------------TVPVGSLTDTE-------IYTEHSHQTTVAKT 67 (611)
T ss_dssp CCCTTCCCCCEECTTSS-----EEEEEE-TTEEE--------------EEETTCSSCCE-------EECCCSSCEEEEEE
T ss_pred CcccCceeEEeeCCCCC-----EEEeCC-CCEEE--------------EecCCCcccCe-------EecCCCCceEEEEE
Confidence 34678899999999998 999988 46888 99987655433 48899999999999
Q ss_pred ccCCCEEEEEc-CCceEEEEeccCccccccceecccc-------------------------------------------
Q psy15549 90 SPNGELLASGD-DVGKEIWYLTERESGIANVEFASDL------------------------------------------- 125 (621)
Q Consensus 90 spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~------------------------------------------- 125 (621)
+|+|++||+|+ |+.|+|||+..+.. .....+
T Consensus 68 spdg~~lasg~~d~~v~lWd~~~~~~-----~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~ 142 (611)
T 1nr0_A 68 SPSGYYCASGDVHGNVRIWDTTQTTH-----ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN 142 (611)
T ss_dssp CTTSSEEEEEETTSEEEEEESSSTTC-----CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBC
T ss_pred CCCCcEEEEEeCCCCEEEeECCCCcc-----eeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcce
Confidence 99999999998 88899999864321 112233
Q ss_pred -cccCCCeEEEEECCCCC-EEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC
Q psy15549 126 -SRHQKAVNVVRFSPNGE-LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT 203 (621)
Q Consensus 126 -~~h~~~V~~i~~sp~g~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd 203 (621)
.+|...|++++|+|++. .|++|+.|++|++||..+.+ ....+.+|...|++++|+|+
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~---------------------~~~~l~~H~~~V~~v~fspd 201 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK---------------------FKSTFGEHTKFVHSVRYNPD 201 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE---------------------EEEEECCCSSCEEEEEECTT
T ss_pred ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe---------------------EeeeeccccCceEEEEECCC
Confidence 34444555555555443 35555555555555543332 34667899999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEec-------cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCC
Q psy15549 204 STHLISGSVDNTAIMWDVHKGKNLGILT-------EHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSK 276 (621)
Q Consensus 204 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 276 (621)
+++|++++.|+.|++||+.+++.+..+. +|.+.|.+++|+|++++|++++.|++|++||+.+++.+..+....
T Consensus 202 g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~ 281 (611)
T 1nr0_A 202 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 281 (611)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCC
Confidence 9999999999999999999999988884 799999999999999999999999999999999998877664321
Q ss_pred CCCCC-------cc----cccccccc---------ccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeee
Q psy15549 277 LPVDS-------SH----ELFDKVVP---------LFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHV 336 (621)
Q Consensus 277 ~~~~~-------~~----~~~~~~~~---------~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~ 336 (621)
..... .. ...+.... ......|...|.+++|+|||++|++++ .|+.+++|++...
T Consensus 282 ~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-----~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-----AEGHINSWDISTG 356 (611)
T ss_dssp SGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-----TTSCEEEEETTTC
T ss_pred CccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-----CCCcEEEEECCCC
Confidence 10000 00 00011111 112345778899999999999999999 8999999997532
Q ss_pred eeecccCCCceecCCcccceeeeeccc-------------------------------------eeeecCCCC-------
Q psy15549 337 FTRACLNKPAVCLPSLQYYSVAVKCCP-------------------------------------VLFELKPSD------- 372 (621)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~------- 372 (621)
....... ..|...+.++.+++ ....+.+++
T Consensus 357 ~~~~~~~------~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~ 430 (611)
T 1nr0_A 357 ISNRVFP------DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 430 (611)
T ss_dssp CEEECSS------CSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE
T ss_pred ceeeecc------cCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEe
Confidence 2111100 01111111111110 000000110
Q ss_pred ---------------------CCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEe
Q psy15549 373 ---------------------DKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASS 431 (621)
Q Consensus 373 ---------------------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s 431 (621)
....++++++++++++.|+.|++||+.++........+|...|++++|+|||++|++++
T Consensus 431 ~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s 510 (611)
T 1nr0_A 431 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD 510 (611)
T ss_dssp SSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEc
Confidence 12346778899999999999999999887542222246999999999999999999999
Q ss_pred CCCcEEEEEecC-CcCCcc--cCCCCCcccccCCCCCCCCcccCCCcccHHHhcccC
Q psy15549 432 TDGYCSIISFGD-NEIGIP--YVPPSGEESKENDPTKGEPVRSEDKPRSAEQAKGEG 485 (621)
Q Consensus 432 ~dg~i~iw~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~~~~ 485 (621)
.|++|++|++.+ +++... +..|...+..+.|+|+|+.+++++.|+.+++|++..
T Consensus 511 ~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 511 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred CCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 999999999997 666554 344888999999999999999999999999999764
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.3e-46 Score=400.59 Aligned_cols=362 Identities=22% Similarity=0.370 Sum_probs=315.2
Q ss_pred eeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 7 EISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 7 ~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
.....|...|.+++|+|+++ +|++++.|+.|+ +|+.... ....+.+|...|.+
T Consensus 215 ~~~~~~~~~v~~~~~s~dg~-----~l~~~~~d~~i~--------------~w~~~~~--------~~~~~~~~~~~v~~ 267 (577)
T 2ymu_A 215 QTLTGHSSSVRGVAFSPDGQ-----TIASASDDKTVK--------------LWNRNGQ--------LLQTLTGHSSSVNG 267 (577)
T ss_dssp EEEECCSSCEEEEEECTTSS-----CEEEEETTSCEE--------------EECTTSC--------EEEEECCCSSCEEE
T ss_pred EEEecCCCCEEEEEECCCCC-----EEEEEeCCCEEE--------------EEeCCCC--------EEEEEecCCCCEEE
Confidence 34566888999999999998 999999999999 8885422 23357889999999
Q ss_pred EEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCC
Q psy15549 87 VRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLP 165 (621)
Q Consensus 87 l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~ 165 (621)
++|+|++++|++++ ++.+++|+... .....+.+|...|.+++|+|++++|++++.|+.|++||+....
T Consensus 268 v~~~~d~~~l~~~~~d~~i~~w~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~--- 336 (577)
T 2ymu_A 268 VAFRPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH--- 336 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTS--------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE---
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCCC--------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---
Confidence 99999999999988 88899999653 4456678999999999999999999999999999999976543
Q ss_pred CCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCC
Q psy15549 166 EFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPK 245 (621)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~ 245 (621)
...+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|+|+
T Consensus 337 -------------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d 396 (577)
T 2ymu_A 337 -------------------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD 396 (577)
T ss_dssp -------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTT
T ss_pred -------------------eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCC
Confidence 2556789999999999999999999999999999995 67888899999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCC
Q psy15549 246 NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSD 325 (621)
Q Consensus 246 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d 325 (621)
+++|++++.|+.|++||. +++.+..+. .+...|.+++|+||+++|++++ .|
T Consensus 397 g~~l~~~~~d~~v~~~~~-~~~~~~~~~-----------------------~~~~~v~~~~~s~d~~~l~~~~-----~d 447 (577)
T 2ymu_A 397 GQTIASASDDKTVKLWNR-NGQLLQTLT-----------------------GHSSSVWGVAFSPDDQTIASAS-----DD 447 (577)
T ss_dssp SSCEEEEETTSEEEEECT-TCCEEEEEE-----------------------CCSSCEEEEEECTTSSEEEEEE-----TT
T ss_pred CCEEEEEeCCCEEEEEeC-CCCEEEEec-----------------------CCCCCeEEEEECCCCCEEEEEc-----CC
Confidence 999999999999999996 455555443 3345679999999999999998 89
Q ss_pred CCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeE
Q psy15549 326 STRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFA 405 (621)
Q Consensus 326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 405 (621)
+.+++|+.. ......+.+|...+.++.|+| ++.+|++++.|+.|++||. +++.+.
T Consensus 448 ~~v~~w~~~--------~~~~~~~~~~~~~v~~~~~sp----------------d~~~las~~~d~~i~iw~~-~~~~~~ 502 (577)
T 2ymu_A 448 KTVKLWNRN--------GQLLQTLTGHSSSVRGVAFSP----------------DGQTIASASDDKTVKLWNR-NGQLLQ 502 (577)
T ss_dssp SEEEEEETT--------SCEEEEEECCSSCEEEEEECT----------------TSCEEEEEETTSEEEEEET-TSCEEE
T ss_pred CEEEEEECC--------CCEEEEEcCCCCCEEEEEEcC----------------CCCEEEEEeCCCEEEEEcC-CCCEEE
Confidence 999999853 233445667888888888887 7789999999999999995 677777
Q ss_pred EEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCCcccCCCcccHHHhc
Q psy15549 406 FIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEPVRSEDKPRSAEQAK 482 (621)
Q Consensus 406 ~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~ 482 (621)
.+ .+|...|++++|+|||++||+++.||.|++||. ++++...+.+|...+..+.|+|+++.+++++.|+.|++|+
T Consensus 503 ~~-~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 503 TL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EE-eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 77 469999999999999999999999999999995 6788888999999999999999999999999999999995
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.4e-45 Score=371.33 Aligned_cols=286 Identities=21% Similarity=0.369 Sum_probs=257.8
Q ss_pred eeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEE
Q psy15549 8 ISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVV 87 (621)
Q Consensus 8 ~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l 87 (621)
.+.+|.++|++++|+|++. +|++|+.||.|+ |||+.++.... .+.+|.+.|.++
T Consensus 103 ~l~gh~~~V~~~~~~p~~~-----~l~s~s~Dg~i~--------------vwd~~~~~~~~-------~l~~h~~~V~~v 156 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFS-----VMVSASEDATIK--------------VWDYETGDFER-------TLKGHTDSVQDI 156 (410)
T ss_dssp EEECCSSCEEEEEECSSSS-----EEEEEESSSCEE--------------EEETTTCCCCE-------EECCCSSCEEEE
T ss_pred eecccCCcEEEEEEcCCCC-----EEEEEeCCCeEE--------------EEECCCCcEEE-------EEeccCCcEEEE
Confidence 4567999999999999998 999999999999 99988776543 488999999999
Q ss_pred EEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC
Q psy15549 88 RFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPE 166 (621)
Q Consensus 88 ~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~ 166 (621)
+|+|++++|++|+ |+.|++|++... ..+..+.+|...|.+++|+|++++|++|+.|++|++||+.++..+
T Consensus 157 ~~~~~~~~l~sgs~D~~i~iwd~~~~-------~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~-- 227 (410)
T 1vyh_C 157 SFDHSGKLLASCSADMTIKLWDFQGF-------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-- 227 (410)
T ss_dssp EECTTSSEEEEEETTSCCCEEETTSS-------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE--
T ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE--
Confidence 9999999999998 889999999876 667788999999999999999999999999999999999988753
Q ss_pred CCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCC-
Q psy15549 167 FPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPK- 245 (621)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~- 245 (621)
..+.+|...|.++.|+|++.+|++|+.|+.|++||+.++++...+..|...|.+++|+|+
T Consensus 228 -------------------~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 288 (410)
T 1vyh_C 228 -------------------KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 288 (410)
T ss_dssp -------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSC
T ss_pred -------------------EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcc
Confidence 667899999999999999999999999999999999999999999999999999999996
Q ss_pred -------------------CCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeee
Q psy15549 246 -------------------NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLT 306 (621)
Q Consensus 246 -------------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 306 (621)
+.+|++|+.|+.|++||++++..+..+.. +...|.+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~-----------------------h~~~v~~v~ 345 (410)
T 1vyh_C 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-----------------------HDNWVRGVL 345 (410)
T ss_dssp GGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC-----------------------CSSCEEEEE
T ss_pred cccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC-----------------------CCCcEEEEE
Confidence 67899999999999999999988776643 344578899
Q ss_pred ecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEE
Q psy15549 307 FSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIA 386 (621)
Q Consensus 307 ~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 386 (621)
|+|+|++|++++
T Consensus 346 ~~~~g~~l~s~s-------------------------------------------------------------------- 357 (410)
T 1vyh_C 346 FHSGGKFILSCA-------------------------------------------------------------------- 357 (410)
T ss_dssp ECSSSSCEEEEE--------------------------------------------------------------------
T ss_pred EcCCCCEEEEEe--------------------------------------------------------------------
Confidence 999887776654
Q ss_pred EEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEe
Q psy15549 387 VATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISF 441 (621)
Q Consensus 387 ~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~ 441 (621)
.|+.|++||+.+++.+..+ .+|...|++++|+|++.+|++|+.||+|++|++
T Consensus 358 --~D~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 358 --DDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp --TTTEEEEECCTTSCCCEEE-ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred --CCCeEEEEECCCCceEEEE-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 7899999999999888888 469999999999999999999999999999986
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.5e-45 Score=391.42 Aligned_cols=381 Identities=23% Similarity=0.393 Sum_probs=324.1
Q ss_pred eeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 7 EISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 7 ~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
.....|...|.+++|+|+++ +|++|+.|+.|+ +|+... + ....+.+|...|.+
T Consensus 174 ~~~~~~~~~v~~~~~~~~~~-----~l~~~~~d~~v~--------------~w~~~~-~-------~~~~~~~~~~~v~~ 226 (577)
T 2ymu_A 174 QTLTGHSSSVWGVAFSPDGQ-----TIASASDDKTVK--------------LWNRNG-Q-------LLQTLTGHSSSVRG 226 (577)
T ss_dssp EEEECCSSCEEEEEECTTSS-----CEEEEETTSEEE--------------EECTTS-C-------EEEEEECCSSCEEE
T ss_pred eeccCCCcceeeeeecCCCC-----EEEEEcCCCEEE--------------EEeCCC-c-------EEEEEecCCCCEEE
Confidence 34556888999999999998 999999999999 888532 1 23357889999999
Q ss_pred EEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCC
Q psy15549 87 VRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLP 165 (621)
Q Consensus 87 l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~ 165 (621)
++|+|++++|++++ ++.+++|+... ..+..+.+|...|.+++|+|++++|++++.|+.|++|+....
T Consensus 227 ~~~s~dg~~l~~~~~d~~i~~w~~~~--------~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~---- 294 (577)
T 2ymu_A 227 VAFSPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ---- 294 (577)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTTS--------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC----
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCC--------CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc----
Confidence 99999999999988 88899998643 456678899999999999999999999999999999996432
Q ss_pred CCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCC
Q psy15549 166 EFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPK 245 (621)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~ 245 (621)
....+.+|...|.+++|+|++++|++++.|+.|++||+. +..+..+..|...|.+++|+|+
T Consensus 295 ------------------~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~ 355 (577)
T 2ymu_A 295 ------------------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPD 355 (577)
T ss_dssp ------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTT
T ss_pred ------------------EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCC
Confidence 136678999999999999999999999999999999975 5566778899999999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCC
Q psy15549 246 NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSD 325 (621)
Q Consensus 246 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d 325 (621)
+++|++++.|+.|++||. +++.+..+. .+...|.+++|+|+|++|++++ .|
T Consensus 356 g~~l~~~~~dg~v~~~~~-~~~~~~~~~-----------------------~~~~~v~~~~~s~dg~~l~~~~-----~d 406 (577)
T 2ymu_A 356 GQTIASASDDKTVKLWNR-NGQLLQTLT-----------------------GHSSSVRGVAFSPDGQTIASAS-----DD 406 (577)
T ss_dssp SSEEEEEETTSEEEEEET-TCCEEEEEE-----------------------CCSSCEEEEEECTTSSCEEEEE-----TT
T ss_pred CCEEEEEeCCCEEEEEcC-CCCEEEEec-----------------------CCCCCeEEEEECCCCCEEEEEe-----CC
Confidence 999999999999999996 455555543 2345679999999999999998 89
Q ss_pred CCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeE
Q psy15549 326 STRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFA 405 (621)
Q Consensus 326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 405 (621)
+.+++|+.. ......+.+|...+.++.|+| ++.++++++.|+.|++||. +++.+.
T Consensus 407 ~~v~~~~~~--------~~~~~~~~~~~~~v~~~~~s~----------------d~~~l~~~~~d~~v~~w~~-~~~~~~ 461 (577)
T 2ymu_A 407 KTVKLWNRN--------GQLLQTLTGHSSSVWGVAFSP----------------DDQTIASASDDKTVKLWNR-NGQLLQ 461 (577)
T ss_dssp SEEEEECTT--------CCEEEEEECCSSCEEEEEECT----------------TSSEEEEEETTSEEEEEET-TSCEEE
T ss_pred CEEEEEeCC--------CCEEEEecCCCCCeEEEEECC----------------CCCEEEEEcCCCEEEEEEC-CCCEEE
Confidence 999999853 233445667788888888887 7789999999999999996 456666
Q ss_pred EEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCCcccCCCcccHHHhcccC
Q psy15549 406 FIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEPVRSEDKPRSAEQAKGEG 485 (621)
Q Consensus 406 ~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~~~~ 485 (621)
.+ .+|...|++++|+|||++|++++.|+.|++|+. ++++...+..|...+..+.|+|+++.+++++.|+.|++|+..+
T Consensus 462 ~~-~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 462 TL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp EE-ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred EE-cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence 66 469999999999999999999999999999995 6788889999999999999999999999999999999999888
Q ss_pred cccccccc------CCCCCCCc
Q psy15549 486 KVLGEKQT------GNKVSPTD 501 (621)
Q Consensus 486 ~~~~~~~~------~~~~s~~~ 501 (621)
+.+..+.+ ...|+|++
T Consensus 540 ~~~~~~~~h~~~v~~~~fs~dg 561 (577)
T 2ymu_A 540 QLLQTLTGHSSSVWGVAFSPDG 561 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTS
T ss_pred CEEEEEcCCCCCEEEEEEcCCC
Confidence 77766654 34456655
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-44 Score=353.90 Aligned_cols=292 Identities=20% Similarity=0.335 Sum_probs=253.0
Q ss_pred eecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEE
Q psy15549 9 SWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVR 88 (621)
Q Consensus 9 ~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 88 (621)
...|.++|++|+|+|+++ .+..+|++|+.|+.|+ ||++..... .....+.+|...|.+++
T Consensus 28 ~~~H~~~V~~v~~~~~~~-~~~~~l~tgs~D~~v~--------------vW~~~~~~~-----~~~~~l~gh~~~v~~~~ 87 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKK-ENSETVVTGSLDDLVK--------------VWKWRDERL-----DLQWSLEGHQLGVVSVD 87 (321)
T ss_dssp TTSSSSCEEEEEEC--------CEEEEEETTSCEE--------------EEEEETTEE-----EEEEEECCCSSCEEEEE
T ss_pred cccCCCcEEEEEEecCCC-CCCCEEEEEcCCCCEE--------------EEECCCCCe-----eeeeeeccCCCCEEEEE
Confidence 347999999999998642 1223899999999999 888875432 23345789999999999
Q ss_pred EccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC
Q psy15549 89 FSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEF 167 (621)
Q Consensus 89 ~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 167 (621)
|++++.++++++ |+.|++|++..+ ..+..+..|...+.+++|+|++++|++++.||.|++|++.+++..
T Consensus 88 ~~~~~~~l~s~s~D~~i~lWd~~~~-------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~--- 157 (321)
T 3ow8_A 88 ISHTLPIAASSSLDAHIRLWDLENG-------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE--- 157 (321)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTT-------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE---
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCC-------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee---
Confidence 999999999998 899999999877 566777888899999999999999999999999999999887643
Q ss_pred CCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCC
Q psy15549 168 PSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQ 247 (621)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 247 (621)
..+..|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++
T Consensus 158 ------------------~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~ 219 (321)
T 3ow8_A 158 ------------------YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 219 (321)
T ss_dssp ------------------EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC
T ss_pred ------------------EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC
Confidence 55677888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCC
Q psy15549 248 YVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDST 327 (621)
Q Consensus 248 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~ 327 (621)
+|++++.|+.|++||+++++....+. .+...|.+++|+|++++|++++
T Consensus 220 ~l~s~s~dg~i~iwd~~~~~~~~~~~-----------------------~h~~~v~~~~~sp~~~~l~s~s--------- 267 (321)
T 3ow8_A 220 LLVTASDDGYIKIYDVQHANLAGTLS-----------------------GHASWVLNVAFCPDDTHFVSSS--------- 267 (321)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEEC-----------------------CCSSCEEEEEECTTSSEEEEEE---------
T ss_pred EEEEEcCCCeEEEEECCCcceeEEEc-----------------------CCCCceEEEEECCCCCEEEEEe---------
Confidence 99999999999999999887766654 3345578899999887776654
Q ss_pred CcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEE
Q psy15549 328 RKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFI 407 (621)
Q Consensus 328 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 407 (621)
.|+.|++||+.+++++..+
T Consensus 268 -------------------------------------------------------------~D~~v~iwd~~~~~~~~~~ 286 (321)
T 3ow8_A 268 -------------------------------------------------------------SDKSVKVWDVGTRTCVHTF 286 (321)
T ss_dssp -------------------------------------------------------------TTSCEEEEETTTTEEEEEE
T ss_pred -------------------------------------------------------------CCCcEEEEeCCCCEEEEEE
Confidence 7899999999999998888
Q ss_pred ecccccceEEEEEcCCCCeEEEEeCCCcEEEEEec
Q psy15549 408 ANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFG 442 (621)
Q Consensus 408 ~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~ 442 (621)
. +|...|.+++|+|+|++|++++.||.|++||+.
T Consensus 287 ~-~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 287 F-DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp C-CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred c-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 4 699999999999999999999999999999963
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.5e-44 Score=357.05 Aligned_cols=291 Identities=21% Similarity=0.367 Sum_probs=253.2
Q ss_pred eeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 7 EISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 7 ~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
..+.+|.++|++++|+|+++ +|++|+.||.|+ |||+.++.... .+..|...|.+
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~-----~l~s~s~Dg~v~--------------iWd~~~~~~~~-------~~~~~~~~v~~ 102 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSR-----LLLSASQDGKLI--------------IWDSYTTNKVH-------AIPLRSSWVMT 102 (340)
T ss_dssp EEECCCSSCEEEEEECTTSS-----EEEEEETTTEEE--------------EEETTTCCEEE-------EEECSSSCEEE
T ss_pred eeecCCCCceEEEEECCCCC-----EEEEEeCCCcEE--------------EEECCCCCcce-------EeecCCccEEE
Confidence 45667999999999999998 999999999999 99887665433 37789999999
Q ss_pred EEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCC
Q psy15549 87 VRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLP 165 (621)
Q Consensus 87 l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~ 165 (621)
++|+|+|++|++|+ |+.+++|++..... .......+.+|...|.++.|++++. |++++.|++|++||+.++..+
T Consensus 103 ~~~s~~~~~l~s~~~d~~v~iw~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~- 177 (340)
T 1got_B 103 CAYAPSGNYVACGGLDNICSIYNLKTREG---NVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQT- 177 (340)
T ss_dssp EEECTTSSEEEEEETTCEEEEEETTTCSB---SCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEE-
T ss_pred EEECCCCCEEEEEeCCCeEEEEECccCCC---cceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEE-
Confidence 99999999999988 88899999876532 1244556789999999999998774 889999999999999887643
Q ss_pred CCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCC
Q psy15549 166 EFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPK 245 (621)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~ 245 (621)
..+.+|...|.+++|+|++++|++|+.|+.|++||++++.++..+.+|...|.+++|+|+
T Consensus 178 --------------------~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~ 237 (340)
T 1got_B 178 --------------------TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237 (340)
T ss_dssp --------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT
T ss_pred --------------------EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCC
Confidence 667899999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCC
Q psy15549 246 NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSD 325 (621)
Q Consensus 246 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d 325 (621)
+++|++++.||.|++||+++++.+..+.. ......|.+++|+|+|++|++++
T Consensus 238 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~---------------------~~~~~~v~~~~~s~~g~~l~~g~------- 289 (340)
T 1got_B 238 GNAFATGSDDATCRLFDLRADQELMTYSH---------------------DNIICGITSVSFSKSGRLLLAGY------- 289 (340)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECC---------------------TTCCSCEEEEEECTTSSEEEEEE-------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEcc---------------------CCcccceEEEEECCCCCEEEEEC-------
Confidence 99999999999999999998876655421 11223578888888887776654
Q ss_pred CCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeE
Q psy15549 326 STRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFA 405 (621)
Q Consensus 326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 405 (621)
.|+.|++||+.+++.+.
T Consensus 290 ---------------------------------------------------------------~d~~i~vwd~~~~~~~~ 306 (340)
T 1got_B 290 ---------------------------------------------------------------DDFNCNVWDALKADRAG 306 (340)
T ss_dssp ---------------------------------------------------------------TTSEEEEEETTTCCEEE
T ss_pred ---------------------------------------------------------------CCCeEEEEEcccCcEee
Confidence 78999999999998888
Q ss_pred EEecccccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q psy15549 406 FIANIHYTKLTDITWSSDGKVLIASSTDGYCSIIS 440 (621)
Q Consensus 406 ~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~ 440 (621)
.+ .+|...|++++|+|+|++|++|+.||+|+|||
T Consensus 307 ~~-~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 307 VL-AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred Ee-ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 77 46999999999999999999999999999996
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2e-43 Score=352.30 Aligned_cols=295 Identities=20% Similarity=0.325 Sum_probs=251.6
Q ss_pred ceeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEE
Q psy15549 6 PEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVN 85 (621)
Q Consensus 6 ~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 85 (621)
...+.+|.++|+|++|+|+++ +||+|+.||.|+ |||..++.... .+..|...|.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~-----~l~s~s~Dg~v~--------------vWd~~~~~~~~-------~~~~~~~~v~ 110 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKR-----RIVSSSQDGKVI--------------VWDSFTTNKEH-------AVTMPCTWVM 110 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSS-----EEEEEETTSEEE--------------EEETTTCCEEE-------EEECSSSCCC
T ss_pred EEEecCCCCeEEEEEECCCCC-----EEEEEeCCCeEE--------------EEECCCCCcce-------EEecCCCCEE
Confidence 455678999999999999998 999999999999 88877665433 3667889999
Q ss_pred EEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q psy15549 86 VVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDL 164 (621)
Q Consensus 86 ~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~ 164 (621)
+++|+|+|.+|++|+ |+.+++|++....... .......+.+|...|.+++|+|++..|++++.|++|++||+.+++.+
T Consensus 111 ~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~ 189 (354)
T 2pbi_B 111 ACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN-MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL 189 (354)
T ss_dssp EEEECTTSSEEEEESTTSEEEEEECCCCTTCC-SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEECCCCCEEEEeeCCCCEEEEEEecccccc-ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE
Confidence 999999999999998 8899999987542211 11334556789999999999999999999999999999999988753
Q ss_pred CCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEE
Q psy15549 165 PEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP--TSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAW 242 (621)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp--d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~ 242 (621)
..+.+|...|.+++|+| ++++|++|+.||.|++||+++++++..+..|...|.+++|
T Consensus 190 ---------------------~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~ 248 (354)
T 2pbi_B 190 ---------------------QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY 248 (354)
T ss_dssp ---------------------EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred ---------------------EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence 66789999999999988 5789999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecccccc
Q psy15549 243 DPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLE 322 (621)
Q Consensus 243 sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~ 322 (621)
+|++.+|++++.|++|++||++.++.+..+... .....+.+++|+|+|.+|+++
T Consensus 249 ~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~---------------------~~~~~~~~~~~s~~g~~l~~g----- 302 (354)
T 2pbi_B 249 YPSGDAFASGSDDATCRLYDLRADREVAIYSKE---------------------SIIFGASSVDFSLSGRLLFAG----- 302 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCT---------------------TCCSCEEEEEECTTSSEEEEE-----
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC---------------------CcccceeEEEEeCCCCEEEEE-----
Confidence 999999999999999999999987765544211 112245677888877766654
Q ss_pred CCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCc
Q psy15549 323 NSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHAS 402 (621)
Q Consensus 323 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 402 (621)
+.|+.|++||+.+++
T Consensus 303 -----------------------------------------------------------------~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 303 -----------------------------------------------------------------YNDYTINVWDVLKGS 317 (354)
T ss_dssp -----------------------------------------------------------------ETTSCEEEEETTTCS
T ss_pred -----------------------------------------------------------------ECCCcEEEEECCCCc
Confidence 478999999999998
Q ss_pred eeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q psy15549 403 PFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIIS 440 (621)
Q Consensus 403 ~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~ 440 (621)
.+..+ .+|...|++++|+|||++|++|+.||+|++|+
T Consensus 318 ~~~~l-~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 318 RVSIL-FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEE-CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eEEEE-ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 88877 46999999999999999999999999999995
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.9e-44 Score=359.57 Aligned_cols=311 Identities=23% Similarity=0.365 Sum_probs=257.2
Q ss_pred eeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 7 EISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 7 ~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
..+.+|.++|++++|+|+++ +|++|+.||.|+ |||+.++.... .+..|...|.+
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~-----~l~s~s~D~~v~--------------iWd~~~~~~~~-------~~~~h~~~v~~ 113 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKN-----WIVSASQDGRLI--------------VWNALTSQKTH-------AIKLHCPWVME 113 (380)
T ss_dssp EEECCCSSCEEEEEECTTSS-----CEEEEETTSEEE--------------EEETTTTEEEE-------EEECCCTTCCC
T ss_pred ecccccccEEEEEEEcCCCC-----EEEEEeCCCeEE--------------EEECCCCccce-------EEecCCCCEEE
Confidence 45678999999999999998 999999999999 99987765433 47889999999
Q ss_pred EEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCC-CCEEEEEeCCCcEEEEEccCCCCC
Q psy15549 87 VRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN-GELLASGDDESTIIVWKQKTDQDL 164 (621)
Q Consensus 87 l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~-g~~l~s~s~dg~i~vwd~~~~~~~ 164 (621)
++|+|+|++|++|+ |+.+++|++...............+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++.+
T Consensus 114 ~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~ 193 (380)
T 3iz6_a 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI 193 (380)
T ss_dssp CEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE
T ss_pred EEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE
Confidence 99999999999998 8999999997643322233445678899999999999996 457999999999999999988754
Q ss_pred CCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECC-CCcEEEEeccCCcceEEEEE
Q psy15549 165 PEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP-TSTHLISGSVDNTAIMWDVH-KGKNLGILTEHKKFVQGVAW 242 (621)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-d~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~ 242 (621)
..+. .....+|...|.+++|++ ++++|++|+.|+.|++||++ .+..+..+.+|...|.+++|
T Consensus 194 ~~~~----------------~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~ 257 (380)
T 3iz6_a 194 SIFG----------------SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKF 257 (380)
T ss_dssp EEEC----------------CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEE
T ss_pred EEee----------------cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEE
Confidence 2210 011257999999999987 88999999999999999998 45778889999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecccccc
Q psy15549 243 DPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLE 322 (621)
Q Consensus 243 sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~ 322 (621)
+|++++|++++.||+|++||+++++.+..+..+... .......+.+++|+|+|++|++++
T Consensus 258 ~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~----------------~~~~~~~v~~~~~s~~g~~l~~g~---- 317 (380)
T 3iz6_a 258 FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR----------------NDNELPIVTSVAFSISGRLLFAGY---- 317 (380)
T ss_dssp CTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS----------------SCCSSCSCSEEEECSSSSEEEEEC----
T ss_pred ecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc----------------cccccCceEEEEECCCCCEEEEEE----
Confidence 999999999999999999999999887766432211 011223467888888887777655
Q ss_pred CCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCc
Q psy15549 323 NSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHAS 402 (621)
Q Consensus 323 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 402 (621)
.||.|++||+..++
T Consensus 318 ------------------------------------------------------------------~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 318 ------------------------------------------------------------------SNGDCYVWDTLLAE 331 (380)
T ss_dssp ------------------------------------------------------------------TTSCEEEEETTTCC
T ss_pred ------------------------------------------------------------------CCCCEEEEECCCCc
Confidence 67889999998888
Q ss_pred eeEEEe---cccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCc
Q psy15549 403 PFAFIA---NIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNE 445 (621)
Q Consensus 403 ~~~~~~---~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~ 445 (621)
.+..+. .+|...|++++|+|||++|++|+.||+|++|++...+
T Consensus 332 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 332 MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred eEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 776652 4699999999999999999999999999999988653
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-43 Score=348.83 Aligned_cols=321 Identities=21% Similarity=0.301 Sum_probs=237.5
Q ss_pred eeeecCCC-CeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEE
Q psy15549 7 EISWHNRD-PVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVN 85 (621)
Q Consensus 7 ~~~~~h~~-~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 85 (621)
..+..|.+ .|++++|+|+++ +||+|+.|+.|+ ||++..+..... .....+|...|.
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~-----~las~~~D~~i~--------------iw~~~~~~~~~~----~~~~~~h~~~v~ 65 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGT-----LLASCGGDRRIR--------------IWGTEGDSWICK----SVLSEGHQRTVR 65 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSS-----CEEEEETTSCEE--------------EEEEETTEEEEE----EEECSSCSSCEE
T ss_pred eeecCCCCCcEEEEEECCCCC-----EEEEEcCCCeEE--------------EEEcCCCcceee----eeeccccCCcEE
Confidence 34445666 999999999998 999999999999 888876532111 112468999999
Q ss_pred EEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q psy15549 86 VVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDL 164 (621)
Q Consensus 86 ~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~ 164 (621)
+++|+|+|++|++|+ |+.+++|+..... ......+.+|...|.+++|+|++++|++|+.|++|++||+.+....
T Consensus 66 ~~~~sp~g~~l~s~s~D~~v~iw~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 140 (345)
T 3fm0_A 66 KVAWSPCGNYLASASFDATTCIWKKNQDD-----FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY 140 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEECCC------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE
T ss_pred EEEECCCCCEEEEEECCCcEEEEEccCCC-----eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe
Confidence 999999999999998 8899999987652 2456778899999999999999999999999999999999876432
Q ss_pred CCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCc--EEEEeccCCcceEEEEE
Q psy15549 165 PEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGK--NLGILTEHKKFVQGVAW 242 (621)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~l~~ 242 (621)
.....+.+|...|.+++|+|++++|++++.|+.|++||+.++. +...+.+|...|.+++|
T Consensus 141 ------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~ 202 (345)
T 3fm0_A 141 ------------------ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202 (345)
T ss_dssp ------------------EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred ------------------EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEE
Confidence 1235678899999999999999999999999999999998875 45678899999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecccccc
Q psy15549 243 DPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLE 322 (621)
Q Consensus 243 sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~ 322 (621)
+|++++|++++.|++|++|+.........+. +....+....+....
T Consensus 203 sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~---- 248 (345)
T 3fm0_A 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVA------------------------------CSGSDPSWKCICTLS---- 248 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEEECTTCTTCCC------------------------------CC---CEEEEEEEEC----
T ss_pred CCCCCEEEEEeCCCeEEEeccccCCCCccce------------------------------eeccCCccceeEEec----
Confidence 9999999999999999999974322110000 000000000000000
Q ss_pred CCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCc
Q psy15549 323 NSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHAS 402 (621)
Q Consensus 323 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 402 (621)
..|...+..+.|+| .+..+++++.|+.|++|+.....
T Consensus 249 ---------------------------~~h~~~v~~v~~~~----------------~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 249 ---------------------------GFHSRTIYDIAWCQ----------------LTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp ---------------------------SSCSSCEEEEEECT----------------TTCCEEEEETTSCEEEEEECTTS
T ss_pred ---------------------------CCCCCcEEEEEEec----------------CCCEEEEEeCCCeEEEEEeCCCC
Confidence 01223334444443 34455666677778888765542
Q ss_pred --------eeEEEecccccceEEEEEcCCCC-eEEEEeCCCcEEEEEecCCcCCccc
Q psy15549 403 --------PFAFIANIHYTKLTDITWSSDGK-VLIASSTDGYCSIISFGDNEIGIPY 450 (621)
Q Consensus 403 --------~~~~~~~~h~~~v~~~~~spdg~-~l~s~s~dg~i~iw~~~~~~~~~~~ 450 (621)
.......+|...|++++|+|++. +||+|+.||+|++|++.+++....+
T Consensus 286 ~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp CTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred CcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 11222347999999999999984 9999999999999999987755443
No 11
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.8e-44 Score=363.16 Aligned_cols=307 Identities=18% Similarity=0.304 Sum_probs=269.5
Q ss_pred cccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcE
Q psy15549 75 SDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTI 153 (621)
Q Consensus 75 ~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i 153 (621)
..+.+|.+.|++++|+|++.+|++|+ |+.|++|++..+ .....+.+|...|.+++|+|++++|++|+.|++|
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC-------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 45789999999999999999999998 889999999877 5667888999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC
Q psy15549 154 IVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEH 233 (621)
Q Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 233 (621)
++||+.+.+.+ ..+.+|...|.+++|+|++++|++|+.|+.|++||+.++.++..+.+|
T Consensus 175 ~iwd~~~~~~~---------------------~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h 233 (410)
T 1vyh_C 175 KLWDFQGFECI---------------------RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 233 (410)
T ss_dssp CEEETTSSCEE---------------------ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEeCCCCcee---------------------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC
Confidence 99999887643 566799999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCe
Q psy15549 234 KKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQL 313 (621)
Q Consensus 234 ~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~ 313 (621)
...|.++.|+|++.+|++|+.|+.|++||+.+++....+.. +...|.+++|+|++.+
T Consensus 234 ~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~-----------------------h~~~v~~~~~~~~~~~ 290 (410)
T 1vyh_C 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE-----------------------HRHVVECISWAPESSY 290 (410)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-----------------------CSSCEEEEEECCSCGG
T ss_pred CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecC-----------------------CCceEEEEEEcCcccc
Confidence 99999999999999999999999999999999887766643 3456789999998875
Q ss_pred EEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcE
Q psy15549 314 LIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNI 393 (621)
Q Consensus 314 l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 393 (621)
...... .+.. ......++.++++++.|+.|
T Consensus 291 ~~~~~~-----~~~~---------------------------------------------~~~~~~~g~~l~sgs~D~~i 320 (410)
T 1vyh_C 291 SSISEA-----TGSE---------------------------------------------TKKSGKPGPFLLSGSRDKTI 320 (410)
T ss_dssp GGGGGC-----CSCC----------------------------------------------------CCEEEEEETTSEE
T ss_pred cchhhh-----cccc---------------------------------------------ccccCCCCCEEEEEeCCCeE
Confidence 433220 0000 00011145789999999999
Q ss_pred EEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCCcccCC
Q psy15549 394 LLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEPVRSED 473 (621)
Q Consensus 394 ~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 473 (621)
++||+.++.++..+. +|...|++++|+|+|++|++|+.||.|++||+.++++...+..|...+..+.+++++..+++++
T Consensus 321 ~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs 399 (410)
T 1vyh_C 321 KMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399 (410)
T ss_dssp EEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred EEEECCCCceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEe
Confidence 999999999888884 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHhcc
Q psy15549 474 KPRSAEQAKG 483 (621)
Q Consensus 474 ~~~~~~~w~~ 483 (621)
.|+.+++|+.
T Consensus 400 ~D~~i~vW~~ 409 (410)
T 1vyh_C 400 VDQTVKVWEC 409 (410)
T ss_dssp TTSEEEEEC-
T ss_pred CCCcEEEEeC
Confidence 9999999974
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.4e-42 Score=341.03 Aligned_cols=294 Identities=19% Similarity=0.269 Sum_probs=247.5
Q ss_pred ceeeecCCCCeEEEeccccc-cCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcE
Q psy15549 6 PEISWHNRDPVLSVDIQLKQ-EKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAV 84 (621)
Q Consensus 6 ~~~~~~h~~~v~~l~~spd~-~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V 84 (621)
...+.+|.++|++++|+|++ . +|++|+.|+.|+ +|++...... .......+.+|...|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~-----~l~s~s~D~~v~--------------~W~~~~~~~~--~~~~~~~~~~h~~~v 68 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPN-----LLLSASRDKTLI--------------SWKLTGDDQK--FGVPVRSFKGHSHIV 68 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTT-----EEEEEETTSEEE--------------EEEEEEETTE--EEEEEEEEECCSSCE
T ss_pred EEEEccccceEEEEEccCCCcc-----EEEEecCCccEE--------------EecCCCCCcc--ccccceEEeCCcccE
Confidence 34566899999999999976 5 999999999999 8888654321 112345688999999
Q ss_pred EEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCC
Q psy15549 85 NVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQD 163 (621)
Q Consensus 85 ~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~ 163 (621)
.+++|+|+|++|++|+ |+.|++||+..+ .....+.+|...|.+++|+|++.+|++|+.|++|++||+....
T Consensus 69 ~~~~~s~dg~~l~s~s~D~~v~~wd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~- 140 (319)
T 3frx_A 69 QDCTLTADGAYALSASWDKTLRLWDVATG-------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC- 140 (319)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE-
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCC-------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-
Confidence 9999999999999998 889999999887 6677889999999999999999999999999999999986432
Q ss_pred CCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC------CCEEEEEeCCCeEEEEECCCCcEEEEeccCCcce
Q psy15549 164 LPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT------STHLISGSVDNTAIMWDVHKGKNLGILTEHKKFV 237 (621)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 237 (621)
...+.+|...|.++.|+|. +..|++++.|+.|++||+++++....+.+|...|
T Consensus 141 ---------------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v 199 (319)
T 3frx_A 141 ---------------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199 (319)
T ss_dssp ---------------------EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCE
T ss_pred ---------------------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcE
Confidence 3567789999999999984 4589999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEec
Q psy15549 238 QGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAP 317 (621)
Q Consensus 238 ~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 317 (621)
.+++|+|++++|++++.||.|++||+.+++.+..+.. ...|.+++|+|++.+|+++
T Consensus 200 ~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------~~~v~~~~~sp~~~~la~~ 255 (319)
T 3frx_A 200 NTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA------------------------QDEVFSLAFSPNRYWLAAA 255 (319)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC------------------------CSCEEEEEECSSSSEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC------------------------CCcEEEEEEcCCCCEEEEE
Confidence 9999999999999999999999999999988776632 2347899999999888775
Q ss_pred cccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEe
Q psy15549 318 SGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYD 397 (621)
Q Consensus 318 s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 397 (621)
. ++.+++|+
T Consensus 256 ~-----------------------------------------------------------------------~~~i~v~~ 264 (319)
T 3frx_A 256 T-----------------------------------------------------------------------ATGIKVFS 264 (319)
T ss_dssp E-----------------------------------------------------------------------TTEEEEEE
T ss_pred c-----------------------------------------------------------------------CCCcEEEE
Confidence 5 22355555
Q ss_pred CCCCceeEEEe-------cccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCC
Q psy15549 398 TQHASPFAFIA-------NIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDN 444 (621)
Q Consensus 398 ~~~~~~~~~~~-------~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~ 444 (621)
+..+..+..+. ..|...+.+++|+|||++|++|+.||.|++|++.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 265 LDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 55544333332 235668999999999999999999999999999864
No 13
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.4e-43 Score=339.97 Aligned_cols=296 Identities=18% Similarity=0.310 Sum_probs=252.6
Q ss_pred CccccceeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccc
Q psy15549 1 MKCTIPEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRH 80 (621)
Q Consensus 1 m~~~~~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h 80 (621)
|+++......+|.+.|++++|+|+++ +|++|+.||.|+ +||+.++... ..+..|
T Consensus 1 ~~l~~~~~~~~h~~~V~~~~fsp~~~-----~l~s~~~dg~v~--------------lWd~~~~~~~-------~~~~~~ 54 (304)
T 2ynn_A 1 MKLDIKKTFSNRSDRVKGIDFHPTEP-----WVLTTLYSGRVE--------------LWNYETQVEV-------RSIQVT 54 (304)
T ss_dssp -CCCCEEEEEEECSCEEEEEECSSSS-----EEEEEETTSEEE--------------EEETTTTEEE-------EEEECC
T ss_pred CcceeEEeecCCCCceEEEEECCCCC-----EEEEEcCCCcEE--------------EEECCCCcee-------EEeecc
Confidence 78888888999999999999999998 999999999999 9998776543 347889
Q ss_pred cCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEcc
Q psy15549 81 QKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQK 159 (621)
Q Consensus 81 ~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~ 159 (621)
...|.+++|+|++++|++|+ |+.|++|++..+ ..+..+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus 55 ~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~ 127 (304)
T 2ynn_A 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG-------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127 (304)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGG
T ss_pred CCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC-------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECC
Confidence 99999999999999999998 888999999887 5677788999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCcce
Q psy15549 160 TDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP-TSTHLISGSVDNTAIMWDVHKGKNLGILT-EHKKFV 237 (621)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v 237 (621)
++.. ....+.+|...|.+++|+| ++.+|++|+.|+.|++||+.++.....+. .|...+
T Consensus 128 ~~~~--------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v 187 (304)
T 2ynn_A 128 NNWA--------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187 (304)
T ss_dssp GTTE--------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCE
T ss_pred CCcc--------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcE
Confidence 7643 2356789999999999999 67899999999999999998877665553 566789
Q ss_pred EEEEEcC--CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEE
Q psy15549 238 QGVAWDP--KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLI 315 (621)
Q Consensus 238 ~~l~~sp--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~ 315 (621)
..+.|+| ++.+|++++.|+.|++||+++++.+..+..+ ...|.+++|+|++.+|+
T Consensus 188 ~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h-----------------------~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-----------------------MSNVSFAVFHPTLPIII 244 (304)
T ss_dssp EEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC-----------------------SSCEEEEEECSSSSEEE
T ss_pred EEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC-----------------------CCCEEEEEECCCCCEEE
Confidence 9999987 7789999999999999999999888776533 34568888888877666
Q ss_pred eccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEE
Q psy15549 316 APSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILL 395 (621)
Q Consensus 316 ~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 395 (621)
+++ .||.|++
T Consensus 245 s~s----------------------------------------------------------------------~Dg~i~i 254 (304)
T 2ynn_A 245 SGS----------------------------------------------------------------------EDGTLKI 254 (304)
T ss_dssp EEE----------------------------------------------------------------------TTSCEEE
T ss_pred EEc----------------------------------------------------------------------CCCeEEE
Confidence 544 7899999
Q ss_pred EeCCCCceeEEEecccccceEEEEEcCCCC--eEEEEeCCCcEEEEEecCC
Q psy15549 396 YDTQHASPFAFIANIHYTKLTDITWSSDGK--VLIASSTDGYCSIISFGDN 444 (621)
Q Consensus 396 wd~~~~~~~~~~~~~h~~~v~~~~~spdg~--~l~s~s~dg~i~iw~~~~~ 444 (621)
||+.+++.+..+. .|...+.+++|+|++. +|++|+.|| +.+|++...
T Consensus 255 Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 255 WNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp EETTTCCEEEEEC-CSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred EECCCCceeeecc-CCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence 9999999888884 5888999999999885 577776555 778887653
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.5e-43 Score=343.86 Aligned_cols=288 Identities=22% Similarity=0.337 Sum_probs=257.5
Q ss_pred ccccccCcEEEEEEccC----CCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCC
Q psy15549 76 DLSRHQKAVNVVRFSPN----GELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE 150 (621)
Q Consensus 76 ~~~~h~~~V~~l~~spd----g~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~d 150 (621)
.+.+|.+.|.+++|+|+ +.+|++|+ |+.|+||++.... ......+.+|...|.+++|++++.++++++.|
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~-----~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER-----LDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC-----eeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 46789999999999985 67899988 9999999998652 23455688999999999999999999999999
Q ss_pred CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q psy15549 151 STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGIL 230 (621)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~ 230 (621)
++|++||+.+++.+ ..+..|...+.+++|+|++++|++++.||.|++|++.+++....+
T Consensus 102 ~~i~lWd~~~~~~~---------------------~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~ 160 (321)
T 3ow8_A 102 AHIRLWDLENGKQI---------------------KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL 160 (321)
T ss_dssp SEEEEEETTTTEEE---------------------EEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred CcEEEEECCCCCEE---------------------EEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe
Confidence 99999999988653 556778888999999999999999999999999999999999999
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCC
Q psy15549 231 TEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPD 310 (621)
Q Consensus 231 ~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd 310 (621)
..|...|.+++|+|++++|++++.||.|++||+++++.+..+..+ ...|.+++|+|+
T Consensus 161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-----------------------~~~v~~l~~spd 217 (321)
T 3ow8_A 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH-----------------------AMPIRSLTFSPD 217 (321)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-----------------------SSCCCEEEECTT
T ss_pred cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-----------------------CCceeEEEEcCC
Confidence 999999999999999999999999999999999999887776533 345688999999
Q ss_pred CCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcC
Q psy15549 311 GQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATE 390 (621)
Q Consensus 311 g~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 390 (621)
+++|++++ .|
T Consensus 218 ~~~l~s~s----------------------------------------------------------------------~d 227 (321)
T 3ow8_A 218 SQLLVTAS----------------------------------------------------------------------DD 227 (321)
T ss_dssp SCEEEEEC----------------------------------------------------------------------TT
T ss_pred CCEEEEEc----------------------------------------------------------------------CC
Confidence 88877765 67
Q ss_pred CcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCCcc
Q psy15549 391 NNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEPVR 470 (621)
Q Consensus 391 g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (621)
+.|++||+.+++....+ .+|...|.+++|+|+|++|++++.||+|++||+.++++...+..|...+..+.+++++..++
T Consensus 228 g~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~ 306 (321)
T 3ow8_A 228 GYIKIYDVQHANLAGTL-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIV 306 (321)
T ss_dssp SCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CeEEEEECCCcceeEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence 89999999998888777 56999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccHHHhcc
Q psy15549 471 SEDKPRSAEQAKG 483 (621)
Q Consensus 471 s~~~~~~~~~w~~ 483 (621)
+++.|+.+++|+.
T Consensus 307 s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 307 SVGDDQEIHIYDC 319 (321)
T ss_dssp EEETTCCEEEEEC
T ss_pred EEeCCCeEEEEeC
Confidence 9999999999985
No 15
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6e-43 Score=407.35 Aligned_cols=401 Identities=18% Similarity=0.195 Sum_probs=316.2
Q ss_pred eeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEE
Q psy15549 8 ISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVV 87 (621)
Q Consensus 8 ~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l 87 (621)
....|.+.|++++|+|+++ +||+|+.||.|+ +||+.++.... .+.+|.+.|.++
T Consensus 610 ~~~~h~~~v~~~~~s~~~~-----~l~s~~~d~~i~--------------vw~~~~~~~~~-------~~~~h~~~v~~~ 663 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQ-----RIASCGADKTLQ--------------VFKAETGEKLL-------DIKAHEDEVLCC 663 (1249)
T ss_dssp EECCCSSCEEEEEECTTSS-----EEEEEETTSCEE--------------EEETTTCCEEE-------EECCCSSCEEEE
T ss_pred EEecccccEEEEEECCCCC-----EEEEEeCCCeEE--------------EEECCCCCEEE-------EeccCCCCEEEE
Confidence 3457999999999999999 999999999999 99988776433 478999999999
Q ss_pred EEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECC--CCCEEEEEeCCCcEEEEEccCCCCC
Q psy15549 88 RFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP--NGELLASGDDESTIIVWKQKTDQDL 164 (621)
Q Consensus 88 ~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp--~g~~l~s~s~dg~i~vwd~~~~~~~ 164 (621)
+|+|+|++|++++ |+.|++|++..+ ..+..+.+|...|.+++|+| ++.++++|+.|+.|++||+.++...
T Consensus 664 ~~s~~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~ 736 (1249)
T 3sfz_A 664 AFSSDDSYIATCSADKKVKIWDSATG-------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736 (1249)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE
T ss_pred EEecCCCEEEEEeCCCeEEEEECCCC-------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh
Confidence 9999999999988 888999999887 66778889999999999999 5568999999999999999988743
Q ss_pred CCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------
Q psy15549 165 PEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGIL-------------- 230 (621)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------- 230 (621)
..+.+|...|++++|+|++++|++++.||.|++||+.++.....+
T Consensus 737 ---------------------~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1249)
T 3sfz_A 737 ---------------------NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPE 795 (1249)
T ss_dssp ---------------------EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------
T ss_pred ---------------------heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccc
Confidence 667799999999999999999999999999999999876544332
Q ss_pred -----------------------------------------ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceee
Q psy15549 231 -----------------------------------------TEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVI 269 (621)
Q Consensus 231 -----------------------------------------~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 269 (621)
.+|...|.+++|+|+++++++++.||.|++||+.++..+
T Consensus 796 ~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~ 875 (1249)
T 3sfz_A 796 DVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV 875 (1249)
T ss_dssp CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEE
T ss_pred cccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 157788999999999999999999999999999999888
Q ss_pred eecccCCCCCCCccc----------cccccccccccC-------------------------------------------
Q psy15549 270 SRACRSKLPVDSSHE----------LFDKVVPLFHDD------------------------------------------- 296 (621)
Q Consensus 270 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~------------------------------------------- 296 (621)
..+..+...+....- ..+..+.+|...
T Consensus 876 ~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1249)
T 3sfz_A 876 ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 955 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCC
T ss_pred eecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcce
Confidence 777666543321100 011122222100
Q ss_pred ---CcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeeccc---CCCc------------------------
Q psy15549 297 ---TMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACL---NKPA------------------------ 346 (621)
Q Consensus 297 ---~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~---~~~~------------------------ 346 (621)
.....+.+++|+|+++++++++ .++.+.+|+.......... ...+
T Consensus 956 ~~~~~~~~i~~~~~sp~g~~l~~g~-----~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A 956 IDYLPEAQVSCCCLSPHLEYVAFGD-----EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030 (1249)
T ss_dssp EEEECCSCEEEEEECTTSSEEEEEE-----TTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEE
T ss_pred EEEcccCcEEEEEEcCCCCEEEEEc-----CCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 0123456666666666666666 5666666664322111110 0000
Q ss_pred -------eecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEE
Q psy15549 347 -------VCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDIT 419 (621)
Q Consensus 347 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~ 419 (621)
.....+...+.++.+ .++..+++++.|+.|++||+.+++.+..+ .+|...|++++
T Consensus 1031 d~~~~~~~~~~~~~~~v~~~~~-----------------~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~ 1092 (1249)
T 3sfz_A 1031 NWQTGDYVFLQAHQETVKDFRL-----------------LQDSRLLSWSFDGTVKVWNVITGRIERDF-TCHQGTVLSCA 1092 (1249)
T ss_dssp ETTTTEEECCBCCSSCEEEEEE-----------------CSSSEEEEEESSSEEEEEETTTTCCCEEE-ECCSSCCCCEE
T ss_pred ECCCCceEEEecCCCcEEEEEE-----------------cCCCcEEEEECCCcEEEEECCCCceeEEE-cccCCcEEEEE
Confidence 011122222223222 34577899999999999999999988888 46999999999
Q ss_pred EcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCCcccCCCcccHHHhcccC
Q psy15549 420 WSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEPVRSEDKPRSAEQAKGEG 485 (621)
Q Consensus 420 ~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~~~~ 485 (621)
|+|+|++|++++.||+|++|++.++.....+..|...+..+.+++++..+++++.|+.+++|++..
T Consensus 1093 ~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1093 ISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp ECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSS
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 999999999999999999999999999999999999999999999999999999999999999664
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.7e-43 Score=348.24 Aligned_cols=300 Identities=15% Similarity=0.214 Sum_probs=234.1
Q ss_pred ecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEE
Q psy15549 10 WHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRF 89 (621)
Q Consensus 10 ~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 89 (621)
..|.+.|++|+|||||+ +||+|+.|.. ++||.. +++|+...+..... +.....+|...|.+++|
T Consensus 39 ~~H~~~V~~v~fSpDG~-----~las~s~d~~-~~wd~~-------v~~~~~~~~~~~~~---~~~~~~~~~~~V~~~~~ 102 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGA-----LLLAASSLSS-RTWGGS-------IWVFKDPEGAPNES---LCTAGVQTEAGVTDVAW 102 (357)
T ss_dssp -CCCSEEEEEEECSSSC-----EEEEEECSSS-SSCCEE-------EEEESSCC---CGG---GCSEEEECSSCEEEEEE
T ss_pred ccccCCEEEEEECCCCC-----EEEEEcCCCC-ccccCe-------EEEEECCCCCccee---EecccCCCCCCEEEEEE
Confidence 45899999999999999 9999998432 333211 11777766543222 22345678999999999
Q ss_pred ccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q psy15549 90 SPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPS 169 (621)
Q Consensus 90 spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 169 (621)
+|++++|+++.++.|+||++..+.... .......+|...|++++|+|++++|++|+.|+.|++||+.+++.+
T Consensus 103 s~d~~~l~~s~dg~v~lWd~~~~~~~~---~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~----- 174 (357)
T 4g56_B 103 VSEKGILVASDSGAVELWEILEKESLL---VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL----- 174 (357)
T ss_dssp ETTTEEEEEETTSCEEEC--------C---CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEE-----
T ss_pred cCCCCEEEEECCCEEEEeeccccceeE---EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE-----
Confidence 999998888889999999998763211 112234579999999999999999999999999999999988643
Q ss_pred CCcccccccccceeeeeeecCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEec--cCCcceEEEEEcCC-
Q psy15549 170 SNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTST-HLISGSVDNTAIMWDVHKGKNLGILT--EHKKFVQGVAWDPK- 245 (621)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~sp~- 245 (621)
..+.+|...|++++|+|++. ++++++.||.|++||++++++...+. .+...+.+++|+|+
T Consensus 175 ----------------~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 238 (357)
T 4g56_B 175 ----------------KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEK 238 (357)
T ss_dssp ----------------EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTS
T ss_pred ----------------EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcc
Confidence 66789999999999999874 78999999999999999988766553 46778999999997
Q ss_pred CCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCC-eEEeccccccCC
Q psy15549 246 NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQ-LLIAPSGCLENS 324 (621)
Q Consensus 246 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~-~l~~~s~~~~~~ 324 (621)
+.+|++|+.|+.|++||+++++.+..+.. +...|.+++|+|++. +|+
T Consensus 239 ~~~la~g~~d~~i~~wd~~~~~~~~~~~~-----------------------~~~~v~~l~~sp~~~~~la--------- 286 (357)
T 4g56_B 239 DDTFACGDETGNVSLVNIKNPDSAQTSAV-----------------------HSQNITGLAYSYHSSPFLA--------- 286 (357)
T ss_dssp TTEEEEEESSSCEEEEESSCGGGCEEECC-----------------------CSSCEEEEEECSSSSCCEE---------
T ss_pred cceEEEeecccceeEEECCCCcEeEEEec-----------------------cceeEEEEEEcCCCCCEEE---------
Confidence 46889999999999999999887666542 344578899998864 344
Q ss_pred CCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCcee
Q psy15549 325 DSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPF 404 (621)
Q Consensus 325 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 404 (621)
+++.|++|+|||+.+++.+
T Consensus 287 -------------------------------------------------------------sgs~D~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 287 -------------------------------------------------------------SISEDCTVAVLDADFSEVF 305 (357)
T ss_dssp -------------------------------------------------------------EEETTSCEEEECTTSCEEE
T ss_pred -------------------------------------------------------------EEeCCCEEEEEECCCCcEe
Confidence 3457899999999998877
Q ss_pred EEEecccccceEEEEEcC-CCCeEEEEeCCCcEEEEEecCC
Q psy15549 405 AFIANIHYTKLTDITWSS-DGKVLIASSTDGYCSIISFGDN 444 (621)
Q Consensus 405 ~~~~~~h~~~v~~~~~sp-dg~~l~s~s~dg~i~iw~~~~~ 444 (621)
..+ +|...|++++|+| |+++|++++.||+|++|++.+.
T Consensus 306 ~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 306 RDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 654 5999999999998 8999999999999999999754
No 17
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-42 Score=341.58 Aligned_cols=302 Identities=17% Similarity=0.236 Sum_probs=232.8
Q ss_pred ecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEE
Q psy15549 10 WHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRF 89 (621)
Q Consensus 10 ~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 89 (621)
..|...|.+++|+|||+ +|++++ |+.+++||.. +|.+........ .........|...|.+++|
T Consensus 27 ~~~~~~v~~~~fs~dG~-----~l~~~s-d~~~r~Wd~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~ 90 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGA-----LLLGAS-SLSGRCWAGS---------LWLFKDPCAAPN-EGFCSAGVQTEAGVADLTW 90 (344)
T ss_dssp SSCCSEEEEEEECTTSC-----EEEEEE-CCSSSCCCEE---------EEEESSGGGTTC-GGGCSEEEEESSCEEEEEE
T ss_pred ccccCCEEEEEECCCCC-----EEEEEe-CCceEEeece---------eeeeccccccCC-cceeeeeeccCCCEEEEEE
Confidence 35677899999999998 888877 7788855432 333322211110 0011123346778999999
Q ss_pred ccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q psy15549 90 SPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPS 169 (621)
Q Consensus 90 spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 169 (621)
+|++.+++++.|+.|+||++..+... ......+.+|...|++++|+|+|++|++|+.|++|++||+.+++.+
T Consensus 91 s~d~~l~~~s~dg~v~lWd~~~~~~~---~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~----- 162 (344)
T 4gqb_B 91 VGERGILVASDSGAVELWELDENETL---IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL----- 162 (344)
T ss_dssp ETTTEEEEEETTSEEEEEEECTTSSC---EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----
T ss_pred eCCCeEEEEECCCEEEEEeccCCCce---eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE-----
Confidence 99976555555999999999876421 1222345689999999999999999999999999999999988753
Q ss_pred CCcccccccccceeeeeeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEec--cCCcceEEEEEcCC-
Q psy15549 170 SNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTS-THLISGSVDNTAIMWDVHKGKNLGILT--EHKKFVQGVAWDPK- 245 (621)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~-~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~sp~- 245 (621)
..+.+|...|++++|+|++ .+|++++.|+.|++||+++++....+. .+...+.+++|+|+
T Consensus 163 ----------------~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 226 (344)
T 4gqb_B 163 ----------------SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ 226 (344)
T ss_dssp ----------------EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSC
T ss_pred ----------------EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCC
Confidence 6778999999999999988 478999999999999999999888774 35567899999995
Q ss_pred CCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCC-eEEeccccccCC
Q psy15549 246 NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQ-LLIAPSGCLENS 324 (621)
Q Consensus 246 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~-~l~~~s~~~~~~ 324 (621)
+++|++|+.||.|++||+++++.+..+.. +...|++++|+|++. +|++
T Consensus 227 ~~~l~sg~~dg~v~~wd~~~~~~~~~~~~-----------------------h~~~v~~v~fsp~g~~~las-------- 275 (344)
T 4gqb_B 227 SEVFVFGDENGTVSLVDTKSTSCVLSSAV-----------------------HSQCVTGLVFSPHSVPFLAS-------- 275 (344)
T ss_dssp TTEEEEEETTSEEEEEESCC--CCEEEEC-----------------------CSSCEEEEEECSSSSCCEEE--------
T ss_pred CcceEEeccCCcEEEEECCCCcEEEEEcC-----------------------CCCCEEEEEEccCCCeEEEE--------
Confidence 57889999999999999999888776653 345678999999874 4444
Q ss_pred CCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCcee
Q psy15549 325 DSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPF 404 (621)
Q Consensus 325 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 404 (621)
++.|++|+|||+.+++.+
T Consensus 276 --------------------------------------------------------------gs~D~~i~vwd~~~~~~~ 293 (344)
T 4gqb_B 276 --------------------------------------------------------------LSEDCSLAVLDSSLSELF 293 (344)
T ss_dssp --------------------------------------------------------------EETTSCEEEECTTCCEEE
T ss_pred --------------------------------------------------------------EeCCCeEEEEECCCCcEE
Confidence 457899999999988765
Q ss_pred EEEecccccceEEEEEcCCCC-eEEEEeCCCcEEEEEecCCcC
Q psy15549 405 AFIANIHYTKLTDITWSSDGK-VLIASSTDGYCSIISFGDNEI 446 (621)
Q Consensus 405 ~~~~~~h~~~v~~~~~spdg~-~l~s~s~dg~i~iw~~~~~~~ 446 (621)
. + .+|...|++++|+|+++ +|++++.||+|++|++.+..+
T Consensus 294 ~-~-~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 294 R-S-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp E-E-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred E-E-cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 4 3 47999999999999987 567899999999999987554
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.1e-42 Score=340.46 Aligned_cols=299 Identities=22% Similarity=0.277 Sum_probs=238.2
Q ss_pred ceeeecCCCCeEEEec-----cc-cccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeecccccc
Q psy15549 6 PEISWHNRDPVLSVDI-----QL-KQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSR 79 (621)
Q Consensus 6 ~~~~~~h~~~v~~l~~-----sp-d~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~ 79 (621)
...+.+|.++|++++| ++ +++ +||+|+.|+.|+ +|++...............+.+
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~-----~l~sgs~D~~v~--------------iWd~~~~~~~~~~~~~~~~l~~ 74 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSP-----VLISGSRDKTVM--------------IWKLYEEEQNGYFGIPHKALTG 74 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCC-----EEEEEETTSCEE--------------EEEECSSCCSSBSEEEEEEECC
T ss_pred eeeeccchhhhhheeeEEEeecCCCCC-----EEEEEcCCCEEE--------------EEECCcCCcccccccccchhcc
Confidence 3456789999999999 66 887 999999999999 8888755432222233456889
Q ss_pred ccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q psy15549 80 HQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQ 158 (621)
Q Consensus 80 h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~ 158 (621)
|...|.+++|+|++.+|++|+ |+.|++|++..+ .....+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus 75 h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~-------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG-------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp CSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS-------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 999999999999999999998 889999999877 566778899999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCC----------CEEEEEeCCCeEEEEECCCCcEEE
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTS----------THLISGSVDNTAIMWDVHKGKNLG 228 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~----------~~l~s~~~dg~i~vwd~~~~~~~~ 228 (621)
...... . .....+|...|.+++|+|++ .+|++++.|+.|++|| .+.+...
T Consensus 148 ~~~~~~-~------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~ 207 (343)
T 2xzm_R 148 LGECKF-S------------------SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRY 207 (343)
T ss_dssp SSCEEE-E------------------CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEE
T ss_pred cCCcee-e------------------eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeE
Confidence 743211 0 01223788999999999987 7899999999999999 4667778
Q ss_pred EeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCce-eeeecccCCCCCCCccccccccccccccCCcccceeeeee
Q psy15549 229 ILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKK-VISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTF 307 (621)
Q Consensus 229 ~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 307 (621)
.+.+|...|.+++|+|+|++|++|+.||.|++||+.... ....+ .....|.+++|
T Consensus 208 ~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~------------------------~~~~~v~~v~~ 263 (343)
T 2xzm_R 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF------------------------DAGSTINQIAF 263 (343)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE------------------------ECSSCEEEEEE
T ss_pred EEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee------------------------cCCCcEEEEEE
Confidence 888999999999999999999999999999999985432 22111 11234788999
Q ss_pred cCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEE
Q psy15549 308 SPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAV 387 (621)
Q Consensus 308 spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (621)
+|++.+++++
T Consensus 264 sp~~~~la~~---------------------------------------------------------------------- 273 (343)
T 2xzm_R 264 NPKLQWVAVG---------------------------------------------------------------------- 273 (343)
T ss_dssp CSSSCEEEEE----------------------------------------------------------------------
T ss_pred CCCCCEEEEE----------------------------------------------------------------------
Confidence 9988776543
Q ss_pred EcCCcEEEEeCCCCceeE--EEe----------cccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCc
Q psy15549 388 ATENNILLYDTQHASPFA--FIA----------NIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNE 445 (621)
Q Consensus 388 ~~dg~i~iwd~~~~~~~~--~~~----------~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~ 445 (621)
.|+.|++||+.+++... .+. .+|...|++++|+|+|++|++|+.||.|++|++.++.
T Consensus 274 -~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 274 -TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp -ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred -CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 23445555555443322 111 2577889999999999999999999999999998653
No 19
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-42 Score=384.08 Aligned_cols=426 Identities=14% Similarity=0.148 Sum_probs=292.2
Q ss_pred eeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEE
Q psy15549 8 ISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVV 87 (621)
Q Consensus 8 ~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l 87 (621)
...+|.+.|++|+|+|+++ +||+|+.||.|+ ||+....+... ...|...|.++
T Consensus 12 ~~~gh~~~V~~lafspdg~-----~lAsgs~Dg~I~--------------lw~~~~~~~~~--------~~~~~~~V~~l 64 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQN-----LLAIATVTGEVH--------------IYGQQQVEVVI--------KLEDRSAIKEM 64 (902)
T ss_dssp EEEECSSCEEEEEEETTTT-----EEEEEETTSEEE--------------EECSTTCEEEE--------ECSSCCCEEEE
T ss_pred cccCCCCCcEEEEECCCCC-----EEEEEeCCCEEE--------------EEeCCCcEEEE--------EcCCCCCEEEE
Confidence 4567899999999999999 999999999999 88876543211 23478899999
Q ss_pred EEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC
Q psy15549 88 RFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPE 166 (621)
Q Consensus 88 ~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~ 166 (621)
+|+| |++|++++ |+.|++|++..+ ..+..+. |...|++++|+|++++|++|+.||.|++||+.++... .
T Consensus 65 ~fsp-g~~L~S~s~D~~v~lWd~~~~-------~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~ 134 (902)
T 2oaj_A 65 RFVK-GIYLVVINAKDTVYVLSLYSQ-------KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-S 134 (902)
T ss_dssp EEET-TTEEEEEETTCEEEEEETTTC-------SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-E
T ss_pred EEcC-CCEEEEEECcCeEEEEECCCC-------cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-c
Confidence 9999 88888887 889999999876 3444443 6689999999999999999999999999999876531 0
Q ss_pred CCCCCcccccccccceeeeeeecCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEeccC------------
Q psy15549 167 FPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT-STHLISGSVDNTAIMWDVHKGKNLGILTEH------------ 233 (621)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------------ 233 (621)
+.. ...|.....+.+|...|++++|+|+ +..|++|+.||.| +||+++++.+..+..|
T Consensus 135 ~~i---------~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 135 FKL---------DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSE 204 (902)
T ss_dssp EEE---------CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCC
T ss_pred cee---------ccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccc
Confidence 000 0000000234679999999999996 5789999999999 9999999988888765
Q ss_pred ------CcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeee--cccCCCCCCCccccccccccccccCCcccceeee
Q psy15549 234 ------KKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISR--ACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRL 305 (621)
Q Consensus 234 ------~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 305 (621)
...|.+++|+|+|++|++++.||.|++||+++++.+.. +......... .. .......+...|.++
T Consensus 205 ~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~-~~------~~~~~~~~~~~V~~v 277 (902)
T 2oaj_A 205 KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ-PD------YIRDSSTNAAKISKV 277 (902)
T ss_dssp CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCC-TT------CCCCCSSCCCEEEEE
T ss_pred ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCC-Cc------CCCCCccccCCeeEE
Confidence 46799999999999999999999999999999887653 2100000000 00 000000123356777
Q ss_pred eec----CCC-CeEEeccccccCCCCCCcceeeee-----------------------eeeeccc---------------
Q psy15549 306 TFS----PDG-QLLIAPSGCLENSDSTRKPISVTH-----------------------VFTRACL--------------- 342 (621)
Q Consensus 306 ~~s----pdg-~~l~~~s~~~~~~d~~i~~~~~~~-----------------------~~~~~~~--------------- 342 (621)
+|+ |++ .+|++++.........+.+|++.. .+.....
T Consensus 278 ~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~ 357 (902)
T 2oaj_A 278 YWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPY 357 (902)
T ss_dssp EEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSH
T ss_pred EEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCC
Confidence 774 443 334444311000112444444210 0000000
Q ss_pred ----C-----------C------------------CceecCCcccceeeeecccee---------------eecC---CC
Q psy15549 343 ----N-----------K------------------PAVCLPSLQYYSVAVKCCPVL---------------FELK---PS 371 (621)
Q Consensus 343 ----~-----------~------------------~~~~~~~~~~~~~~~~~~~~~---------------~~~~---~~ 371 (621)
. . ....+..+...+.++.+.+.- ..+. ..
T Consensus 358 ~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~ 437 (902)
T 2oaj_A 358 FAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRT 437 (902)
T ss_dssp HHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCC
T ss_pred cCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCC
Confidence 0 0 000111122223333322100 0000 00
Q ss_pred CCCCCccCCCcEEEEEEcCCcEEEEeCCCCcee----EEEe------cccccceEEEEEcCCCCeEEEEeCCCcEEEEEe
Q psy15549 372 DDKPLFKLPYRIVIAVATENNILLYDTQHASPF----AFIA------NIHYTKLTDITWSSDGKVLIASSTDGYCSIISF 441 (621)
Q Consensus 372 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~------~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~ 441 (621)
.....|+++++.+++++.|++|++||+.++... .... .+|...|++++|+|||++||+|+.||+|+||++
T Consensus 438 v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~ 517 (902)
T 2oaj_A 438 KRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKY 517 (902)
T ss_dssp CCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEe
Confidence 112345678899999999999999999887532 1111 168889999999999999999999999999999
Q ss_pred cCCc---------------------------------------------CCcccCCCCCcccccCCCCCCCCcccCCCcc
Q psy15549 442 GDNE---------------------------------------------IGIPYVPPSGEESKENDPTKGEPVRSEDKPR 476 (621)
Q Consensus 442 ~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 476 (621)
.+++ +...+..|...+..+.|+|+| .+++++.|+
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~ 596 (902)
T 2oaj_A 518 EVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAG 596 (902)
T ss_dssp EECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTS
T ss_pred cCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCC
Confidence 9773 245567788999999999999 999999999
Q ss_pred cHHHhcccCccc
Q psy15549 477 SAEQAKGEGKVL 488 (621)
Q Consensus 477 ~~~~w~~~~~~~ 488 (621)
.|++|++++..+
T Consensus 597 tv~lwd~~~~~~ 608 (902)
T 2oaj_A 597 SLMLIDRRGPAI 608 (902)
T ss_dssp EEEEEETTTTEE
T ss_pred cEEEEECCCCeE
Confidence 999999877543
No 20
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-41 Score=334.14 Aligned_cols=311 Identities=19% Similarity=0.324 Sum_probs=228.0
Q ss_pred ccceeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeecccc-cc-cc
Q psy15549 4 TIPEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDL-SR-HQ 81 (621)
Q Consensus 4 ~~~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~-~~-h~ 81 (621)
+....+..|.++|++++|+|+ +||+|+.|+.|+ +|++..+... ....+ .+ |.
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~-------~las~~~D~~i~--------------lw~~~~~~~~-----~~~~~~~~~h~ 58 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG-------ILATGSTDRKIK--------------LVSVKYDDFT-----LIDVLDETAHK 58 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT-------EEEEEESSSCEE--------------EEECSSSCCE-----EEEEECTTCCC
T ss_pred ccceeeccCCCceeeeccCCC-------EEEEEcCCCEEE--------------EEEecCCCeE-----EEEEEecCCcc
Confidence 344566789999999999986 899999999999 8888754221 12223 34 99
Q ss_pred CcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccC
Q psy15549 82 KAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKT 160 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~ 160 (621)
..|.+++|+|++++|++|+ |+.|+||++...............+.+|...|.+++|+|++++|++|+.|++|++||+..
T Consensus 59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 9999999999999999998 899999998643211112245667889999999999999999999999999999999954
Q ss_pred CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC--cEEEEeccCCcceE
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKG--KNLGILTEHKKFVQ 238 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~ 238 (621)
.... +.....+.+|...|.+++|+|++.+|++++.|+.|++||+.++ +++..+.+|...|.
T Consensus 139 ~~~~-----------------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~ 201 (330)
T 2hes_X 139 SGEE-----------------YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVW 201 (330)
T ss_dssp TCCC-----------------CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred CCCC-----------------eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEE
Confidence 3211 1123667899999999999999999999999999999999876 67888999999999
Q ss_pred EEEEcCC--CCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccc-cCCcccceeeeeecCCCCeEE
Q psy15549 239 GVAWDPK--NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFH-DDTMKSFFRRLTFSPDGQLLI 315 (621)
Q Consensus 239 ~l~~sp~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~spdg~~l~ 315 (621)
+++|+|+ +.+|++++.|++|++||+..+...... ....... ...+...|.+++|+++
T Consensus 202 ~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~---------------~~~~~~~~~~~h~~~v~~v~~s~~----- 261 (330)
T 2hes_X 202 SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ---------------EWVCEAILPDVHKRQVYNVAWGFN----- 261 (330)
T ss_dssp EEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE---------------EEEEEEECCSCCSSCEEEEEECTT-----
T ss_pred EEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc---------------eeEEeeecccccccceEEEEEcCC-----
Confidence 9999998 778999999999999998754210000 0000000 0112334455555433
Q ss_pred eccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEE
Q psy15549 316 APSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILL 395 (621)
Q Consensus 316 ~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 395 (621)
+.|++++.||.|++
T Consensus 262 ------------------------------------------------------------------~~l~s~~~dg~v~i 275 (330)
T 2hes_X 262 ------------------------------------------------------------------GLIASVGADGVLAV 275 (330)
T ss_dssp ------------------------------------------------------------------SCEEEEETTSCEEE
T ss_pred ------------------------------------------------------------------CEEEEEeCCCEEEE
Confidence 34566668889999
Q ss_pred EeCCCCc--eeEEEeccccc-ceEEEEEcC--CCCeEEEEeCCCcEEEEEecC
Q psy15549 396 YDTQHAS--PFAFIANIHYT-KLTDITWSS--DGKVLIASSTDGYCSIISFGD 443 (621)
Q Consensus 396 wd~~~~~--~~~~~~~~h~~-~v~~~~~sp--dg~~l~s~s~dg~i~iw~~~~ 443 (621)
||..++. .+.....+|.. .|.+++|+| ++++||+|+.||+|+||++.+
T Consensus 276 w~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 276 YEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 9987764 33333346776 899999999 789999999999999999864
No 21
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.7e-42 Score=368.41 Aligned_cols=406 Identities=15% Similarity=0.133 Sum_probs=313.4
Q ss_pred ceeeecCCCC-eEEEeccc--cccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccc-cccceeecccccccc
Q psy15549 6 PEISWHNRDP-VLSVDIQL--KQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERES-GIANVEFASDLSRHQ 81 (621)
Q Consensus 6 ~~~~~~h~~~-v~~l~~sp--d~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~-~~~~~~~~~~~~~h~ 81 (621)
......|.+. |++++|+| +++ +||+|+.||.|+ +|++.++.. ..........+..|.
T Consensus 56 ~~~~~~h~~~~v~~~~~sp~~~~~-----~l~s~~~dg~v~--------------vw~~~~~~~~~~~~~~~~~~~~~~~ 116 (615)
T 1pgu_A 56 VVQFTGHGSSVVTTVKFSPIKGSQ-----YLCSGDESGKVI--------------VWGWTFDKESNSVEVNVKSEFQVLA 116 (615)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCC-----EEEEEETTSEEE--------------EEEEEEEGGGTEEEEEEEEEEECCS
T ss_pred ceEEecCCCceEEEEEECcCCCCC-----EEEEecCCCEEE--------------EEeCCCCcccccccccccchhhccc
Confidence 3455678899 99999999 998 999999999999 998865410 000122344578899
Q ss_pred CcEEEEEEccCCCEEEEEcCC-----ceEEEEeccCccccccceecccccccCCCeEEEEECCCCC-EEEEEeCCCcEEE
Q psy15549 82 KAVNVVRFSPNGELLASGDDV-----GKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE-LLASGDDESTIIV 155 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~d~-----~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~-~l~s~s~dg~i~v 155 (621)
..|.+++|+|++++|++++++ .|.+|+ .+ .....+.+|...|.+++|+|+++ +|++++.|+.|++
T Consensus 117 ~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~v 187 (615)
T 1pgu_A 117 GPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SG-------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 187 (615)
T ss_dssp SCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TC-------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred ccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CC-------CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEE
Confidence 999999999999999998843 567776 33 45667889999999999999998 8999999999999
Q ss_pred EEccCCCCCCCCCCCCcccccccccceeeeeeecCCCC---CeEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEe-
Q psy15549 156 WKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLE---DVYDISWSPT-STHLISGSVDNTAIMWDVHKGKNLGIL- 230 (621)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~- 230 (621)
||+.+.+. ...+.+|.. .|.+++|+|+ +++|++++.||.|++||+.+++.+..+
T Consensus 188 wd~~~~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 246 (615)
T 1pgu_A 188 YQGPPFKF---------------------SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE 246 (615)
T ss_dssp EETTTBEE---------------------EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC
T ss_pred EeCCCcce---------------------eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEec
Confidence 99887764 356778888 9999999999 999999999999999999999999998
Q ss_pred c---cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCC---------ccc----cccccccc--
Q psy15549 231 T---EHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDS---------SHE----LFDKVVPL-- 292 (621)
Q Consensus 231 ~---~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~----~~~~~~~~-- 292 (621)
. .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..+..+... +.. ..+....+
T Consensus 247 ~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d 325 (615)
T 1pgu_A 247 DDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 325 (615)
T ss_dssp BTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred ccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEE
Confidence 6 899999999999 9999999999999999999999887776654211100 000 00011111
Q ss_pred -------ccc---------------------------------CCcccceeeeeecCCCCeEEeccccccCCCCCCccee
Q psy15549 293 -------FHD---------------------------------DTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPIS 332 (621)
Q Consensus 293 -------~~~---------------------------------~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~ 332 (621)
... ..+...|.+++| +++..|++++ .|+.+++|+
T Consensus 326 ~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~-----~d~~i~~~~ 399 (615)
T 1pgu_A 326 LGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSIS-----WDDTLKVNG 399 (615)
T ss_dssp TTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEE-----TTTEEEETT
T ss_pred CCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEe-----CCCCEEEEE
Confidence 111 234445566666 4466677766 677888887
Q ss_pred eeeeeeec-------------------------c--cCCCc---------------------------------------
Q psy15549 333 VTHVFTRA-------------------------C--LNKPA--------------------------------------- 346 (621)
Q Consensus 333 ~~~~~~~~-------------------------~--~~~~~--------------------------------------- 346 (621)
+....... . .....
T Consensus 400 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~ 479 (615)
T 1pgu_A 400 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV 479 (615)
T ss_dssp EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred cccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccc
Confidence 65421000 0 00000
Q ss_pred --eecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcC--
Q psy15549 347 --VCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSS-- 422 (621)
Q Consensus 347 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp-- 422 (621)
..+..+...+.+ ..+++++++|++++.|+.|++||+.+++.+..+...|...|++++|+|
T Consensus 480 ~~~~~~~~~~~v~~----------------~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 543 (615)
T 1pgu_A 480 SFDLKTPLRAKPSY----------------ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE 543 (615)
T ss_dssp EEECSSCCSSCEEE----------------EEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC
T ss_pred cccccCCccCceEE----------------EEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcc
Confidence 111112222222 334558899999999999999999999988877444999999999999
Q ss_pred --------CCCeEEEEeCCCcEEEEEecCC-cCCcccCCCCCcccccCCCCCCCCcccCCCcccHHHhccc
Q psy15549 423 --------DGKVLIASSTDGYCSIISFGDN-EIGIPYVPPSGEESKENDPTKGEPVRSEDKPRSAEQAKGE 484 (621)
Q Consensus 423 --------dg~~l~s~s~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~~~ 484 (621)
++++|++++.||.|++|++.++ .+...+..|...+..+.|++++. +++++.|+.+++|++.
T Consensus 544 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 544 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp ------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred ccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 9999999999999999999998 78888999999999999999999 9999999999999875
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-41 Score=336.05 Aligned_cols=327 Identities=15% Similarity=0.189 Sum_probs=276.0
Q ss_pred CCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEcc
Q psy15549 12 NRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP 91 (621)
Q Consensus 12 h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 91 (621)
|.++|.+++|+|||+ +++++..++.+. +|......... ...+|...|.+++|+|
T Consensus 8 ~~~~v~~~~~s~dg~-----~~~~~~~~~~~~--------------~~~~~~~~~~~-------~~~~h~~~v~~~~~~~ 61 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-----MQPVPFPPDALI--------------GPGIPRHARQI-------NTLNHGEVVCAVTISN 61 (337)
T ss_dssp EEEECCEEEECSSSC-----EEECCCCTTSSS--------------STTCCSEEEEE-------EEECCSSCCCEEEECS
T ss_pred cCCceeEEEECCCCC-----EEEeecCCCcEe--------------ccccCCccccc-------eeccCCCceEEEEEec
Confidence 566899999999998 998888777666 65443332211 2457999999999999
Q ss_pred CCCEEEEEcCCceEEEEeccCccccccceecccc--cccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q psy15549 92 NGELLASGDDVGKEIWYLTERESGIANVEFASDL--SRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPS 169 (621)
Q Consensus 92 dg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~--~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 169 (621)
++++|++++++.+++|++..+... .....+ .+|...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus 62 ~~~~l~~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~----- 132 (337)
T 1gxr_A 62 PTRHVYTGGKGCVKVWDISHPGNK----SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR----- 132 (337)
T ss_dssp SSSEEEEECBSEEEEEETTSTTCC----SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-----
T ss_pred CCcEEEEcCCCeEEEEECCCCCce----eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-----
Confidence 999999999999999999876321 122222 278899999999999999999999999999999887532
Q ss_pred CCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEE
Q psy15549 170 SNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYV 249 (621)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 249 (621)
....+..|...|.+++|+|++++|++++.||.|++||+++++.+..+..|...|.+++|+|++++|
T Consensus 133 --------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 198 (337)
T 1gxr_A 133 --------------IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198 (337)
T ss_dssp --------------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred --------------eeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEE
Confidence 235667899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCc
Q psy15549 250 ATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRK 329 (621)
Q Consensus 250 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~ 329 (621)
++++.||.|++||+++++.+..+. +...+.+++|+|+++++++++ .++.++
T Consensus 199 ~~~~~dg~i~~~d~~~~~~~~~~~------------------------~~~~v~~~~~s~~~~~l~~~~-----~~~~i~ 249 (337)
T 1gxr_A 199 WTGGLDNTVRSWDLREGRQLQQHD------------------------FTSQIFSLGYCPTGEWLAVGM-----ESSNVE 249 (337)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEE------------------------CSSCEEEEEECTTSSEEEEEE-----TTSCEE
T ss_pred EEEecCCcEEEEECCCCceEeeec------------------------CCCceEEEEECCCCCEEEEEc-----CCCcEE
Confidence 999999999999999988766542 234578999999999999998 899999
Q ss_pred ceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEec
Q psy15549 330 PISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409 (621)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 409 (621)
+|++... ....+..+...+..+.|+| +++++++++.||.|++||+.+++.+...
T Consensus 250 ~~~~~~~--------~~~~~~~~~~~v~~~~~~~----------------~~~~l~~~~~dg~i~~~~~~~~~~~~~~-- 303 (337)
T 1gxr_A 250 VLHVNKP--------DKYQLHLHESCVLSLKFAY----------------CGKWFVSTGKDNLLNAWRTPYGASIFQS-- 303 (337)
T ss_dssp EEETTSS--------CEEEECCCSSCEEEEEECT----------------TSSEEEEEETTSEEEEEETTTCCEEEEE--
T ss_pred EEECCCC--------CeEEEcCCccceeEEEECC----------------CCCEEEEecCCCcEEEEECCCCeEEEEe--
Confidence 9997632 2334566777888888887 7789999999999999999999888554
Q ss_pred ccccceEEEEEcCCCCeEEEEeCCCcEEEEEec
Q psy15549 410 IHYTKLTDITWSSDGKVLIASSTDGYCSIISFG 442 (621)
Q Consensus 410 ~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~ 442 (621)
.|...|++++|+|++++|++++.||.|++|++.
T Consensus 304 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 388899999999999999999999999999974
No 23
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.4e-42 Score=371.24 Aligned_cols=406 Identities=15% Similarity=0.153 Sum_probs=310.2
Q ss_pred eeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCc-EEE
Q psy15549 8 ISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKA-VNV 86 (621)
Q Consensus 8 ~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~-V~~ 86 (621)
....|.+.|.+++|+|+++ +|++++ ++.|+ ||++.++... .+....+.+|... |.+
T Consensus 13 ~~~~~~~~v~~~~~spdg~-----~l~~~~-~~~v~--------------v~~~~~~~~~---~~~~~~~~~h~~~~v~~ 69 (615)
T 1pgu_A 13 QPSTQRNFTTHLSYDPTTN-----AIAYPC-GKSAF--------------VRCLDDGDSK---VPPVVQFTGHGSSVVTT 69 (615)
T ss_dssp CCCCCTTCCCCCEEETTTT-----EEEEEE-TTEEE--------------EEECCSSCCS---SCSEEEECTTTTSCEEE
T ss_pred CCCCccCceeEEEECCCCC-----EEEEec-CCeEE--------------EEECCCCCCc---cccceEEecCCCceEEE
Confidence 3446888999999999998 999998 78898 9998866111 0123458899999 999
Q ss_pred EEEcc--CCCEEEEEc-CCceEEEEeccCcc-ccccceecccccccCCCeEEEEECCCCCEEEEEeCC----CcEEEEEc
Q psy15549 87 VRFSP--NGELLASGD-DVGKEIWYLTERES-GIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE----STIIVWKQ 158 (621)
Q Consensus 87 l~~sp--dg~~las~~-d~~v~iw~~~~~~~-~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~d----g~i~vwd~ 158 (621)
++|+| ++++|++++ |+.|++|++..+.. ..........+..|...|.+++|+|++++|++++.+ +.|++||
T Consensus 70 ~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d- 148 (615)
T 1pgu_A 70 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD- 148 (615)
T ss_dssp EEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-
T ss_pred EEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-
Confidence 99999 999999998 88899999964310 000115566777899999999999999999999987 6888888
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEeccCCc--
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTST-HLISGSVDNTAIMWDVHKGKNLGILTEHKK-- 235 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-- 235 (621)
.++. ...+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+..|..
T Consensus 149 -~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 206 (615)
T 1pgu_A 149 -SGNS---------------------LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 206 (615)
T ss_dssp -TCCE---------------------EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred -CCCc---------------------ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCC
Confidence 3332 366778999999999999997 899999999999999999999999999999
Q ss_pred -ceEEEEEcCC-CCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCe
Q psy15549 236 -FVQGVAWDPK-NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQL 313 (621)
Q Consensus 236 -~v~~l~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~ 313 (621)
.|.+++|+|+ +++|++++.||.|++||+.+++.+..+... ...+...|.+++|+ ++.+
T Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~~-~~~~ 266 (615)
T 1pgu_A 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD-------------------QEPVQGGIFALSWL-DSQK 266 (615)
T ss_dssp CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT-------------------TBCCCSCEEEEEES-SSSE
T ss_pred ceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccc-------------------ccccCCceEEEEEc-CCCE
Confidence 9999999999 999999999999999999998887766210 00234557888888 8888
Q ss_pred EEeccccccCCCCCCcceeeeeeeeeccc--------------------------------------CCCceecCCcccc
Q psy15549 314 LIAPSGCLENSDSTRKPISVTHVFTRACL--------------------------------------NKPAVCLPSLQYY 355 (621)
Q Consensus 314 l~~~s~~~~~~d~~i~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~ 355 (621)
|++++ .|+.+++|++......... ......+.+|...
T Consensus 267 l~~~~-----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 341 (615)
T 1pgu_A 267 FATVG-----ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKG 341 (615)
T ss_dssp EEEEE-----TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSC
T ss_pred EEEEc-----CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCC
Confidence 88887 7788888875421111000 0111223334444
Q ss_pred eeeeeccce------------------------------------eeecCCCCCCCCcc---------------------
Q psy15549 356 SVAVKCCPV------------------------------------LFELKPSDDKPLFK--------------------- 378 (621)
Q Consensus 356 ~~~~~~~~~------------------------------------~~~~~~~~~~~~~~--------------------- 378 (621)
+.++.| |. +.....++...++.
T Consensus 342 v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~ 420 (615)
T 1pgu_A 342 ITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFT 420 (615)
T ss_dssp EEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEE
T ss_pred EEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCE
Confidence 444443 21 00000000000000
Q ss_pred ---------------------------------CCCcEEEEEEc-CCcEEEEeCCCCceeEEEecccccceEEEEEcCCC
Q psy15549 379 ---------------------------------LPYRIVIAVAT-ENNILLYDTQHASPFAFIANIHYTKLTDITWSSDG 424 (621)
Q Consensus 379 ---------------------------------~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg 424 (621)
..+.++++++. |+.|++||+.+++.......+|...|++++|+|+|
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 500 (615)
T 1pgu_A 421 AVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 500 (615)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS
T ss_pred EEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCC
Confidence 00567778888 88999999888765422334689999999999999
Q ss_pred CeEEEEeCCCcEEEEEecCCcCCcccCC-CCCcccccCCCC----------CCCCcccCCCcccHHHhcccC
Q psy15549 425 KVLIASSTDGYCSIISFGDNEIGIPYVP-PSGEESKENDPT----------KGEPVRSEDKPRSAEQAKGEG 485 (621)
Q Consensus 425 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~s~~~~~~~~~w~~~~ 485 (621)
++|++++.||.|++|++.+++....+.. |...+..+.++| ++..+++++.|+.+++|++..
T Consensus 501 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 572 (615)
T 1pgu_A 501 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 572 (615)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred CEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCC
Confidence 9999999999999999999999888888 999999999999 999999999999999999765
No 24
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6e-42 Score=339.99 Aligned_cols=292 Identities=16% Similarity=0.230 Sum_probs=256.3
Q ss_pred eccccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCC
Q psy15549 73 FASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDES 151 (621)
Q Consensus 73 ~~~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg 151 (621)
....+.+|.+.|.+++|+|++++|++|+ |+.|++|+...+ .....+..|...|.+++|+|++++|++|+.|+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 119 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT-------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-------CEEEEEECSSSCEEEEEECTTSSEEEEEETTC
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-------CcceEeecCCccEEEEEECCCCCEEEEEeCCC
Confidence 3456899999999999999999999998 889999998876 55667788999999999999999999999999
Q ss_pred cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Q psy15549 152 TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILT 231 (621)
Q Consensus 152 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 231 (621)
.|++|++.+..... .....+.+|...|.++.|++++ .|++++.|+.|++||+.+++.+..+.
T Consensus 120 ~v~iw~~~~~~~~~-----------------~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 120 ICSIYNLKTREGNV-----------------RVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp EEEEEETTTCSBSC-----------------EEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred eEEEEECccCCCcc-----------------eeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEc
Confidence 99999998764321 1235678999999999999887 48899999999999999999999999
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCC
Q psy15549 232 EHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDG 311 (621)
Q Consensus 232 ~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg 311 (621)
+|...|.+++|+|++++|++|+.|+.|++||++++..+..+.. +...|.+++|+|++
T Consensus 182 ~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~-----------------------h~~~v~~v~~~p~~ 238 (340)
T 1got_B 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-----------------------HESDINAICFFPNG 238 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC-----------------------CSSCEEEEEECTTS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC-----------------------CcCCEEEEEEcCCC
Confidence 9999999999999999999999999999999999887766642 34457889999988
Q ss_pred CeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCC
Q psy15549 312 QLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATEN 391 (621)
Q Consensus 312 ~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 391 (621)
++|++++ .|+
T Consensus 239 ~~l~s~s----------------------------------------------------------------------~d~ 248 (340)
T 1got_B 239 NAFATGS----------------------------------------------------------------------DDA 248 (340)
T ss_dssp SEEEEEE----------------------------------------------------------------------TTS
T ss_pred CEEEEEc----------------------------------------------------------------------CCC
Confidence 7776654 788
Q ss_pred cEEEEeCCCCceeEEEec-ccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCCcc
Q psy15549 392 NILLYDTQHASPFAFIAN-IHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEPVR 470 (621)
Q Consensus 392 ~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (621)
.|++||+.+++.+..+.. .+...|++++|+|+|++|++|+.||.|++||+.+++....+.+|...+..+.+++++..++
T Consensus 249 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 328 (340)
T 1got_B 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328 (340)
T ss_dssp CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred cEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEE
Confidence 899999988877766532 2335799999999999999999999999999999999899999999999999999999999
Q ss_pred cCCCcccHHHhc
Q psy15549 471 SEDKPRSAEQAK 482 (621)
Q Consensus 471 s~~~~~~~~~w~ 482 (621)
+++.|+.|++|+
T Consensus 329 s~s~D~~i~iWd 340 (340)
T 1got_B 329 TGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCccEEecC
Confidence 999999999995
No 25
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.7e-42 Score=400.67 Aligned_cols=434 Identities=17% Similarity=0.157 Sum_probs=326.6
Q ss_pred eeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCcccc------------------------------ccce
Q psy15549 8 ISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRL------------------------------KTGK 57 (621)
Q Consensus 8 ~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~------------------------------~~~~ 57 (621)
....|.+.|.+++|+|+++ +||+|+.||.|++||+.+.... ..++
T Consensus 652 ~~~~h~~~v~~~~~s~~~~-----~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~ 726 (1249)
T 3sfz_A 652 DIKAHEDEVLCCAFSSDDS-----YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726 (1249)
T ss_dssp EECCCSSCEEEEEECTTSS-----EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEE
T ss_pred EeccCCCCEEEEEEecCCC-----EEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEE
Confidence 3446899999999999998 9999999999999998654321 4678
Q ss_pred eEEeccccccccceeeccccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCcccccc------------------
Q psy15549 58 IWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIAN------------------ 118 (621)
Q Consensus 58 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~------------------ 118 (621)
+||+.++... ..+.+|.+.|.+++|+|++++|++++ |+.|++|++..+......
T Consensus 727 vwd~~~~~~~-------~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1249)
T 3sfz_A 727 LWDLNQKECR-------NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEV 799 (1249)
T ss_dssp EEETTSSSEE-------EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCC
T ss_pred EEECCCcchh-------heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccc
Confidence 8988876543 34789999999999999999999988 888999998765210000
Q ss_pred -----------------------------ceec-ccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q psy15549 119 -----------------------------VEFA-SDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFP 168 (621)
Q Consensus 119 -----------------------------~~~~-~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~ 168 (621)
.... ....+|...|.+++|+|++.++++++.||.|++||+.++..+..+.
T Consensus 800 ~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 879 (1249)
T 3sfz_A 800 IVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR 879 (1249)
T ss_dssp CBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC
Confidence 0000 1112788899999999999999999999999999998876543322
Q ss_pred CCCccc----------------ccccccceeeee------------------------------------------eecC
Q psy15549 169 SSNLDE----------------ENVNKEHWIVTK------------------------------------------ILRG 190 (621)
Q Consensus 169 ~~~~~~----------------~~~~~~~~~~~~------------------------------------------~~~~ 190 (621)
...... .......|.... ....
T Consensus 880 ~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 959 (1249)
T 3sfz_A 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYL 959 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEE
T ss_pred CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEc
Confidence 111000 000111222100 0001
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeee
Q psy15549 191 HLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVIS 270 (621)
Q Consensus 191 ~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 270 (621)
+...+.+++|+|+++++++|+.+|.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++...
T Consensus 960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 23346666777777777777777777777777777777888899999999999999999999999999999999887654
Q ss_pred ecccCCCCCCCcc---------ccccccccccc---------cCCcccceeeeeecCCCCeEEeccccccCCCCCCccee
Q psy15549 271 RACRSKLPVDSSH---------ELFDKVVPLFH---------DDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPIS 332 (621)
Q Consensus 271 ~~~~~~~~~~~~~---------~~~~~~~~~~~---------~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~ 332 (621)
.. .+...+.... ...+..+.+|. ...+...|.+++|+|+++++++++ .|+.+++|+
T Consensus 1040 ~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s-----~d~~v~iwd 1113 (1249)
T 3sfz_A 1040 LQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS-----ADKTAKIWS 1113 (1249)
T ss_dssp CB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEEC-----CSSCCCEEC
T ss_pred Ee-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEc-----CCCcEEEEE
Confidence 32 2222211100 00122222222 223567789999999999999999 899999999
Q ss_pred eeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEE-----
Q psy15549 333 VTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFI----- 407 (621)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----- 407 (621)
+.. ......+.+|...+.++.|+| ++.++++++.||.|++||+.+++.+..+
T Consensus 1114 ~~~-------~~~~~~l~~h~~~v~~~~~s~----------------dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~ 1170 (1249)
T 3sfz_A 1114 FDL-------LSPLHELKGHNGCVRCSAFSL----------------DGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1170 (1249)
T ss_dssp SSS-------SSCSBCCCCCSSCEEEEEECS----------------SSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-
T ss_pred CCC-------cceeeeeccCCCcEEEEEECC----------------CCCEEEEEeCCCEEEEEECCCCceEEEeccccc
Confidence 763 234556678888899999888 7789999999999999999998876654
Q ss_pred ---ecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCCcccCCCcccHHHhccc
Q psy15549 408 ---ANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEPVRSEDKPRSAEQAKGE 484 (621)
Q Consensus 408 ---~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~~~ 484 (621)
..+|...|++++|+|||++|++++ |.|++||+.+++....+..+...+..+.+++++..+++++.+|.+++|++.
T Consensus 1171 ~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1171 EEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp ------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred cccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 235889999999999999999985 899999999999999999999899999999999999999999999999853
No 26
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.1e-42 Score=334.21 Aligned_cols=291 Identities=16% Similarity=0.202 Sum_probs=242.9
Q ss_pred eeccccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCC
Q psy15549 72 EFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE 150 (621)
Q Consensus 72 ~~~~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~d 150 (621)
++..++.+|.+.|.+++|+|++++|++++ |+.|++|++..+ ..+..+..|...|.+++|+|++++|++|+.|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 76 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-------VEVRSIQVTETPVRAGKFIARKNWIIVGSDD 76 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------ceeEEeeccCCcEEEEEEeCCCCEEEEECCC
Confidence 34556899999999999999999999988 889999999876 6677788999999999999999999999999
Q ss_pred CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEEE
Q psy15549 151 STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKG-KNLGI 229 (621)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~-~~~~~ 229 (621)
++|++||+.+++.+ ..+.+|...|++++|+|++++|++|+.|+.|++||++++ .....
T Consensus 77 ~~i~vwd~~~~~~~---------------------~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~ 135 (304)
T 2ynn_A 77 FRIRVFNYNTGEKV---------------------VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (304)
T ss_dssp SEEEEEETTTCCEE---------------------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE
T ss_pred CEEEEEECCCCcEE---------------------EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh
Confidence 99999999988753 667899999999999999999999999999999999887 45567
Q ss_pred eccCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeec
Q psy15549 230 LTEHKKFVQGVAWDP-KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308 (621)
Q Consensus 230 ~~~~~~~v~~l~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 308 (621)
+.+|...|.+++|+| ++.+|++|+.|+.|++||++++.....+.. .+...+..+.|+
T Consensus 136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~----------------------~~~~~v~~~~~~ 193 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT----------------------GQERGVNYVDYY 193 (304)
T ss_dssp ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC----------------------CCTTCEEEEEEC
T ss_pred hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc----------------------CCcCcEEEEEEE
Confidence 889999999999999 678999999999999999977654332211 111223344444
Q ss_pred CCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEE
Q psy15549 309 PDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVA 388 (621)
Q Consensus 309 pdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (621)
|.. ++.++++++
T Consensus 194 ~~~--------------------------------------------------------------------~~~~l~s~s 205 (304)
T 2ynn_A 194 PLP--------------------------------------------------------------------DKPYMITAS 205 (304)
T ss_dssp CST--------------------------------------------------------------------TCCEEEEEE
T ss_pred EcC--------------------------------------------------------------------CCCEEEEEc
Confidence 311 234667777
Q ss_pred cCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCC-
Q psy15549 389 TENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGE- 467 (621)
Q Consensus 389 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 467 (621)
.|+.|++||+.+++++..+ .+|...|.+++|+|++++|++|+.||+|++||+.++++...+..+...+..+.++|++.
T Consensus 206 ~D~~i~iWd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 206 DDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (304)
T ss_dssp TTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGG
T ss_pred CCCeEEEEeCCCCccceee-CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCc
Confidence 9999999999999998888 46999999999999999999999999999999999999999998888888888888775
Q ss_pred -CcccCCCcccHHHhc
Q psy15549 468 -PVRSEDKPRSAEQAK 482 (621)
Q Consensus 468 -~~~s~~~~~~~~~w~ 482 (621)
.++++..++ +.+|.
T Consensus 285 ~~~asg~~~g-~~~~~ 299 (304)
T 2ynn_A 285 NYIASGFDNG-FTVLS 299 (304)
T ss_dssp GCEEEEETTE-EEEEE
T ss_pred eEEEEecCCc-eEEEE
Confidence 345544443 44443
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.3e-42 Score=339.94 Aligned_cols=300 Identities=15% Similarity=0.152 Sum_probs=240.0
Q ss_pred ccccCcEEEEEEccCCCEEEEEcCCceEEEEeccCcc----ccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcE
Q psy15549 78 SRHQKAVNVVRFSPNGELLASGDDVGKEIWYLTERES----GIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTI 153 (621)
Q Consensus 78 ~~h~~~V~~l~~spdg~~las~~d~~v~iw~~~~~~~----~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i 153 (621)
..|...|.+++|+|||++|++++++.+++|+...... .............|...|.+++|+|++ .|++|+.||+|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred ccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4567789999999999999999998888887432100 000001122233466789999999985 78899999999
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC
Q psy15549 154 IVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEH 233 (621)
Q Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 233 (621)
+|||+.+++.+..+ ...+.+|...|++++|+|++++|++|+.|+.|++||+.+++++..+.+|
T Consensus 106 ~lWd~~~~~~~~~~-----------------~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 168 (344)
T 4gqb_B 106 ELWELDENETLIVS-----------------KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH 168 (344)
T ss_dssp EEEEECTTSSCEEE-----------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEEeccCCCceeEe-----------------eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc
Confidence 99999988764221 2345689999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEcCCC-CEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCC
Q psy15549 234 KKFVQGVAWDPKN-QYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQ 312 (621)
Q Consensus 234 ~~~v~~l~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~ 312 (621)
...|.+++|+|++ .+|++++.|++|++||+++++....+... .+...+.+++|+|++.
T Consensus 169 ~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~---------------------~~~~~~~~~~~~p~~~ 227 (344)
T 4gqb_B 169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS---------------------APGYLPTSLAWHPQQS 227 (344)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------------------------CCCEEEEEECSSCT
T ss_pred CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc---------------------eeeccceeeeecCCCC
Confidence 9999999999988 47899999999999999998876665311 1223456777777543
Q ss_pred eEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCc
Q psy15549 313 LLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENN 392 (621)
Q Consensus 313 ~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 392 (621)
.++++++.|+.
T Consensus 228 ---------------------------------------------------------------------~~l~sg~~dg~ 238 (344)
T 4gqb_B 228 ---------------------------------------------------------------------EVFVFGDENGT 238 (344)
T ss_dssp ---------------------------------------------------------------------TEEEEEETTSE
T ss_pred ---------------------------------------------------------------------cceEEeccCCc
Confidence 23444568899
Q ss_pred EEEEeCCCCceeEEEecccccceEEEEEcCCC-CeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCC-cc
Q psy15549 393 ILLYDTQHASPFAFIANIHYTKLTDITWSSDG-KVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEP-VR 470 (621)
Q Consensus 393 i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 470 (621)
|++||+.+++++..+ .+|...|++++|+|+| ++|++|+.||+|+|||+.++++. .+.+|...+..+.|+|++.. ++
T Consensus 239 v~~wd~~~~~~~~~~-~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSS-AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp EEEEESCC--CCEEE-ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEE
T ss_pred EEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEE
Confidence 999999999999888 4699999999999998 57999999999999999998875 46789999999999999986 56
Q ss_pred cCCCcccHHHhcccCcc
Q psy15549 471 SEDKPRSAEQAKGEGKV 487 (621)
Q Consensus 471 s~~~~~~~~~w~~~~~~ 487 (621)
+++.|+.|++|++..+.
T Consensus 317 s~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 317 TVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEETTSCEEEEECCC--
T ss_pred EEcCCCeEEEEECCCCC
Confidence 88999999999987654
No 28
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.2e-40 Score=323.79 Aligned_cols=290 Identities=19% Similarity=0.313 Sum_probs=245.5
Q ss_pred eeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEE
Q psy15549 8 ISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVV 87 (621)
Q Consensus 8 ~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l 87 (621)
.+.+|.++|++++|+|+++ +|++|+.||.|+ +|++.++... ..+.+|...|.++
T Consensus 18 ~~~gh~~~v~~~~~s~~~~-----~l~s~~~dg~i~--------------iw~~~~~~~~-------~~~~~h~~~v~~~ 71 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGE-----WLASSSADKLIK--------------IWGAYDGKFE-------KTISGHKLGISDV 71 (312)
T ss_dssp EECCCSSCEEEEEECTTSS-----EEEEEETTSCEE--------------EEETTTCCEE-------EEECCCSSCEEEE
T ss_pred EEcccCCcEEEEEECCCCC-----EEEEeeCCCeEE--------------EEeCCCcccc-------hhhccCCCceEEE
Confidence 3457899999999999998 999999999999 9988766543 3478999999999
Q ss_pred EEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC
Q psy15549 88 RFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPE 166 (621)
Q Consensus 88 ~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~ 166 (621)
+|+|++++|++++ |+.|++|++..+ ..+..+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+
T Consensus 72 ~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-- 142 (312)
T 4ery_A 72 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL-- 142 (312)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE--
T ss_pred EEcCCCCEEEEECCCCEEEEEECCCC-------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEE--
Confidence 9999999999988 888999999876 566778899999999999999999999999999999999887643
Q ss_pred CCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCcceEEEEEcCC
Q psy15549 167 FPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILT-EHKKFVQGVAWDPK 245 (621)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~sp~ 245 (621)
..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+. .+...+..++|+|+
T Consensus 143 -------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (312)
T 4ery_A 143 -------------------KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 203 (312)
T ss_dssp -------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTT
T ss_pred -------------------EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCC
Confidence 5677899999999999999999999999999999999998887764 45678999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCC
Q psy15549 246 NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSD 325 (621)
Q Consensus 246 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d 325 (621)
+++|++++.|+.|++||+++++.+..+..+.... ......+++
T Consensus 204 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~---------------- 246 (312)
T 4ery_A 204 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---------------------YCIFANFSV---------------- 246 (312)
T ss_dssp SSEEEEEETTTEEEEEETTTTEEEEEECSSCCSS---------------------SCCCEEEEC----------------
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEEecCCce---------------------EEEEEEEEe----------------
Confidence 9999999999999999999988776654322110 000011111
Q ss_pred CCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeE
Q psy15549 326 STRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFA 405 (621)
Q Consensus 326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 405 (621)
.++.++++++.||.|++||+.+++.+.
T Consensus 247 -----------------------------------------------------~~~~~l~sg~~dg~i~vwd~~~~~~~~ 273 (312)
T 4ery_A 247 -----------------------------------------------------TGGKWIVSGSEDNLVYIWNLQTKEIVQ 273 (312)
T ss_dssp -----------------------------------------------------SSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred -----------------------------------------------------CCCcEEEEECCCCEEEEEECCCchhhh
Confidence 023456667789999999999999888
Q ss_pred EEecccccceEEEEEcCCCCeEEEEe--CCCcEEEEEec
Q psy15549 406 FIANIHYTKLTDITWSSDGKVLIASS--TDGYCSIISFG 442 (621)
Q Consensus 406 ~~~~~h~~~v~~~~~spdg~~l~s~s--~dg~i~iw~~~ 442 (621)
.+ .+|...|.+++|+|++++|++++ .|++|++|+.+
T Consensus 274 ~~-~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 274 KL-QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EE-CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hh-hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 88 46999999999999999999997 69999999965
No 29
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.8e-42 Score=342.49 Aligned_cols=327 Identities=13% Similarity=0.123 Sum_probs=234.6
Q ss_pred eEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCCE
Q psy15549 16 VLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGEL 95 (621)
Q Consensus 16 v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 95 (621)
-..+.+.++. +++.++.+.... .|++.... ..+|...|++++|||||++
T Consensus 8 ~sg~d~g~~~------~~~~~~g~~~~~--------------~w~~p~~~-----------p~~H~~~V~~v~fSpDG~~ 56 (357)
T 4g56_B 8 SSGVDLGTEN------LYFQSNGSSKGS--------------AWGRPVTA-----------PACMEVQIGAVRYRRDGAL 56 (357)
T ss_dssp ---------------------------------------------------------------CCCSEEEEEEECSSSCE
T ss_pred ccCCCCCccc------eEEecCCCcccc--------------ccCCCCCC-----------cccccCCEEEEEECCCCCE
Confidence 3456666666 445555566666 88765322 3579999999999999999
Q ss_pred EEEEcC-------CceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q psy15549 96 LASGDD-------VGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFP 168 (621)
Q Consensus 96 las~~d-------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~ 168 (621)
||+|++ +.+++|+...+... ........+|...|.+++|+|++. +++++.||+|+|||+.+++.....
T Consensus 57 las~s~d~~~~wd~~v~~~~~~~~~~~---~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~- 131 (357)
T 4g56_B 57 LLAASSLSSRTWGGSIWVFKDPEGAPN---ESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVN- 131 (357)
T ss_dssp EEEEECSSSSSCCEEEEEESSCC---C---GGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCC-
T ss_pred EEEEcCCCCccccCeEEEEECCCCCcc---eeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEE-
Confidence 999984 34666665544211 122334457889999999999985 556788999999999988754322
Q ss_pred CCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCC-
Q psy15549 169 SSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQ- 247 (621)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~- 247 (621)
.....+|...|++++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.
T Consensus 132 ----------------~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 132 ----------------KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp ----------------CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred ----------------eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 134568999999999999999999999999999999999999999999999999999999875
Q ss_pred EEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCC
Q psy15549 248 YVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDST 327 (621)
Q Consensus 248 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~ 327 (621)
+|++++.||.|++||+++++....+. ...+...+.+++|+|++..
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~---------------------~~~~~~~v~~v~~sp~~~~-------------- 240 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRID---------------------FCASDTIPTSVTWHPEKDD-------------- 240 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCC---------------------CTTCCSCEEEEEECTTSTT--------------
T ss_pred eeeeeccCCceEEEECCCCceeeeee---------------------eccccccccchhhhhcccc--------------
Confidence 78899999999999999877654432 1223445678888887532
Q ss_pred CcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEE
Q psy15549 328 RKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFI 407 (621)
Q Consensus 328 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 407 (621)
++++++.|+.|++||+.+++.+..+
T Consensus 241 -------------------------------------------------------~la~g~~d~~i~~wd~~~~~~~~~~ 265 (357)
T 4g56_B 241 -------------------------------------------------------TFACGDETGNVSLVNIKNPDSAQTS 265 (357)
T ss_dssp -------------------------------------------------------EEEEEESSSCEEEEESSCGGGCEEE
T ss_pred -------------------------------------------------------eEEEeecccceeEEECCCCcEeEEE
Confidence 2334457899999999999988887
Q ss_pred ecccccceEEEEEcCCC-CeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCC-CCCCcccCCCcccHHHhcccC
Q psy15549 408 ANIHYTKLTDITWSSDG-KVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPT-KGEPVRSEDKPRSAEQAKGEG 485 (621)
Q Consensus 408 ~~~h~~~v~~~~~spdg-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~w~~~~ 485 (621)
.+|...|++++|+|++ ++||+|+.||+|+|||+.++++.+.+ .|...+..+.|+| ++..+++++.|+.|++|++..
T Consensus 266 -~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 266 -AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp -CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred -eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 4699999999999997 57999999999999999999887665 6888899999998 788999999999999999754
Q ss_pred c
Q psy15549 486 K 486 (621)
Q Consensus 486 ~ 486 (621)
+
T Consensus 344 ~ 344 (357)
T 4g56_B 344 E 344 (357)
T ss_dssp -
T ss_pred C
Confidence 3
No 30
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2e-40 Score=335.85 Aligned_cols=304 Identities=21% Similarity=0.332 Sum_probs=230.3
Q ss_pred ecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccc---------ee--eccccc
Q psy15549 10 WHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIAN---------VE--FASDLS 78 (621)
Q Consensus 10 ~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~---------~~--~~~~~~ 78 (621)
..|.+.|+|++|+|||+ +||+|+ ++.++ ||++.++...... .. ......
T Consensus 61 ~~h~~~V~~v~fspdg~-----~la~g~-~~~v~--------------i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGE-----YLATGC-NKTTQ--------------VYRVSDGSLVARLSDDSAANKDPENLNTSSSP 120 (393)
T ss_dssp EECSSCCCEEEECTTSS-----EEEEEC-BSCEE--------------EEETTTCCEEEEECC-----------------
T ss_pred cCCCCEEEEEEECCCCC-----EEEEEc-CCcEE--------------EEEecCCCEEEEecCccccccccccccccccC
Confidence 35899999999999998 999987 67899 5555544322110 00 000011
Q ss_pred cccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q psy15549 79 RHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWK 157 (621)
Q Consensus 79 ~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd 157 (621)
.+...|.+++|+|+|++|++|+ |+.|++|++..+ .....+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 121 ~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd 193 (393)
T 1erj_A 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR-------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193 (393)
T ss_dssp CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCC-------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence 2334599999999999999988 889999999876 66777889999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEe------
Q psy15549 158 QKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP-TSTHLISGSVDNTAIMWDVHKGKNLGIL------ 230 (621)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~------ 230 (621)
+.+++.. ..+ .+...+.+++|+| ++++|++|+.|+.|++||++++..+..+
T Consensus 194 ~~~~~~~---------------------~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~ 251 (393)
T 1erj_A 194 LRTGQCS---------------------LTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 251 (393)
T ss_dssp TTTTEEE---------------------EEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----
T ss_pred CCCCeeE---------------------EEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccC
Confidence 9887642 222 3567799999999 8999999999999999999999887776
Q ss_pred -ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecC
Q psy15549 231 -TEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSP 309 (621)
Q Consensus 231 -~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 309 (621)
.+|...|.+++|+|++++|++++.|+.|++||+++.......... .
T Consensus 252 ~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~---------------------------------~ 298 (393)
T 1erj_A 252 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP---------------------------------N 298 (393)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------------------------------------------
T ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC---------------------------------C
Confidence 578899999999999999999999999999999875432211000 0
Q ss_pred CCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEc
Q psy15549 310 DGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVAT 389 (621)
Q Consensus 310 dg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (621)
.+.... .+.+|...+.++.++| ++.+|++++.
T Consensus 299 ~~~~~~--------------------------------~~~~h~~~v~~~~~~~----------------~~~~l~sgs~ 330 (393)
T 1erj_A 299 SGTCEV--------------------------------TYIGHKDFVLSVATTQ----------------NDEYILSGSK 330 (393)
T ss_dssp --CEEE--------------------------------EEECCSSCEEEEEECG----------------GGCEEEEEET
T ss_pred CCcceE--------------------------------EEecccCcEEEEEECC----------------CCCEEEEEeC
Confidence 000000 1112333344444443 4456667778
Q ss_pred CCcEEEEeCCCCceeEEEecccccceEEEEEcC------CCCeEEEEeCCCcEEEEEecCC
Q psy15549 390 ENNILLYDTQHASPFAFIANIHYTKLTDITWSS------DGKVLIASSTDGYCSIISFGDN 444 (621)
Q Consensus 390 dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp------dg~~l~s~s~dg~i~iw~~~~~ 444 (621)
|+.|++||..+++++..+ .+|...|.+++|++ ++++|++|+.||+|+||++...
T Consensus 331 D~~v~iwd~~~~~~~~~l-~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 331 DRGVLFWDKKSGNPLLML-QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCeEEEEECCCCeEEEEE-CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999999999988887 46999999999886 6889999999999999998753
No 31
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-41 Score=346.50 Aligned_cols=343 Identities=16% Similarity=0.267 Sum_probs=273.9
Q ss_pred CCCCeEEEeccccccCCcceEEEEe----------cCCceEEeeeccCccccccceeEEeccccccccceeecccccccc
Q psy15549 12 NRDPVLSVDIQLKQEKDNCYRIVTG----------GADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQ 81 (621)
Q Consensus 12 h~~~v~~l~~spd~~~~~~~~l~tg----------~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~ 81 (621)
+...|.+++|+|+++ .+|++| +.|+.|+ ||++.++..... .. ...|.
T Consensus 11 ~~~~v~~~~~sp~g~----~~l~~g~~~g~~~~~~~~d~~v~--------------iw~~~~~~~~~~----~~-~~~~~ 67 (416)
T 2pm9_A 11 EFSRTATFAWSHDKI----PLLVSGTVSGTVDANFSTDSSLE--------------LWSLLAADSEKP----IA-SLQVD 67 (416)
T ss_dssp EEEESCBCCBCSSSS----CEEEEBCBSSCCCSSCCCCCCCE--------------EEESSSGGGCSC----SC-CCCCS
T ss_pred hhhhcceEeeCCCCC----CEEEEEecCcccccccCCCCeEE--------------EEEccCCCCCcE----EE-EEecC
Confidence 345799999999985 489999 8899999 998887653211 11 23588
Q ss_pred CcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcc
Q psy15549 82 KAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN-GELLASGDDESTIIVWKQK 159 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~-g~~l~s~s~dg~i~vwd~~ 159 (621)
..|.+++|+|++++|++++ |+.|++|++...... ......+.+|...|.+++|+|+ +++|++++.|+.|++||+.
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA---INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC---CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeeccccccc---ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 9999999999999999987 889999999873211 1356677889999999999998 8999999999999999998
Q ss_pred CCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEeccC-----
Q psy15549 160 TDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT-STHLISGSVDNTAIMWDVHKGKNLGILTEH----- 233 (621)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----- 233 (621)
+......... ......+..|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..+
T Consensus 145 ~~~~~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 212 (416)
T 2pm9_A 145 KCTESPSNYT------------PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSG 212 (416)
T ss_dssp TTSSCTTTCC------------CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSC
T ss_pred CCcccccccc------------ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccc
Confidence 8762100000 0001234678999999999998 789999999999999999999999888776
Q ss_pred -CcceEEEEEcCCC-CEEEEEeCCC---cEEEEEccCce-eeeecccCCCCCCCccccccccccccccCCcccceeeeee
Q psy15549 234 -KKFVQGVAWDPKN-QYVATLSSDR---SLRTYSIQSKK-VISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTF 307 (621)
Q Consensus 234 -~~~v~~l~~sp~~-~~l~s~~~dg---~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 307 (621)
...|.+++|+|++ .+|++++.|+ .|++||++++. .+..+. ..+...|.+++|
T Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~----------------------~~~~~~v~~~~~ 270 (416)
T 2pm9_A 213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN----------------------QGHQKGILSLDW 270 (416)
T ss_dssp CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC----------------------SCCSSCEEEEEE
T ss_pred cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee----------------------cCccCceeEEEe
Confidence 7889999999997 6899999998 99999998863 333221 034556788999
Q ss_pred cC-CCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEE
Q psy15549 308 SP-DGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIA 386 (621)
Q Consensus 308 sp-dg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 386 (621)
+| ++++|++++
T Consensus 271 s~~~~~~l~s~~-------------------------------------------------------------------- 282 (416)
T 2pm9_A 271 CHQDEHLLLSSG-------------------------------------------------------------------- 282 (416)
T ss_dssp CSSCSSCEEEEE--------------------------------------------------------------------
T ss_pred CCCCCCeEEEEe--------------------------------------------------------------------
Confidence 98 676666544
Q ss_pred EEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCC-CeEEEEeCCCcEEEEEecCCcCCcccCC-------------
Q psy15549 387 VATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDG-KVLIASSTDGYCSIISFGDNEIGIPYVP------------- 452 (621)
Q Consensus 387 ~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~s~dg~i~iw~~~~~~~~~~~~~------------- 452 (621)
.|+.|++||+.+++.+..+. +|...|++++|+|++ .+|++++.||.|++|++.++........
T Consensus 283 --~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (416)
T 2pm9_A 283 --RDNTVLLWNPESAEQLSQFP-ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFW 359 (416)
T ss_dssp --SSSEEEEECSSSCCEEEEEE-CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---------------
T ss_pred --CCCCEEEeeCCCCccceeec-CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccc
Confidence 78999999999999888884 699999999999999 8999999999999999997764433211
Q ss_pred ----------------------CCCcccccCCCCCCCCcccCCCcccHHHhcccC
Q psy15549 453 ----------------------PSGEESKENDPTKGEPVRSEDKPRSAEQAKGEG 485 (621)
Q Consensus 453 ----------------------~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~~~~ 485 (621)
+...+..+.|+++|+.+++++.|+.|++|++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 360 NNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp -------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 344556778999999999999999999998653
No 32
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-41 Score=375.36 Aligned_cols=414 Identities=11% Similarity=0.067 Sum_probs=293.2
Q ss_pred eecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEE
Q psy15549 9 SWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVR 88 (621)
Q Consensus 9 ~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 88 (621)
...|..+|.+|+|+| ++ +|++++.|+.|+ |||+.+++... .+. |.+.|++++
T Consensus 54 ~~~~~~~V~~l~fsp-g~-----~L~S~s~D~~v~--------------lWd~~~~~~~~-------~~~-~~~~V~~v~ 105 (902)
T 2oaj_A 54 KLEDRSAIKEMRFVK-GI-----YLVVINAKDTVY--------------VLSLYSQKVLT-------TVF-VPGKITSID 105 (902)
T ss_dssp ECSSCCCEEEEEEET-TT-----EEEEEETTCEEE--------------EEETTTCSEEE-------EEE-CSSCEEEEE
T ss_pred EcCCCCCEEEEEEcC-CC-----EEEEEECcCeEE--------------EEECCCCcEEE-------EEc-CCCCEEEEE
Confidence 345788999999999 87 999999999999 88887765432 233 668999999
Q ss_pred EccCCCEEEEEc-CCceEEEEeccCcccccccee-----c-ccccccCCCeEEEEECCC-CCEEEEEeCCCcEEEEEccC
Q psy15549 89 FSPNGELLASGD-DVGKEIWYLTERESGIANVEF-----A-SDLSRHQKAVNVVRFSPN-GELLASGDDESTIIVWKQKT 160 (621)
Q Consensus 89 ~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~-----~-~~~~~h~~~V~~i~~sp~-g~~l~s~s~dg~i~vwd~~~ 160 (621)
|+|++++|++|+ |+.|++|++..+... .+.. . ..+.+|.+.|++++|+|+ +..|++|+.||.| +||+.+
T Consensus 106 ~sp~g~~l~sgs~dg~V~lwd~~~~~~~--~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~ 182 (902)
T 2oaj_A 106 TDASLDWMLIGLQNGSMIVYDIDRDQLS--SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE 182 (902)
T ss_dssp CCTTCSEEEEEETTSCEEEEETTTTEEE--EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCccc--cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC
Confidence 999999999998 889999999876311 0000 0 345789999999999995 5789999999999 999998
Q ss_pred CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE--ec---c---
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGI--LT---E--- 232 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~--~~---~--- 232 (621)
++.+..+.............. ......|...|++++|+|+|++|++|+.||.|++||+++++++.. +. .
T Consensus 183 ~~~~~~~~~~~~~g~~~~~~~---~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~ 259 (902)
T 2oaj_A 183 NEIKQSFIYELPPFAPGGDFS---EKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVP 259 (902)
T ss_dssp TEEEEEECCCBCTTCCCSTTC---CCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSC
T ss_pred CceEEEEecccCCcCCCcccc---cccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCC
Confidence 765432211000000000000 011234568899999999999999999999999999999988754 21 1
Q ss_pred ----------CCcceEEEEEc----CCC-CEEEEEeCC-----CcEEEEEcc------------------Cceeeeeccc
Q psy15549 233 ----------HKKFVQGVAWD----PKN-QYVATLSSD-----RSLRTYSIQ------------------SKKVISRACR 274 (621)
Q Consensus 233 ----------~~~~v~~l~~s----p~~-~~l~s~~~d-----g~i~iwd~~------------------~~~~~~~~~~ 274 (621)
|...|.+++|+ |++ ..|++|+.| ..+.+|++. +.+....+..
T Consensus 260 ~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 339 (902)
T 2oaj_A 260 QPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL 339 (902)
T ss_dssp CTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC
T ss_pred CCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec
Confidence 34579999995 443 457777665 378888842 1111111100
Q ss_pred -CC------------CCC----CCc-c---cccccccccc----------------------------------------
Q psy15549 275 -SK------------LPV----DSS-H---ELFDKVVPLF---------------------------------------- 293 (621)
Q Consensus 275 -~~------------~~~----~~~-~---~~~~~~~~~~---------------------------------------- 293 (621)
+. .+. ... . ...+..+.+|
T Consensus 340 ~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~ 419 (902)
T 2oaj_A 340 PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLG 419 (902)
T ss_dssp SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHH
T ss_pred CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHH
Confidence 00 000 000 0 0000001111
Q ss_pred ----------ccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCC-cee--c-----CCcccc
Q psy15549 294 ----------HDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKP-AVC--L-----PSLQYY 355 (621)
Q Consensus 294 ----------~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~--~-----~~~~~~ 355 (621)
....+...+.+++|+|++++|++++ .|+++++|++.... ...+ ... + .+|...
T Consensus 420 ~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs-----~DgtVrlWd~~~g~----~~~~~~~~~~l~~~~~~~h~~~ 490 (902)
T 2oaj_A 420 ALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGH-----SNGSVRIYDASHGD----IQDNASFEVNLSRTLNKAKELA 490 (902)
T ss_dssp HHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEE-----TTSEEEEEESSCCT----TTTTBCEEEEHHHHTTCSSSCC
T ss_pred HHhcccCCCCcccCCcCCCCcccccccCcEEEEec-----CCCcEEEEECCCcc----ccCCceEEeechhhcCCCCCCc
Confidence 1122333456678899999999999 99999999986531 1110 000 1 267778
Q ss_pred eeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCc---------------------------------
Q psy15549 356 SVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHAS--------------------------------- 402 (621)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------------------------- 402 (621)
+.+++|+| ++++|++++.||+|+|||+.+++
T Consensus 491 V~svafsp----------------dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (902)
T 2oaj_A 491 VDKISFAA----------------ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVR 554 (902)
T ss_dssp EEEEEEET----------------TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECG
T ss_pred eeEEEecC----------------CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccc
Confidence 99999988 88999999999999999998763
Q ss_pred ------------eeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCC-----cccC-CCCCcccccCCC-
Q psy15549 403 ------------PFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIG-----IPYV-PPSGEESKENDP- 463 (621)
Q Consensus 403 ------------~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~-----~~~~-~~~~~~~~~~~~- 463 (621)
++..+ .+|.+.|++++||||| +||+|+.||+|+|||+.++.++ ..+. +|...+..+.|+
T Consensus 555 ~~~~~~~~~g~~~~~~l-~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~ 632 (902)
T 2oaj_A 555 DRAPTGVRQGFMPSTAV-HANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVI 632 (902)
T ss_dssp GGCCTTCSEEEEEEEEE-CCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEE
T ss_pred ccCCCCCCCccceeEEE-EcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEE
Confidence 23444 4699999999999999 9999999999999999877553 3454 788889999999
Q ss_pred ----CCC---CCcccCCCcccHHHhcc
Q psy15549 464 ----TKG---EPVRSEDKPRSAEQAKG 483 (621)
Q Consensus 464 ----~~~---~~~~s~~~~~~~~~w~~ 483 (621)
+|| ..+++++.|+++++|++
T Consensus 633 ~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 633 MEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EecCCCCCcceEEEEEecCCcEEEEEE
Confidence 886 79999999999999997
No 33
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-39 Score=323.77 Aligned_cols=295 Identities=22% Similarity=0.292 Sum_probs=245.1
Q ss_pred eeecCCCCeEEEecccc-ccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 8 ISWHNRDPVLSVDIQLK-QEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 8 ~~~~h~~~v~~l~~spd-~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
.+.+|.++|++|+|+|+ ++ +||||+.|+.|+ |||+...+... ..+...+.+|...|.+
T Consensus 33 tL~GH~~~V~~v~~sp~~~~-----~l~S~s~D~~i~--------------vWd~~~~~~~~--~~~~~~l~~h~~~V~~ 91 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPD-----MILSASRDKTII--------------MWKLTRDETNY--GIPQRALRGHSHFVSD 91 (340)
T ss_dssp EECCCSSCEEEEEECTTCTT-----EEEEEETTSCEE--------------EEEECCSSSCS--EEEEEEECCCSSCEEE
T ss_pred EECCccCCEEEEEEeCCCCC-----EEEEEcCCCeEE--------------EEECCCCCccc--ceeeEEEeCCCCCEEE
Confidence 35679999999999998 56 999999999999 88887654322 2234568899999999
Q ss_pred EEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCC
Q psy15549 87 VRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLP 165 (621)
Q Consensus 87 l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~ 165 (621)
++|+|+|++|++++ |+.|++|+.... ........+...+..+.+++++.+|++++.|+.+++||+......
T Consensus 92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~- 163 (340)
T 4aow_A 92 VVISSDGQFALSGSWDGTLRLWDLTTG-------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY- 163 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-
T ss_pred EEECCCCCEEEEEcccccceEEeeccc-------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE-
Confidence 99999999999988 888999998876 555566678888999999999999999999999999998765432
Q ss_pred CCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCC--CEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEc
Q psy15549 166 EFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTS--THLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWD 243 (621)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s 243 (621)
.....+|...+.+++|++++ .++++++.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 164 -------------------~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s 224 (340)
T 4aow_A 164 -------------------TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS 224 (340)
T ss_dssp -------------------EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred -------------------EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEEC
Confidence 24456899999999999865 578899999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccC
Q psy15549 244 PKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLEN 323 (621)
Q Consensus 244 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~ 323 (621)
|++++|++|+.||.|++||+++.+.+..+.. ...+.++.|+|++.++
T Consensus 225 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~------------------------~~~v~~~~~~~~~~~~--------- 271 (340)
T 4aow_A 225 PDGSLCASGGKDGQAMLWDLNEGKHLYTLDG------------------------GDIINALCFSPNRYWL--------- 271 (340)
T ss_dssp TTSSEEEEEETTCEEEEEETTTTEEEEEEEC------------------------SSCEEEEEECSSSSEE---------
T ss_pred CCCCEEEEEeCCCeEEEEEeccCceeeeecC------------------------CceEEeeecCCCCcee---------
Confidence 9999999999999999999999887766532 2245677777765443
Q ss_pred CCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCce
Q psy15549 324 SDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASP 403 (621)
Q Consensus 324 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 403 (621)
+++.|+.|++||+.++..
T Consensus 272 --------------------------------------------------------------~~~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 272 --------------------------------------------------------------CAATGPSIKIWDLEGKII 289 (340)
T ss_dssp --------------------------------------------------------------EEEETTEEEEEETTTTEE
T ss_pred --------------------------------------------------------------eccCCCEEEEEECCCCeE
Confidence 334567788888877665
Q ss_pred eEEEe--------cccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCc
Q psy15549 404 FAFIA--------NIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNE 445 (621)
Q Consensus 404 ~~~~~--------~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~ 445 (621)
+..+. .+|...|++++|+|||++|++|+.||.|+||++.+|.
T Consensus 290 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 290 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 54442 3688899999999999999999999999999999875
No 34
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-40 Score=331.67 Aligned_cols=295 Identities=15% Similarity=0.173 Sum_probs=254.4
Q ss_pred eccccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCC
Q psy15549 73 FASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDES 151 (621)
Q Consensus 73 ~~~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg 151 (621)
....+.+|.+.|++++|+|++++|++|+ |+.|++|+.... .....+..|...|.+++|+|+|.+|++|+.|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~-------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~ 128 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT-------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDN 128 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------CEEEEEECSSSCCCEEEECTTSSEEEEESTTS
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------CcceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 3456899999999999999999999998 889999998766 45566777889999999999999999999999
Q ss_pred cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Q psy15549 152 TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILT 231 (621)
Q Consensus 152 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 231 (621)
.+++|++......... .....+.+|...|.+++|+|++..|++++.|++|++||+++++.+..+.
T Consensus 129 ~i~v~~~~~~~~~~~~---------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 129 KCSVYPLTFDKNENMA---------------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH 193 (354)
T ss_dssp EEEEEECCCCTTCCSG---------------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEEEecccccccc---------------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence 9999998765321100 0124566899999999999999999999999999999999999999999
Q ss_pred cCCcceEEEEEcC--CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecC
Q psy15549 232 EHKKFVQGVAWDP--KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSP 309 (621)
Q Consensus 232 ~~~~~v~~l~~sp--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 309 (621)
+|...|.+++|+| ++++|++|+.||.|++||+++++.+..+.. +...|.+++|+|
T Consensus 194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~-----------------------h~~~v~~v~~~p 250 (354)
T 2pbi_B 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET-----------------------HESDVNSVRYYP 250 (354)
T ss_dssp CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC-----------------------CSSCEEEEEECT
T ss_pred CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-----------------------CCCCeEEEEEeC
Confidence 9999999999987 578999999999999999999887776642 345678899999
Q ss_pred CCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEc
Q psy15549 310 DGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVAT 389 (621)
Q Consensus 310 dg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (621)
++.+|++++ .
T Consensus 251 ~~~~l~s~s----------------------------------------------------------------------~ 260 (354)
T 2pbi_B 251 SGDAFASGS----------------------------------------------------------------------D 260 (354)
T ss_dssp TSSEEEEEE----------------------------------------------------------------------T
T ss_pred CCCEEEEEe----------------------------------------------------------------------C
Confidence 887776655 6
Q ss_pred CCcEEEEeCCCCceeEEEec-ccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCC
Q psy15549 390 ENNILLYDTQHASPFAFIAN-IHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEP 468 (621)
Q Consensus 390 dg~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (621)
|+.|++||+..++.+..+.. .+...+++++|+|+|++|++|+.||.|++||+.+++....+..|...+..+.++|++..
T Consensus 261 D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~ 340 (354)
T 2pbi_B 261 DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTA 340 (354)
T ss_dssp TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSC
T ss_pred CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCE
Confidence 78888888888776655532 23357899999999999999999999999999999988899999999999999999999
Q ss_pred cccCCCcccHHHhc
Q psy15549 469 VRSEDKPRSAEQAK 482 (621)
Q Consensus 469 ~~s~~~~~~~~~w~ 482 (621)
+++++.|+.+++|+
T Consensus 341 l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 341 FCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEETTSEEEEEC
T ss_pred EEEEcCCCCEEecC
Confidence 99999999999994
No 35
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-40 Score=328.81 Aligned_cols=314 Identities=21% Similarity=0.269 Sum_probs=247.9
Q ss_pred eeccccccccC-cEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeC
Q psy15549 72 EFASDLSRHQK-AVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDD 149 (621)
Q Consensus 72 ~~~~~~~~h~~-~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~ 149 (621)
++...+.+|.. .|.+++|+|+|++||+|+ |+.|+||++..+... .......+|...|.+++|+|++++|++|+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~----~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~ 81 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI----CKSVLSEGHQRTVRKVAWSPCGNYLASASF 81 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE----EEEEECSSCSSCEEEEEECTTSSEEEEEET
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce----eeeeeccccCCcEEEEEECCCCCEEEEEEC
Confidence 44566889988 999999999999999988 889999999875210 112234689999999999999999999999
Q ss_pred CCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCc---E
Q psy15549 150 ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGK---N 226 (621)
Q Consensus 150 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~---~ 226 (621)
|++|++|++..... .....+.+|...|.+++|+|++++|++|+.|+.|++||+.++. +
T Consensus 82 D~~v~iw~~~~~~~-------------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~ 142 (345)
T 3fm0_A 82 DATTCIWKKNQDDF-------------------ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142 (345)
T ss_dssp TSCEEEEEECCC-E-------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred CCcEEEEEccCCCe-------------------EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE
Confidence 99999999876642 1236678999999999999999999999999999999998763 4
Q ss_pred EEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceee--eecccCCCCCCCccccccccccccccCCcccceee
Q psy15549 227 LGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVI--SRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRR 304 (621)
Q Consensus 227 ~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 304 (621)
+..+..|...|.+++|+|++++|++++.|+.|++||+.++... ..+ ..+...|.+
T Consensus 143 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~-----------------------~~h~~~v~~ 199 (345)
T 3fm0_A 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL-----------------------EGHESTVWS 199 (345)
T ss_dssp EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE-----------------------CCCSSCEEE
T ss_pred EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe-----------------------cCCCCceEE
Confidence 5677889999999999999999999999999999999876532 233 245567899
Q ss_pred eeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEE
Q psy15549 305 LTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIV 384 (621)
Q Consensus 305 ~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 384 (621)
++|+|+|++|++++ .|+.+++|+..... ....+.
T Consensus 200 l~~sp~g~~l~s~s-----~D~~v~iW~~~~~~--------------~~~~~~--------------------------- 233 (345)
T 3fm0_A 200 LAFDPSGQRLASCS-----DDRTVRIWRQYLPG--------------NEQGVA--------------------------- 233 (345)
T ss_dssp EEECTTSSEEEEEE-----TTSCEEEEEEECTT--------------CTTCCC---------------------------
T ss_pred EEECCCCCEEEEEe-----CCCeEEEeccccCC--------------CCccce---------------------------
Confidence 99999999999998 89999999854210 000000
Q ss_pred EEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCC---------cccCCCCC
Q psy15549 385 IAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIG---------IPYVPPSG 455 (621)
Q Consensus 385 ~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~---------~~~~~~~~ 455 (621)
..+.+.. .+.+..+...|...|.+++|+|++..|++++.|+.|++|+...+... .....|..
T Consensus 234 -~~~~~~~--------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~ 304 (345)
T 3fm0_A 234 -CSGSDPS--------WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ 304 (345)
T ss_dssp -CC---CE--------EEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS
T ss_pred -eeccCCc--------cceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC
Confidence 0000000 11233343458889999999999999999999999999999865321 12356888
Q ss_pred cccccCCCCCCC-CcccCCCcccHHHhcccCc
Q psy15549 456 EESKENDPTKGE-PVRSEDKPRSAEQAKGEGK 486 (621)
Q Consensus 456 ~~~~~~~~~~~~-~~~s~~~~~~~~~w~~~~~ 486 (621)
.+..+.|+|++. .+++++.|+.|++|+...+
T Consensus 305 ~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 305 DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp CEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred cEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 899999999985 7899999999999997654
No 36
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.8e-40 Score=369.81 Aligned_cols=372 Identities=18% Similarity=0.218 Sum_probs=297.4
Q ss_pred CccccceeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccc
Q psy15549 1 MKCTIPEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRH 80 (621)
Q Consensus 1 m~~~~~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h 80 (621)
|+++......+|.++|.+++|+|+++ +||+|+.||.|+ |||+.++... ..+.+|
T Consensus 1 m~l~~~~~~~~h~~~v~~i~~sp~~~-----~la~~~~~g~v~--------------iwd~~~~~~~-------~~~~~~ 54 (814)
T 3mkq_A 1 MKLDIKKTFSNRSDRVKGIDFHPTEP-----WVLTTLYSGRVE--------------IWNYETQVEV-------RSIQVT 54 (814)
T ss_dssp -CCCCEEEEEEECSCEEEEEECSSSS-----EEEEEETTSEEE--------------EEETTTTEEE-------EEEECC
T ss_pred CCcccceeeecCCCceEEEEECCCCC-----EEEEEeCCCEEE--------------EEECCCCceE-------EEEecC
Confidence 78888888999999999999999998 999999999999 9988776543 347889
Q ss_pred cCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEcc
Q psy15549 81 QKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQK 159 (621)
Q Consensus 81 ~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~ 159 (621)
.+.|.+++|+|++++|++++ ++.|++|++..+ .....+.+|...|++++|+|++++|++++.||.|++||+.
T Consensus 55 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 127 (814)
T 3mkq_A 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG-------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127 (814)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGG
T ss_pred CCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECC
Confidence 99999999999999999988 888999999877 5667788899999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEeccCC-cce
Q psy15549 160 TDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP-TSTHLISGSVDNTAIMWDVHKGKNLGILTEHK-KFV 237 (621)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v 237 (621)
++.. ....+.+|...|.+++|+| ++..|++++.||.|++||+.++.....+..+. ..+
T Consensus 128 ~~~~--------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v 187 (814)
T 3mkq_A 128 NNWA--------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187 (814)
T ss_dssp GTSE--------------------EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCC
T ss_pred CCce--------------------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCE
Confidence 7632 2366778999999999999 88999999999999999999888777776554 889
Q ss_pred EEEEEcC--CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEE
Q psy15549 238 QGVAWDP--KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLI 315 (621)
Q Consensus 238 ~~l~~sp--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~ 315 (621)
.+++|+| ++.+|++++.||.|++||+.+++.+..+.. +...|.+++|+|++.+++
T Consensus 188 ~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-----------------------~~~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG-----------------------HMSNVSFAVFHPTLPIII 244 (814)
T ss_dssp CEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC-----------------------CSSCEEEEEECSSSSEEE
T ss_pred EEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC-----------------------CCCCEEEEEEcCCCCEEE
Confidence 9999999 999999999999999999999888776643 344579999999999999
Q ss_pred eccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcE-EEEEEcCCcEE
Q psy15549 316 APSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRI-VIAVATENNIL 394 (621)
Q Consensus 316 ~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~ 394 (621)
+++ .|+.+++|+.... .....+..+...+.++.|+| ++.. +++++.++.+.
T Consensus 245 ~~~-----~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~----------------~~~~~~~~~~~~~~~~ 296 (814)
T 3mkq_A 245 SGS-----EDGTLKIWNSSTY-------KVEKTLNVGLERSWCIATHP----------------TGRKNYIASGFDNGFT 296 (814)
T ss_dssp EEE-----TTSCEEEEETTTC-------SEEEEECCSSSSEEEEEECT----------------TCGGGEEEEEETTEEE
T ss_pred EEe-----CCCeEEEEECCCC-------cEEEEeecCCCcEEEEEEcc----------------CCCceEEEEEeCCCEE
Confidence 999 8999999987532 23334555666777777776 3332 46666677777
Q ss_pred EEeCCCCceeEEEe------------------------------------------cccccceEEEEEcCCCCeEEEEeC
Q psy15549 395 LYDTQHASPFAFIA------------------------------------------NIHYTKLTDITWSSDGKVLIASST 432 (621)
Q Consensus 395 iwd~~~~~~~~~~~------------------------------------------~~h~~~v~~~~~spdg~~l~s~s~ 432 (621)
+|++........+. ..+...+.+++|+|+|++|++++
T Consensus 297 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~- 375 (814)
T 3mkq_A 297 VLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG- 375 (814)
T ss_dssp EEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-
T ss_pred EEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-
Confidence 78765432221110 12444678999999999999888
Q ss_pred CCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCCcccCCCcccHHHhc
Q psy15549 433 DGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEPVRSEDKPRSAEQAK 482 (621)
Q Consensus 433 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~ 482 (621)
||.+.+|++..... .+.+.+..+.|+|++..++.++.++.+++|+
T Consensus 376 ~~~~~i~~~~~~~~-----~~~~~i~~~~~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 376 DGEYVIYTALAWRN-----KAFGKCQDFVWGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp TTEEEEEETTTTEE-----EEEEECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred CCEEEEEECccccc-----cCCCceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence 89999999653221 1223455566666666666666666666664
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-41 Score=343.33 Aligned_cols=333 Identities=13% Similarity=0.181 Sum_probs=272.1
Q ss_pred ecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEe----ccccccc---cceeecccc-----
Q psy15549 10 WHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYL----TERESGI---ANVEFASDL----- 77 (621)
Q Consensus 10 ~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~----~~~~~~~---~~~~~~~~~----- 77 (621)
..|.++|++++|+|+++ .+||+|+.||.|+ +|++ .++.... ....+...+
T Consensus 42 ~~~~~~v~~~~~s~~~~----~~l~~~~~dg~i~--------------iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDE----SILAYGEKNSVAR--------------LARIVETDQEGKKYWKLTIIAELRHPFALSAS 103 (425)
T ss_dssp EEECSCCSEEEECSSCT----TEEEEEETBTEEE--------------EEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred eeccCceEEEEECCCCC----cEEEEecCCceEE--------------EEEEecccCCcccccccccccccccccccccc
Confidence 34668999999999985 4899999999999 6666 4433100 001111112
Q ss_pred -ccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEE
Q psy15549 78 -SRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIV 155 (621)
Q Consensus 78 -~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~v 155 (621)
.+|.+.|.+++|+|++++|++++ ++.|++|+. .+ .....+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 104 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TG-------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp ----CBCEEEEEECTTSSEEEEEETTSCEEEEET-TS-------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CC-------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEE
Confidence 23688999999999999999988 888999993 32 556677889999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCC---------------eEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15549 156 WKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLED---------------VYDISWSPTSTHLISGSVDNTAIMWD 220 (621)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~i~~spd~~~l~s~~~dg~i~vwd 220 (621)
||+.+++.+ ..+..+... +.+++|+|++ .+++++.+|.|++||
T Consensus 176 wd~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d 233 (425)
T 1r5m_A 176 WNVISGTVM---------------------QHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQ 233 (425)
T ss_dssp EETTTTEEE---------------------EEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEE
T ss_pred EECCCCcEE---------------------EEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEE
Confidence 999887654 233334333 8999999875 688899999999999
Q ss_pred CCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCccc
Q psy15549 221 VHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKS 300 (621)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (621)
+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+. .+..
T Consensus 234 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----------------------~~~~ 290 (425)
T 1r5m_A 234 ITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY-----------------------GHSQ 290 (425)
T ss_dssp TTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC-----------------------CCSS
T ss_pred cCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEec-----------------------CCCc
Confidence 99999999999999999999999999999999999999999999877665553 2344
Q ss_pred ceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCC
Q psy15549 301 FFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLP 380 (621)
Q Consensus 301 ~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (621)
.|.+++|+|++ ++++
T Consensus 291 ~i~~~~~~~~~-~l~~---------------------------------------------------------------- 305 (425)
T 1r5m_A 291 SIVSASWVGDD-KVIS---------------------------------------------------------------- 305 (425)
T ss_dssp CEEEEEEETTT-EEEE----------------------------------------------------------------
T ss_pred cEEEEEECCCC-EEEE----------------------------------------------------------------
Confidence 56888888877 5544
Q ss_pred CcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCc---------------
Q psy15549 381 YRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNE--------------- 445 (621)
Q Consensus 381 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~--------------- 445 (621)
++.|+.|++||+.+++.+..+. .|...|.+++|+|+|++|++++.||.|++|++.++.
T Consensus 306 ------~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 378 (425)
T 1r5m_A 306 ------CSMDGSVRLWSLKQNTLLALSI-VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILN 378 (425)
T ss_dssp ------EETTSEEEEEETTTTEEEEEEE-CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------
T ss_pred ------EeCCCcEEEEECCCCcEeEecc-cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccC
Confidence 4478999999999999888774 588999999999999999999999999999999888
Q ss_pred -----CCcccCCCCC--cccccCCCCCCCCcccCCCcccHHHhcccC
Q psy15549 446 -----IGIPYVPPSG--EESKENDPTKGEPVRSEDKPRSAEQAKGEG 485 (621)
Q Consensus 446 -----~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~w~~~~ 485 (621)
+...+..+.. .+..+.+++++..+++++.++.+++|++++
T Consensus 379 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 379 PLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred cccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 7788888866 899999999999999999999999998764
No 38
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3e-40 Score=339.49 Aligned_cols=313 Identities=13% Similarity=0.163 Sum_probs=242.2
Q ss_pred eeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEE
Q psy15549 8 ISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVV 87 (621)
Q Consensus 8 ~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l 87 (621)
....|...|+||+|+|... .+||+|+.||.|+ |||+..+.... ...+.+|.+.|++|
T Consensus 114 ~~~~~~~~V~~l~~~P~~~----~~lasGs~dg~i~--------------lWd~~~~~~~~-----~~~~~gH~~~V~~l 170 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHP----STVAVGSKGGDIM--------------LWNFGIKDKPT-----FIKGIGAGGSITGL 170 (435)
T ss_dssp EEEECSSCEEEEEECSSCT----TCEEEEETTSCEE--------------EECSSCCSCCE-----EECCCSSSCCCCEE
T ss_pred cCCCCCCCEEEEEEeCCCC----CEEEEEeCCCEEE--------------EEECCCCCcee-----EEEccCCCCCEEEE
Confidence 4456888999999999543 3899999999999 88887664322 23467899999999
Q ss_pred EEcc-CCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCC
Q psy15549 88 RFSP-NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLP 165 (621)
Q Consensus 88 ~~sp-dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~ 165 (621)
+|+| ++.+|++|+ |+.|++||+.... .........+...+.+++|+|++++|++|+.||.|++||+.... +
T Consensus 171 ~f~p~~~~~l~s~s~D~~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~- 243 (435)
T 4e54_B 171 KFNPLNTNQFYASSMEGTTRLQDFKGNI-----LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-L- 243 (435)
T ss_dssp EECSSCTTEEEEECSSSCEEEEETTSCE-----EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-C-
T ss_pred EEeCCCCCEEEEEeCCCEEEEeeccCCc-----eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-e-
Confidence 9998 789999998 8999999987641 12222333455578899999999999999999999999986542 2
Q ss_pred CCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEE---eccCCcceEEEE
Q psy15549 166 EFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTST-HLISGSVDNTAIMWDVHKGKNLGI---LTEHKKFVQGVA 241 (621)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~v~~l~ 241 (621)
..+.+|...|++++|+|++. +|++|+.|+.|++||+++.+.... ..+|...|.+++
T Consensus 244 --------------------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 303 (435)
T 4e54_B 244 --------------------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 303 (435)
T ss_dssp --------------------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECC
T ss_pred --------------------EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccccccee
Confidence 44578999999999999876 788999999999999988764433 357899999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccc
Q psy15549 242 WDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCL 321 (621)
Q Consensus 242 ~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~ 321 (621)
|+|+|++|++++.||.|++||+.++.....+..+..... ....+..+.|+|++.+++++..
T Consensus 304 ~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~-- 364 (435)
T 4e54_B 304 FSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF-----------------QHLTPIKAAWHPRYNLIVVGRY-- 364 (435)
T ss_dssp BCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC-----------------SSSCCCBCEECSSSSCEEEECC--
T ss_pred ECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc-----------------ccceeEEEEEcCCCCEEEEEEc--
Confidence 999999999999999999999999887766644332110 0112345788999988887652
Q ss_pred cCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCC
Q psy15549 322 ENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHA 401 (621)
Q Consensus 322 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 401 (621)
.++.+.++ ++..++.|++||..++
T Consensus 365 --~d~~~~~~------------------------------------------------------~~~~~~~i~iwd~~~g 388 (435)
T 4e54_B 365 --PDPNFKSC------------------------------------------------------TPYELRTIDVFDGNSG 388 (435)
T ss_dssp --CCTTSCCS------------------------------------------------------STTCCCCEEEECSSSC
T ss_pred --CCCCeEEE------------------------------------------------------EecCCCEEEEEECCCC
Confidence 22222111 1224568999999999
Q ss_pred ceeEEEecccccceEEE-EEcCCCCeEEEEeCCCcEEEEEecCCcC
Q psy15549 402 SPFAFIANIHYTKLTDI-TWSSDGKVLIASSTDGYCSIISFGDNEI 446 (621)
Q Consensus 402 ~~~~~~~~~h~~~v~~~-~~spdg~~l~s~s~dg~i~iw~~~~~~~ 446 (621)
+.+..+..+|...|.++ +|+|+|++|++|+ |+.|+||++.+++.
T Consensus 389 ~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 389 KMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred cEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 99998877898999988 6999999999876 88999999998765
No 39
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-39 Score=323.42 Aligned_cols=320 Identities=16% Similarity=0.249 Sum_probs=261.4
Q ss_pred ceeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEE
Q psy15549 6 PEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVN 85 (621)
Q Consensus 6 ~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 85 (621)
+..+.+|.++|++++|+|+++ +|++|+.||.|+ +||+.++... ..+.+|...|.
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~-----~l~~~~~dg~i~--------------vwd~~~~~~~-------~~~~~h~~~v~ 78 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGD-----LLFSCSKDSSAS--------------VWYSLNGERL-------GTLDGHTGTIW 78 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSC-----EEEEEESSSCEE--------------EEETTTCCEE-------EEECCCSSCEE
T ss_pred cEEEEEeeceEEEEEEcCCCC-----EEEEEeCCCEEE--------------EEeCCCchhh-------hhhhhcCCcEE
Confidence 345677999999999999998 999999999999 9988776543 34789999999
Q ss_pred EEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCC-----CcEEEEEcc
Q psy15549 86 VVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE-----STIIVWKQK 159 (621)
Q Consensus 86 ~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~d-----g~i~vwd~~ 159 (621)
+++|+|++++|++++ |+.|++|++..+ .....+. |...|.+++|+|++++|++++.+ +.|++||+.
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 79 SIDVDCFTKYCVTGSADYSIKLWDVSNG-------QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTC-------CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCC-------cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 999999999999988 888999999876 4444444 88899999999999999999998 999999998
Q ss_pred CCCCCCCCCCCCcccccccccceeeeeeecCCCC--CeEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEEEeccCCcc
Q psy15549 160 TDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLE--DVYDISWSPTSTHLISGSVDNTAIMWDVHK-GKNLGILTEHKKF 236 (621)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~spd~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~ 236 (621)
.......+... .......+..|.. .+.+++|+|++++|++++.||.|++||+.+ +..+..+..|...
T Consensus 151 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 220 (369)
T 3zwl_B 151 RDSATHELTKV----------SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS 220 (369)
T ss_dssp ECTTTCCEEEE----------CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC
T ss_pred CCccceeeccc----------ccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc
Confidence 87654332100 0011234455665 899999999999999999999999999998 7888889999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEe
Q psy15549 237 VQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIA 316 (621)
Q Consensus 237 v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~ 316 (621)
|.+++|+|++++|++++.|+.|++||+++++.+..+. ....+.+++|+|+++++++
T Consensus 221 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 221 ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE------------------------TDCPLNTAVITPLKEFIIL 276 (369)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------------------------CSSCEEEEEECSSSSEEEE
T ss_pred eeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec------------------------CCCCceeEEecCCCceEEE
Confidence 9999999999999999999999999999988777663 2345789999999999999
Q ss_pred ccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEE
Q psy15549 317 PSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLY 396 (621)
Q Consensus 317 ~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 396 (621)
++ .++...+|... .......+++|
T Consensus 277 ~~-----~~~~~~~~~~~---------------------------------------------------~~~~~~~i~~~ 300 (369)
T 3zwl_B 277 GG-----GQEAKDVTTTS---------------------------------------------------ANEGKFEARFY 300 (369)
T ss_dssp EE-----CCC----------------------------------------------------------------CEEEEE
T ss_pred ee-----cCCCceEEEEe---------------------------------------------------cCCCcceeEEE
Confidence 88 44444433321 01123479999
Q ss_pred eCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCccc
Q psy15549 397 DTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPY 450 (621)
Q Consensus 397 d~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~ 450 (621)
|..+++.+..+ .+|...|++++|+|+|++|++++.||.|++|++..+.+...+
T Consensus 301 d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 301 HKIFEEEIGRV-QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp ETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred ecCCCcchhhe-ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 99999999888 469999999999999999999999999999999987654443
No 40
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-39 Score=319.50 Aligned_cols=292 Identities=25% Similarity=0.378 Sum_probs=252.7
Q ss_pred eeccccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCC
Q psy15549 72 EFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE 150 (621)
Q Consensus 72 ~~~~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~d 150 (621)
.+...+.+|...|++++|+|++++|++++ |+.|++|+...+ .....+.+|...|.+++|+|++++|++|+.|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 86 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSSDSNLLVSASDD 86 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-------ccchhhccCCCceEEEEEcCCCCEEEEECCC
Confidence 34556889999999999999999999988 889999998876 5566788999999999999999999999999
Q ss_pred CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q psy15549 151 STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGIL 230 (621)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~ 230 (621)
+.|++||+.+++.+ ..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+
T Consensus 87 ~~i~vwd~~~~~~~---------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 145 (312)
T 4ery_A 87 KTLKIWDVSSGKCL---------------------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145 (312)
T ss_dssp SEEEEEETTTCCEE---------------------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCcEE---------------------EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe
Confidence 99999999988743 667889999999999999999999999999999999999999999
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCC
Q psy15549 231 TEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPD 310 (621)
Q Consensus 231 ~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd 310 (621)
..|...|.+++|+|++++|++++.||.|++||+++++.+..+.. .....+..++|+|+
T Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~ 203 (312)
T 4ery_A 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID----------------------DDNPPVSFVKFSPN 203 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC----------------------SSCCCEEEEEECTT
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEec----------------------cCCCceEEEEECCC
Confidence 99999999999999999999999999999999998877665421 12334677888888
Q ss_pred CCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcC
Q psy15549 311 GQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATE 390 (621)
Q Consensus 311 g~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 390 (621)
+++|++++ .|
T Consensus 204 ~~~l~~~~----------------------------------------------------------------------~d 213 (312)
T 4ery_A 204 GKYILAAT----------------------------------------------------------------------LD 213 (312)
T ss_dssp SSEEEEEE----------------------------------------------------------------------TT
T ss_pred CCEEEEEc----------------------------------------------------------------------CC
Confidence 77766544 78
Q ss_pred CcEEEEeCCCCceeEEEecccccce---EEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCC
Q psy15549 391 NNILLYDTQHASPFAFIANIHYTKL---TDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGE 467 (621)
Q Consensus 391 g~i~iwd~~~~~~~~~~~~~h~~~v---~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (621)
+.|++||+.+++.+..+. +|...+ ......+++.+|++|+.||.|++||+.++++...+.+|...+..+.++|++.
T Consensus 214 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~ 292 (312)
T 4ery_A 214 NTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 292 (312)
T ss_dssp TEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSS
T ss_pred CeEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCC
Confidence 899999999998887774 465443 2333446789999999999999999999999999999999999999999999
Q ss_pred CcccCC--CcccHHHhccc
Q psy15549 468 PVRSED--KPRSAEQAKGE 484 (621)
Q Consensus 468 ~~~s~~--~~~~~~~w~~~ 484 (621)
.+++++ .|+.+++|+..
T Consensus 293 ~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 293 IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEEECTTTCCEEEEECC
T ss_pred ceEEEEccCCccEEEecCC
Confidence 888775 69999999753
No 41
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.6e-39 Score=352.82 Aligned_cols=296 Identities=24% Similarity=0.355 Sum_probs=241.1
Q ss_pred eeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 7 EISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 7 ~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
..+..|.+.|++|+|+|++. .+|++|+.|+.|+ ||++....... ......+.+|...|.+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~----~~l~s~s~D~~i~--------------~W~~~~~~~~~--~~~~~~~~~h~~~v~~ 435 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNA----DIIVSASRDKSII--------------LWKLTKDDKAY--GVAQRRLTGHSHFVED 435 (694)
T ss_dssp EEEECCSSCEEEEECCTTCC----SEEEEEETTSEEE--------------EEECCCSTTCS--CEEEEEEECCSSCEEE
T ss_pred hhcccCCceeEEEEecCCCC----CEEEEEeCCCcEE--------------EEEccCCCccc--ccccceecCCCCcEEE
Confidence 35668999999999999763 3999999999999 88887543221 1123457899999999
Q ss_pred EEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCC
Q psy15549 87 VRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLP 165 (621)
Q Consensus 87 l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~ 165 (621)
++|+|+|++|++|+ |+.|+||++..+ .....+.+|...|.+++|+|++++|++|+.|++|++||+.......
T Consensus 436 v~~s~~g~~l~sgs~Dg~v~vwd~~~~-------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~ 508 (694)
T 3dm0_A 436 VVLSSDGQFALSGSWDGELRLWDLAAG-------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT 508 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCC-------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee
Confidence 99999999999998 889999999876 6677788999999999999999999999999999999975442210
Q ss_pred CCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCC--CEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEc
Q psy15549 166 EFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTS--THLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWD 243 (621)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s 243 (621)
......+|...|.+++|+|++ ..|++++.|+.|++||+++++....+.+|.+.|.+++|+
T Consensus 509 ------------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s 570 (694)
T 3dm0_A 509 ------------------ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS 570 (694)
T ss_dssp ------------------ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred ------------------eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe
Confidence 112235789999999999987 689999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccC
Q psy15549 244 PKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLEN 323 (621)
Q Consensus 244 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~ 323 (621)
|++++|++++.||.|++||+++++.+..+. ....|.+++|+|++.+++++.
T Consensus 571 pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~------------------------~~~~v~~~~~sp~~~~l~~~~----- 621 (694)
T 3dm0_A 571 PDGSLCASGGKDGVVLLWDLAEGKKLYSLE------------------------ANSVIHALCFSPNRYWLCAAT----- 621 (694)
T ss_dssp TTSSEEEEEETTSBCEEEETTTTEEEECCB------------------------CSSCEEEEEECSSSSEEEEEE-----
T ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEec------------------------CCCcEEEEEEcCCCcEEEEEc-----
Confidence 999999999999999999999998776553 123578899999987776543
Q ss_pred CCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCce
Q psy15549 324 SDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASP 403 (621)
Q Consensus 324 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 403 (621)
++.|++||+.++..
T Consensus 622 ------------------------------------------------------------------~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 622 ------------------------------------------------------------------EHGIKIWDLESKSI 635 (694)
T ss_dssp ------------------------------------------------------------------TTEEEEEETTTTEE
T ss_pred ------------------------------------------------------------------CCCEEEEECCCCCC
Confidence 33455555555554
Q ss_pred eEEEec------------------ccccceEEEEEcCCCCeEEEEeCCCcEEEEEec
Q psy15549 404 FAFIAN------------------IHYTKLTDITWSSDGKVLIASSTDGYCSIISFG 442 (621)
Q Consensus 404 ~~~~~~------------------~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~ 442 (621)
+..+.. .+...+++++|+|||++|++|+.||.|++|++.
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 636 VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 443321 122247899999999999999999999999985
No 42
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-40 Score=336.28 Aligned_cols=300 Identities=20% Similarity=0.315 Sum_probs=251.2
Q ss_pred eccccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCC
Q psy15549 73 FASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDES 151 (621)
Q Consensus 73 ~~~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg 151 (621)
....+.+|.+.|++++|+|++++|++|+ |+.|+||+...+ .....+..|...|.+++|+|++++|++|+.|+
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~-------~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS-------QKTHAIKLHCPWVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-------EEEEEEECCCTTCCCCEECTTSSEEEECCSSS
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------ccceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 3456899999999999999999999998 889999999876 66777889999999999999999999999999
Q ss_pred cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEe
Q psy15549 152 TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT-STHLISGSVDNTAIMWDVHKGKNLGIL 230 (621)
Q Consensus 152 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~ 230 (621)
.|++|++.+...... .......+.+|...|.++.|+|+ +..|++|+.|+.|++||+.+++.+..+
T Consensus 131 ~v~iw~~~~~~~~~~--------------~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 196 (380)
T 3iz6_a 131 ACSIFNLSSQADRDG--------------NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196 (380)
T ss_dssp CCEEEECCCCSSCCC--------------SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE
T ss_pred cEEEEECCCCccccC--------------CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe
Confidence 999999976432110 00012557799999999999996 457999999999999999999998877
Q ss_pred -----ccCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEccC-ceeeeecccCCCCCCCccccccccccccccCCccccee
Q psy15549 231 -----TEHKKFVQGVAWDP-KNQYVATLSSDRSLRTYSIQS-KKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFR 303 (621)
Q Consensus 231 -----~~~~~~v~~l~~sp-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 303 (621)
.+|...|.+++|++ ++++|++|+.|+.|++||++. +..+..+. .|...|.
T Consensus 197 ~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-----------------------~h~~~v~ 253 (380)
T 3iz6_a 197 GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-----------------------GHEGDIN 253 (380)
T ss_dssp CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-----------------------CCSSCCC
T ss_pred ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-----------------------CcCCCeE
Confidence 57889999999987 889999999999999999974 34444443 3455678
Q ss_pred eeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcE
Q psy15549 304 RLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRI 383 (621)
Q Consensus 304 ~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (621)
+++|+|++++|++++
T Consensus 254 ~v~~~p~~~~l~s~s----------------------------------------------------------------- 268 (380)
T 3iz6_a 254 SVKFFPDGQRFGTGS----------------------------------------------------------------- 268 (380)
T ss_dssp EEEECTTSSEEEEEC-----------------------------------------------------------------
T ss_pred EEEEecCCCeEEEEc-----------------------------------------------------------------
Confidence 999999988877766
Q ss_pred EEEEEcCCcEEEEeCCCCceeEEEecc------cccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCccc----CCC
Q psy15549 384 VIAVATENNILLYDTQHASPFAFIANI------HYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPY----VPP 453 (621)
Q Consensus 384 l~~~~~dg~i~iwd~~~~~~~~~~~~~------h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~----~~~ 453 (621)
.|+.|++||+.++..+..+... +...|++++|+|+|++|++|+.||.|++||+.+++....+ ..|
T Consensus 269 -----~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h 343 (380)
T 3iz6_a 269 -----DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343 (380)
T ss_dssp -----SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC
T ss_pred -----CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC
Confidence 6788888888888777665321 2235899999999999999999999999999988776555 568
Q ss_pred CCcccccCCCCCCCCcccCCCcccHHHhcccCc
Q psy15549 454 SGEESKENDPTKGEPVRSEDKPRSAEQAKGEGK 486 (621)
Q Consensus 454 ~~~~~~~~~~~~~~~~~s~~~~~~~~~w~~~~~ 486 (621)
...+..+.++|+|..+++++.|+.+++|++.+.
T Consensus 344 ~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 344 EGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 888999999999999999999999999997654
No 43
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.5e-39 Score=317.97 Aligned_cols=293 Identities=18% Similarity=0.259 Sum_probs=246.6
Q ss_pred eeccccccccCcEEEEEEccCC-CEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeC
Q psy15549 72 EFASDLSRHQKAVNVVRFSPNG-ELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDD 149 (621)
Q Consensus 72 ~~~~~~~~h~~~V~~l~~spdg-~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~ 149 (621)
.+..++.+|.+.|++++|+|++ ++|++|+ |+.|++|++...... ....+..+.+|...|.+++|+|++++|++|+.
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~--~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--FGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE--EEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc--ccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 3455789999999999999965 8999988 889999998754211 11345678899999999999999999999999
Q ss_pred CCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q psy15549 150 ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGI 229 (621)
Q Consensus 150 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~ 229 (621)
|++|++||+.+++.+ ..+.+|...|.+++|+|++.+|++|+.|+.|++||++ +.++..
T Consensus 86 D~~v~~wd~~~~~~~---------------------~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~ 143 (319)
T 3frx_A 86 DKTLRLWDVATGETY---------------------QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT 143 (319)
T ss_dssp TSEEEEEETTTTEEE---------------------EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEE
T ss_pred CCEEEEEECCCCCee---------------------EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEE
Confidence 999999999988743 6678999999999999999999999999999999995 667788
Q ss_pred eccCCcceEEEEEcCC------CCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCccccee
Q psy15549 230 LTEHKKFVQGVAWDPK------NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFR 303 (621)
Q Consensus 230 ~~~~~~~v~~l~~sp~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 303 (621)
+.+|...|.+++|+|. +.+|++++.|+.|++||+++.+....+. .+...|.
T Consensus 144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----------------------~h~~~v~ 200 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-----------------------GHNSNIN 200 (319)
T ss_dssp ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-----------------------CCCSCEE
T ss_pred EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-----------------------CCCCcEE
Confidence 8899999999999985 4589999999999999999887766554 3345678
Q ss_pred eeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcE
Q psy15549 304 RLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRI 383 (621)
Q Consensus 304 ~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (621)
+++|+|+|++|++++
T Consensus 201 ~~~~sp~g~~l~s~~----------------------------------------------------------------- 215 (319)
T 3frx_A 201 TLTASPDGTLIASAG----------------------------------------------------------------- 215 (319)
T ss_dssp EEEECTTSSEEEEEE-----------------------------------------------------------------
T ss_pred EEEEcCCCCEEEEEe-----------------------------------------------------------------
Confidence 899999888777654
Q ss_pred EEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCC--------CCC
Q psy15549 384 VIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVP--------PSG 455 (621)
Q Consensus 384 l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~--------~~~ 455 (621)
.|+.|++||+.+++.+..+. +...|.+++|+|++.+|++++.+ .+++|++..+.+...+.. +..
T Consensus 216 -----~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (319)
T 3frx_A 216 -----KDGEIMLWNLAAKKAMYTLS--AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287 (319)
T ss_dssp -----TTCEEEEEETTTTEEEEEEE--CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCC
T ss_pred -----CCCeEEEEECCCCcEEEEec--CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCc
Confidence 78999999999999888874 45689999999999999988755 599999987765544432 234
Q ss_pred cccccCCCCCCCCcccCCCcccHHHhccc
Q psy15549 456 EESKENDPTKGEPVRSEDKPRSAEQAKGE 484 (621)
Q Consensus 456 ~~~~~~~~~~~~~~~s~~~~~~~~~w~~~ 484 (621)
.+..+.|+|+|+.+++++.|+.|++|++.
T Consensus 288 ~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 288 HAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred ceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 45678999999999999999999999864
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.1e-40 Score=336.78 Aligned_cols=323 Identities=15% Similarity=0.159 Sum_probs=263.4
Q ss_pred CeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCC
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 94 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 94 (621)
.+++++|+|+++ +|++|+.||.|+ +|++.+...... +..| ..+....|+++++
T Consensus 58 ~~~~~~~s~~g~-----~l~~~~~d~~v~--------------i~d~~~~~~~~~-------~~~~-~~~~~~~~~~~~~ 110 (420)
T 3vl1_A 58 AGKGNTFEKVGS-----HLYKARLDGHDF--------------LFNTIIRDGSKM-------LKRA-DYTAVDTAKLQMR 110 (420)
T ss_dssp CCTTCEEEEEET-----TEEEEEETTEEE--------------EEECCSEETTTT-------SCSC-CEEEEEEECSSSC
T ss_pred cccceeeeecCC-----eEEEEEcCCcEE--------------EEEecccceeeE-------EecC-CceEEEEEecCCC
Confidence 456899999999 999999999999 998877655332 4555 4556667899999
Q ss_pred EEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcc
Q psy15549 95 LLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLD 173 (621)
Q Consensus 95 ~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 173 (621)
+|++|+ ++.|++|++..+ .....+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+
T Consensus 111 ~l~~~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--------- 174 (420)
T 3vl1_A 111 RFILGTTEGDIKVLDSNFN-------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP--------- 174 (420)
T ss_dssp EEEEEETTSCEEEECTTSC-------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC---------
T ss_pred EEEEEECCCCEEEEeCCCc-------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc---------
Confidence 999988 888999998866 556667899999999999999999999999999999999988754
Q ss_pred cccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEecc---CCcceE------------
Q psy15549 174 EENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTE---HKKFVQ------------ 238 (621)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~------------ 238 (621)
..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.. +...|.
T Consensus 175 ------------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 242 (420)
T 3vl1_A 175 ------------RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL 242 (420)
T ss_dssp ------------EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC
T ss_pred ------------eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee
Confidence 56678999999999999999999999999999999999999888864 333444
Q ss_pred ---------EEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecC
Q psy15549 239 ---------GVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSP 309 (621)
Q Consensus 239 ---------~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 309 (621)
+++|+|++++|++++.||.|++||+++++.+..+.. .+...|.+++|+|
T Consensus 243 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------~~~~~v~~~~~~~ 300 (420)
T 3vl1_A 243 HEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS----------------------KFTCSCNSLTVDG 300 (420)
T ss_dssp GGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC----------------------TTSSCEEEEEECS
T ss_pred eecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc----------------------ccCCCceeEEEeC
Confidence 455578999999999999999999998876655421 2345678899988
Q ss_pred CCC-eEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEE
Q psy15549 310 DGQ-LLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVA 388 (621)
Q Consensus 310 dg~-~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (621)
++. +|++ ++
T Consensus 301 ~~~~~l~~----------------------------------------------------------------------g~ 310 (420)
T 3vl1_A 301 NNANYIYA----------------------------------------------------------------------GY 310 (420)
T ss_dssp SCTTEEEE----------------------------------------------------------------------EE
T ss_pred CCCCEEEE----------------------------------------------------------------------Ee
Confidence 877 5554 44
Q ss_pred cCCcEEEEeCCCCce-eEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCc---------CCcccCCCCCccc
Q psy15549 389 TENNILLYDTQHASP-FAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNE---------IGIPYVPPSGEES 458 (621)
Q Consensus 389 ~dg~i~iwd~~~~~~-~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~---------~~~~~~~~~~~~~ 458 (621)
.||.|++||+.+++. +..+...|...|.++.| +++++|++++.||.|++|++.... ....+..+...+.
T Consensus 311 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 389 (420)
T 3vl1_A 311 ENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVS 389 (420)
T ss_dssp TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCC
T ss_pred CCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceE
Confidence 789999999998754 66665557778888855 578899999999999999998742 2233455667788
Q ss_pred ccCCCCCCC---CcccCCCcccHHHhcccC
Q psy15549 459 KENDPTKGE---PVRSEDKPRSAEQAKGEG 485 (621)
Q Consensus 459 ~~~~~~~~~---~~~s~~~~~~~~~w~~~~ 485 (621)
.+.|++++. .+...+.++.+.+|+++.
T Consensus 390 ~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 390 QFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 889999998 677778888888888754
No 45
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.5e-39 Score=323.37 Aligned_cols=327 Identities=18% Similarity=0.204 Sum_probs=254.4
Q ss_pred ceeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEE
Q psy15549 6 PEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVN 85 (621)
Q Consensus 6 ~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 85 (621)
|++...|.++|++++|+|+++ +|++|+.|+.|+ +|++..++ ++....+.+|...|.
T Consensus 1 ~~~~~~~~~~i~~~~~s~~~~-----~l~~~~~d~~v~--------------i~~~~~~~-----~~~~~~~~~h~~~v~ 56 (372)
T 1k8k_C 1 MAYHSFLVEPISCHAWNKDRT-----QIAICPNNHEVH--------------IYEKSGNK-----WVQVHELKEHNGQVT 56 (372)
T ss_dssp -CEEESCSSCCCEEEECTTSS-----EEEEECSSSEEE--------------EEEEETTE-----EEEEEEEECCSSCEE
T ss_pred CceecccCCCeEEEEECCCCC-----EEEEEeCCCEEE--------------EEeCCCCc-----EEeeeeecCCCCccc
Confidence 356667999999999999998 999999999999 99987664 123445789999999
Q ss_pred EEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q psy15549 86 VVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDL 164 (621)
Q Consensus 86 ~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~ 164 (621)
+++|+|++++|++++ |+.|++|++..+. ......+..|...|.+++|+|++++|++++.|+.|++||+......
T Consensus 57 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~ 131 (372)
T 1k8k_C 57 GVDWAPDSNRIVTCGTDRNAYVWTLKGRT-----WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 131 (372)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEETTE-----EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEcCCCeEEEEECCCCe-----eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Confidence 999999999999988 8889999997762 1233445678999999999999999999999999999999887631
Q ss_pred CCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC------------------CCCcE
Q psy15549 165 PEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDV------------------HKGKN 226 (621)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~------------------~~~~~ 226 (621)
. .......+|...|.+++|+|++++|++++.||.|++||+ ..++.
T Consensus 132 ~-----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 194 (372)
T 1k8k_C 132 W-----------------VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194 (372)
T ss_dssp E-----------------EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred e-----------------eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhh
Confidence 1 112334678999999999999999999999999999995 46788
Q ss_pred EEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeee
Q psy15549 227 LGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLT 306 (621)
Q Consensus 227 ~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 306 (621)
+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+..+ ...|.+++
T Consensus 195 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----------------------~~~v~~~~ 251 (372)
T 1k8k_C 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-----------------------TLPLLAVT 251 (372)
T ss_dssp EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-----------------------SCCEEEEE
T ss_pred eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC-----------------------CCCeEEEE
Confidence 8899899999999999999999999999999999999998887776432 34578999
Q ss_pred ecCCCCeEEeccccccCCCCCCcceeeee--ee-e-ecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCc
Q psy15549 307 FSPDGQLLIAPSGCLENSDSTRKPISVTH--VF-T-RACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYR 382 (621)
Q Consensus 307 ~spdg~~l~~~s~~~~~~d~~i~~~~~~~--~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (621)
|+|++.+++++ .|+.+++|++.. .. . ..... .+
T Consensus 252 ~~~~~~~l~~~------~d~~i~i~~~~~~~~~~~~~~~~~-------~~------------------------------ 288 (372)
T 1k8k_C 252 FITESSLVAAG------HDCFPVLFTYDSAAGKLSFGGRLD-------VP------------------------------ 288 (372)
T ss_dssp EEETTEEEEEE------TTSSCEEEEEETTTTEEEECCCCC-------CC------------------------------
T ss_pred EecCCCEEEEE------eCCeEEEEEccCcCceEEEeeccC-------cc------------------------------
Confidence 99999988765 488999999863 10 0 00000 00
Q ss_pred EEEEEEcCCcEEEE---eCCCCcee------EEEecccccceEEEEEc-CCC---CeEEEEeCCCcEEEEEecCCc
Q psy15549 383 IVIAVATENNILLY---DTQHASPF------AFIANIHYTKLTDITWS-SDG---KVLIASSTDGYCSIISFGDNE 445 (621)
Q Consensus 383 ~l~~~~~dg~i~iw---d~~~~~~~------~~~~~~h~~~v~~~~~s-pdg---~~l~s~s~dg~i~iw~~~~~~ 445 (621)
..........+.+| +.. +... ..+..+|...|++++|+ ++| .+|++|+.||.|++|++.+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 289 KQSSQRGLTARERFQNLDKK-ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp --------CHHHHHHHCCCC-C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccchhhhcchhhhhhhcccc-cccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 00011122334445 322 2221 23334799999999966 677 999999999999999998754
No 46
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.6e-39 Score=325.05 Aligned_cols=321 Identities=12% Similarity=0.112 Sum_probs=248.6
Q ss_pred ccceeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCc
Q psy15549 4 TIPEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKA 83 (621)
Q Consensus 4 ~~~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~ 83 (621)
.....+.+|.++|++|+|+| . +|++|+.||.|+ +|++..+.... .......+.+|...
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~-----~l~s~~~dg~i~--------------iw~~~~~~~~~-~~~~~~~~~~h~~~ 64 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--S-----FTVSCSGDGYLK--------------VWDNKLLDNEN-PKDKSYSHFVHKSG 64 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--S-----EEEEEETTSEEE--------------EEESBCCTTCC-GGGGEEEEECCTTC
T ss_pred hhhhhhhhhhcCeEEEEecC--C-----eEEEEcCCCEEE--------------EEECCCccccc-CCCcceEEecCCCc
Confidence 44556678999999999999 5 999999999999 88887765211 12234457799999
Q ss_pred EEEEEEccC----C---CEEEEEc-CCceEEEEeccCccccccceeccccccc-----CCCeEEEEEC----CCCCE-EE
Q psy15549 84 VNVVRFSPN----G---ELLASGD-DVGKEIWYLTERESGIANVEFASDLSRH-----QKAVNVVRFS----PNGEL-LA 145 (621)
Q Consensus 84 V~~l~~spd----g---~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h-----~~~V~~i~~s----p~g~~-l~ 145 (621)
|.+++|+|+ + ++|++++ |+.|++|++..+..... .....+..| ...|.+++|+ |++++ |+
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 142 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK--VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLV 142 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC--EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc--ccceeecccccccCCCcEEEEEEeeccCCCCceEEE
Confidence 999999999 9 9999988 88999999987632100 115556677 5899999999 99999 99
Q ss_pred EEeCCCcEEEEEccC------CCCCCCCCCCCcccccccccceeeeeee-------cCCCCCeEEEEECCCCCEEEEEeC
Q psy15549 146 SGDDESTIIVWKQKT------DQDLPEFPSSNLDEENVNKEHWIVTKIL-------RGHLEDVYDISWSPTSTHLISGSV 212 (621)
Q Consensus 146 s~s~dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~i~~spd~~~l~s~~~ 212 (621)
+++.||.|++||+.+ ...+... ....+ ..|...|.+++|+|++ +|++++.
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~ 205 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWS----------------PTLELQGTVESPMTPSQFATSVDISERG-LIATGFN 205 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCC----------------CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT
T ss_pred EEeCCCcEEEEeCCccccccccceeecc----------------CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC
Confidence 999999999999998 5543200 01133 4588999999999999 9999999
Q ss_pred CCeEEEEECCCCcEEEEecc---C---CcceEEEEEcCCCCEEEEEeCC---CcEEEEEccCceeeeecccCCCCCCCcc
Q psy15549 213 DNTAIMWDVHKGKNLGILTE---H---KKFVQGVAWDPKNQYVATLSSD---RSLRTYSIQSKKVISRACRSKLPVDSSH 283 (621)
Q Consensus 213 dg~i~vwd~~~~~~~~~~~~---~---~~~v~~l~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (621)
||.|++||+++++.+..+.. | ...|.+++|+|++++|++++.| |.|++||+++++.+..+.....+..
T Consensus 206 dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~--- 282 (397)
T 1sq9_A 206 NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ--- 282 (397)
T ss_dssp TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccc---
Confidence 99999999999999999988 8 9999999999999999999999 9999999999887776643110000
Q ss_pred ccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccc
Q psy15549 284 ELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCP 363 (621)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (621)
.......+...|.+++|+|++++|+++
T Consensus 283 -------~~~~~~~~~~~v~~~~~~~~~~~l~~~---------------------------------------------- 309 (397)
T 1sq9_A 283 -------ASLGEFAHSSWVMSLSFNDSGETLCSA---------------------------------------------- 309 (397)
T ss_dssp ----------CCBSBSSCEEEEEECSSSSEEEEE----------------------------------------------
T ss_pred -------ccccccccCCcEEEEEECCCCCEEEEE----------------------------------------------
Confidence 000011134566777777777666554
Q ss_pred eeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEec-----cc---------------ccceEEEEEcCC
Q psy15549 364 VLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN-----IH---------------YTKLTDITWSSD 423 (621)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~h---------------~~~v~~~~~spd 423 (621)
+.|+.|++||+.+++.+..+.. +| ...|++++|+|+
T Consensus 310 ------------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 365 (397)
T 1sq9_A 310 ------------------------GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK 365 (397)
T ss_dssp ------------------------ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred ------------------------eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence 4788899999988888887751 46 899999999999
Q ss_pred C----------CeEEEEeCCCcEEEEEecCCc
Q psy15549 424 G----------KVLIASSTDGYCSIISFGDNE 445 (621)
Q Consensus 424 g----------~~l~s~s~dg~i~iw~~~~~~ 445 (621)
| ++|++++.||.|++|++.+|+
T Consensus 366 g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 366 GWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 9 799999999999999998763
No 47
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.1e-38 Score=314.93 Aligned_cols=294 Identities=17% Similarity=0.229 Sum_probs=236.9
Q ss_pred eeccccccccCcEEEEEE-----cc-CCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEE
Q psy15549 72 EFASDLSRHQKAVNVVRF-----SP-NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELL 144 (621)
Q Consensus 72 ~~~~~~~~h~~~V~~l~~-----sp-dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l 144 (621)
.....+.+|.+.|++++| ++ ++++|++|+ |+.|++|++...............+.+|...|.+++|+|++.+|
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 345568999999999999 77 999999998 88999999976532211124456788999999999999999999
Q ss_pred EEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q psy15549 145 ASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKG 224 (621)
Q Consensus 145 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~ 224 (621)
++|+.|++|++||+.+++.+ ..+.+|...|.+++|+|++++|++++.|+.|++||+..
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~---------------------~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~- 149 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTY---------------------KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG- 149 (343)
T ss_dssp EEEETTSEEEEEETTSSCEE---------------------EEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-
T ss_pred EEEcCCCcEEEEECCCCcEE---------------------EEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-
Confidence 99999999999999988743 66789999999999999999999999999999999974
Q ss_pred cEEEEec---cCCcceEEEEEcCCC----------CEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCcccccccccc
Q psy15549 225 KNLGILT---EHKKFVQGVAWDPKN----------QYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVP 291 (621)
Q Consensus 225 ~~~~~~~---~~~~~v~~l~~sp~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (621)
....... .|...|.+++|+|++ .+|++++.||.|++||. ..+....+.
T Consensus 150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~------------------ 210 (343)
T 2xzm_R 150 ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK------------------ 210 (343)
T ss_dssp CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE------------------
T ss_pred CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc------------------
Confidence 3333333 688899999999987 78999999999999994 344443332
Q ss_pred ccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCC
Q psy15549 292 LFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPS 371 (621)
Q Consensus 292 ~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (621)
.+...|.+++|+|+|++|++++
T Consensus 211 -----~h~~~v~~~~~s~~g~~l~sgs----------------------------------------------------- 232 (343)
T 2xzm_R 211 -----AHESNVNHLSISPNGKYIATGG----------------------------------------------------- 232 (343)
T ss_dssp -----CCSSCEEEEEECTTSSEEEEEE-----------------------------------------------------
T ss_pred -----CccccceEEEECCCCCEEEEEc-----------------------------------------------------
Confidence 3345678899999888877655
Q ss_pred CCCCCccCCCcEEEEEEcCCcEEEEeCCC-CceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCc--
Q psy15549 372 DDKPLFKLPYRIVIAVATENNILLYDTQH-ASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGI-- 448 (621)
Q Consensus 372 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~-- 448 (621)
.|+.|++||+.. ......+. +...|.+++|+|++++|+++ .|+.|++|++.+++...
T Consensus 233 -----------------~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~ 292 (343)
T 2xzm_R 233 -----------------KDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVC 292 (343)
T ss_dssp -----------------TTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEE
T ss_pred -----------------CCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceE
Confidence 678888888844 33444442 45579999999999877655 68889999998876544
Q ss_pred ccC-----------CCCCcccccCCCCCCCCcccCCCcccHHHhccc
Q psy15549 449 PYV-----------PPSGEESKENDPTKGEPVRSEDKPRSAEQAKGE 484 (621)
Q Consensus 449 ~~~-----------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~~~ 484 (621)
.+. .+...+..+.|+|+|..+++++.|+.+++|+.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 293 TIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp ECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred EeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 332 455667888999999999999999999999865
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.9e-39 Score=326.36 Aligned_cols=303 Identities=21% Similarity=0.289 Sum_probs=240.7
Q ss_pred cccCcEEEEEEccCCCEEEEEcCCceEEEEeccCccccccceeccccccc------------------CCCeEEEEECCC
Q psy15549 79 RHQKAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRH------------------QKAVNVVRFSPN 140 (621)
Q Consensus 79 ~h~~~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h------------------~~~V~~i~~sp~ 140 (621)
+|.+.|.+++|+|||++||+|+++.+++|++..+. ....+..| ...|.+++|+|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGS-------LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCC-------EEEEECC-----------------CCCCBEEEEEECTT
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCC-------EEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 69999999999999999999999999999998762 23333322 235999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q psy15549 141 GELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWD 220 (621)
Q Consensus 141 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd 220 (621)
|++|++|+.|+.|++||+.+++. ...+.+|...|++++|+|++++|++++.|+.|++||
T Consensus 135 g~~l~s~~~d~~i~iwd~~~~~~---------------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd 193 (393)
T 1erj_A 135 GKFLATGAEDRLIRIWDIENRKI---------------------VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193 (393)
T ss_dssp SSEEEEEETTSCEEEEETTTTEE---------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcE---------------------EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence 99999999999999999988764 366789999999999999999999999999999999
Q ss_pred CCCCcEEEEeccCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcc
Q psy15549 221 VHKGKNLGILTEHKKFVQGVAWDP-KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMK 299 (621)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (621)
++++++...+. +...+.+++|+| ++++|++++.|+.|++||++++..+..+..... ....+.
T Consensus 194 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~----------------~~~~h~ 256 (393)
T 1erj_A 194 LRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE----------------SGTGHK 256 (393)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----------------------CCCS
T ss_pred CCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc----------------CCCCCC
Confidence 99999887775 567799999999 899999999999999999999887765532110 112456
Q ss_pred cceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccC
Q psy15549 300 SFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKL 379 (621)
Q Consensus 300 ~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (621)
..|.+++|+|+|++|++++ .|+.+++|++.........
T Consensus 257 ~~v~~v~~~~~g~~l~s~s-----~d~~v~~wd~~~~~~~~~~------------------------------------- 294 (393)
T 1erj_A 257 DSVYSVVFTRDGQSVVSGS-----LDRSVKLWNLQNANNKSDS------------------------------------- 294 (393)
T ss_dssp SCEEEEEECTTSSEEEEEE-----TTSEEEEEEC----------------------------------------------
T ss_pred CCEEEEEECCCCCEEEEEe-----CCCEEEEEECCCCCCcccc-------------------------------------
Confidence 6789999999998888877 6666666665421100000
Q ss_pred CCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccc
Q psy15549 380 PYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESK 459 (621)
Q Consensus 380 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 459 (621)
-....+.....+ .+|...|.+++|+|++++|++|+.||.|++||+.+++....+.+|...+..
T Consensus 295 ----------------~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~ 357 (393)
T 1erj_A 295 ----------------KTPNSGTCEVTY-IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 357 (393)
T ss_dssp ----------------------CEEEEE-ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ----------------cCCCCCcceEEE-ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEE
Confidence 000011223333 469999999999999999999999999999999999998899999888877
Q ss_pred cCCC------CCCCCcccCCCcccHHHhcccC
Q psy15549 460 ENDP------TKGEPVRSEDKPRSAEQAKGEG 485 (621)
Q Consensus 460 ~~~~------~~~~~~~s~~~~~~~~~w~~~~ 485 (621)
+.++ |++..+++++.|+.+++|+...
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 7655 4678899999999999998754
No 49
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-39 Score=315.64 Aligned_cols=306 Identities=19% Similarity=0.260 Sum_probs=222.8
Q ss_pred eccccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccc-cc-cCCCeEEEEECCCCCEEEEEeC
Q psy15549 73 FASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDL-SR-HQKAVNVVRFSPNGELLASGDD 149 (621)
Q Consensus 73 ~~~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~-~~-h~~~V~~i~~sp~g~~l~s~s~ 149 (621)
+...+.+|.+.|.+++|+|+ +||+|+ |+.|++|++..+.. .....+ .+ |...|.+++|+|++++|++|+.
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-----~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 78 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-----TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-----EEEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-----EEEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence 45568899999999999998 888887 89999999976421 233333 34 9999999999999999999999
Q ss_pred CCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC----Cc
Q psy15549 150 ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHK----GK 225 (621)
Q Consensus 150 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~----~~ 225 (621)
|++|+|||+....... ..+.....+.+|...|.+++|+|++++|++|+.|+.|++||+.. .+
T Consensus 79 D~~v~iw~~~~~~~~~--------------~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~ 144 (330)
T 2hes_X 79 DSTVSIWAKEESADRT--------------FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYE 144 (330)
T ss_dssp TSCEEEEEC---------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCE
T ss_pred CCcEEEEEcccCcCcc--------------ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeE
Confidence 9999999986432100 01123466789999999999999999999999999999999943 25
Q ss_pred EEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCc--eeeeecccCCCCCCCccccccccccccccCCccccee
Q psy15549 226 NLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSK--KVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFR 303 (621)
Q Consensus 226 ~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 303 (621)
++..+.+|...|.+++|+|++.+|++++.|++|++||+.++ +.+..+. .+...|.
T Consensus 145 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-----------------------~h~~~v~ 201 (330)
T 2hes_X 145 CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-----------------------GHEGTVW 201 (330)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-----------------------CCSSCEE
T ss_pred EEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-----------------------CCCCcEE
Confidence 67788899999999999999999999999999999998765 3444443 3455678
Q ss_pred eeeecCC--CCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCC
Q psy15549 304 RLTFSPD--GQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPY 381 (621)
Q Consensus 304 ~~~~spd--g~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (621)
+++|+|+ +.+|++++ .|+++++|++.....
T Consensus 202 ~~~~~~~~~~~~l~s~s-----~D~~v~iw~~~~~~~------------------------------------------- 233 (330)
T 2hes_X 202 SSDFDKTEGVFRLCSGS-----DDSTVRVWKYMGDDE------------------------------------------- 233 (330)
T ss_dssp EEEECCSSSSCEEEEEE-----TTSCEEEEEEEEECT-------------------------------------------
T ss_pred EEEecCCCCeeEEEEEe-----CCCeEEEEEecCCCc-------------------------------------------
Confidence 8899988 55666655 455555555432100
Q ss_pred cEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCc--CC-cccCCCCC-cc
Q psy15549 382 RIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNE--IG-IPYVPPSG-EE 457 (621)
Q Consensus 382 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~--~~-~~~~~~~~-~~ 457 (621)
.+ ...| .....+...|...|.+++|++++ +|++++.||.|++|+..+++ .. ..+..|.. .+
T Consensus 234 --------~~-~~~~-----~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v 298 (330)
T 2hes_X 234 --------DD-QQEW-----VCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEI 298 (330)
T ss_dssp --------TS-CEEE-----EEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCE
T ss_pred --------cc-ccee-----EEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceE
Confidence 00 0000 12223323488999999999765 89999999999999998773 22 23345655 67
Q ss_pred cccCCCC--CCCCcccCCCcccHHHhcccC
Q psy15549 458 SKENDPT--KGEPVRSEDKPRSAEQAKGEG 485 (621)
Q Consensus 458 ~~~~~~~--~~~~~~s~~~~~~~~~w~~~~ 485 (621)
..+.+++ ++..+++++.|+.+++|+++.
T Consensus 299 ~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 299 NVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 7888888 688999999999999998753
No 50
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.4e-38 Score=320.03 Aligned_cols=306 Identities=14% Similarity=0.171 Sum_probs=245.2
Q ss_pred eeeecCCCCeEEEeccccc-cCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEE
Q psy15549 7 EISWHNRDPVLSVDIQLKQ-EKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVN 85 (621)
Q Consensus 7 ~~~~~h~~~v~~l~~spd~-~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 85 (621)
.....|.+.|++++|+|++ + +|++|+.||.|+ ||++.++..... ..+.+|...|.
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~-----~l~s~~~dg~i~--------------iwd~~~~~~~~~-----~~~~~h~~~v~ 122 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPT-----TVAVGSKGGDII--------------LWDYDVQNKTSF-----IQGMGPGDAIT 122 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTT-----EEEEEEBTSCEE--------------EEETTSTTCEEE-----ECCCSTTCBEE
T ss_pred EeccCCCCCEEEEEECCCCCC-----EEEEEcCCCeEE--------------EEeCCCccccee-----eecCCcCCcee
Confidence 3456789999999999999 7 999999999999 888876654322 22357999999
Q ss_pred EEEEcc-CCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCC
Q psy15549 86 VVRFSP-NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQD 163 (621)
Q Consensus 86 ~l~~sp-dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~ 163 (621)
+++|+| ++++|++++ |+.|++|++... ..........|...|.+++|+|++++|++|+.|+.|++||+. ++.
T Consensus 123 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 196 (383)
T 3ei3_B 123 GMKFNQFNTNQLFVSSIRGATTLRDFSGS-----VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHE 196 (383)
T ss_dssp EEEEETTEEEEEEEEETTTEEEEEETTSC-----EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCE
T ss_pred EEEeCCCCCCEEEEEeCCCEEEEEECCCC-----ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCE
Confidence 999999 788999888 888999999853 123333334566889999999999999999999999999984 332
Q ss_pred CCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCC----CcEEEEeccCCcceE
Q psy15549 164 LPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTST-HLISGSVDNTAIMWDVHK----GKNLGILTEHKKFVQ 238 (621)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~-~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~ 238 (621)
...+.+|...|.+++|+|+++ +|++++.|+.|++||+++ +..+..+ .|...|.
T Consensus 197 ---------------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~ 254 (383)
T 3ei3_B 197 ---------------------IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVN 254 (383)
T ss_dssp ---------------------EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEE
T ss_pred ---------------------EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceE
Confidence 366778999999999999998 999999999999999998 6666666 6999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEec
Q psy15549 239 GVAWDP-KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAP 317 (621)
Q Consensus 239 ~l~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 317 (621)
+++|+| ++++|++++.|+.|++||+++++....+..+.... ..+...+. +.|+|++..++++
T Consensus 255 ~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------------~~~~~~~~-~~~~p~~~~~~~~ 317 (383)
T 3ei3_B 255 AAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ----------------FQHLTPIK-ATWHPMYDLIVAG 317 (383)
T ss_dssp EEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCC----------------CTTSCCCC-CEECSSSSEEEEE
T ss_pred EEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccc----------------cccccceE-EeccCCCCceEEE
Confidence 999999 99999999999999999999887766654332211 11122233 5788888777654
Q ss_pred cccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEe
Q psy15549 318 SGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYD 397 (621)
Q Consensus 318 s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 397 (621)
.. +++.+ +++.|+.|++||
T Consensus 318 ~s-----------------------------------------------------------~dg~~--s~s~d~~i~iwd 336 (383)
T 3ei3_B 318 RY-----------------------------------------------------------PDDQL--LLNDKRTIDIYD 336 (383)
T ss_dssp CB-----------------------------------------------------------CCTTT--CTTCCCCEEEEE
T ss_pred ec-----------------------------------------------------------CCccc--ccCCCCeEEEEe
Confidence 31 12233 566899999999
Q ss_pred CCCCceeEEEecc-cccceEEEEEcCCCCeEEEEeCCCcEEEEEecC
Q psy15549 398 TQHASPFAFIANI-HYTKLTDITWSSDGKVLIASSTDGYCSIISFGD 443 (621)
Q Consensus 398 ~~~~~~~~~~~~~-h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~ 443 (621)
+.+++.+..+... |...+..++|+|+|++|++++ ||.|++|++++
T Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 337 ANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 9999998888542 456788889999999999997 99999999874
No 51
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-39 Score=334.01 Aligned_cols=347 Identities=10% Similarity=0.033 Sum_probs=243.9
Q ss_pred eeeecCCCCeEEEeccccccCC----cceEEEEec-------------------CCceEEeeeccCccccccceeEEecc
Q psy15549 7 EISWHNRDPVLSVDIQLKQEKD----NCYRIVTGG-------------------ADSHVFDYLLKIPHRLKTGKIWYLTE 63 (621)
Q Consensus 7 ~~~~~h~~~v~~l~~spd~~~~----~~~~l~tg~-------------------~dg~v~~~d~~~~~~~~~~~iw~~~~ 63 (621)
...+.+.+.|++|+|+|++... ...+||+|+ .|+.|+ ||++..
T Consensus 127 ~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~--------------iWd~~~ 192 (524)
T 2j04_B 127 GFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQ--------------IFKMNT 192 (524)
T ss_dssp EEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEE--------------EEEEET
T ss_pred eEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEE--------------EEEccC
Confidence 3456678899999999997100 012776644 566676 999877
Q ss_pred ccccccceeeccccccccCcEEEEEEccC------CCEEEEEc-CCceEEEEeccCcccc----ccceecccccccCCCe
Q psy15549 64 RESGIANVEFASDLSRHQKAVNVVRFSPN------GELLASGD-DVGKEIWYLTERESGI----ANVEFASDLSRHQKAV 132 (621)
Q Consensus 64 ~~~~~~~~~~~~~~~~h~~~V~~l~~spd------g~~las~~-d~~v~iw~~~~~~~~~----~~~~~~~~~~~h~~~V 132 (621)
++... .....+.+|.+.|.+++|+|+ +.+||+++ |+.|+||++..+.... ........+.+|...|
T Consensus 193 ~~~~~---~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v 269 (524)
T 2j04_B 193 STLHC---VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLI 269 (524)
T ss_dssp TTCCE---EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCE
T ss_pred CCCCc---eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCE
Confidence 65321 122345678899999999997 57999888 8899999997653210 0001234577899999
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEE--EECCCC-CEEEE
Q psy15549 133 NVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDI--SWSPTS-THLIS 209 (621)
Q Consensus 133 ~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~spd~-~~l~s 209 (621)
++++|++++ .|++|+.||+|++||+.++... ...+.+|...|+++ .|+|++ .+|++
T Consensus 270 ~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~--------------------~~~~~~H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 270 TTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVP--------------------SFYDQVHDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp EEEEESSSS-EEEEEETTSEEEEEETTBCSSC--------------------SEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred EEEEecCCC-eEEEEeCCCEEEEEECCCCCCc--------------------eEEeecccccEEEEEEEcCCCCCeEEEE
Confidence 999999864 8999999999999999876432 14567899999999 578888 89999
Q ss_pred EeCCCeEEEEECCCCcEEEEeccCCc--ceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCcccccc
Q psy15549 210 GSVDNTAIMWDVHKGKNLGILTEHKK--FVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFD 287 (621)
Q Consensus 210 ~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (621)
|+.|++|+|||+++++++..+.+|.. .|.+++|+|+++.|++++.|++|++||++++..+..+.
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-------------- 394 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-------------- 394 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE--------------
T ss_pred eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee--------------
Confidence 99999999999998887766666653 58899999999999999999999999999887665554
Q ss_pred ccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceec-CCcccceeeeeccceee
Q psy15549 288 KVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL-PSLQYYSVAVKCCPVLF 366 (621)
Q Consensus 288 ~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 366 (621)
.|...|.+++|+|+|++|++++ .|+++++|+.... ......... ......+..+.|+|
T Consensus 395 ---------gH~~~V~sva~Sp~g~~l~Sgs-----~Dgtv~lwd~~~~----~~~~~~~~~~~~~~~~v~~v~~sp--- 453 (524)
T 2j04_B 395 ---------SRETTITAIGVSRLHPMVLAGS-----ADGSLIITNAARR----LLHGIKNSSATQKSLRLWKWDYSI--- 453 (524)
T ss_dssp ---------ECSSCEEEEECCSSCCBCEEEE-----TTTEEECCBSCSS----TTTCC------CCCCEEEECBCCS---
T ss_pred ---------cCCCceEEEEeCCCCCeEEEEE-----CCCEEEEEechHh----hccccccCccceeeeEEEEeccCC---
Confidence 3455679999999999999999 8999999996421 110000000 00111344566665
Q ss_pred ecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCC-CCceeEEEecccccceEEEEEcCCCC---eEEEEeCCCcEEEEEec
Q psy15549 367 ELKPSDDKPLFKLPYRIVIAVATENNILLYDTQ-HASPFAFIANIHYTKLTDITWSSDGK---VLIASSTDGYCSIISFG 442 (621)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~h~~~v~~~~~spdg~---~l~s~s~dg~i~iw~~~ 442 (621)
+++.+ ... +.+.+|+.. ++..+..+ .+|...|.+++|+|++. +||+|+.||.|+||++.
T Consensus 454 -------------~g~~~-~~~--~~~~~~~~~~~g~~~~~l-~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 454 -------------KDDKY-RID--SSYEVYPLTVNDVSKAKI-DAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp -------------SSCEE-EEC--CCCCCCC--------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred -------------CCCeE-Ecc--CCceecccccCCcceeee-cCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 33422 221 223333332 34555555 46999999999999964 99999999999999987
Q ss_pred C
Q psy15549 443 D 443 (621)
Q Consensus 443 ~ 443 (621)
-
T Consensus 517 ~ 517 (524)
T 2j04_B 517 L 517 (524)
T ss_dssp C
T ss_pred c
Confidence 3
No 52
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-39 Score=325.11 Aligned_cols=254 Identities=17% Similarity=0.212 Sum_probs=202.6
Q ss_pred cceeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcE
Q psy15549 5 IPEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAV 84 (621)
Q Consensus 5 ~~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V 84 (621)
.+++...|.++|++++|+|+++ +||+|+.|+.|+ ||++.++. ......+.+|...|
T Consensus 3 ~~~~~~~~~~~v~~~~~s~~g~-----~l~~~~~d~~i~--------------iw~~~~~~-----~~~~~~~~~h~~~v 58 (377)
T 3dwl_C 3 TSQVLHILPKPSYEHAFNSQRT-----EFVTTTATNQVE--------------LYEQDGNG-----WKHARTFSDHDKIV 58 (377)
T ss_dssp CEEEEEECSSCCSCCEECSSSS-----EEECCCSSSCBC--------------EEEEETTE-----EEECCCBCCCSSCE
T ss_pred cceeEecCCCcEEEEEECCCCC-----EEEEecCCCEEE--------------EEEccCCc-----eEEEEEEecCCceE
Confidence 4666777888999999999998 999999999999 99988652 12344588999999
Q ss_pred EEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCC
Q psy15549 85 NVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQD 163 (621)
Q Consensus 85 ~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~ 163 (621)
.+++|+|++++|++++ |+.|++|++..+. .+.....+.+|...|.+++|+|++++|++++.|+.|++||+.++..
T Consensus 59 ~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 59 TCVDWAPKSNRIVTCSQDRNAYVYEKRPDG----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND 134 (377)
T ss_dssp EEEEECTTTCCEEEEETTSSEEEC----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEEcCCCC----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc
Confidence 9999999999999988 8899999998763 1134556778999999999999999999999999999999988764
Q ss_pred CCCCCCCCcccccccccceeeeeeecC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEECC------------------CC
Q psy15549 164 LPEFPSSNLDEENVNKEHWIVTKILRG-HLEDVYDISWSPTSTHLISGSVDNTAIMWDVH------------------KG 224 (621)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~------------------~~ 224 (621)
... ...+.. |...|++++|+|++++|++++.|+.|++||+. .+
T Consensus 135 ~~~------------------~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 196 (377)
T 3dwl_C 135 WWV------------------SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFN 196 (377)
T ss_dssp CCC------------------CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEE
T ss_pred cee------------------eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchh
Confidence 211 245556 99999999999999999999999999999985 35
Q ss_pred cEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCcee----eeecccCCCCCCCccccccccccccccCCccc
Q psy15549 225 KNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKV----ISRACRSKLPVDSSHELFDKVVPLFHDDTMKS 300 (621)
Q Consensus 225 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (621)
+++..+ .|...|.+++|+|++++|++++.||.|++||+.+++. +..+. .+..
T Consensus 197 ~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------------~~~~ 252 (377)
T 3dwl_C 197 TVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK-----------------------LSQL 252 (377)
T ss_dssp EEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE-----------------------CSSS
T ss_pred hhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec-----------------------CCCC
Confidence 566667 8999999999999999999999999999999998765 33332 3455
Q ss_pred ceeeeeecCCCCeEEeccccccCCCCCCcceeee
Q psy15549 301 FFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVT 334 (621)
Q Consensus 301 ~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~ 334 (621)
.|.+++|+|++++|++++ .++.+ +|+..
T Consensus 253 ~v~~~~~s~~~~~l~~~~-----~~~~~-~~~~~ 280 (377)
T 3dwl_C 253 PLRSLLWANESAIVAAGY-----NYSPI-LLQGN 280 (377)
T ss_dssp CEEEEEEEETTEEEEEES-----SSSEE-EECCC
T ss_pred ceEEEEEcCCCCEEEEEc-----CCcEE-EEEeC
Confidence 679999999999998876 44444 66543
No 53
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.6e-38 Score=349.73 Aligned_cols=382 Identities=16% Similarity=0.204 Sum_probs=293.9
Q ss_pred eeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEE
Q psy15549 8 ISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVV 87 (621)
Q Consensus 8 ~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l 87 (621)
....|.++|++++|+|+++ +|++|+.||.|+ +|++.++.... .+.+|.+.|.++
T Consensus 50 ~~~~~~~~v~~~~~s~~~~-----~l~~~~~dg~i~--------------vw~~~~~~~~~-------~~~~~~~~v~~~ 103 (814)
T 3mkq_A 50 SIQVTETPVRAGKFIARKN-----WIIVGSDDFRIR--------------VFNYNTGEKVV-------DFEAHPDYIRSI 103 (814)
T ss_dssp EEECCSSCEEEEEEEGGGT-----EEEEEETTSEEE--------------EEETTTCCEEE-------EEECCSSCEEEE
T ss_pred EEecCCCcEEEEEEeCCCC-----EEEEEeCCCeEE--------------EEECCCCcEEE-------EEecCCCCEEEE
Confidence 4456889999999999998 999999999999 99988765433 478899999999
Q ss_pred EEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCC
Q psy15549 88 RFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP-NGELLASGDDESTIIVWKQKTDQDLP 165 (621)
Q Consensus 88 ~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp-~g~~l~s~s~dg~i~vwd~~~~~~~~ 165 (621)
+|+|++++|++++ |+.|++|++..+. .....+.+|...|.+++|+| ++.+|++++.||.|++||+.++....
T Consensus 104 ~~s~~~~~l~~~~~dg~i~vw~~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~ 177 (814)
T 3mkq_A 104 AVHPTKPYVLSGSDDLTVKLWNWENNW------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177 (814)
T ss_dssp EECSSSSEEEEEETTSEEEEEEGGGTS------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE
T ss_pred EEeCCCCEEEEEcCCCEEEEEECCCCc------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence 9999999999988 7889999998753 45567788999999999999 88999999999999999998776531
Q ss_pred CCCCCCcccccccccceeeeeeecCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEc
Q psy15549 166 EFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP--TSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWD 243 (621)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp--d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s 243 (621)
.....+...+.+++|+| ++.+|++++.||.|++||+.+++.+..+..|...|.+++|+
T Consensus 178 --------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~ 237 (814)
T 3mkq_A 178 --------------------TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237 (814)
T ss_dssp --------------------EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred --------------------EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 22334558899999999 99999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCe--EEeccccc
Q psy15549 244 PKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQL--LIAPSGCL 321 (621)
Q Consensus 244 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~--l~~~s~~~ 321 (621)
|++++|++++.||.|++||+.+++.+..+..+ ...+.+++|+|++.. ++++
T Consensus 238 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-----------------------~~~v~~~~~~~~~~~~~~~~~---- 290 (814)
T 3mkq_A 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-----------------------LERSWCIATHPTGRKNYIASG---- 290 (814)
T ss_dssp SSSSEEEEEETTSCEEEEETTTCSEEEEECCS-----------------------SSSEEEEEECTTCGGGEEEEE----
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEeecC-----------------------CCcEEEEEEccCCCceEEEEE----
Confidence 99999999999999999999998877766432 335678888888863 4433
Q ss_pred cCCCCCCcceeeeeeeeecccC------------------------------------CCceecCCcccceeeeecccee
Q psy15549 322 ENSDSTRKPISVTHVFTRACLN------------------------------------KPAVCLPSLQYYSVAVKCCPVL 365 (621)
Q Consensus 322 ~~~d~~i~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 365 (621)
.++.+.+|++.......... .....+..+...+.++
T Consensus 291 --~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 362 (814)
T 3mkq_A 291 --FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSL------ 362 (814)
T ss_dssp --ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEE------
T ss_pred --eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCcee------
Confidence 35555555543211000000 0000011111122222
Q ss_pred eecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCc
Q psy15549 366 FELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNE 445 (621)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~ 445 (621)
.++++++++++++ ++.+.+|++..... .+.+.+.+++|+|||++|++++.+|.|++|+.
T Consensus 363 ----------~~spdg~~la~~~-~~~~~i~~~~~~~~------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~---- 421 (814)
T 3mkq_A 363 ----------AHSPNGRFVTVVG-DGEYVIYTALAWRN------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN---- 421 (814)
T ss_dssp ----------EECTTSSEEEEEE-TTEEEEEETTTTEE------EEEEECSEEEECTTSSCEEEECTTCCEEEEET----
T ss_pred ----------EECCCCCEEEEec-CCEEEEEECccccc------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC----
Confidence 3444677777776 89999999765432 24467889999999999999999999999963
Q ss_pred CCcccCCCCCcccccCCCCCC---CCcccCCCcccHHHhccc-Ccccccccc---CCCCCCCc
Q psy15549 446 IGIPYVPPSGEESKENDPTKG---EPVRSEDKPRSAEQAKGE-GKVLGEKQT---GNKVSPTD 501 (621)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~w~~~-~~~~~~~~~---~~~~s~~~ 501 (621)
+..+...+..+.+++++ ..+++++.++.+++|+++ ++.+..+.. ...++|++
T Consensus 422 ----~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~v~~s~dg 480 (814)
T 3mkq_A 422 ----FKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVIWSDNG 480 (814)
T ss_dssp ----TEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEEEEEECTTS
T ss_pred ----CCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCCEEEEcCCC
Confidence 34455667788899998 688888999999999965 444444332 34455655
No 54
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.1e-38 Score=316.99 Aligned_cols=300 Identities=12% Similarity=0.097 Sum_probs=224.3
Q ss_pred CCCCeEEEeccccccCCcceEEEEecCC-------ceEEeeeccCccccccceeEEecccccccc-cee--ecccccccc
Q psy15549 12 NRDPVLSVDIQLKQEKDNCYRIVTGGAD-------SHVFDYLLKIPHRLKTGKIWYLTERESGIA-NVE--FASDLSRHQ 81 (621)
Q Consensus 12 h~~~v~~l~~spd~~~~~~~~l~tg~~d-------g~v~~~d~~~~~~~~~~~iw~~~~~~~~~~-~~~--~~~~~~~h~ 81 (621)
..-||+|++|+||++ +||+|+.+ +.|+ +|++........ .+. ....+.+|.
T Consensus 13 ~g~PV~sv~fs~dg~-----~l~sGGg~~~~sGi~N~i~--------------~w~~~~~~~~~~~~~~~~~~~~l~~~~ 73 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-----LLVAGGGGEGNNGIPNKLT--------------VLRVDPTKDTEKEQFHILSEFALEDND 73 (365)
T ss_dssp CSSCEEEEEEEETTE-----EEEEEECCSSSSSCCEEEE--------------EEEECTTSSSHHHHEEEEEEEECCTTS
T ss_pred CCCCEEEEEEeCCCc-----EEEEECCCccccCCCCEEE--------------EEEEcCCCcceeeeeeeeeEEEccCCC
Confidence 446999999999998 99998754 3588 888765543211 111 112467888
Q ss_pred CcEEEEEEccCCCEEEEEc------------CCceEEEEeccCccccccceec--ccccccCCCeEEEEECCCCCEEEEE
Q psy15549 82 KAVNVVRFSPNGELLASGD------------DVGKEIWYLTERESGIANVEFA--SDLSRHQKAVNVVRFSPNGELLASG 147 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~------------d~~v~iw~~~~~~~~~~~~~~~--~~~~~h~~~V~~i~~sp~g~~l~s~ 147 (621)
..|.+++++ +..+++|. ++.+++|++............. .....+...+.+++|+|||++|+++
T Consensus 74 ~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~a 151 (365)
T 4h5i_A 74 DSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIA 151 (365)
T ss_dssp CCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEE
T ss_pred CceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEE
Confidence 899888765 55666652 5678999987764322211111 1223455679999999999988754
Q ss_pred --eCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q psy15549 148 --DDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGK 225 (621)
Q Consensus 148 --s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~ 225 (621)
+.|++|+|||+.+++.+ ..+ .|...|++++|+|||++|++++.+ .+++|+..++.
T Consensus 152 s~~~d~~i~iwd~~~~~~~---------------------~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 152 SSKVPAIMRIIDPSDLTEK---------------------FEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp ESCSSCEEEEEETTTTEEE---------------------EEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred ECCCCCEEEEeECCCCcEE---------------------EEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence 47899999999988753 223 477889999999999999999854 57777777777
Q ss_pred EEEE--eccCCcceEEEEEcCCCCEEEEEeCCC----cEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcc
Q psy15549 226 NLGI--LTEHKKFVQGVAWDPKNQYVATLSSDR----SLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMK 299 (621)
Q Consensus 226 ~~~~--~~~~~~~v~~l~~sp~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (621)
.+.. ...|...|.+++|+|+++++++++.|+ .+++|++......... ......+.
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-------------------~~~~~~~~ 269 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-------------------SKQVTNRF 269 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-------------------EEEEESSC
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-------------------eeeecCCC
Confidence 6543 356888999999999999999999887 6888988765432111 01112344
Q ss_pred cceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccC
Q psy15549 300 SFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKL 379 (621)
Q Consensus 300 ~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (621)
..|++++|+|||++||+++
T Consensus 270 ~~V~~~~~Spdg~~lasgs------------------------------------------------------------- 288 (365)
T 4h5i_A 270 KGITSMDVDMKGELAVLAS------------------------------------------------------------- 288 (365)
T ss_dssp SCEEEEEECTTSCEEEEEE-------------------------------------------------------------
T ss_pred CCeEeEEECCCCCceEEEc-------------------------------------------------------------
Confidence 5678889998888777655
Q ss_pred CCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCC
Q psy15549 380 PYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDN 444 (621)
Q Consensus 380 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~ 444 (621)
.|+.|+|||+.+++++..+..+|...|++++|||||++||+||.|++|+||++..+
T Consensus 289 ---------~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 289 ---------NDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ---------TTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ---------CCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 78999999999999999887789999999999999999999999999999999643
No 55
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.1e-38 Score=314.33 Aligned_cols=325 Identities=11% Similarity=0.103 Sum_probs=266.5
Q ss_pred ccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q psy15549 80 HQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQ 158 (621)
Q Consensus 80 h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~ 158 (621)
|.+.|.+++|+|||++++++. ++.+.+|..... .......+|...|++++|+|++++|++++ ||.|++||+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~ 79 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH-------ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDI 79 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE-------EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEET
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCc-------cccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEEC
Confidence 467899999999999999877 555655544332 22333447999999999999999999999 999999999
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCc--EEEEeccCCcc
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGK--NLGILTEHKKF 236 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~ 236 (621)
.++.....+ ......+|...|.+++|+|++++|++++.||.|++||+.+++ ....+..|...
T Consensus 80 ~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 143 (337)
T 1gxr_A 80 SHPGNKSPV----------------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143 (337)
T ss_dssp TSTTCCSCS----------------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC
T ss_pred CCCCceeee----------------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCc
Confidence 887654333 111223789999999999999999999999999999999887 56677889999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEe
Q psy15549 237 VQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIA 316 (621)
Q Consensus 237 v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~ 316 (621)
|.+++|+|++++|++++.||.|++||+++++.+..+.. +...+.+++|+|++++|++
T Consensus 144 i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-----------------------~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-----------------------HTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-----------------------CSSCEEEEEECTTSSEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec-----------------------ccCceEEEEECCCCCEEEE
Confidence 99999999999999999999999999999887776642 3456799999999999999
Q ss_pred ccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEE
Q psy15549 317 PSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLY 396 (621)
Q Consensus 317 ~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 396 (621)
++ .|+.+++|++........ ..+...+.++.|+| ++..+++++.++.|++|
T Consensus 201 ~~-----~dg~i~~~d~~~~~~~~~--------~~~~~~v~~~~~s~----------------~~~~l~~~~~~~~i~~~ 251 (337)
T 1gxr_A 201 GG-----LDNTVRSWDLREGRQLQQ--------HDFTSQIFSLGYCP----------------TGEWLAVGMESSNVEVL 251 (337)
T ss_dssp EE-----TTSEEEEEETTTTEEEEE--------EECSSCEEEEEECT----------------TSSEEEEEETTSCEEEE
T ss_pred Ee-----cCCcEEEEECCCCceEee--------ecCCCceEEEEECC----------------CCCEEEEEcCCCcEEEE
Confidence 98 899999999753221111 12344566667766 77899999999999999
Q ss_pred eCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCCcccCCCcc
Q psy15549 397 DTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEPVRSEDKPR 476 (621)
Q Consensus 397 d~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 476 (621)
|+.+++... + ..|...|.+++|+|++++|++++.||.|++|++.+++..... .+...+..+.+++++..+++++.++
T Consensus 252 ~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 252 HVNKPDKYQ-L-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp ETTSSCEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTS
T ss_pred ECCCCCeEE-E-cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCC
Confidence 999887653 3 458999999999999999999999999999999998876433 4566788889999999999999999
Q ss_pred cHHHhcc
Q psy15549 477 SAEQAKG 483 (621)
Q Consensus 477 ~~~~w~~ 483 (621)
.+++|++
T Consensus 329 ~i~iw~~ 335 (337)
T 1gxr_A 329 KATVYEV 335 (337)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 9999975
No 56
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.1e-37 Score=316.80 Aligned_cols=321 Identities=21% Similarity=0.298 Sum_probs=268.1
Q ss_pred cceeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcE
Q psy15549 5 IPEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAV 84 (621)
Q Consensus 5 ~~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V 84 (621)
......+|.+.|.. ++++++. +|++|+.||.|+ +||+.+++.. ..+.+|.+.|
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~-----~l~sg~~dg~i~--------------vwd~~~~~~~-------~~~~~h~~~v 162 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGN-----RIVSGSDDNTLK--------------VWSAVTGKCL-------RTLVGHTGGV 162 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETT-----EEEEEETTSCEE--------------EEETTTCCEE-------EECCCCSSCE
T ss_pred eeEEecccCCCcEE-EEEEcCC-----EEEEEECCCcEE--------------EEECCCCcEE-------EEEcCCCCCE
Confidence 44566778877533 3555677 999999999999 9998876543 3478999999
Q ss_pred EEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCC
Q psy15549 85 NVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQD 163 (621)
Q Consensus 85 ~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~ 163 (621)
.+++|+ +.+|++|+ |+.|++|++..+ .....+.+|...|.+++|+ +++|++|+.||.|++||+.+++.
T Consensus 163 ~~~~~~--~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~ 231 (445)
T 2ovr_B 163 WSSQMR--DNIIISGSTDRTLKVWNAETG-------ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC 231 (445)
T ss_dssp EEEEEE--TTEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE
T ss_pred EEEEec--CCEEEEEeCCCeEEEEECCcC-------cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE
Confidence 999998 56888887 889999999877 6677888999999999995 56899999999999999998774
Q ss_pred CCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEc
Q psy15549 164 LPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWD 243 (621)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s 243 (621)
+ ..+.+|...|.+++| ++++|++|+.||.|++||+++++.+..+.+|...|.+++|
T Consensus 232 ~---------------------~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~- 287 (445)
T 2ovr_B 232 L---------------------HVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF- 287 (445)
T ss_dssp E---------------------EEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-
T ss_pred E---------------------EEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-
Confidence 3 567789999999999 7889999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccC
Q psy15549 244 PKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLEN 323 (621)
Q Consensus 244 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~ 323 (621)
++.+|++++.||.|++||+++++.+..+..+ ...+.++.+ +++++++++
T Consensus 288 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----------------------~~~v~~~~~--~~~~l~~~~----- 336 (445)
T 2ovr_B 288 -DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-----------------------QSLTSGMEL--KDNILVSGN----- 336 (445)
T ss_dssp -CSSEEEEEETTSCEEEEETTTCCEEEEECCC-----------------------CSCEEEEEE--ETTEEEEEE-----
T ss_pred -CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-----------------------cccEEEEEE--eCCEEEEEe-----
Confidence 7899999999999999999999887776433 233455555 567999988
Q ss_pred CCCCCcceeeeeeeeecccCCCceecC---CcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCC
Q psy15549 324 SDSTRKPISVTHVFTRACLNKPAVCLP---SLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQH 400 (621)
Q Consensus 324 ~d~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 400 (621)
.|+.+++|++.... ....+. .+...+.++.+.+ +++++++.||.|++||+.+
T Consensus 337 ~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~------------------~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 337 ADSTVKIWDIKTGQ-------CLQTLQGPNKHQSAVTCLQFNK------------------NFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp TTSCEEEEETTTCC-------EEEEECSTTSCSSCEEEEEECS------------------SEEEEEETTSEEEEEETTT
T ss_pred CCCeEEEEECCCCc-------EEEEEccCCCCCCCEEEEEECC------------------CEEEEEeCCCeEEEEECCC
Confidence 89999999975322 222222 2566677777654 7899999999999999999
Q ss_pred CceeEEEe----cccccceEEEEEcCCCCeEEEEeCCCc----EEEEEecC
Q psy15549 401 ASPFAFIA----NIHYTKLTDITWSSDGKVLIASSTDGY----CSIISFGD 443 (621)
Q Consensus 401 ~~~~~~~~----~~h~~~v~~~~~spdg~~l~s~s~dg~----i~iw~~~~ 443 (621)
++.+..+. .+|...|++++|+|+|.+|++|+.||+ |.+||+..
T Consensus 392 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 392 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99888773 357889999999999999999999998 99999974
No 57
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=310.38 Aligned_cols=317 Identities=13% Similarity=0.178 Sum_probs=233.8
Q ss_pred eecCCCCeEEEeccccccCCcceEEEEecC---CceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEE
Q psy15549 9 SWHNRDPVLSVDIQLKQEKDNCYRIVTGGA---DSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVN 85 (621)
Q Consensus 9 ~~~h~~~v~~l~~spd~~~~~~~~l~tg~~---dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 85 (621)
...|.++|++++|+|++. .++++|+. ||.|+ ||++.++..... ...+|...|.
T Consensus 14 ~~~h~~~v~~~~~~p~~~----~l~~~~s~~~~d~~v~--------------iw~~~~~~~~~~------~~~~~~~~v~ 69 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSA----KFVTMGNFARGTGVIQ--------------LYEIQHGDLKLL------REIEKAKPIK 69 (357)
T ss_dssp EEECSSCEEEEEECTTSS----EEEEEEC--CCCEEEE--------------EEEECSSSEEEE------EEEEESSCEE
T ss_pred ccCCCCceEEEEEcCCCc----eEEEecCccCCCcEEE--------------EEeCCCCcccce------eeecccCcEE
Confidence 345999999999999996 36667776 99999 999887653221 1347899999
Q ss_pred EEEEccC---CCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEE------CCCCCEEEEEeCCCcEEE
Q psy15549 86 VVRFSPN---GELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRF------SPNGELLASGDDESTIIV 155 (621)
Q Consensus 86 ~l~~spd---g~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~------sp~g~~l~s~s~dg~i~v 155 (621)
+++|+|+ +.+|++++ ++.|++|++..+. .....+.+|...|.+++| +|++++|++++.||.|++
T Consensus 70 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v 143 (357)
T 3i2n_A 70 CGTFGATSLQQRYLATGDFGGNLHIWNLEAPE------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKV 143 (357)
T ss_dssp EEECTTCCTTTCCEEEEETTSCEEEECTTSCS------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred EEEEcCCCCCCceEEEecCCCeEEEEeCCCCC------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEE
Confidence 9999998 68999888 8899999998763 256677899999999954 789999999999999999
Q ss_pred EEccCCCCCCCCCCCCcccccccccceeeeeeecCC----CCCeEEEE----ECCCCCEEEEEeCCCeEEEEECCCCcEE
Q psy15549 156 WKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGH----LEDVYDIS----WSPTSTHLISGSVDNTAIMWDVHKGKNL 227 (621)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~i~----~spd~~~l~s~~~dg~i~vwd~~~~~~~ 227 (621)
||+.++... ...+..| ...+.+++ |+|++++|++++.||.|++||+++++..
T Consensus 144 wd~~~~~~~--------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 203 (357)
T 3i2n_A 144 WDPRQKDDP--------------------VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR 203 (357)
T ss_dssp ECTTSCSSC--------------------SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE
T ss_pred EeCCCCCCc--------------------ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee
Confidence 999987622 1333333 34789998 7889999999999999999999998875
Q ss_pred EEeccCCcceEEEEEcC---CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceee
Q psy15549 228 GILTEHKKFVQGVAWDP---KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRR 304 (621)
Q Consensus 228 ~~~~~~~~~v~~l~~sp---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 304 (621)
.. ..|...|.+++|+| ++.+|++++.||.|++||+++++....+.. .....+...|.+
T Consensus 204 ~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------~~~~~~~~~v~~ 264 (357)
T 3i2n_A 204 WE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS------------------VSEKAHKSTVWQ 264 (357)
T ss_dssp EE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE------------------EEEECCSSCEEE
T ss_pred ee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee------------------eccCCCcCCEEE
Confidence 54 56889999999999 999999999999999999988765433320 011234567889
Q ss_pred eeecCCCC-eEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcE
Q psy15549 305 LTFSPDGQ-LLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRI 383 (621)
Q Consensus 305 ~~~spdg~-~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (621)
++|+|++. +|++++ .|+.+++|++.......... . .+..
T Consensus 265 ~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~--------~---------------------------~g~~ 304 (357)
T 3i2n_A 265 VRHLPQNRELFLTAG-----GAGGLHLWKYEYPIQRSKKD--------S---------------------------EGIE 304 (357)
T ss_dssp EEEETTEEEEEEEEE-----TTSEEEEEEEECCSCC--CC--------T---------------------------TSCC
T ss_pred EEECCCCCcEEEEEe-----CCCcEEEeecCCCccccccc--------C---------------------------CCCc
Confidence 99999988 677766 66677777665211100000 0 0000
Q ss_pred EEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEE-EEeCCCcEEEEEecCCcC
Q psy15549 384 VIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLI-ASSTDGYCSIISFGDNEI 446 (621)
Q Consensus 384 l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~-s~s~dg~i~iw~~~~~~~ 446 (621)
. +..+. .+.+..+ .+|...|++++|+|+|++|+ +++.||.|++|++.+.+.
T Consensus 305 ~---~~~~~--------~~~~~~~-~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 305 M---GVAGS--------VSLLQNV-TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp C---CCCCE--------EEEEEEE-ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred c---ccccc--------cceeecc-ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 0 00000 1233344 46899999999999999998 899999999999987653
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=309.28 Aligned_cols=339 Identities=17% Similarity=0.236 Sum_probs=236.3
Q ss_pred ceeeecCCCCeEEEeccc-cccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccce------eeccccc
Q psy15549 6 PEISWHNRDPVLSVDIQL-KQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANV------EFASDLS 78 (621)
Q Consensus 6 ~~~~~~h~~~v~~l~~sp-d~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~------~~~~~~~ 78 (621)
..+...|.++|++++|+| +++ +||+|+.||.|+ +|++.++....... .......
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~-----~l~~~~~dg~i~--------------iw~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGR-----YMLSGGSDGVIV--------------LYDLENSSRQSYYTCKAVCSIGRDHPD 96 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCC-----EEEEEETTSCEE--------------EEECCCCSSSSCEEECEEEEECTTCTT
T ss_pred eeeeeccCCcEEEEEEecCCCC-----EEEEEcCCCeEE--------------EEECCCCcccceEeccccccccccccc
Confidence 345566999999999999 998 999999999999 77776654432200 0011124
Q ss_pred cccCcEEEEEEcc-CCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCC---CCEEEEEeCCCcE
Q psy15549 79 RHQKAVNVVRFSP-NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN---GELLASGDDESTI 153 (621)
Q Consensus 79 ~h~~~V~~l~~sp-dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~---g~~l~s~s~dg~i 153 (621)
+|...|.+++|+| ++.+|++++ |+.|++|++..+ .....+ .+...+.++.|+|. +.+|++++.|+.|
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL-------QTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKV 168 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT-------EEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSE
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC-------ccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeE
Confidence 6999999999999 778888887 888999999876 334333 36788999999984 4599999999999
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCc-EEEEe-
Q psy15549 154 IVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTST-HLISGSVDNTAIMWDVHKGK-NLGIL- 230 (621)
Q Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~-~l~s~~~dg~i~vwd~~~~~-~~~~~- 230 (621)
++||+.++..+ ..+.+|...|.+++|+|++. +|++++.||.|++||++++. .+..+
T Consensus 169 ~~~d~~~~~~~---------------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~ 227 (408)
T 4a11_B 169 QLCDLKSGSCS---------------------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227 (408)
T ss_dssp EEEESSSSCCC---------------------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECC
T ss_pred EEEeCCCccee---------------------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccc
Confidence 99999988754 56678999999999999998 58999999999999998765 34443
Q ss_pred --------------ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccC
Q psy15549 231 --------------TEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDD 296 (621)
Q Consensus 231 --------------~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (621)
..|...|.+++|+|++++|++++.||.|++||+.+++....+.......
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------------- 290 (408)
T 4a11_B 228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNN----------------- 290 (408)
T ss_dssp TTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCC-----------------
T ss_pred ccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccc-----------------
Confidence 5688899999999999999999999999999999876543332110000
Q ss_pred CcccceeeeeecCCC-CeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCC
Q psy15549 297 TMKSFFRRLTFSPDG-QLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKP 375 (621)
Q Consensus 297 ~~~~~i~~~~~spdg-~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (621)
.... .+....
T Consensus 291 -----------~~~~~~~~~~~---------------------------------------------------------- 301 (408)
T 4a11_B 291 -----------SKKGLKFTVSC---------------------------------------------------------- 301 (408)
T ss_dssp -----------CSSCCCCEECC----------------------------------------------------------
T ss_pred -----------ccccceeEEec----------------------------------------------------------
Confidence 0000 000000
Q ss_pred CccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCC
Q psy15549 376 LFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSG 455 (621)
Q Consensus 376 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~ 455 (621)
..+..+++++.++.|++||+.+++.+..+ .+|...|++++|+|++++|++++.||.|++|++.+++..........
T Consensus 302 ---~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 377 (408)
T 4a11_B 302 ---GCSSEFVFVPYGSTIAVYTVYSGEQITML-KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT 377 (408)
T ss_dssp ---SSSSCEEEEEETTEEEEEETTTCCEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------
T ss_pred ---CCCceEEEEecCCEEEEEECcCCcceeee-ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe
Confidence 02355777788999999999999999888 46999999999999999999999999999999999887655443322
Q ss_pred cccccCCCCCCCCcccCCCcccHHHhccc
Q psy15549 456 EESKENDPTKGEPVRSEDKPRSAEQAKGE 484 (621)
Q Consensus 456 ~~~~~~~~~~~~~~~s~~~~~~~~~w~~~ 484 (621)
.. ...........+...++.+++|...
T Consensus 378 ~~--~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 378 KS--QLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -----------------------------
T ss_pred cc--ccccccceeecccCccCceeecCCc
Confidence 21 1122233345566778899999754
No 59
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8.2e-38 Score=313.89 Aligned_cols=311 Identities=14% Similarity=0.219 Sum_probs=229.3
Q ss_pred eeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 7 EISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 7 ~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
.+..+|.++|++++|+|+.. +....+++++.++.|+ +|++.++..... +. ......|...|.+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~-~~~~~~~~~~~~~~v~--------------vw~~~~~~~~~~-~~-~~~~~~~~~~v~~ 74 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSK-EGDPLVFATVGSNRVT--------------LYECHSQGEIRL-LQ-SYVDADADENFYT 74 (366)
T ss_dssp EEECTTCSCEEEEEECTTCC-TTSCEEEEEEETTEEE--------------EEEECGGGCEEE-EE-EEECSCTTCCEEE
T ss_pred EeecCCCCceEEEEEecccC-CCCceEEEECCCCEEE--------------EEEcCCCcEEEe-ee-eccccCCCCcEEE
Confidence 34557999999999999511 0012677777777999 888876654322 00 0011236788999
Q ss_pred EEEccC----CCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECC-CCCEEEEEeCCCcEEEEEccC
Q psy15549 87 VRFSPN----GELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP-NGELLASGDDESTIIVWKQKT 160 (621)
Q Consensus 87 l~~spd----g~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp-~g~~l~s~s~dg~i~vwd~~~ 160 (621)
++|+|+ |++|++|+ |+.|++|++..+ ..+..+.+|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus 75 ~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 75 CAWTYDSNTSHPLLAVAGSRGIIRIINPITM-------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp EEEEECTTTCCEEEEEEETTCEEEEECTTTC-------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred EEeccCCCCCCCEEEEecCCCEEEEEEchhc-------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 999999 67899887 888999999876 55677889999999999999 999999999999999999988
Q ss_pred CCCCCCCCCCCcccccccccceeeeeee---cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEec------
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKIL---RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILT------ 231 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~------ 231 (621)
++.+ ..+ .+|...|.+++|+|++++|++++.||.|++||+++++....+.
T Consensus 148 ~~~~---------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 206 (366)
T 3k26_A 148 DTLV---------------------AIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 206 (366)
T ss_dssp TEEE---------------------EEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCC
T ss_pred CeEE---------------------EEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEec
Confidence 7643 333 6899999999999999999999999999999998775543333
Q ss_pred ----------------------cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCcccccccc
Q psy15549 232 ----------------------EHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKV 289 (621)
Q Consensus 232 ----------------------~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (621)
.|...|.+++|+ +++|++++.|+.|++||+.++........... ...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~---------~~~ 275 (366)
T 3k26_A 207 PNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSE---------SNV 275 (366)
T ss_dssp GGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTC---------CCE
T ss_pred CCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCC---------cch
Confidence 389999999999 78999999999999999987653211100000 000
Q ss_pred ccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecC
Q psy15549 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELK 369 (621)
Q Consensus 290 ~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (621)
..+.....+...|.+++|+|+
T Consensus 276 ~~~~~~~~~~~~v~~~~~s~~----------------------------------------------------------- 296 (366)
T 3k26_A 276 TILGRFDYSQCDIWYMRFSMD----------------------------------------------------------- 296 (366)
T ss_dssp EEEEEEECSSCCSSCCCCEEC-----------------------------------------------------------
T ss_pred heeccccccCCcEEEEEEcCC-----------------------------------------------------------
Confidence 001111122223344444444
Q ss_pred CCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeE----EEeccc--ccceEEEEEcCCCCeEEEEeCCCcEEEEEec
Q psy15549 370 PSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFA----FIANIH--YTKLTDITWSSDGKVLIASSTDGYCSIISFG 442 (621)
Q Consensus 370 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~h--~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~ 442 (621)
.++.+|++++.||.|++||+.+++... .+ .+| ...|++++|+|+|++|++++.||.|++||+.
T Consensus 297 ---------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 297 ---------FWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTL-THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ---------TTSSEEEEECTTSCEEEEECCSSSGGGCEEEEE-CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ---------CCCcEEEEEecCCcEEEEECCCCCCccccceEE-cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 004555666688999999998876432 44 345 7899999999999999999999999999985
No 60
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=297.65 Aligned_cols=291 Identities=19% Similarity=0.264 Sum_probs=243.4
Q ss_pred ceeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEE
Q psy15549 6 PEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVN 85 (621)
Q Consensus 6 ~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 85 (621)
...+.+|.++|++++| |++. +|++|+.||.|+ +||+.++... ..+..|...|.
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~-----~l~s~~~dg~v~--------------vw~~~~~~~~-------~~~~~~~~~v~ 63 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDS-----KVASVSRDGTVR--------------LWSKDDQWLG-------TVVYTGQGFLN 63 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETT-----EEEEEETTSEEE--------------EEEESSSEEE-------EEEEECSSCEE
T ss_pred HHHhhCCCCCcEEEEe-cCCC-----EEEEEEcCCcEE--------------EEECCCCEEE-------EEeecCCccEE
Confidence 4456779999999999 9998 999999999999 9998765443 34778999999
Q ss_pred EEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q psy15549 86 VVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDL 164 (621)
Q Consensus 86 ~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~ 164 (621)
+++|+|++++|++++ ++.+++|++...... .....+.+|...|.+++| ++++|++++.||.|++|| ...
T Consensus 64 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~-- 133 (313)
T 3odt_A 64 SVCYDSEKELLLFGGKDTMINGVPLFATSGE----DPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGS-- 133 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTCCTTS----CC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTE--
T ss_pred EEEECCCCCEEEEecCCCeEEEEEeeecCCC----CcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCc--
Confidence 999999999999988 888999998765322 445667889999999999 677999999999999999 222
Q ss_pred CCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEecc-CCcceEEEEE
Q psy15549 165 PEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP-TSTHLISGSVDNTAIMWDVHKGKNLGILTE-HKKFVQGVAW 242 (621)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~ 242 (621)
....+..|...+.+++|+| ++++|++++.||.|++|| ..+....+.. |...+.+++|
T Consensus 134 -------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~ 192 (313)
T 3odt_A 134 -------------------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAV 192 (313)
T ss_dssp -------------------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEE
T ss_pred -------------------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEE
Confidence 2356778999999999998 899999999999999999 4566677766 8999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecccccc
Q psy15549 243 DPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLE 322 (621)
Q Consensus 243 sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~ 322 (621)
+|++. |++++.||.|++||+++++.+..+.. +...|.+++|+|++ .|++
T Consensus 193 ~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~-----------------------~~~~i~~~~~~~~~-~l~~------ 241 (313)
T 3odt_A 193 VDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG-----------------------HESFVYCIKLLPNG-DIVS------ 241 (313)
T ss_dssp EETTE-EEEEETTSEEEEEETTTCCEEEEEEC-----------------------CSSCEEEEEECTTS-CEEE------
T ss_pred cCCCe-EEEccCCCeEEEEECCchhhhhhhhc-----------------------CCceEEEEEEecCC-CEEE------
Confidence 99998 88999999999999999887776642 34456888888887 3444
Q ss_pred CCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCc
Q psy15549 323 NSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHAS 402 (621)
Q Consensus 323 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 402 (621)
++.||.|++||+.+++
T Consensus 242 ----------------------------------------------------------------~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 242 ----------------------------------------------------------------CGEDRTVRIWSKENGS 257 (313)
T ss_dssp ----------------------------------------------------------------EETTSEEEEECTTTCC
T ss_pred ----------------------------------------------------------------EecCCEEEEEECCCCc
Confidence 3478999999999999
Q ss_pred eeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccC
Q psy15549 403 PFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYV 451 (621)
Q Consensus 403 ~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~ 451 (621)
.+..+. .|...|++++|+|+|+ |++++.||.|++|++.+++......
T Consensus 258 ~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 258 LKQVIT-LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EEEEEE-CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred eeEEEe-ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 888884 5888999999999998 6679999999999999887665443
No 61
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-37 Score=320.64 Aligned_cols=226 Identities=16% Similarity=0.162 Sum_probs=178.9
Q ss_pred ecCCCCeEEEeccc-cccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEE
Q psy15549 10 WHNRDPVLSVDIQL-KQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVR 88 (621)
Q Consensus 10 ~~h~~~v~~l~~sp-d~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 88 (621)
.+|.++|++++|+| +++ +||+|+.||.|+ |||+........ ..... ..+|...|.+++
T Consensus 60 ~~h~~~V~~~~~s~~~~~-----~l~s~s~dg~v~--------------vwd~~~~~~~~~-~~~~~-~~~h~~~v~~~~ 118 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETP-----YLITGSDQGVIK--------------IWNLKEIIVGEV-YSSSL-TYDCSSTVTQIT 118 (437)
T ss_dssp TTTTSCEEEEEEECSSSC-----EEEEEETTSEEE--------------EEEHHHHHTTCC-CSCSE-EEECSSCEEEEE
T ss_pred cCCCCceEEEEECCCCCC-----EEEEecCCceEE--------------EeECcccccCcc-cceee-eccCCCCEEEEE
Confidence 67899999999999 998 999999999999 888876221110 00011 125899999999
Q ss_pred EccCCCEEEEEc-CCceEEEEec---cCcccc-ccceecccc--cc--cCCCeEEEE--ECCCCCEEEEEeCCCcEEEEE
Q psy15549 89 FSPNGELLASGD-DVGKEIWYLT---ERESGI-ANVEFASDL--SR--HQKAVNVVR--FSPNGELLASGDDESTIIVWK 157 (621)
Q Consensus 89 ~spdg~~las~~-d~~v~iw~~~---~~~~~~-~~~~~~~~~--~~--h~~~V~~i~--~sp~g~~l~s~s~dg~i~vwd 157 (621)
|+|++.+|++++ |+.|++|++. .+.... .....+..+ .. +...+.++. +++++.+|++|+.|+.|++||
T Consensus 119 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 198 (437)
T 3gre_A 119 MIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFD 198 (437)
T ss_dssp ECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEE
T ss_pred EeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 999999999988 8889999995 221000 000111111 12 556777777 668899999999999999999
Q ss_pred ccCCCCCCCCCCCCcccccccccceeeeeeecC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCC
Q psy15549 158 QKTDQDLPEFPSSNLDEENVNKEHWIVTKILRG--HLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILT-EHK 234 (621)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~ 234 (621)
+.+++.+ ..+.+ |...|++++|+|++++|++|+.||.|++||+++++++..+. .|.
T Consensus 199 ~~~~~~~---------------------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 257 (437)
T 3gre_A 199 IRTLERL---------------------QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH 257 (437)
T ss_dssp TTTCCEE---------------------EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC
T ss_pred CCCCeee---------------------EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC
Confidence 9988753 45555 88999999999999999999999999999999999998886 788
Q ss_pred cceEEEEEcC----CCCEEEEEeCCCcEEEEEccCceeeeecccCCC
Q psy15549 235 KFVQGVAWDP----KNQYVATLSSDRSLRTYSIQSKKVISRACRSKL 277 (621)
Q Consensus 235 ~~v~~l~~sp----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 277 (621)
..|.+++|+| ++.+|++++.||.|++||+++++.+..+..+..
T Consensus 258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (437)
T 3gre_A 258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE 304 (437)
T ss_dssp EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence 8999996664 678999999999999999999998888765543
No 62
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.2e-36 Score=311.23 Aligned_cols=292 Identities=21% Similarity=0.348 Sum_probs=240.1
Q ss_pred CeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCC
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 94 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 94 (621)
.+..|+||+++ +||+|. |+.|+ |||+.+++.... ..+.+|...|++|+|+|+|+
T Consensus 107 y~~~l~wS~~n------~lAvgl-d~tV~--------------lWd~~tg~~~~~-----~~~~~~~~~V~sv~fspdg~ 160 (420)
T 4gga_A 107 YLNLVDWSSGN------VLAVAL-DNSVY--------------LWSASSGDILQL-----LQMEQPGEYISSVAWIKEGN 160 (420)
T ss_dssp TCBCEEECTTS------EEEEEE-TTEEE--------------EEETTTCCEEEE-----EECCSTTCCEEEEEECTTSS
T ss_pred cceeEEECCCC------EEEEEe-CCEEE--------------EEECCCCCEEEE-----EEecCCCCcEEEEEECCCCC
Confidence 35779999865 888876 89999 999887754322 23567888999999999999
Q ss_pred EEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcc
Q psy15549 95 LLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLD 173 (621)
Q Consensus 95 ~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 173 (621)
+||+|+ |+.|+||++..+ ..+..+.+|...|.+++|+ +.+|++|+.|+.+++||.......
T Consensus 161 ~lasgs~Dg~v~iWd~~~~-------~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~--------- 222 (420)
T 4gga_A 161 YLAVGTSSAEVQLWDVQQQ-------KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH--------- 222 (420)
T ss_dssp EEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE---------
T ss_pred EEEEEECCCeEEEEEcCCC-------cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccccee---------
Confidence 999998 889999999887 6778889999999998874 679999999999999998776542
Q ss_pred cccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCc----EEEEeccCCcceEEEEEcCCC-CE
Q psy15549 174 EENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGK----NLGILTEHKKFVQGVAWDPKN-QY 248 (621)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~l~~sp~~-~~ 248 (621)
...+.+|...+..+.|+|+++++++++.|+.+++|+..+++ .+.....|...|.+++|+|++ ..
T Consensus 223 -----------~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~ 291 (420)
T 4gga_A 223 -----------VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 291 (420)
T ss_dssp -----------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTE
T ss_pred -----------eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccE
Confidence 36678999999999999999999999999999999998765 345667899999999999976 45
Q ss_pred EEEE--eCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCC
Q psy15549 249 VATL--SSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDS 326 (621)
Q Consensus 249 l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~ 326 (621)
++++ +.|+.|++||+.+++....+.. ...+.++.|+|+++.++++++
T Consensus 292 la~~~gs~D~~I~iwd~~t~~~~~~~~~------------------------~~~v~~~~~~~~~~~lv~~sg------- 340 (420)
T 4gga_A 292 LATGGGTSDRHIRIWNVCSGACLSAVDA------------------------HSQVCSILWSPHYKELISGHG------- 340 (420)
T ss_dssp EEEEECTTTCEEEEEETTTTEEEEEEEC------------------------SSCEEEEEEETTTTEEEEEEC-------
T ss_pred EEEEeecCCCEEEEEeCCccccceeecc------------------------ccceeeeeecCCCCeEEEEEe-------
Confidence 5543 4799999999999988776642 234678889998888876552
Q ss_pred CCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEE
Q psy15549 327 TRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAF 406 (621)
Q Consensus 327 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 406 (621)
+.|+.|+|||+.+++++..
T Consensus 341 -------------------------------------------------------------~~d~~I~iwd~~~~~~v~~ 359 (420)
T 4gga_A 341 -------------------------------------------------------------FAQNQLVIWKYPTMAKVAE 359 (420)
T ss_dssp -------------------------------------------------------------TTTCCEEEEETTTCCEEEE
T ss_pred -------------------------------------------------------------cCCCEEEEEECCCCcEEEE
Confidence 2579999999999999998
Q ss_pred EecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCC
Q psy15549 407 IANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPS 454 (621)
Q Consensus 407 ~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 454 (621)
+ .+|...|++++|+|||++||||+.||+|+|||+.+....+....+.
T Consensus 360 l-~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~ 406 (420)
T 4gga_A 360 L-KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREK 406 (420)
T ss_dssp E-CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-------
T ss_pred E-cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhcc
Confidence 8 5799999999999999999999999999999998766555444433
No 63
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.4e-36 Score=312.61 Aligned_cols=340 Identities=18% Similarity=0.293 Sum_probs=259.2
Q ss_pred eeecCCCCe-EEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 8 ISWHNRDPV-LSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 8 ~~~~h~~~v-~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
...+|.+.| .|+.| ++. +|++|+.||.|+ +||+.+++.. ..+.+|.+.|.+
T Consensus 116 ~l~~h~~~v~~~~~~--~~~-----~l~sgs~dg~i~--------------vwd~~~~~~~-------~~~~~h~~~V~~ 167 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDN-----YVITGADDKMIR--------------VYDSINKKFL-------LQLSGHDGGVWA 167 (464)
T ss_dssp EEECCSSSCEEEEEE--ETT-----EEEEEETTSCEE--------------EEETTTTEEE-------EEECCCSSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCC-----EEEEEcCCCcEE--------------EEECCCCcEE-------EEEeCCCcCEEE
Confidence 445676664 66666 555 999999999999 9988776543 347899999999
Q ss_pred EEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEEC--CCCCEEEEEeCCCcEEEEEccCCCC
Q psy15549 87 VRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFS--PNGELLASGDDESTIIVWKQKTDQD 163 (621)
Q Consensus 87 l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s--p~g~~l~s~s~dg~i~vwd~~~~~~ 163 (621)
++|+|++ +|++|+ |+.|++|++..+ .....+.+|...|.+++|+ +++.+|++|+.||.|++||+.+...
T Consensus 168 l~~~~~~-~l~s~s~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 168 LKYAHGG-ILVSGSTDRTVRVWDIKKG-------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239 (464)
T ss_dssp EEECSTT-EEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred EEEcCCC-EEEEEeCCCCEEEEECCCC-------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence 9999998 777776 999999999877 6677888999999999998 5778999999999999999998765
Q ss_pred CCCCCCCCcccc--cccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEE
Q psy15549 164 LPEFPSSNLDEE--NVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVA 241 (621)
Q Consensus 164 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~ 241 (621)
............ ............+.+|...|.++ ++++++|++++.||.|++||+.+++++..+.+|...|.+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 317 (464)
T 3v7d_B 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 317 (464)
T ss_dssp C------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred cccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEE
Confidence 433211110000 00001111245678899999887 56788999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccc
Q psy15549 242 WDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCL 321 (621)
Q Consensus 242 ~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~ 321 (621)
|+|++++|++++.||.|++||+++++.+..+.. +...|.+++|+ +.+|++++
T Consensus 318 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----------------------h~~~v~~~~~~--~~~l~s~s--- 369 (464)
T 3v7d_B 318 YDHERKRCISASMDTTIRIWDLENGELMYTLQG-----------------------HTALVGLLRLS--DKFLVSAA--- 369 (464)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTTEEEEEECC-----------------------CSSCEEEEEEC--SSEEEEEE---
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-----------------------CCCcEEEEEEc--CCEEEEEe---
Confidence 999999999999999999999999998877753 34456889997 57899998
Q ss_pred cCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCC
Q psy15549 322 ENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHA 401 (621)
Q Consensus 322 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 401 (621)
.|+.+++|++...... ....+...+..+.+.+ ++.++++++ ||.|++||+.++
T Consensus 370 --~dg~v~vwd~~~~~~~--------~~~~~~~~~~~~~~~~----------------~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 370 --ADGSIRGWDANDYSRK--------FSYHHTNLSAITTFYV----------------SDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp --TTSEEEEEETTTCCEE--------EEEECTTCCCEEEEEE----------------CSSEEEEEE-TTEEEEEETTTC
T ss_pred --CCCcEEEEECCCCcee--------eeecCCCCccEEEEEe----------------CCCEEEEec-CCeEEEEECCCC
Confidence 8999999997632111 0111222233333333 567777776 999999999999
Q ss_pred ceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEe
Q psy15549 402 SPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISF 441 (621)
Q Consensus 402 ~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~ 441 (621)
+.+......|...|.+++|+ +...+++++.||.+.+|-+
T Consensus 423 ~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 423 KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 98887556789999999997 3345555667776666544
No 64
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=310.72 Aligned_cols=300 Identities=15% Similarity=0.218 Sum_probs=238.5
Q ss_pred CCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEcc
Q psy15549 12 NRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP 91 (621)
Q Consensus 12 h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 91 (621)
|.+.|++++|+|+++ +|++|+.||.|+ +|+ .++.. ...+.+|...|.+++|+|
T Consensus 107 ~~~~v~~~~~s~~~~-----~l~~~~~dg~i~--------------i~~-~~~~~-------~~~~~~~~~~v~~~~~~~ 159 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGN-----SIVTGVENGELR--------------LWN-KTGAL-------LNVLNFHRAPIVSVKWNK 159 (425)
T ss_dssp -CBCEEEEEECTTSS-----EEEEEETTSCEE--------------EEE-TTSCE-------EEEECCCCSCEEEEEECT
T ss_pred CCCceEEEEEcCCCC-----EEEEEeCCCeEE--------------EEe-CCCCe-------eeeccCCCccEEEEEECC
Confidence 688999999999998 999999999999 888 22222 334788999999999999
Q ss_pred CCCEEEEEc-CCceEEEEeccCccccccceecccccccCCC---------------eEEEEECCCCCEEEEEeCCCcEEE
Q psy15549 92 NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKA---------------VNVVRFSPNGELLASGDDESTIIV 155 (621)
Q Consensus 92 dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~---------------V~~i~~sp~g~~l~s~s~dg~i~v 155 (621)
++++|++++ ++.+++|++..+ .....+..+... +.+++|+|++ .+++++.||.|++
T Consensus 160 ~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~ 231 (425)
T 1r5m_A 160 DGTHIISMDVENVTILWNVISG-------TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFV 231 (425)
T ss_dssp TSSEEEEEETTCCEEEEETTTT-------EEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEE
T ss_pred CCCEEEEEecCCeEEEEECCCC-------cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEE
Confidence 999999988 889999999876 455556666665 9999999875 6889999999999
Q ss_pred EEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCc
Q psy15549 156 WKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKK 235 (621)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 235 (621)
||+.++... ..+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+..|..
T Consensus 232 ~d~~~~~~~---------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 290 (425)
T 1r5m_A 232 YQITEKTPT---------------------GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ 290 (425)
T ss_dssp EETTCSSCS---------------------EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSS
T ss_pred EEcCCCcee---------------------eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCc
Confidence 999987654 55678999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEE
Q psy15549 236 FVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLI 315 (621)
Q Consensus 236 ~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~ 315 (621)
.|.+++|+|++ +|++++.|+.|++||+++++.+..+.. +...|.+++|+|++++|+
T Consensus 291 ~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------------------~~~~i~~~~~s~~~~~l~ 346 (425)
T 1r5m_A 291 SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV-----------------------DGVPIFAGRISQDGQKYA 346 (425)
T ss_dssp CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC-----------------------TTCCEEEEEECTTSSEEE
T ss_pred cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc-----------------------CCccEEEEEEcCCCCEEE
Confidence 99999999999 999999999999999999888776643 234578999999999998
Q ss_pred eccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEE
Q psy15549 316 APSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILL 395 (621)
Q Consensus 316 ~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 395 (621)
+++ .|+.+++|++....... ..+.+..++.
T Consensus 347 ~~~-----~dg~i~i~~~~~~~~~~------------------------------------------~~~~~~~~~~--- 376 (425)
T 1r5m_A 347 VAF-----MDGQVNVYDLKKLNSKS------------------------------------------RSLYGNRDGI--- 376 (425)
T ss_dssp EEE-----TTSCEEEEECHHHHC---------------------------------------------------------
T ss_pred EEE-----CCCeEEEEECCCCccce------------------------------------------eeeecccccc---
Confidence 887 67777777764211000 0000111111
Q ss_pred EeCCCCceeEEEeccccc--ceEEEEEcCCCCeEEEEeCCCcEEEEEec
Q psy15549 396 YDTQHASPFAFIANIHYT--KLTDITWSSDGKVLIASSTDGYCSIISFG 442 (621)
Q Consensus 396 wd~~~~~~~~~~~~~h~~--~v~~~~~spdg~~l~s~s~dg~i~iw~~~ 442 (621)
+.......+..+ .+|.. .|++++|+|++++|++++.||.|++|++.
T Consensus 377 ~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 377 LNPLPIPLYASY-QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp --CEECCEEEEE-CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cCcccchhhhhh-cCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 111122255555 45755 99999999999999999999999999985
No 65
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-36 Score=306.39 Aligned_cols=295 Identities=19% Similarity=0.291 Sum_probs=235.7
Q ss_pred cCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEc
Q psy15549 11 HNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFS 90 (621)
Q Consensus 11 ~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 90 (621)
.|.+.+++.++++++. .+++++.||.|+ +|++.++..... ....|...|.+++|+
T Consensus 89 ~~~~~~~~~~~~~s~~-----~l~~~~~d~~v~--------------lw~~~~~~~~~~------~~~~~~~~v~~v~~s 143 (401)
T 4aez_A 89 GIIDDYYLNLLDWSNL-----NVVAVALERNVY--------------VWNADSGSVSAL------AETDESTYVASVKWS 143 (401)
T ss_dssp TCCCCTTCBCEEECTT-----SEEEEEETTEEE--------------EEETTTCCEEEE------EECCTTCCEEEEEEC
T ss_pred CCcCCceEEEEeecCC-----CEEEEECCCeEE--------------EeeCCCCcEeEe------eecCCCCCEEEEEEC
Confidence 3444444433443344 678888999999 888877654322 112388999999999
Q ss_pred cCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q psy15549 91 PNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPS 169 (621)
Q Consensus 91 pdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 169 (621)
|++++|++|+ ++.|++|++..+ .....+.+|...|.+++| ++++|++++.||.|++||+.....
T Consensus 144 ~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~------ 208 (401)
T 4aez_A 144 HDGSFLSVGLGNGLVDIYDVESQ-------TKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH------ 208 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC------
T ss_pred CCCCEEEEECCCCeEEEEECcCC-------eEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc------
Confidence 9999999988 888999999876 566778899999999999 567999999999999999985443
Q ss_pred CCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCC-E
Q psy15549 170 SNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQ-Y 248 (621)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~ 248 (621)
....+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++. +
T Consensus 209 --------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 274 (401)
T 4aez_A 209 --------------QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274 (401)
T ss_dssp --------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTE
T ss_pred --------------eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCE
Confidence 2366788999999999999999999999999999999999999999999999999999999774 5
Q ss_pred EEEEe--CCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCC
Q psy15549 249 VATLS--SDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDS 326 (621)
Q Consensus 249 l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~ 326 (621)
+++++ .|+.|++||+.+++.+..+. +...|.+++|+|++++++++++
T Consensus 275 l~~~~gs~d~~i~i~d~~~~~~~~~~~------------------------~~~~v~~~~~s~~~~~l~~~~g------- 323 (401)
T 4aez_A 275 LATGGGTMDKQIHFWNAATGARVNTVD------------------------AGSQVTSLIWSPHSKEIMSTHG------- 323 (401)
T ss_dssp EEEECCTTTCEEEEEETTTCCEEEEEE------------------------CSSCEEEEEECSSSSEEEEEEC-------
T ss_pred EEEecCCCCCEEEEEECCCCCEEEEEe------------------------CCCcEEEEEECCCCCeEEEEee-------
Confidence 55654 69999999999988777663 2335789999999998887431
Q ss_pred CCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEE
Q psy15549 327 TRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAF 406 (621)
Q Consensus 327 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 406 (621)
+.||.|++||+.++.....
T Consensus 324 -------------------------------------------------------------~~dg~i~v~~~~~~~~~~~ 342 (401)
T 4aez_A 324 -------------------------------------------------------------FPDNNLSIWSYSSSGLTKQ 342 (401)
T ss_dssp -------------------------------------------------------------TTTCEEEEEEEETTEEEEE
T ss_pred -------------------------------------------------------------cCCCcEEEEecCCccceeE
Confidence 2578899999888655444
Q ss_pred E-ecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccC
Q psy15549 407 I-ANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYV 451 (621)
Q Consensus 407 ~-~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~ 451 (621)
. ..+|...|++++|+|+|++|++++.||.|++|++.+++......
T Consensus 343 ~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 343 VDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred EEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 2 24699999999999999999999999999999999988765543
No 66
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-37 Score=319.10 Aligned_cols=342 Identities=14% Similarity=0.213 Sum_probs=247.8
Q ss_pred eeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 7 EISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 7 ~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
.....|...|++++|+|+++ +|++|+.||.|+ +|++....... .....+.+|...|.+
T Consensus 61 ~~~~~~~~~v~~~~~s~~~~-----~l~~~~~dg~v~--------------vw~~~~~~~~~---~~~~~~~~h~~~v~~ 118 (416)
T 2pm9_A 61 IASLQVDSKFNDLDWSHNNK-----IIAGALDNGSLE--------------LYSTNEANNAI---NSMARFSNHSSSVKT 118 (416)
T ss_dssp SCCCCCSSCEEEEEECSSSS-----CEEEEESSSCEE--------------EECCSSTTSCC---CEEEECCCSSSCCCE
T ss_pred EEEEecCCceEEEEECCCCC-----eEEEEccCCeEE--------------Eeecccccccc---cchhhccCCccceEE
Confidence 33456888999999999998 999999999999 88887632111 124457899999999
Q ss_pred EEEccC-CCEEEEEc-CCceEEEEeccCcccccc--ceecccccccCCCeEEEEECCC-CCEEEEEeCCCcEEEEEccCC
Q psy15549 87 VRFSPN-GELLASGD-DVGKEIWYLTERESGIAN--VEFASDLSRHQKAVNVVRFSPN-GELLASGDDESTIIVWKQKTD 161 (621)
Q Consensus 87 l~~spd-g~~las~~-d~~v~iw~~~~~~~~~~~--~~~~~~~~~h~~~V~~i~~sp~-g~~l~s~s~dg~i~vwd~~~~ 161 (621)
++|+|+ +++|++++ |+.|++|++......... ......+..|...|.+++|+|+ +.+|++++.||.|++||+.++
T Consensus 119 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 198 (416)
T 2pm9_A 119 VKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK 198 (416)
T ss_dssp EEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT
T ss_pred EEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC
Confidence 999998 89999988 889999999876411100 0122345679999999999998 789999999999999999987
Q ss_pred CCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCC-CEEEEEeCCC---eEEEEECCCC-cEEEEec-cCCc
Q psy15549 162 QDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTS-THLISGSVDN---TAIMWDVHKG-KNLGILT-EHKK 235 (621)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~-~~l~s~~~dg---~i~vwd~~~~-~~~~~~~-~~~~ 235 (621)
+.+..+.. .....+|...|.+++|+|++ .+|++++.|+ .|++||++++ ..+..+. +|..
T Consensus 199 ~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~ 263 (416)
T 2pm9_A 199 KEVIHLSY---------------TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK 263 (416)
T ss_dssp EEEEEECC---------------CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS
T ss_pred CcceEEec---------------cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC
Confidence 65321100 00012237899999999997 6899999998 9999999986 6677777 8999
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCC-Ce
Q psy15549 236 FVQGVAWDP-KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDG-QL 313 (621)
Q Consensus 236 ~v~~l~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg-~~ 313 (621)
.|.+++|+| ++++|++++.||.|++||+++++.+..+..+ ...|.+++|+|++ .+
T Consensus 264 ~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-----------------------~~~v~~~~~s~~~~~~ 320 (416)
T 2pm9_A 264 GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-----------------------GNWCFKTKFAPEAPDL 320 (416)
T ss_dssp CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-----------------------SSCCCCEEECTTCTTE
T ss_pred ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-----------------------CCceEEEEECCCCCCE
Confidence 999999999 9999999999999999999999887776533 3456899999999 78
Q ss_pred EEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcE
Q psy15549 314 LIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNI 393 (621)
Q Consensus 314 l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 393 (621)
|++++ .|+.+++|++........... . .... ......+...+..++..+..+.
T Consensus 321 l~s~~-----~d~~i~iw~~~~~~~~~~~~~----~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~- 373 (416)
T 2pm9_A 321 FACAS-----FDNKIEVQTLQNLTNTLDEQE----T-ETKQ----------------QESETDFWNNVSREESKEKPSV- 373 (416)
T ss_dssp EEECC-----SSSEEEEEESCCCCCSSCC-------------------------------------------CCSCCCS-
T ss_pred EEEEe-----cCCcEEEEEccCCCCCccccc----c-cccc----------------cCCccccccccccccccccccc-
Confidence 99888 899999999864321111000 0 0000 0000001111111111111111
Q ss_pred EEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCC
Q psy15549 394 LLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDN 444 (621)
Q Consensus 394 ~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~ 444 (621)
+.+ .....|...+++++|+|||++|++++.||.|+||++.+.
T Consensus 374 --~~~-------~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 374 --FHL-------QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp --SCC-------CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred --ccc-------cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 111 111347778999999999999999999999999998864
No 67
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-35 Score=288.22 Aligned_cols=253 Identities=17% Similarity=0.273 Sum_probs=204.0
Q ss_pred ccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECC--CCCEEEEEeCCCc
Q psy15549 76 DLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP--NGELLASGDDEST 152 (621)
Q Consensus 76 ~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp--~g~~l~s~s~dg~ 152 (621)
.+.+|.+.|++++|+|+|++||+|+ |+.|+||++..... .....+.+|.+.|++++|++ ++++|++|+.|++
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 4789999999999999999999998 88999999975321 45677889999999999986 4899999999999
Q ss_pred EEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCCc--EEE
Q psy15549 153 IIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT--STHLISGSVDNTAIMWDVHKGK--NLG 228 (621)
Q Consensus 153 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd--~~~l~s~~~dg~i~vwd~~~~~--~~~ 228 (621)
|++||+.++... ....+.+|...|.+++|+|+ +.+|++++.|+.|++||++++. ...
T Consensus 79 v~iWd~~~~~~~-------------------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 139 (297)
T 2pm7_B 79 VMIWKEENGRWS-------------------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI 139 (297)
T ss_dssp EEEEEBSSSCBC-------------------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred EEEEEcCCCceE-------------------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence 999999876421 12456789999999999997 8899999999999999998763 245
Q ss_pred EeccCCcceEEEEEcCC-------------CCEEEEEeCCCcEEEEEccCce----eeeecccCCCCCCCcccccccccc
Q psy15549 229 ILTEHKKFVQGVAWDPK-------------NQYVATLSSDRSLRTYSIQSKK----VISRACRSKLPVDSSHELFDKVVP 291 (621)
Q Consensus 229 ~~~~~~~~v~~l~~sp~-------------~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 291 (621)
.+.+|...|.+++|+|+ +++|++|+.|+.|++||++++. ....+
T Consensus 140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l------------------- 200 (297)
T 2pm7_B 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL------------------- 200 (297)
T ss_dssp EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE-------------------
T ss_pred eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe-------------------
Confidence 67789999999999997 5799999999999999998754 22222
Q ss_pred ccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCC
Q psy15549 292 LFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPS 371 (621)
Q Consensus 292 ~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (621)
..|...|.+++|+|++.
T Consensus 201 ----~~H~~~V~~v~~sp~~~----------------------------------------------------------- 217 (297)
T 2pm7_B 201 ----EGHSDWVRDVAWSPTVL----------------------------------------------------------- 217 (297)
T ss_dssp ----CCCSSCEEEEEECCCCS-----------------------------------------------------------
T ss_pred ----cCCCCceEEEEECCCCC-----------------------------------------------------------
Confidence 24455678888888751
Q ss_pred CCCCCccCCCcEEEEEEcCCcEEEEeCCCCc--eeEEEe--cccccceEEEEEcCCCCeEEEEeCCCcEEEEEec
Q psy15549 372 DDKPLFKLPYRIVIAVATENNILLYDTQHAS--PFAFIA--NIHYTKLTDITWSSDGKVLIASSTDGYCSIISFG 442 (621)
Q Consensus 372 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~--~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~ 442 (621)
.+.+|++++.|++|+|||+.... ...... ..|...|.+++|+|+|++||+++.||.|+||+..
T Consensus 218 --------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 218 --------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp --------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred --------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 01345555678888888877643 112222 3577899999999999999999999999999986
No 68
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.6e-36 Score=296.41 Aligned_cols=295 Identities=17% Similarity=0.267 Sum_probs=245.4
Q ss_pred eeeccccccccCcEEEEEEccC-CCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe
Q psy15549 71 VEFASDLSRHQKAVNVVRFSPN-GELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD 148 (621)
Q Consensus 71 ~~~~~~~~~h~~~V~~l~~spd-g~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s 148 (621)
+.+..+|.||.+.|++|+|+|+ +++|++|+ |+.|+||++...... .......+.+|...|.+++|+|++++|++++
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN--YGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC--SEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc--cceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 3455679999999999999997 68999988 899999999875422 1134567889999999999999999999999
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE-
Q psy15549 149 DESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNL- 227 (621)
Q Consensus 149 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~- 227 (621)
.|+.|++|+....... .....+...+..+.+++++.+|++++.|+.+++||+......
T Consensus 106 ~d~~i~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~ 164 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTT---------------------RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT 164 (340)
T ss_dssp TTSEEEEEETTTTEEE---------------------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE
T ss_pred ccccceEEeeccccee---------------------eeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE
Confidence 9999999998877642 455678888999999999999999999999999999766543
Q ss_pred EEeccCCcceEEEEEcCCC--CEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeee
Q psy15549 228 GILTEHKKFVQGVAWDPKN--QYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRL 305 (621)
Q Consensus 228 ~~~~~~~~~v~~l~~sp~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 305 (621)
....+|...+..++|++++ .++++++.|+.|++||+++++.+..+.. +...|.++
T Consensus 165 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-----------------------h~~~v~~~ 221 (340)
T 4aow_A 165 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG-----------------------HTGYLNTV 221 (340)
T ss_dssp ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECC-----------------------CSSCEEEE
T ss_pred EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecC-----------------------CCCcEEEE
Confidence 3456789999999999865 5788999999999999999988776643 34567899
Q ss_pred eecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEE
Q psy15549 306 TFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVI 385 (621)
Q Consensus 306 ~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 385 (621)
+|+|++++|++++
T Consensus 222 ~~s~~~~~l~s~s------------------------------------------------------------------- 234 (340)
T 4aow_A 222 TVSPDGSLCASGG------------------------------------------------------------------- 234 (340)
T ss_dssp EECTTSSEEEEEE-------------------------------------------------------------------
T ss_pred EECCCCCEEEEEe-------------------------------------------------------------------
Confidence 9999888777654
Q ss_pred EEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCccc---------CCCCCc
Q psy15549 386 AVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPY---------VPPSGE 456 (621)
Q Consensus 386 ~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~---------~~~~~~ 456 (621)
.|+.|++||+.+.+.+..+. +...|.+++|+|++. +++++.|+.|++||+.++.+...+ ..+...
T Consensus 235 ---~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (340)
T 4aow_A 235 ---KDGQAMLWDLNEGKHLYTLD--GGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ 308 (340)
T ss_dssp ---TTCEEEEEETTTTEEEEEEE--CSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCC
T ss_pred ---CCCeEEEEEeccCceeeeec--CCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC
Confidence 78899999999998888774 456899999999875 556667999999999877654443 346677
Q ss_pred ccccCCCCCCCCcccCCCcccHHHhccc
Q psy15549 457 ESKENDPTKGEPVRSEDKPRSAEQAKGE 484 (621)
Q Consensus 457 ~~~~~~~~~~~~~~s~~~~~~~~~w~~~ 484 (621)
+..+.|++++..+++++.|+.|++|+++
T Consensus 309 v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 309 CTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 8889999999999999999999999965
No 69
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-37 Score=308.32 Aligned_cols=305 Identities=12% Similarity=0.087 Sum_probs=238.6
Q ss_pred CCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEcc
Q psy15549 12 NRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP 91 (621)
Q Consensus 12 h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 91 (621)
-..+|.+|+|+|||+ ++|+++.|++|+ |.... ..+.+|...|.+++|+|
T Consensus 14 ~~~~v~sv~~SpDG~-----~iASas~D~TV~----------------d~~~~----------~~l~gh~~~v~~V~FsP 62 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-----LYLTTFPDISIG----------------QPKYA----------KDINCNSKNLFHVKEFP 62 (588)
T ss_dssp CSSSSCCEEECTTSC-----EEEECSSSEEEE----------------EECCC----------SCCSSBGGGTEEEEEEC
T ss_pred hhccEEEEEECCCCC-----EEEEEcCCceee----------------ccccc----------ceecCCCccEEEEEECC
Confidence 356899999999999 999999999996 22211 23578999999999999
Q ss_pred CCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCC
Q psy15549 92 NGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSN 171 (621)
Q Consensus 92 dg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 171 (621)
+| .++.+.+|+.... ....+ .|...|.+++|||+|++||+++.||.|++||... .
T Consensus 63 dg------~~~~~~~~~~~~~--------~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~-------- 117 (588)
T 2j04_A 63 LE------FENKLDFELAQQN--------GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--M-------- 117 (588)
T ss_dssp CC------CCCTTTTSCCCSS--------CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--E--------
T ss_pred CC------CcceEEEEeCCCc--------eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--e--------
Confidence 99 4555555554322 12222 4578999999999999999999999999999543 1
Q ss_pred cccccccccceeeeeeecCCCC-----CeEEEEECCCCCEEEEEeCCCeEEEEECCCCc-------EEEEe----ccCCc
Q psy15549 172 LDEENVNKEHWIVTKILRGHLE-----DVYDISWSPTSTHLISGSVDNTAIMWDVHKGK-------NLGIL----TEHKK 235 (621)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~-----~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~-------~~~~~----~~~~~ 235 (621)
...+. |.. .|.+++|||||++|++|+.||+|++||+.++. .+.++ .+|..
T Consensus 118 -------------l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~ 183 (588)
T 2j04_A 118 -------------LTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD 183 (588)
T ss_dssp -------------EEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC
T ss_pred -------------eeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc
Confidence 13344 544 59999999999999999999999999999875 35666 66778
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEccCceee---eecccCCCCCCCccccccccccccccCCcccceeeeeecCCCC
Q psy15549 236 FVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVI---SRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQ 312 (621)
Q Consensus 236 ~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~ 312 (621)
.|.+++|+|+| +++++.|+.|++||+.++... ..+. ..+...|.+++|+ |+
T Consensus 184 ~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~----------------------~~h~~~V~svaFs--g~ 237 (588)
T 2j04_A 184 WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ----------------------NASRRKITDLKIV--DY 237 (588)
T ss_dssp CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE----------------------CCCSSCCCCEEEE--TT
T ss_pred cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec----------------------ccccCcEEEEEEE--CC
Confidence 99999999999 888999999999999876632 2221 1223456788887 45
Q ss_pred eEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCc
Q psy15549 313 LLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENN 392 (621)
Q Consensus 313 ~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 392 (621)
.|++++ ++.
T Consensus 238 ~LASa~-----------------------------------------------------------------------~~t 246 (588)
T 2j04_A 238 KVVLTC-----------------------------------------------------------------------PGY 246 (588)
T ss_dssp EEEEEC-----------------------------------------------------------------------SSE
T ss_pred EEEEEe-----------------------------------------------------------------------CCe
Confidence 555432 589
Q ss_pred EEEEeCCCCceeEEEecccccceEEEEE--cCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCCcc
Q psy15549 393 ILLYDTQHASPFAFIANIHYTKLTDITW--SSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEPVR 470 (621)
Q Consensus 393 i~iwd~~~~~~~~~~~~~h~~~v~~~~~--spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (621)
|++||+.+++...... +|...|.+++| +||++.|++++.||+ ++|.++ ...+++++..++
T Consensus 247 IkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----------------~~~~spd~~l~a 308 (588)
T 2j04_A 247 VHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----------------ELHVTADNIIAP 308 (588)
T ss_dssp EEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------SEEEECCCSSHH
T ss_pred EEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------cEEECCCceEEE
Confidence 9999999887744442 69999999999 999999999999999 999988 144888988888
Q ss_pred cCCCcccHHHhcccCcccccccc-----CCCCCCCccC
Q psy15549 471 SEDKPRSAEQAKGEGKVLGEKQT-----GNKVSPTDKS 503 (621)
Q Consensus 471 s~~~~~~~~~w~~~~~~~~~~~~-----~~~~s~~~~~ 503 (621)
+. ++.+++|+..+..+..+.+ +..++|+++.
T Consensus 309 ~~--d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~ 344 (588)
T 2j04_A 309 YL--EKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYS 344 (588)
T ss_dssp HH--HHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSE
T ss_pred Ec--CCEEEEEECCCCceeeeccceEEEEEEECCCCCE
Confidence 75 9999999988776665554 5778888854
No 70
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.1e-35 Score=294.05 Aligned_cols=325 Identities=18% Similarity=0.260 Sum_probs=234.2
Q ss_pred ceeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEE
Q psy15549 6 PEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVN 85 (621)
Q Consensus 6 ~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 85 (621)
..+..+|.++|++++|+|+++ +||+|+.||.|+ +|++..+... ......+.+|...|.
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~-----~l~~~~~dg~i~--------------iw~~~~~~~~---~~~~~~~~~~~~~v~ 61 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGR-----HVATCSSDQHIK--------------VFKLDKDTSN---WELSDSWRAHDSSIV 61 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSS-----EEEEEETTSEEE--------------EEEECSSSCC---EEEEEEEECCSSCEE
T ss_pred cccCcccccceeEEEEcCCCC-----EEEEeeCCCeEE--------------EEECCCCCCc---ceecceeccCCCcEE
Confidence 356778999999999999998 999999999999 8988865432 234556789999999
Q ss_pred EEEEcc--CCCEEEEEc-CCceEEEEeccCccc--cccceecccccccCCCeEEEEECCC--CCEEEEEeCCCcEEEEEc
Q psy15549 86 VVRFSP--NGELLASGD-DVGKEIWYLTERESG--IANVEFASDLSRHQKAVNVVRFSPN--GELLASGDDESTIIVWKQ 158 (621)
Q Consensus 86 ~l~~sp--dg~~las~~-d~~v~iw~~~~~~~~--~~~~~~~~~~~~h~~~V~~i~~sp~--g~~l~s~s~dg~i~vwd~ 158 (621)
+++|+| ++++|++++ |+.|++|++..+... ...+.....+..|...|.+++|+|+ +++|++++.||.|++||+
T Consensus 62 ~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 62 AIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp EEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred EEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence 999999 699999988 888999999876321 1122446667789999999999999 999999999999999999
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC---CCEEEEEeCCCeEEEEECCCCcE--EEEeccC
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT---STHLISGSVDNTAIMWDVHKGKN--LGILTEH 233 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd---~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~ 233 (621)
.+++.+..+.... ...........|...+.+++|+|+ +.+|++++.++.+.+|+...+.. +..+.+|
T Consensus 142 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h 213 (351)
T 3f3f_A 142 LEPSDLRSWTLTS--------EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH 213 (351)
T ss_dssp SSTTCTTCCEEEE--------EEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC
T ss_pred CChHHhccccccc--------cccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC
Confidence 9988765441100 000001122368889999999997 89999999999998888877765 6777889
Q ss_pred CcceEEEEEcCCC----CEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecC
Q psy15549 234 KKFVQGVAWDPKN----QYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSP 309 (621)
Q Consensus 234 ~~~v~~l~~sp~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 309 (621)
...|.+++|+|++ ++|++++.||.|++||++.+......... ........+++
T Consensus 214 ~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~~~~~~~ 270 (351)
T 3f3f_A 214 KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEES-----------------------LTNSNMFDNSA 270 (351)
T ss_dssp CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------------
T ss_pred CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCc-----------------------ccceeccCCCc
Confidence 9999999999998 89999999999999999875433221100 00011122222
Q ss_pred CCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEc
Q psy15549 310 DGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVAT 389 (621)
Q Consensus 310 dg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (621)
....+..+. ..+..
T Consensus 271 ~~~~~~~~~------------------------------------------------------------------~~~~~ 284 (351)
T 3f3f_A 271 DVDMDAQGR------------------------------------------------------------------SDSNT 284 (351)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccc------------------------------------------------------------------ccccc
Confidence 222211111 11123
Q ss_pred CCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCccc
Q psy15549 390 ENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPY 450 (621)
Q Consensus 390 dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~ 450 (621)
...+.+|+....+.+..+ .+|...|++++|+|+|++|++++.||.|++|++.++.....+
T Consensus 285 ~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 285 EEKAELQSNLQVELLSEH-DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ------CCSEEEEEEEEE-CTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ceeeeecccccccEEEEE-ecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 345566666666666666 469999999999999999999999999999999987655443
No 71
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-36 Score=299.66 Aligned_cols=288 Identities=15% Similarity=0.202 Sum_probs=252.2
Q ss_pred cccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcE
Q psy15549 75 SDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTI 153 (621)
Q Consensus 75 ~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i 153 (621)
..+.+|.+.|++++|+|++++|++++ |+.|++|++..+ .....+.+|...|.+++|+|++++|++++.||.|
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 98 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSI 98 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 45889999999999999999999988 888999999876 6677788999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEECCCCc---
Q psy15549 154 IVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVD-----NTAIMWDVHKGK--- 225 (621)
Q Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~d-----g~i~vwd~~~~~--- 225 (621)
++||+.+++.+ ..+. +...|.+++|+|++++|++++.+ +.|++||+..+.
T Consensus 99 ~iwd~~~~~~~---------------------~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 99 KLWDVSNGQCV---------------------ATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp EEEETTTCCEE---------------------EEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred EEEECCCCcEE---------------------EEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce
Confidence 99999988753 3333 88899999999999999999998 999999997653
Q ss_pred --------EEEEeccCCc--ceEEEEEcCCCCEEEEEeCCCcEEEEEccC-ceeeeecccCCCCCCCccccccccccccc
Q psy15549 226 --------NLGILTEHKK--FVQGVAWDPKNQYVATLSSDRSLRTYSIQS-KKVISRACRSKLPVDSSHELFDKVVPLFH 294 (621)
Q Consensus 226 --------~~~~~~~~~~--~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (621)
.+..+..|.. .+.+++|+|++++|++++.||.|++||+++ ++.+..+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------- 216 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL-------------------- 216 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC--------------------
T ss_pred eecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec--------------------
Confidence 3344455655 899999999999999999999999999988 566655532
Q ss_pred cCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCC
Q psy15549 295 DDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDK 374 (621)
Q Consensus 295 ~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (621)
+...|.+++|+|++++|++++
T Consensus 217 ---~~~~v~~~~~~~~~~~l~~~~-------------------------------------------------------- 237 (369)
T 3zwl_B 217 ---HEKSISDMQFSPDLTYFITSS-------------------------------------------------------- 237 (369)
T ss_dssp ---CSSCEEEEEECTTSSEEEEEE--------------------------------------------------------
T ss_pred ---CCCceeEEEECCCCCEEEEec--------------------------------------------------------
Confidence 344578899998887776654
Q ss_pred CCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCC--------------cEEEEE
Q psy15549 375 PLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDG--------------YCSIIS 440 (621)
Q Consensus 375 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg--------------~i~iw~ 440 (621)
.|+.|++||+.+++.+..+. +...+.+++|+|++++|++++.++ .+++|+
T Consensus 238 --------------~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 238 --------------RDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp --------------TTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred --------------CCceEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 68899999999999888875 778999999999999999999988 899999
Q ss_pred ecCCcCCcccCCCCCcccccCCCCCCCCcccCCCcccHHHhcccCc
Q psy15549 441 FGDNEIGIPYVPPSGEESKENDPTKGEPVRSEDKPRSAEQAKGEGK 486 (621)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~~~~~ 486 (621)
+.+++....+..|...+..+.+++++..+++++.|+.+++|+++..
T Consensus 302 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 302 KIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred cCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 9999999999999999999999999999999999999999997765
No 72
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-36 Score=311.01 Aligned_cols=305 Identities=15% Similarity=0.100 Sum_probs=250.1
Q ss_pred CcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccC
Q psy15549 82 KAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKT 160 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~ 160 (621)
..+++++|+|+|++|++++ |+.+++|++... .....+..| ..+....|++++++|++|+.||.|++||+.+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIR-------DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSE-------ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccc-------ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 3455899999999999988 889999999876 444455555 4455567899999999999999999999987
Q ss_pred CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEE
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGV 240 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l 240 (621)
+.. ...+.+|...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.++
T Consensus 129 ~~~---------------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 187 (420)
T 3vl1_A 129 NLQ---------------------REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI 187 (420)
T ss_dssp CEE---------------------EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEE
T ss_pred cce---------------------eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEE
Confidence 754 25567899999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecccc
Q psy15549 241 AWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGC 320 (621)
Q Consensus 241 ~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~ 320 (621)
+|+|++++|++++.||.|++||+++++.+..+..+. .+...+.+++|.+++...+...
T Consensus 188 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~~~~~~-- 245 (420)
T 3vl1_A 188 AIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE--------------------NPHDGVNSIALFVGTDRQLHEI-- 245 (420)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT--------------------BTTCCEEEEEEEECCCSSCGGG--
T ss_pred EEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC--------------------CCCCCccEEEEecCCcceeeec--
Confidence 999999999999999999999999998887775332 2334567777776654332211
Q ss_pred ccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCC
Q psy15549 321 LENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQH 400 (621)
Q Consensus 321 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 400 (621)
+...+.++.|+ +++.++++++.||.|++||+.+
T Consensus 246 -------------------------------~~~~v~~~~~s----------------~~~~~l~~~~~dg~i~i~d~~~ 278 (420)
T 3vl1_A 246 -------------------------------STSKKNNLEFG----------------TYGKYVIAGHVSGVITVHNVFS 278 (420)
T ss_dssp -------------------------------CCCCCCTTCSS----------------CTTEEEEEEETTSCEEEEETTT
T ss_pred -------------------------------ccCcccceEEc----------------CCCCEEEEEcCCCeEEEEECCC
Confidence 11223333444 3778999999999999999999
Q ss_pred CceeEEEecccccceEEEEEcCCCC-eEEEEeCCCcEEEEEecCCcC-CcccCC-CCCcccccCCCCCCCCcccCCCccc
Q psy15549 401 ASPFAFIANIHYTKLTDITWSSDGK-VLIASSTDGYCSIISFGDNEI-GIPYVP-PSGEESKENDPTKGEPVRSEDKPRS 477 (621)
Q Consensus 401 ~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~s~dg~i~iw~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~ 477 (621)
++.+..+...|...|++++|+|+++ +|++++.||.|++||+.+++. ...+.. +...+..+ +.+++..+++++.|+.
T Consensus 279 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~ 357 (420)
T 3vl1_A 279 KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTS 357 (420)
T ss_dssp CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEE
T ss_pred CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCcc
Confidence 9988888777889999999999999 999999999999999998754 566665 55555555 4457789999999999
Q ss_pred HHHhcccC
Q psy15549 478 AEQAKGEG 485 (621)
Q Consensus 478 ~~~w~~~~ 485 (621)
+++|++..
T Consensus 358 v~iw~~~~ 365 (420)
T 3vl1_A 358 IKLDIISD 365 (420)
T ss_dssp EEEEEECC
T ss_pred EEEEeccC
Confidence 99999765
No 73
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.3e-35 Score=286.54 Aligned_cols=255 Identities=21% Similarity=0.354 Sum_probs=210.2
Q ss_pred eeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 7 EISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 7 ~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
.+..+|.++|++++|+|+|+ +||+|+.|+.|+ ||++..... +....+.+|.+.|.+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~-----~las~s~D~~v~--------------iw~~~~~~~-----~~~~~l~gH~~~V~~ 58 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGK-----RMATCSSDKTIK--------------IFEVEGETH-----KLIDTLTGHEGPVWR 58 (297)
T ss_dssp EECCSCSSCEEEEEECTTSS-----EEEEEETTSCEE--------------EEEBCSSCB-----CCCEEECCCSSCEEE
T ss_pred eeccCCcCceEEEEECCCCC-----EEEEEeCCCEEE--------------EEecCCCCc-----EEEEEEccccCCeEE
Confidence 35567999999999999999 999999999999 888864321 123468899999999
Q ss_pred EEEcc--CCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCC--CCEEEEEeCCCcEEEEEccCC
Q psy15549 87 VRFSP--NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN--GELLASGDDESTIIVWKQKTD 161 (621)
Q Consensus 87 l~~sp--dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~--g~~l~s~s~dg~i~vwd~~~~ 161 (621)
++|++ ++++|++|+ |+.|++|++..+.. .....+.+|...|.+++|+|+ +.+|++++.|+.|++||+.+.
T Consensus 59 v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~-----~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 59 VDWAHPKFGTILASCSYDGKVMIWKEENGRW-----SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp EEECCGGGCSEEEEEETTTEEEEEEBSSSCB-----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred EEecCCCcCCEEEEEcCCCEEEEEEcCCCce-----EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence 99986 489999988 88999999986521 334556789999999999997 889999999999999999876
Q ss_pred CCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC-------------CCEEEEEeCCCeEEEEECCCCc---
Q psy15549 162 QDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT-------------STHLISGSVDNTAIMWDVHKGK--- 225 (621)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd-------------~~~l~s~~~dg~i~vwd~~~~~--- 225 (621)
.... ...+.+|...|.+++|+|+ +++|++|+.|+.|++||++++.
T Consensus 134 ~~~~-------------------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~ 194 (297)
T 2pm7_B 134 GTTS-------------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194 (297)
T ss_dssp SCBC-------------------CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE
T ss_pred Ccee-------------------eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE
Confidence 4211 1456789999999999997 5799999999999999998876
Q ss_pred -EEEEeccCCcceEEEEEcCCC---CEEEEEeCCCcEEEEEccCcee--eeecccCCCCCCCccccccccccccccCCcc
Q psy15549 226 -NLGILTEHKKFVQGVAWDPKN---QYVATLSSDRSLRTYSIQSKKV--ISRACRSKLPVDSSHELFDKVVPLFHDDTMK 299 (621)
Q Consensus 226 -~~~~~~~~~~~v~~l~~sp~~---~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (621)
....+.+|...|.+++|+|++ .+|++++.|++|++||++.... .... .....+.
T Consensus 195 ~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~--------------------~~~~~~~ 254 (297)
T 2pm7_B 195 VLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL--------------------LKEEKFP 254 (297)
T ss_dssp EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE--------------------SSSSCCS
T ss_pred EEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee--------------------eecccCC
Confidence 567788999999999999985 8999999999999999976421 1111 0112345
Q ss_pred cceeeeeecCCCCeEEeccccccCCCCCCcceeee
Q psy15549 300 SFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVT 334 (621)
Q Consensus 300 ~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~ 334 (621)
..|.+++|+|+|++|++++ .|+.+++|+..
T Consensus 255 ~~v~~~~~s~~g~~las~~-----~D~~v~lw~~~ 284 (297)
T 2pm7_B 255 DVLWRASWSLSGNVLALSG-----GDNKVTLWKEN 284 (297)
T ss_dssp SCEEEEEECSSSCCEEEEE-----TTSCEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEc-----CCCcEEEEEEC
Confidence 6789999999999999999 89999999864
No 74
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.5e-37 Score=306.86 Aligned_cols=315 Identities=14% Similarity=0.159 Sum_probs=252.1
Q ss_pred cccccCcEEEEEEccC---CC--EEEEEcCCceEEEEeccCccccccceecccc--cccCCCeEEEEECCC----CCEEE
Q psy15549 77 LSRHQKAVNVVRFSPN---GE--LLASGDDVGKEIWYLTERESGIANVEFASDL--SRHQKAVNVVRFSPN----GELLA 145 (621)
Q Consensus 77 ~~~h~~~V~~l~~spd---g~--~las~~d~~v~iw~~~~~~~~~~~~~~~~~~--~~h~~~V~~i~~sp~----g~~l~ 145 (621)
..+|.+.|++++|+|+ +. ++++++++.|++|++..+... ..+..+ ..|...|.+++|+|+ +.+|+
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI----RLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE----EEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE----EeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 4589999999999984 33 666666889999999866311 111111 236688999999998 67999
Q ss_pred EEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC
Q psy15549 146 SGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP-TSTHLISGSVDNTAIMWDVHKG 224 (621)
Q Consensus 146 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-d~~~l~s~~~dg~i~vwd~~~~ 224 (621)
+|+.||.|++||+.+++.+ ..+.+|...|.+++|+| ++++|++++.||.|++||+.++
T Consensus 90 ~~~~dg~i~v~d~~~~~~~---------------------~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 148 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCI---------------------KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148 (366)
T ss_dssp EEETTCEEEEECTTTCCEE---------------------EEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred EecCCCEEEEEEchhceEe---------------------eeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence 9999999999999887643 56778999999999999 9999999999999999999999
Q ss_pred cEEEEe---ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccc
Q psy15549 225 KNLGIL---TEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSF 301 (621)
Q Consensus 225 ~~~~~~---~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (621)
+.+..+ ..|...|.+++|+|++++|++++.||.|++||+++++....+.
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------------------- 200 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK---------------------------- 200 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHH----------------------------
T ss_pred eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccc----------------------------
Confidence 998888 6899999999999999999999999999999999877655442
Q ss_pred eeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCC
Q psy15549 302 FRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPY 381 (621)
Q Consensus 302 i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (621)
..+.|+|++..++.... ... .........+...+.++.|+.
T Consensus 201 -~~~~~~~~~~~~~~~~~-----~~~---------------~~~~~~~~~~~~~v~~~~~~~------------------ 241 (366)
T 3k26_A 201 -ESYDYNPNKTNRPFISQ-----KIH---------------FPDFSTRDIHRNYVDCVRWLG------------------ 241 (366)
T ss_dssp -HHHTCCGGGCSSCCCCE-----EEC---------------CCSEEECSSCSSCCCEEEEET------------------
T ss_pred -eeEEecCCCCcccccce-----eec---------------cCccccccCCcceEEEEEEcC------------------
Confidence 23556666655544331 111 111122334556666666653
Q ss_pred cEEEEEEcCCcEEEEeCCCCce--------------eEEEecccccceEEEEEcCC--CCeEEEEeCCCcEEEEEecCCc
Q psy15549 382 RIVIAVATENNILLYDTQHASP--------------FAFIANIHYTKLTDITWSSD--GKVLIASSTDGYCSIISFGDNE 445 (621)
Q Consensus 382 ~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~h~~~v~~~~~spd--g~~l~s~s~dg~i~iw~~~~~~ 445 (621)
.++++++.|+.|++||+.++.. +..+ ..|...|++++|+|+ |++|++++.||.|++||+.+++
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF-DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE-ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc-cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 6899999999999999988754 4444 468889999999999 9999999999999999999987
Q ss_pred CCc----ccCCC--CCcccccCCCCCCCCcccCCCcccHHHhccc
Q psy15549 446 IGI----PYVPP--SGEESKENDPTKGEPVRSEDKPRSAEQAKGE 484 (621)
Q Consensus 446 ~~~----~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~w~~~ 484 (621)
... .+..+ ...+..+.+++++..+++++.|+.+++|++.
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 321 PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 554 66666 6789999999999999999999999999864
No 75
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.6e-36 Score=304.11 Aligned_cols=293 Identities=14% Similarity=0.123 Sum_probs=231.9
Q ss_pred eeeccccccccCcEEEEEEccCC-CEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECC-CCCEEEEE
Q psy15549 71 VEFASDLSRHQKAVNVVRFSPNG-ELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP-NGELLASG 147 (621)
Q Consensus 71 ~~~~~~~~~h~~~V~~l~~spdg-~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp-~g~~l~s~ 147 (621)
..+...+.+|...|++++|+|++ ++|++|+ |+.|++|++..+.. .......+|...|.+++|+| ++++|+++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-----TSFIQGMGPGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-----EEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-----ceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence 34455688999999999999999 8999988 88999999987632 22333457999999999999 78999999
Q ss_pred eCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Q psy15549 148 DDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNL 227 (621)
Q Consensus 148 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~ 227 (621)
+.|+.|++||+.+.. .. .......|...|.+++|+|++++|++++.|+.|++||+ +++.+
T Consensus 138 ~~d~~i~iwd~~~~~-~~------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~ 197 (383)
T 3ei3_B 138 SIRGATTLRDFSGSV-IQ------------------VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEI 197 (383)
T ss_dssp ETTTEEEEEETTSCE-EE------------------EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEE
T ss_pred eCCCEEEEEECCCCc-eE------------------EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEE
Confidence 999999999998532 11 11222345688999999999999999999999999999 67888
Q ss_pred EEeccCCcceEEEEEcCCCC-EEEEEeCCCcEEEEEccC----ceeeeecccCCCCCCCccccccccccccccCCcccce
Q psy15549 228 GILTEHKKFVQGVAWDPKNQ-YVATLSSDRSLRTYSIQS----KKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFF 302 (621)
Q Consensus 228 ~~~~~~~~~v~~l~~sp~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 302 (621)
..+..|...|.+++|+|+++ +|++++.|+.|++||+++ +..+..+ .+...|
T Consensus 198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------------------~~~~~v 253 (383)
T 3ei3_B 198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM------------------------PHEKPV 253 (383)
T ss_dssp EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE------------------------ECSSCE
T ss_pred EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe------------------------cCCCce
Confidence 89999999999999999999 999999999999999987 3333322 245567
Q ss_pred eeeeecC-CCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCC
Q psy15549 303 RRLTFSP-DGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPY 381 (621)
Q Consensus 303 ~~~~~sp-dg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (621)
.+++|+| ++++|++++
T Consensus 254 ~~~~~s~~~~~~l~~~~--------------------------------------------------------------- 270 (383)
T 3ei3_B 254 NAAYFNPTDSTKLLTTD--------------------------------------------------------------- 270 (383)
T ss_dssp EEEEECTTTSCEEEEEE---------------------------------------------------------------
T ss_pred EEEEEcCCCCCEEEEEc---------------------------------------------------------------
Confidence 8999999 888887766
Q ss_pred cEEEEEEcCCcEEEEeCCCCceeEEEec------c----------cccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCc
Q psy15549 382 RIVIAVATENNILLYDTQHASPFAFIAN------I----------HYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNE 445 (621)
Q Consensus 382 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~----------h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~ 445 (621)
.|+.|++||+.+++....+.. . ....+..++|+|+|++ +++.||.|++||+.+++
T Consensus 271 -------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 271 -------QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp -------SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred -------CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence 445555555555544333321 0 1235566888888877 88899999999999999
Q ss_pred CCcccCCC--CCcccccCCCCCCCCcccCCCcccHHHhcccC
Q psy15549 446 IGIPYVPP--SGEESKENDPTKGEPVRSEDKPRSAEQAKGEG 485 (621)
Q Consensus 446 ~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~w~~~~ 485 (621)
+...+..+ ...+..+.|++++..+++++ |+.+++|+++.
T Consensus 342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 342 LVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 98888763 45566669999999999886 89999998753
No 76
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.5e-36 Score=308.44 Aligned_cols=302 Identities=16% Similarity=0.219 Sum_probs=249.6
Q ss_pred eccccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCC----C---CEE
Q psy15549 73 FASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN----G---ELL 144 (621)
Q Consensus 73 ~~~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~----g---~~l 144 (621)
....+.+|.+.|++++|+| ++|++|+ |+.|++|++...... ..+.....+.+|...|.+++|+|+ + ++|
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-cCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 3455889999999999999 7888877 889999999876311 112356677799999999999999 9 999
Q ss_pred EEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCC-----CCCeEEEEEC----CCCCE-EEEEeCCC
Q psy15549 145 ASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGH-----LEDVYDISWS----PTSTH-LISGSVDN 214 (621)
Q Consensus 145 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~i~~s----pd~~~-l~s~~~dg 214 (621)
++++.||.|++|++.++...... ....+..| ...|.+++|+ |++++ |++++.||
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg 148 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKV----------------IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG 148 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCE----------------EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS
T ss_pred EEEcCCCCEEEEEccCCcccccc----------------cceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC
Confidence 99999999999999987752111 12556677 5899999999 99999 99999999
Q ss_pred eEEEEECCC------CcEEE-----Ee-------ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCC
Q psy15549 215 TAIMWDVHK------GKNLG-----IL-------TEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSK 276 (621)
Q Consensus 215 ~i~vwd~~~------~~~~~-----~~-------~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 276 (621)
.|++||+.+ ++.+. .+ ..|...|.+++|+|++ +|++++.||.|++||+++++.+..+...
T Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~- 226 (397)
T 1sq9_A 149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ- 226 (397)
T ss_dssp CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC-
T ss_pred cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc-
Confidence 999999998 66555 66 4488899999999999 9999999999999999998877766420
Q ss_pred CCCCCccccccccccccccCCc---ccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcc
Q psy15549 277 LPVDSSHELFDKVVPLFHDDTM---KSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQ 353 (621)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (621)
..+ ...|.+++|+|++++|++++
T Consensus 227 -------------------~~h~~~~~~i~~i~~~~~~~~l~~~~----------------------------------- 252 (397)
T 1sq9_A 227 -------------------HSMINNSNSIRSVKFSPQGSLLAIAH----------------------------------- 252 (397)
T ss_dssp -------------------C---CCCCCEEEEEECSSTTEEEEEE-----------------------------------
T ss_pred -------------------ccccccCCccceEEECCCCCEEEEEe-----------------------------------
Confidence 012 45678899999888777655
Q ss_pred cceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcC---CcEEEEeCCCCceeEEEecc-------------cccceEE
Q psy15549 354 YYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATE---NNILLYDTQHASPFAFIANI-------------HYTKLTD 417 (621)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~-------------h~~~v~~ 417 (621)
.| +.|++||+.+++.+..+. + |...|.+
T Consensus 253 -----------------------------------~d~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~ 296 (397)
T 1sq9_A 253 -----------------------------------DSNSFGCITLYETEFGERIGSLS-VPTHSSQASLGEFAHSSWVMS 296 (397)
T ss_dssp -----------------------------------EETTEEEEEEEETTTCCEEEEEC-BC--------CCBSBSSCEEE
T ss_pred -----------------------------------cCCCCceEEEEECCCCcccceec-cCcccccccccccccCCcEEE
Confidence 56 789999999988888774 5 8899999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccC------CC---------------CCcccccCCCCCC----------
Q psy15549 418 ITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYV------PP---------------SGEESKENDPTKG---------- 466 (621)
Q Consensus 418 ~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~------~~---------------~~~~~~~~~~~~~---------- 466 (621)
++|+|++++|++++.||.|++||+.+++....+. .+ ...+..+.+++++
T Consensus 297 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 297 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 376 (397)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence 9999999999999999999999999999888888 66 7889999999998
Q ss_pred CCcccCCCcccHHHhcccC
Q psy15549 467 EPVRSEDKPRSAEQAKGEG 485 (621)
Q Consensus 467 ~~~~s~~~~~~~~~w~~~~ 485 (621)
..+++++.|+.+++|++..
T Consensus 377 ~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp CEEEEEETTTEEEEEEEEC
T ss_pred ceEEEecCCCcEEEEEcCC
Confidence 6899999999999998754
No 77
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.4e-36 Score=326.61 Aligned_cols=293 Identities=17% Similarity=0.269 Sum_probs=239.9
Q ss_pred eccccccccCcEEEEEEccCC-CEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCC
Q psy15549 73 FASDLSRHQKAVNVVRFSPNG-ELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE 150 (621)
Q Consensus 73 ~~~~~~~h~~~V~~l~~spdg-~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~d 150 (621)
....+.+|.+.|++++|+|++ .+|++|+ |+.|++|++....... ......+.+|...|.+++|+|++++|++|+.|
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--CEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--ccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 344588999999999999865 7899988 8899999997653211 13345678999999999999999999999999
Q ss_pred CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q psy15549 151 STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGIL 230 (621)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~ 230 (621)
|+|+|||+.++... ..+.+|...|.+++|+|++++|++|+.|++|++||+.........
T Consensus 452 g~v~vwd~~~~~~~---------------------~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 510 (694)
T 3dm0_A 452 GELRLWDLAAGVST---------------------RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS 510 (694)
T ss_dssp SEEEEEETTTTEEE---------------------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred CcEEEEECCCCcce---------------------eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence 99999999887643 667899999999999999999999999999999998655433332
Q ss_pred ---ccCCcceEEEEEcCCC--CEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeee
Q psy15549 231 ---TEHKKFVQGVAWDPKN--QYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRL 305 (621)
Q Consensus 231 ---~~~~~~v~~l~~sp~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 305 (621)
.+|...|.+++|+|++ ..|++++.|+.|++||+++++....+. .|...|.++
T Consensus 511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-----------------------~h~~~v~~v 567 (694)
T 3dm0_A 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-----------------------GHTGYVSTV 567 (694)
T ss_dssp SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-----------------------CCSSCEEEE
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-----------------------CCCCCEEEE
Confidence 4688899999999987 689999999999999999887766654 344567899
Q ss_pred eecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEE
Q psy15549 306 TFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVI 385 (621)
Q Consensus 306 ~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 385 (621)
+|+|+|++|++++
T Consensus 568 ~~spdg~~l~sg~------------------------------------------------------------------- 580 (694)
T 3dm0_A 568 AVSPDGSLCASGG------------------------------------------------------------------- 580 (694)
T ss_dssp EECTTSSEEEEEE-------------------------------------------------------------------
T ss_pred EEeCCCCEEEEEe-------------------------------------------------------------------
Confidence 9999888777655
Q ss_pred EEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCC----------
Q psy15549 386 AVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSG---------- 455 (621)
Q Consensus 386 ~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~---------- 455 (621)
.|+.|++||+.+++.+..+. +...|.+++|+|++.+|++++ |+.|++||+.++.+...+..+..
T Consensus 581 ---~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (694)
T 3dm0_A 581 ---KDGVVLLWDLAEGKKLYSLE--ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSG 654 (694)
T ss_dssp ---TTSBCEEEETTTTEEEECCB--CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------
T ss_pred ---CCCeEEEEECCCCceEEEec--CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccc
Confidence 68889999999888777663 456899999999998887765 56699999999877665543211
Q ss_pred ---------cccccCCCCCCCCcccCCCcccHHHhccc
Q psy15549 456 ---------EESKENDPTKGEPVRSEDKPRSAEQAKGE 484 (621)
Q Consensus 456 ---------~~~~~~~~~~~~~~~s~~~~~~~~~w~~~ 484 (621)
.+..+.|+++|..+++++.|+.|++|++.
T Consensus 655 ~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 655 PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 13456899999999999999999999864
No 78
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=304.04 Aligned_cols=276 Identities=13% Similarity=0.199 Sum_probs=203.1
Q ss_pred cCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccc----cccceeecccccccc-----
Q psy15549 11 HNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERES----GIANVEFASDLSRHQ----- 81 (621)
Q Consensus 11 ~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~----~~~~~~~~~~~~~h~----- 81 (621)
.|.+.|++|+|+|+++ +||+|+.||.|+ ||++..+.. ....+.+...+.+|.
T Consensus 26 ~~~~~V~~v~~s~~g~-----~la~g~~dg~v~--------------iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 86 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-----LLATGDKGGRVV--------------IFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDY 86 (447)
T ss_dssp CGGGSEEEEEECSSSS-----EEEEEETTSEEE--------------EEEECC-----CCCCCCEEEEEEEECCCCEEEG
T ss_pred cccCcEEEEEECCCCC-----EEEEEcCCCeEE--------------EEEecCCCCCCcccccceeEecccccccccccc
Confidence 4578999999999998 999999999999 888876542 112344556788998
Q ss_pred -------CcEEEEEEccCC--CEEEEEc-CCceEEEEeccCccccc------------------cc--------------
Q psy15549 82 -------KAVNVVRFSPNG--ELLASGD-DVGKEIWYLTERESGIA------------------NV-------------- 119 (621)
Q Consensus 82 -------~~V~~l~~spdg--~~las~~-d~~v~iw~~~~~~~~~~------------------~~-------------- 119 (621)
..|.+++|+|++ .+|++++ |+.|++|++........ .+
T Consensus 87 ~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (447)
T 3dw8_B 87 LKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA 166 (447)
T ss_dssp GGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE
T ss_pred cccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec
Confidence 889999999998 7788777 99999999976421000 00
Q ss_pred eec-ccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCC-CCCCCCCCcccccccccceeeeeeecCCCCCeEE
Q psy15549 120 EFA-SDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQD-LPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYD 197 (621)
Q Consensus 120 ~~~-~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 197 (621)
... ....+|...|.+++|+|++++|++| .|+.|++||+.+... ...+.. ....+.+|...|++
T Consensus 167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~v~~ 231 (447)
T 3dw8_B 167 SPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDI--------------KPANMEELTEVITA 231 (447)
T ss_dssp EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEEC--------------CCSSGGGCCCCEEE
T ss_pred cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeec--------------ccccccccCcceEE
Confidence 001 1136799999999999999999998 799999999984332 100000 00135689999999
Q ss_pred EEECCCC-CEEEEEeCCCeEEEEECCCCcE----EEEeccCCc------------ceEEEEEcCCCCEEEEEeCCCcEEE
Q psy15549 198 ISWSPTS-THLISGSVDNTAIMWDVHKGKN----LGILTEHKK------------FVQGVAWDPKNQYVATLSSDRSLRT 260 (621)
Q Consensus 198 i~~spd~-~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~------------~v~~l~~sp~~~~l~s~~~dg~i~i 260 (621)
++|+|++ ++|++|+.||.|++||+++++. +..+..|.. .|.+++|+|++++|++++. +.|++
T Consensus 232 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~i 310 (447)
T 3dw8_B 232 AEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKV 310 (447)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEE
T ss_pred EEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEE
Confidence 9999998 9999999999999999999886 678888876 8999999999999999998 99999
Q ss_pred EEccC-ceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeee
Q psy15549 261 YSIQS-KKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVT 334 (621)
Q Consensus 261 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~ 334 (621)
||+++ ++.+..+..+....... ...+.. ..-..+..++|+|++++|++++ .|+.+++|++.
T Consensus 311 wd~~~~~~~~~~~~~~~~~~~~l-------~~~~~~-~~i~~~~~~~~s~~~~~l~s~s-----~dg~v~iwd~~ 372 (447)
T 3dw8_B 311 WDLNMENRPVETYQVHEYLRSKL-------CSLYEN-DCIFDKFECCWNGSDSVVMTGS-----YNNFFRMFDRN 372 (447)
T ss_dssp EETTCCSSCSCCEESCGGGTTTH-------HHHHHT-SGGGCCCCEEECTTSSEEEEEC-----STTEEEEEETT
T ss_pred EeCCCCccccceeeccccccccc-------cccccc-cccccceEEEECCCCCEEEEec-----cCCEEEEEEcC
Confidence 99987 77666665432111000 000000 0001123589999999999888 78888888865
No 79
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.3e-35 Score=298.66 Aligned_cols=308 Identities=14% Similarity=0.168 Sum_probs=234.9
Q ss_pred cccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEE
Q psy15549 77 LSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIV 155 (621)
Q Consensus 77 ~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~v 155 (621)
+..|.+.|.+++|+|++++|++++ ++.|++|++..+. +.....+.+|...|.+++|+|++++|++++.||.|++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~v 78 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 78 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-----EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEE
Confidence 455889999999999999999996 8899999998762 1367778899999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcE----EEEec
Q psy15549 156 WKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKN----LGILT 231 (621)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~----~~~~~ 231 (621)
||+.+++.. ....+..|...|.+++|+|++++|++++.|+.|++||+..+.. .....
T Consensus 79 wd~~~~~~~-------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 139 (372)
T 1k8k_C 79 WTLKGRTWK-------------------PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK 139 (372)
T ss_dssp EEEETTEEE-------------------EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT
T ss_pred EECCCCeee-------------------eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec
Confidence 999877532 1234467899999999999999999999999999999998762 33336
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCC
Q psy15549 232 EHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDG 311 (621)
Q Consensus 232 ~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg 311 (621)
.|...|.+++|+|++++|++++.||.|++||++............ .... ......+.....+...|.+++|+|++
T Consensus 140 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~ 214 (372)
T 1k8k_C 140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP----WGSK-MPFGELMFESSSSCGWVHGVCFSANG 214 (372)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBT----TBSC-CCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccc----cccc-cchhhheEecCCCCCeEEEEEECCCC
Confidence 788999999999999999999999999999976432110000000 0000 00000000111223344555555544
Q ss_pred CeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCC
Q psy15549 312 QLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATEN 391 (621)
Q Consensus 312 ~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 391 (621)
+ ++++++.|+
T Consensus 215 ~----------------------------------------------------------------------~l~~~~~d~ 224 (372)
T 1k8k_C 215 S----------------------------------------------------------------------RVAWVSHDS 224 (372)
T ss_dssp S----------------------------------------------------------------------EEEEEETTT
T ss_pred C----------------------------------------------------------------------EEEEEeCCC
Confidence 4 455566889
Q ss_pred cEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecC--Cc------------------------
Q psy15549 392 NILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGD--NE------------------------ 445 (621)
Q Consensus 392 ~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~--~~------------------------ 445 (621)
.|++||+.+++.+..+. .|...|.+++|+|++++|+++ .||.|++|++.+ +.
T Consensus 225 ~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (372)
T 1k8k_C 225 TVCLADADKKMAVATLA-SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF 302 (372)
T ss_dssp EEEEEEGGGTTEEEEEE-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHH
T ss_pred EEEEEECCCCceeEEEc-cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhh
Confidence 99999999999888885 588899999999999988887 999999999988 42
Q ss_pred --------CC------ccc-CCCCCcccccC-CCCCC---CCcccCCCcccHHHhcccC
Q psy15549 446 --------IG------IPY-VPPSGEESKEN-DPTKG---EPVRSEDKPRSAEQAKGEG 485 (621)
Q Consensus 446 --------~~------~~~-~~~~~~~~~~~-~~~~~---~~~~s~~~~~~~~~w~~~~ 485 (621)
.. ..+ ..|...+..+. ++++| ..+++++.|+.+++|++..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 303 QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp HHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred hhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 10 222 36778888886 44777 8999999999999999653
No 80
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.7e-35 Score=288.70 Aligned_cols=286 Identities=12% Similarity=0.110 Sum_probs=230.8
Q ss_pred eeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 7 EISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 7 ~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
++...|.+.|++++|+|+++ +|++|+.||.|+ ||++..+..... ...+.+|...|.+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~-----~l~~~~~d~~v~--------------iw~~~~~~~~~~----~~~~~~~~~~v~~ 61 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKS-----LLLITSWDGSLT--------------VYKFDIQAKNVD----LLQSLRYKHPLLC 61 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGT-----EEEEEETTSEEE--------------EEEEETTTTEEE----EEEEEECSSCEEE
T ss_pred ecccCCCCcEEEEEEcCCCC-----EEEEEcCCCeEE--------------EEEeCCCCcccc----ceeeeecCCceEE
Confidence 45558999999999999998 999999999999 998887652111 2235589999999
Q ss_pred EEEccCCC-EEEEEc-CCceEEEEe-ccCccccccceecccccc--cCCCeEEEEECCCCCEEEEEeCCCcEEEEEccC-
Q psy15549 87 VRFSPNGE-LLASGD-DVGKEIWYL-TERESGIANVEFASDLSR--HQKAVNVVRFSPNGELLASGDDESTIIVWKQKT- 160 (621)
Q Consensus 87 l~~spdg~-~las~~-d~~v~iw~~-~~~~~~~~~~~~~~~~~~--h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~- 160 (621)
++|+|+++ +|++++ ++.|++|++ ..+. ...+.+ |...|.+++|+| +++|++++.|+.|++||+.+
T Consensus 62 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--------~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~ 132 (342)
T 1yfq_A 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPS--------FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNY 132 (342)
T ss_dssp EEEEESSSEEEEEEETTSCEEEECSSSSSS--------EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHH
T ss_pred EEECCCCCcEEEEEcCCCeEEEEEeccCCc--------eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccc
Confidence 99999999 899888 889999999 7652 255677 999999999999 99999999999999999987
Q ss_pred --------CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-Cc--EEEE
Q psy15549 161 --------DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHK-GK--NLGI 229 (621)
Q Consensus 161 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~-~~--~~~~ 229 (621)
.+.+.. + .|...|.+++|+|++ |++++.|+.|++||+++ +. ....
T Consensus 133 ~~~~~~~~~~~~~~---------------------~-~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~ 188 (342)
T 1yfq_A 133 GDGVIAVKNLNSNN---------------------T-KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE 188 (342)
T ss_dssp TTBCEEEEESCSSS---------------------S-SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEE
T ss_pred ccccccccCCeeeE---------------------E-eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceee
Confidence 554432 2 388899999999987 99999999999999988 54 3334
Q ss_pred eccCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEccCc------eeeeecccCCCCCCCccccccccccccccCCcccce
Q psy15549 230 LTEHKKFVQGVAWDP-KNQYVATLSSDRSLRTYSIQSK------KVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFF 302 (621)
Q Consensus 230 ~~~~~~~v~~l~~sp-~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 302 (621)
...|...|.+++|+| ++++|++++.||.|++|+++.. +....+..+.... ....+...|
T Consensus 189 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~i 254 (342)
T 1yfq_A 189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL--------------KDTNLAYPV 254 (342)
T ss_dssp ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT--------------TCCSSCCCE
T ss_pred ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc--------------cccccceeE
Confidence 456888999999999 9999999999999999999876 4443333221100 011233467
Q ss_pred eeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCc
Q psy15549 303 RRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYR 382 (621)
Q Consensus 303 ~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (621)
.+++|+|++++|+++
T Consensus 255 ~~~~~s~~~~~l~~~----------------------------------------------------------------- 269 (342)
T 1yfq_A 255 NSIEFSPRHKFLYTA----------------------------------------------------------------- 269 (342)
T ss_dssp EEEEECTTTCCEEEE-----------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEe-----------------------------------------------------------------
Confidence 777787777666554
Q ss_pred EEEEEEcCCcEEEEeCCCCceeEEEeccc-ccceEEEEEcCCCCeEEEEeCCCc
Q psy15549 383 IVIAVATENNILLYDTQHASPFAFIANIH-YTKLTDITWSSDGKVLIASSTDGY 435 (621)
Q Consensus 383 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~spdg~~l~s~s~dg~ 435 (621)
+.||.|++||+.+++.+..+. +| ...|++++ |+|++|++++.||+
T Consensus 270 -----~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 270 -----GSDGIISCWNLQTRKKIKNFA-KFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp -----ETTSCEEEEETTTTEEEEECC-CCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred -----cCCceEEEEcCccHhHhhhhh-cccCCCceEec--CCCCeEEEEecCCc
Confidence 478999999999999888874 46 99999999 99999999999998
No 81
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=284.39 Aligned_cols=281 Identities=21% Similarity=0.361 Sum_probs=232.1
Q ss_pred eEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCCE
Q psy15549 16 VLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGEL 95 (621)
Q Consensus 16 v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 95 (621)
+.+|+||+++ +||+|. |+.|+ |||+.+++.... ..+.+|...|++++|+|++++
T Consensus 28 ~~~l~WS~~~------~lAvg~-D~tV~--------------iWd~~tg~~~~~-----~~~~~~~~~V~~v~~~~~~~~ 81 (318)
T 4ggc_A 28 LNLVDWSSGN------VLAVAL-DNSVY--------------LWSASSGDILQL-----LQMEQPGEYISSVAWIKEGNY 81 (318)
T ss_dssp CBCEEECTTS------EEEEEE-TTEEE--------------EEETTTCCEEEE-----EECCSTTCCEEEEEECTTSSE
T ss_pred ceEEEECCCC------EEEEEe-CCEEE--------------EEECCCCCEEEE-----EEecCCCCeEEEEEECCCCCE
Confidence 5789999986 788875 89999 999887764332 235678889999999999999
Q ss_pred EEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCccc
Q psy15549 96 LASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDE 174 (621)
Q Consensus 96 las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (621)
|++|+ |+.|++|++..+ +.+..+.+|...+.++.+ ++.+|++++.++.+++|+.......
T Consensus 82 l~sgs~Dg~v~iw~~~~~-------~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~---------- 142 (318)
T 4ggc_A 82 LAVGTSSAEVQLWDVQQQ-------KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHH---------- 142 (318)
T ss_dssp EEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE----------
T ss_pred EEEEECCCcEEEeecCCc-------eeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCcee----------
Confidence 99998 888999999987 677788899998877655 5679999999999999998776542
Q ss_pred ccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcE----EEEeccCCcceEEEEEcCCCCEE-
Q psy15549 175 ENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKN----LGILTEHKKFVQGVAWDPKNQYV- 249 (621)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~l- 249 (621)
...+.+|...+.++.+++++++|++++.|+.|++||+++++. ......+.+.|.+++++|++..+
T Consensus 143 ----------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 212 (318)
T 4ggc_A 143 ----------VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 212 (318)
T ss_dssp ----------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEE
T ss_pred ----------EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEE
Confidence 466789999999999999999999999999999999987653 34556688899999999977543
Q ss_pred --EEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCC
Q psy15549 250 --ATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDST 327 (621)
Q Consensus 250 --~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~ 327 (621)
++++.++.|++||........... +...+..+.|+|++..+++++
T Consensus 213 ~~~~~~~~~~i~lwd~~~~~~~~~~~------------------------~~~~v~~~~~~~~~~~~~~~s--------- 259 (318)
T 4ggc_A 213 ATGGGTSDRHIRIWNVCSGACLSAVD------------------------AHSQVCSILWSPHYKELISGH--------- 259 (318)
T ss_dssp EEEECTTTCEEEEEETTTCCEEEEEE------------------------CSSCEEEEEEETTTTEEEEEE---------
T ss_pred EEEecCCCCEEEEEeccccccccccc------------------------ceeeeeeeeecccccceEEEE---------
Confidence 356678999999998876654432 223457788888887776544
Q ss_pred CcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEE
Q psy15549 328 RKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFI 407 (621)
Q Consensus 328 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 407 (621)
++.|+.|++||+.+++++..+
T Consensus 260 -----------------------------------------------------------g~~d~~i~iwd~~~~~~~~~l 280 (318)
T 4ggc_A 260 -----------------------------------------------------------GFAQNQLVIWKYPTMAKVAEL 280 (318)
T ss_dssp -----------------------------------------------------------CTTTCCEEEEETTTCCEEEEE
T ss_pred -----------------------------------------------------------EcCCCEEEEEECCCCcEEEEE
Confidence 226899999999999999988
Q ss_pred ecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCC
Q psy15549 408 ANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDN 444 (621)
Q Consensus 408 ~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~ 444 (621)
.+|.+.|++++|+|||++||||+.||+|+|||+.+.
T Consensus 281 -~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 281 -KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp -CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred -cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 579999999999999999999999999999998754
No 82
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.2e-35 Score=303.35 Aligned_cols=319 Identities=18% Similarity=0.240 Sum_probs=268.5
Q ss_pred cccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcE
Q psy15549 75 SDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTI 153 (621)
Q Consensus 75 ~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i 153 (621)
..+.+|.+.|.. +++++|++|++|+ |+.|++|++..+ .....+.+|...|.+++|+ +++|++|+.||+|
T Consensus 112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i 181 (445)
T 2ovr_B 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG-------KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTL 181 (445)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC-------CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCC-------cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeE
Confidence 457899887543 3556789999988 889999999877 6677788999999999997 5699999999999
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC
Q psy15549 154 IVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEH 233 (621)
Q Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 233 (621)
++||+.+++.+ ..+.+|...|.++.|+ ++.|++|+.||.|++||+.+++.+..+.+|
T Consensus 182 ~vwd~~~~~~~---------------------~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 238 (445)
T 2ovr_B 182 KVWNAETGECI---------------------HTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH 238 (445)
T ss_dssp EEEETTTTEEE---------------------EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred EEEECCcCcEE---------------------EEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 99999888643 6677899999999995 568999999999999999999999999999
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCe
Q psy15549 234 KKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQL 313 (621)
Q Consensus 234 ~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~ 313 (621)
...|.+++| ++++|++++.||.|++||+++++.+..+.. +...|.+++| ++.+
T Consensus 239 ~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------------------~~~~v~~~~~--~~~~ 291 (445)
T 2ovr_B 239 VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG-----------------------HTNRVYSLQF--DGIH 291 (445)
T ss_dssp SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC-----------------------CSSCEEEEEE--CSSE
T ss_pred cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC-----------------------CCCceEEEEE--CCCE
Confidence 999999999 688999999999999999999988777643 3345688888 8899
Q ss_pred EEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcE
Q psy15549 314 LIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNI 393 (621)
Q Consensus 314 l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 393 (621)
+++++ .|+.+++|++... .....+.++...+.++.+. ++.+++++.||.|
T Consensus 292 l~~~~-----~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~------------------~~~l~~~~~dg~i 341 (445)
T 2ovr_B 292 VVSGS-----LDTSIRVWDVETG-------NCIHTLTGHQSLTSGMELK------------------DNILVSGNADSTV 341 (445)
T ss_dssp EEEEE-----TTSCEEEEETTTC-------CEEEEECCCCSCEEEEEEE------------------TTEEEEEETTSCE
T ss_pred EEEEe-----CCCeEEEEECCCC-------CEEEEEcCCcccEEEEEEe------------------CCEEEEEeCCCeE
Confidence 99998 8999999997542 2233445555555555543 3789999999999
Q ss_pred EEEeCCCCceeEEEec--ccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCccc-----CCCCCcccccCCCCCC
Q psy15549 394 LLYDTQHASPFAFIAN--IHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPY-----VPPSGEESKENDPTKG 466 (621)
Q Consensus 394 ~iwd~~~~~~~~~~~~--~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 466 (621)
++||+.+++.+..+.. .|...|++++|+ +++|++|+.||.|++||+.+++....+ ..+...+..+.+++++
T Consensus 342 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 419 (445)
T 2ovr_B 342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK 419 (445)
T ss_dssp EEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred EEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCE
Confidence 9999999998888743 388899999995 679999999999999999999988777 3567778889999999
Q ss_pred CCcccCCCccc----HHHhcccC
Q psy15549 467 EPVRSEDKPRS----AEQAKGEG 485 (621)
Q Consensus 467 ~~~~s~~~~~~----~~~w~~~~ 485 (621)
..+++++.||. +.+|+...
T Consensus 420 ~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 420 LVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEEcccCCCCccEEEEEECCC
Confidence 99999999987 77787554
No 83
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-35 Score=286.43 Aligned_cols=287 Identities=20% Similarity=0.209 Sum_probs=245.0
Q ss_pred eeccccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCC
Q psy15549 72 EFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE 150 (621)
Q Consensus 72 ~~~~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~d 150 (621)
++...+.+|.+.|.+++| |++.+|++++ |+.|++|++... .....+..|...|.+++|+|++++|++++.|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 80 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ-------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKD 80 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS-------EEEEEEEECSSCEEEEEEETTTTEEEEEETT
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC-------EEEEEeecCCccEEEEEECCCCCEEEEecCC
Confidence 345678999999999999 9999999988 888999999776 5667778899999999999999999999999
Q ss_pred CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q psy15549 151 STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGIL 230 (621)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~ 230 (621)
|.|++|++........ ...+.+|...|.+++| ++++|++++.||.|++|| .++.+..+
T Consensus 81 g~i~~~~~~~~~~~~~------------------~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~ 138 (313)
T 3odt_A 81 TMINGVPLFATSGEDP------------------LYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL 138 (313)
T ss_dssp SCEEEEETTCCTTSCC-------------------CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE
T ss_pred CeEEEEEeeecCCCCc------------------ccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec
Confidence 9999999987653322 2566789999999999 577999999999999999 67888888
Q ss_pred ccCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecC
Q psy15549 231 TEHKKFVQGVAWDP-KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSP 309 (621)
Q Consensus 231 ~~~~~~v~~l~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 309 (621)
..|...+.+++|+| ++++|++++.||.|++||. .+....+.. .+...+.+++|+|
T Consensus 139 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~----------------------~~~~~i~~~~~~~ 194 (313)
T 3odt_A 139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSG----------------------IHNDVVRHLAVVD 194 (313)
T ss_dssp ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECS----------------------SCSSCEEEEEEEE
T ss_pred ccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEec----------------------cCcccEEEEEEcC
Confidence 89999999999998 8999999999999999993 333333321 1344567777777
Q ss_pred CCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEc
Q psy15549 310 DGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVAT 389 (621)
Q Consensus 310 dg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (621)
++. ++ +++.
T Consensus 195 ~~~-~~----------------------------------------------------------------------~~~~ 203 (313)
T 3odt_A 195 DGH-FI----------------------------------------------------------------------SCSN 203 (313)
T ss_dssp TTE-EE----------------------------------------------------------------------EEET
T ss_pred CCe-EE----------------------------------------------------------------------EccC
Confidence 765 43 3457
Q ss_pred CCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCCc
Q psy15549 390 ENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEPV 469 (621)
Q Consensus 390 dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (621)
|+.|++||+.+++.+..+. +|...|++++|+|+| .|++++.||.|++||+.+++....+..+...+..+.+++++. +
T Consensus 204 dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 280 (313)
T 3odt_A 204 DGLIKLVDMHTGDVLRTYE-GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-I 280 (313)
T ss_dssp TSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-E
T ss_pred CCeEEEEECCchhhhhhhh-cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-E
Confidence 8999999999999888884 699999999999999 699999999999999999999999999998999999999998 6
Q ss_pred ccCCCcccHHHhcccCc
Q psy15549 470 RSEDKPRSAEQAKGEGK 486 (621)
Q Consensus 470 ~s~~~~~~~~~w~~~~~ 486 (621)
++++.|+.+++|++...
T Consensus 281 ~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 281 IVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp EEEETTSCEEEEESCGG
T ss_pred EEEeCCCcEEEEeCCCC
Confidence 67889999999997654
No 84
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.5e-35 Score=290.57 Aligned_cols=253 Identities=17% Similarity=0.303 Sum_probs=199.8
Q ss_pred ccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECC--CCCEEEEEeCCCc
Q psy15549 76 DLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP--NGELLASGDDEST 152 (621)
Q Consensus 76 ~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp--~g~~l~s~s~dg~ 152 (621)
.+.+|.+.|++++|+|+|++||+|+ |+.|+||++..+.. .....+.+|...|++++|++ ++++|++|+.|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-----~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~ 82 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-----ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK 82 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-----EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-----EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence 3678999999999999999999998 88899999986521 34567889999999999986 4899999999999
Q ss_pred EEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCCcE---E
Q psy15549 153 IIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT--STHLISGSVDNTAIMWDVHKGKN---L 227 (621)
Q Consensus 153 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd--~~~l~s~~~dg~i~vwd~~~~~~---~ 227 (621)
|++||+.++... ....+.+|...|.+++|+|+ +.+|++|+.|+.|++||+..+.. .
T Consensus 83 v~iWd~~~~~~~-------------------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 83 VIIWREENGTWE-------------------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 143 (316)
T ss_dssp EEEECCSSSCCC-------------------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC
T ss_pred EEEEECCCCcce-------------------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee
Confidence 999999876421 23556789999999999997 78999999999999999987632 3
Q ss_pred EEeccCCcceEEEEEcCC-----------------CCEEEEEeCCCcEEEEEccCce---eeeecccCCCCCCCcccccc
Q psy15549 228 GILTEHKKFVQGVAWDPK-----------------NQYVATLSSDRSLRTYSIQSKK---VISRACRSKLPVDSSHELFD 287 (621)
Q Consensus 228 ~~~~~~~~~v~~l~~sp~-----------------~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~ 287 (621)
..+.+|...|.+++|+|+ +++|++|+.|+.|++||++... .+..+
T Consensus 144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l--------------- 208 (316)
T 3bg1_A 144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL--------------- 208 (316)
T ss_dssp CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC---------------
T ss_pred eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec---------------
Confidence 455789999999999997 4789999999999999997542 33322
Q ss_pred ccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeee
Q psy15549 288 KVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFE 367 (621)
Q Consensus 288 ~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (621)
..|...|.+++|+|++..
T Consensus 209 --------~~h~~~V~~v~~sp~~~~------------------------------------------------------ 226 (316)
T 3bg1_A 209 --------EAHSDWVRDVAWAPSIGL------------------------------------------------------ 226 (316)
T ss_dssp --------BCCSSCEEEEECCCCSSC------------------------------------------------------
T ss_pred --------ccCCCceEEEEecCCCCC------------------------------------------------------
Confidence 234556788889887611
Q ss_pred cCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCC---c-eeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEec
Q psy15549 368 LKPSDDKPLFKLPYRIVIAVATENNILLYDTQHA---S-PFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFG 442 (621)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~-~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~ 442 (621)
++..|++++.|++|++||+.+. . ....+ ..|...|.+++|+|+|++||+++.||+|++|+..
T Consensus 227 ------------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 227 ------------PTSTIASCSQDGRVFIWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ------------SCCEEEEEETTCEEEEEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ------------CCceEEEEcCCCeEEEEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 1144666678899999988763 1 12223 3588899999999999999999999999999986
No 85
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3e-35 Score=305.49 Aligned_cols=317 Identities=18% Similarity=0.239 Sum_probs=260.7
Q ss_pred cccccccCcE-EEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCc
Q psy15549 75 SDLSRHQKAV-NVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDEST 152 (621)
Q Consensus 75 ~~~~~h~~~V-~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~ 152 (621)
..+.+|...| .++.| ++.+|++|+ |+.|++|++..+ .....+.+|...|.+++|+|++ +|++|+.||+
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~-------~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~ 184 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK-------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRT 184 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECSTT-EEEEEETTSC
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC-------cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCC
Confidence 3578898875 56555 577999988 889999999877 6777888999999999999988 9999999999
Q ss_pred EEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcE----
Q psy15549 153 IIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWS--PTSTHLISGSVDNTAIMWDVHKGKN---- 226 (621)
Q Consensus 153 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s--pd~~~l~s~~~dg~i~vwd~~~~~~---- 226 (621)
|++||+.+++.+ ..+.+|...|.+++|+ +++.+|++|+.||.|++||+.++..
T Consensus 185 i~vwd~~~~~~~---------------------~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 185 VRVWDIKKGCCT---------------------HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp EEEEETTTTEEE---------------------EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred EEEEECCCCcEE---------------------EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence 999999988643 6678899999999998 5788999999999999999987652
Q ss_pred -------------------EEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCcccccc
Q psy15549 227 -------------------LGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFD 287 (621)
Q Consensus 227 -------------------~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (621)
+..+.+|...|.++ ++++++|++++.||.|++||+++++.+..+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~------------- 308 (464)
T 3v7d_B 244 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG------------- 308 (464)
T ss_dssp ---CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECC-------------
T ss_pred cccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-------------
Confidence 45667888888776 57799999999999999999999988777643
Q ss_pred ccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeee
Q psy15549 288 KVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFE 367 (621)
Q Consensus 288 ~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (621)
+...|.+++|+|+++++++++ .|+.+++|++... .....+.+|...+.++.+++
T Consensus 309 ----------~~~~v~~~~~~~~~~~l~sg~-----~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~---- 362 (464)
T 3v7d_B 309 ----------HTDRIYSTIYDHERKRCISAS-----MDTTIRIWDLENG-------ELMYTLQGHTALVGLLRLSD---- 362 (464)
T ss_dssp ----------CSSCEEEEEEETTTTEEEEEE-----TTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECS----
T ss_pred ----------CCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCC-------cEEEEEeCCCCcEEEEEEcC----
Confidence 345679999999999999999 8999999997532 23345567778888887765
Q ss_pred cCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCC
Q psy15549 368 LKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIG 447 (621)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~ 447 (621)
.++++++.||.|++||+.++....... |...+..++|++++++|++++ ||.|++||+.++++.
T Consensus 363 --------------~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 363 --------------KFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp --------------SEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred --------------CEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence 789999999999999999988766653 667888999999999999998 899999999999988
Q ss_pred cc-cCCCCCcccccCCCCCCCCcccCCCcccHHHh
Q psy15549 448 IP-YVPPSGEESKENDPTKGEPVRSEDKPRSAEQA 481 (621)
Q Consensus 448 ~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~w 481 (621)
.. +..+...+..+.++ ....+++.+.++.+.+|
T Consensus 426 ~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 426 HANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp ESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred ehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 75 56677778888875 22334444455544443
No 86
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=297.12 Aligned_cols=290 Identities=12% Similarity=0.165 Sum_probs=233.5
Q ss_pred ccccccCcEEEEEEccCCCEEE-EEc----CCceEEEEeccCccccccceecccccccCCCeEEEEECCC---CCEEEEE
Q psy15549 76 DLSRHQKAVNVVRFSPNGELLA-SGD----DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN---GELLASG 147 (621)
Q Consensus 76 ~~~~h~~~V~~l~~spdg~~la-s~~----d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~---g~~l~s~ 147 (621)
.+.+|...|.+++|+|++..++ +++ |+.|++|++..+. .......+|...|.+++|+|+ +++|++|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD------LKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS------EEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc------ccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 3578999999999999996555 553 6789999998763 112223378999999999998 6999999
Q ss_pred eCCCcEEEEEccCCC-CCCCCCCCCcccccccccceeeeeeecCCCCCeEEEE------ECCCCCEEEEEeCCCeEEEEE
Q psy15549 148 DDESTIIVWKQKTDQ-DLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDIS------WSPTSTHLISGSVDNTAIMWD 220 (621)
Q Consensus 148 s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~------~spd~~~l~s~~~dg~i~vwd 220 (621)
+.||.|++||+.++. .+ ..+.+|...|.+++ |+|++++|++++.||.|++||
T Consensus 87 ~~dg~i~iwd~~~~~~~~---------------------~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd 145 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEMPV---------------------YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWD 145 (357)
T ss_dssp ETTSCEEEECTTSCSSCS---------------------EEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred cCCCeEEEEeCCCCCccE---------------------EEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence 999999999999876 32 56779999999995 578999999999999999999
Q ss_pred CCCCc-EEEEeccCCc----ceEEEE----EcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCcccccccccc
Q psy15549 221 VHKGK-NLGILTEHKK----FVQGVA----WDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVP 291 (621)
Q Consensus 221 ~~~~~-~~~~~~~~~~----~v~~l~----~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (621)
+.++. .+..+..|.+ .+.+++ |+|++++|++++.||.|++||+++++.....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------------- 206 (357)
T 3i2n_A 146 PRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET------------------- 206 (357)
T ss_dssp TTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE-------------------
T ss_pred CCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec-------------------
Confidence 99887 6777766554 788888 7889999999999999999999988764432
Q ss_pred ccccCCcccceeeeeecC---CCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeec
Q psy15549 292 LFHDDTMKSFFRRLTFSP---DGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFEL 368 (621)
Q Consensus 292 ~~~~~~~~~~i~~~~~sp---dg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (621)
.+...|.+++|+| ++.+|++++
T Consensus 207 -----~~~~~v~~~~~~~~~~~~~~l~~~~-------------------------------------------------- 231 (357)
T 3i2n_A 207 -----NIKNGVCSLEFDRKDISMNKLVATS-------------------------------------------------- 231 (357)
T ss_dssp -----ECSSCEEEEEESCSSSSCCEEEEEE--------------------------------------------------
T ss_pred -----CCCCceEEEEcCCCCCCCCEEEEEC--------------------------------------------------
Confidence 2344578899998 676666554
Q ss_pred CCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEe----cccccceEEEEEcCCCC-eEEEEeCCCcEEEEEecC
Q psy15549 369 KPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIA----NIHYTKLTDITWSSDGK-VLIASSTDGYCSIISFGD 443 (621)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~h~~~v~~~~~spdg~-~l~s~s~dg~i~iw~~~~ 443 (621)
.||.|++||+.+++.+..+. .+|...|++++|+|+++ +|++++.||.|++|++..
T Consensus 232 --------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 232 --------------------LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp --------------------STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred --------------------CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 56677777776655443332 36899999999999999 899999999999999986
Q ss_pred Cc-------------------CCcccCCCCCcccccCCCCCCCCcc-cCCCcccHHHhcccCc
Q psy15549 444 NE-------------------IGIPYVPPSGEESKENDPTKGEPVR-SEDKPRSAEQAKGEGK 486 (621)
Q Consensus 444 ~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~w~~~~~ 486 (621)
+. ....+..|...+..+.+++++..++ +++.|+.+++|++...
T Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 292 PIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 53 3445667888899999999999998 8999999999997643
No 87
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.3e-36 Score=306.41 Aligned_cols=295 Identities=15% Similarity=0.152 Sum_probs=221.4
Q ss_pred cccccccCcEEEEEEcc-CCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECC-CCCEEEEEeCCC
Q psy15549 75 SDLSRHQKAVNVVRFSP-NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP-NGELLASGDDES 151 (621)
Q Consensus 75 ~~~~~h~~~V~~l~~sp-dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp-~g~~l~s~s~dg 151 (621)
....+|...|+||+|+| ++++||+|+ |+.|+||++..+.. .....+.+|.+.|++++|+| ++++|++|+.||
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-----~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-----PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-----CEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-----eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence 34567889999999999 567899988 88999999987632 34455678999999999998 789999999999
Q ss_pred cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Q psy15549 152 TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILT 231 (621)
Q Consensus 152 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 231 (621)
+|++||+.+.... .......+...+.+++|+|++++|++|+.||.|++||++ ++.+..+.
T Consensus 188 ~v~iwd~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~ 247 (435)
T 4e54_B 188 TTRLQDFKGNILR-------------------VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLR 247 (435)
T ss_dssp CEEEEETTSCEEE-------------------EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSB
T ss_pred EEEEeeccCCcee-------------------EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEe
Confidence 9999999765321 112223445568899999999999999999999999985 55677888
Q ss_pred cCCcceEEEEEcCCCC-EEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCC
Q psy15549 232 EHKKFVQGVAWDPKNQ-YVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPD 310 (621)
Q Consensus 232 ~~~~~v~~l~~sp~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd 310 (621)
+|...|.+++|+|++. +|++++.|+.|++||+++.+....+. ....|...|.+++|+|+
T Consensus 248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~--------------------~~~~h~~~v~~~~~spd 307 (435)
T 4e54_B 248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL--------------------YSLPHRHPVNAACFSPD 307 (435)
T ss_dssp CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS--------------------BCCBCSSCEEECCBCTT
T ss_pred cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE--------------------EeeeccccccceeECCC
Confidence 9999999999999886 78899999999999998765433221 12345567888999998
Q ss_pred CCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcC
Q psy15549 311 GQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATE 390 (621)
Q Consensus 311 g~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 390 (621)
|++|++++ .|
T Consensus 308 g~~l~s~~----------------------------------------------------------------------~D 317 (435)
T 4e54_B 308 GARLLTTD----------------------------------------------------------------------QK 317 (435)
T ss_dssp SSEEEEEE----------------------------------------------------------------------SS
T ss_pred CCeeEEEc----------------------------------------------------------------------CC
Confidence 88877766 55
Q ss_pred CcEEEEeCCCCceeEEEeccccc------ceEEEEEcCCCCeEEEEe------------CCCcEEEEEecCCcCCcccC-
Q psy15549 391 NNILLYDTQHASPFAFIANIHYT------KLTDITWSSDGKVLIASS------------TDGYCSIISFGDNEIGIPYV- 451 (621)
Q Consensus 391 g~i~iwd~~~~~~~~~~~~~h~~------~v~~~~~spdg~~l~s~s------------~dg~i~iw~~~~~~~~~~~~- 451 (621)
+.|+|||+.++.....+. .|.. .+..+.|+|++.++++++ .++.|++||..++++...+.
T Consensus 318 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~ 396 (435)
T 4e54_B 318 SEIRVYSASQWDCPLGLI-PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD 396 (435)
T ss_dssp SCEEEEESSSSSSEEEEC-CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC
T ss_pred CEEEEEECCCCccceEEe-cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC
Confidence 666666666655444432 1221 233445566555555543 34679999999998877765
Q ss_pred CCCCccccc-CCCCCCCCcccCCCcccHHHhcccCc
Q psy15549 452 PPSGEESKE-NDPTKGEPVRSEDKPRSAEQAKGEGK 486 (621)
Q Consensus 452 ~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~w~~~~~ 486 (621)
.+...+..+ .|+|+|..+++++ ++.|++|+++..
T Consensus 397 ~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 397 PESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp SSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred CCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 455566665 6899999999876 778999997643
No 88
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-36 Score=309.04 Aligned_cols=326 Identities=13% Similarity=0.115 Sum_probs=232.4
Q ss_pred ccc-ccccCcEEEEEEcc-CCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCC
Q psy15549 75 SDL-SRHQKAVNVVRFSP-NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDES 151 (621)
Q Consensus 75 ~~~-~~h~~~V~~l~~sp-dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg 151 (621)
..+ .+|.+.|++++|+| ++++|++|+ |+.|++|++....... ....... .+|...|.+++|+|++++|++|+.||
T Consensus 56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg 133 (437)
T 3gre_A 56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSLT-YDCSSTVTQITMIPNFDAFAVSSKDG 133 (437)
T ss_dssp EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSEE-EECSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-ccceeee-ccCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 346 88999999999999 999999998 8889999997621110 0111222 25899999999999999999999999
Q ss_pred cEEEEEcc---CCCCCCCCCCCCcccccccccceeeeeeecC--CCCCeEEEE--ECCCCCEEEEEeCCCeEEEEECCCC
Q psy15549 152 TIIVWKQK---TDQDLPEFPSSNLDEENVNKEHWIVTKILRG--HLEDVYDIS--WSPTSTHLISGSVDNTAIMWDVHKG 224 (621)
Q Consensus 152 ~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~--~spd~~~l~s~~~dg~i~vwd~~~~ 224 (621)
.|++||+. +++....+. ........+.. +...+.++. +++++.+|++++.|+.|++||++++
T Consensus 134 ~i~vwd~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 202 (437)
T 3gre_A 134 QIIVLKVNHYQQESEVKFLN-----------CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL 202 (437)
T ss_dssp EEEEEEEEEEEETTEEEEEE-----------EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC
T ss_pred EEEEEEeccccCCceeeccc-----------cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 99999995 433221110 00000111122 667788888 6789999999999999999999999
Q ss_pred cEEEEecc--CCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccce
Q psy15549 225 KNLGILTE--HKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFF 302 (621)
Q Consensus 225 ~~~~~~~~--~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 302 (621)
+.+..+.. |...|.+++|+|++++|++|+.||.|++||+++++.+..+.. .+...|
T Consensus 203 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------------~~~~~v 260 (437)
T 3gre_A 203 ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF----------------------GDHAPI 260 (437)
T ss_dssp CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC----------------------TTCEEE
T ss_pred eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec----------------------CCCCce
Confidence 99999987 889999999999999999999999999999999888776531 223456
Q ss_pred eeeee----cCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCcc
Q psy15549 303 RRLTF----SPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFK 378 (621)
Q Consensus 303 ~~~~~----spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (621)
.+++| ++++.+|++++ .|+.+++|++.... ....+.++...+..+.|.|.
T Consensus 261 ~~~~~~~~~s~~~~~l~s~~-----~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~-------------- 314 (437)
T 3gre_A 261 THVEVCQFYGKNSVIVVGGS-----SKTFLTIWNFVKGH-------CQYAFINSDEQPSMEHFLPI-------------- 314 (437)
T ss_dssp EEEEECTTTCTTEEEEEEES-----TTEEEEEEETTTTE-------EEEEEESSSSCCCGGGGSCB--------------
T ss_pred EEEEeccccCCCccEEEEEc-----CCCcEEEEEcCCCc-------EEEEEEcCCCCCccceeccc--------------
Confidence 78844 44566666666 56666666543211 11122223333333333330
Q ss_pred CCCcEEEEEEcCCcEEEEeCCCCceeEEEe-cccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCC-----
Q psy15549 379 LPYRIVIAVATENNILLYDTQHASPFAFIA-NIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVP----- 452 (621)
Q Consensus 379 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~----- 452 (621)
+..+ .+.. +. ..|...|++++|+ ++++|++|+.||.|++||+.+++....+..
T Consensus 315 --~~~l----~~~~--------------~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 373 (437)
T 3gre_A 315 --EKGL----EELN--------------FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFS 373 (437)
T ss_dssp --CSSG----GGCC--------------CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CC
T ss_pred --cccc----ccce--------------ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccC
Confidence 0000 0000 00 1277889999999 889999999999999999999988877765
Q ss_pred --------------------------------CCCcccccCCCCC--CCCcccCCCcccHHHhc
Q psy15549 453 --------------------------------PSGEESKENDPTK--GEPVRSEDKPRSAEQAK 482 (621)
Q Consensus 453 --------------------------------~~~~~~~~~~~~~--~~~~~s~~~~~~~~~w~ 482 (621)
|...+..+.+.++ +..+++++.+|.|++|+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 374 DVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 5566677777766 66888999999998884
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5e-36 Score=302.38 Aligned_cols=265 Identities=15% Similarity=0.203 Sum_probs=194.2
Q ss_pred cccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEE
Q psy15549 77 LSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIV 155 (621)
Q Consensus 77 ~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~v 155 (621)
+..|.+.|++++|+|+|++|++++ |+.|++|++..+. ......+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-----WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-----EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-----eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 344678999999999999999996 8899999998652 2456778899999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCc---EEEEecc
Q psy15549 156 WKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGK---NLGILTE 232 (621)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~ 232 (621)
||+.++.... ....+.+|...|.+++|+|++++|++++.|+.|++||+++++ ....+..
T Consensus 82 wd~~~~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 143 (377)
T 3dwl_C 82 YEKRPDGTWK------------------QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR 143 (377)
T ss_dssp C------CCC------------------CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS
T ss_pred EEcCCCCcee------------------eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec
Confidence 9998876211 125567899999999999999999999999999999999887 3677777
Q ss_pred -CCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCC
Q psy15549 233 -HKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDG 311 (621)
Q Consensus 233 -~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg 311 (621)
|...|.+++|+|++++|++++.|+.|++||+............. .+... .....+... .+...|.+++|+|++
T Consensus 144 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~-~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 144 PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASV----WGSRL-PFNTVCAEY-PSGGWVHAVGFSPSG 217 (377)
T ss_dssp SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCS----SCSCC-CEEEEEECC-CCSSSEEEEEECTTS
T ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccc----ccccc-chhhhhhcc-cCCceEEEEEECCCC
Confidence 99999999999999999999999999999997544221110000 00000 000001111 444556666666666
Q ss_pred CeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCC
Q psy15549 312 QLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATEN 391 (621)
Q Consensus 312 ~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 391 (621)
++|++ ++.|+
T Consensus 218 ~~l~~----------------------------------------------------------------------~~~d~ 227 (377)
T 3dwl_C 218 NALAY----------------------------------------------------------------------AGHDS 227 (377)
T ss_dssp SCEEE----------------------------------------------------------------------EETTT
T ss_pred CEEEE----------------------------------------------------------------------EeCCC
Confidence 65555 44678
Q ss_pred cEEEEeCCCCce----eEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEec
Q psy15549 392 NILLYDTQHASP----FAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFG 442 (621)
Q Consensus 392 ~i~iwd~~~~~~----~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~ 442 (621)
.|++||+.+++. +..+ .+|...|++++|+|+|++|++++.|+.+ +|+..
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 228 SVTIAYPSAPEQPPRALITV-KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEC-CEECSTTSCEEECCCE-ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred cEEEEECCCCCCcceeeEee-cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 888888888776 5555 4689999999999999999998766655 77665
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.9e-34 Score=295.07 Aligned_cols=280 Identities=20% Similarity=0.363 Sum_probs=226.5
Q ss_pred cCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEc
Q psy15549 11 HNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFS 90 (621)
Q Consensus 11 ~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 90 (621)
+|..+|+|++| +++ +|++|+.||.|+ +||+.+++.. ..+.+|.+.|.+++|
T Consensus 131 ~~~~~v~~~~~--d~~-----~l~~g~~dg~i~--------------iwd~~~~~~~-------~~~~~h~~~v~~l~~- 181 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-----KIVSGLRDNTIK--------------IWDKNTLECK-------RILTGHTGSVLCLQY- 181 (435)
T ss_dssp SSCCCEEEEEC--CSS-----EEEEEESSSCEE--------------EEESSSCCEE-------EEECCCSSCEEEEEC-
T ss_pred CCCCcEEEEEE--CCC-----EEEEEeCCCeEE--------------EEeCCCCeEE-------EEEcCCCCcEEEEEE-
Confidence 46678999988 676 999999999999 9988776543 347899999999999
Q ss_pred cCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q psy15549 91 PNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPS 169 (621)
Q Consensus 91 pdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 169 (621)
++++|++|+ |+.|++|++..+ .....+.+|...|.+++|++ .+|++|+.||.|++||+.++....
T Consensus 182 -~~~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~---- 247 (435)
T 1p22_A 182 -DERVIITGSSDSTVRVWDVNTG-------EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDIT---- 247 (435)
T ss_dssp -CSSEEEEEETTSCEEEEESSSC-------CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCE----
T ss_pred -CCCEEEEEcCCCeEEEEECCCC-------cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCce----
Confidence 788999988 889999999887 56777889999999999974 599999999999999998876531
Q ss_pred CCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEE
Q psy15549 170 SNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYV 249 (621)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 249 (621)
....+.+|...|.+++| ++++|++|+.||.|++||+++++.+..+.+|...|.++.|+ +++|
T Consensus 248 --------------~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l 309 (435)
T 1p22_A 248 --------------LRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLV 309 (435)
T ss_dssp --------------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEE
T ss_pred --------------eeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEE
Confidence 12567789999999999 78899999999999999999999999999999999999995 7899
Q ss_pred EEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCc
Q psy15549 250 ATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRK 329 (621)
Q Consensus 250 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~ 329 (621)
++|+.||.|++||+++++.+..+..+ ...|.+++| ++.+|
T Consensus 310 ~~g~~dg~i~iwd~~~~~~~~~~~~h-----------------------~~~v~~~~~--~~~~l--------------- 349 (435)
T 1p22_A 310 VSGSSDNTIRLWDIECGACLRVLEGH-----------------------EELVRCIRF--DNKRI--------------- 349 (435)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCC-----------------------SSCEEEEEC--CSSEE---------------
T ss_pred EEEeCCCeEEEEECCCCCEEEEEeCC-----------------------cCcEEEEEe--cCCEE---------------
Confidence 99999999999999998877666422 334456665 44444
Q ss_pred ceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCc-------
Q psy15549 330 PISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHAS------- 402 (621)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------- 402 (621)
++++.||.|++||+.++.
T Consensus 350 -------------------------------------------------------~sg~~dg~i~vwd~~~~~~~~~~~~ 374 (435)
T 1p22_A 350 -------------------------------------------------------VSGAYDGKIKVWDLVAALDPRAPAG 374 (435)
T ss_dssp -------------------------------------------------------EEEETTSCEEEEEHHHHTSTTSCTT
T ss_pred -------------------------------------------------------EEEeCCCcEEEEECCCCCCcccccc
Confidence 445567777777776544
Q ss_pred --eeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcc
Q psy15549 403 --PFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIP 449 (621)
Q Consensus 403 --~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~ 449 (621)
.+..+ .+|...|++++| ++++|++++.||.|++||+.++.....
T Consensus 375 ~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 375 TLCLRTL-VEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp TTEEEEE-CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---------
T ss_pred chheeec-cCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 55555 469999999999 788999999999999999997765443
No 91
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.1e-34 Score=295.07 Aligned_cols=297 Identities=15% Similarity=0.213 Sum_probs=235.2
Q ss_pred CeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEcc-CC
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP-NG 93 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 93 (621)
....++++|+.. .++++|+.||.|+ ||++....... .....+.+|.+.|.+++|+| ++
T Consensus 36 ~~~~~~~~~~~~----~~~~~~~~~g~i~--------------v~~~~~~~~~~---~~~~~~~~h~~~V~~~~~~p~~~ 94 (402)
T 2aq5_A 36 DSGFCAVNPKFM----ALICEASGGGAFL--------------VLPLGKTGRVD---KNVPLVCGHTAPVLDIAWCPHND 94 (402)
T ss_dssp SSCSEEECSSEE----EEEBCCSSSCCEE--------------EEETTCCEECC---TTCCCBCCCSSCEEEEEECTTCT
T ss_pred CCCcEEECCCeE----EEEEEEcCCCEEE--------------EEECccCCCCC---CCCceEecCCCCEEEEEeCCCCC
Confidence 455688999875 3555689999999 88875543211 12335789999999999999 99
Q ss_pred CEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCC-CEEEEEeCCCcEEEEEccCCCCCCCCCCCC
Q psy15549 94 ELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNG-ELLASGDDESTIIVWKQKTDQDLPEFPSSN 171 (621)
Q Consensus 94 ~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 171 (621)
++|++|+ |+.|++|++..+............+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.+
T Consensus 95 ~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~------- 167 (402)
T 2aq5_A 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV------- 167 (402)
T ss_dssp TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE-------
T ss_pred CEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc-------
Confidence 9999998 88899999987642221113456778999999999999998 69999999999999999987643
Q ss_pred cccccccccceeeeeee--cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCcc-eEEEEEcCCCC
Q psy15549 172 LDEENVNKEHWIVTKIL--RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGIL-TEHKKF-VQGVAWDPKNQ 247 (621)
Q Consensus 172 ~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~-v~~l~~sp~~~ 247 (621)
..+ ..|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..|.+. +.+++|+|+++
T Consensus 168 --------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (402)
T 2aq5_A 168 --------------LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK 233 (402)
T ss_dssp --------------EEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred --------------EEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence 455 689999999999999999999999999999999999999888 778776 89999999999
Q ss_pred EEEEE---eCCCcEEEEEccCcee-eeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccC
Q psy15549 248 YVATL---SSDRSLRTYSIQSKKV-ISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLEN 323 (621)
Q Consensus 248 ~l~s~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~ 323 (621)
+|++| +.|+.|++||++++.. +.... ..+...+.+++|+|++++|++++
T Consensus 234 ~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~----------------------~~~~~~v~~~~~s~~~~~l~~~g----- 286 (402)
T 2aq5_A 234 ILTTGFSRMSERQVALWDTKHLEEPLSLQE----------------------LDTSSGVLLPFFDPDTNIVYLCG----- 286 (402)
T ss_dssp EEEEEECTTCCEEEEEEETTBCSSCSEEEE----------------------CCCCSSCEEEEEETTTTEEEEEE-----
T ss_pred EEEEeccCCCCceEEEEcCccccCCceEEe----------------------ccCCCceeEEEEcCCCCEEEEEE-----
Confidence 99998 7899999999987653 11111 12234567888888888776433
Q ss_pred CCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCce
Q psy15549 324 SDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASP 403 (621)
Q Consensus 324 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 403 (621)
+.|+.|++||+.++++
T Consensus 287 ----------------------------------------------------------------~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 287 ----------------------------------------------------------------KGDSSIRYFEITSEAP 302 (402)
T ss_dssp ----------------------------------------------------------------TTCSCEEEEEECSSTT
T ss_pred ----------------------------------------------------------------cCCCeEEEEEecCCCc
Confidence 2578899999988874
Q ss_pred -eEEEec-ccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcC
Q psy15549 404 -FAFIAN-IHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEI 446 (621)
Q Consensus 404 -~~~~~~-~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~ 446 (621)
+..+.. .|...|.+++|+|++.++++ .++.+++|++.++.+
T Consensus 303 ~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 303 FLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp CEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred ceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 333322 25689999999999998875 567999999998654
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.1e-35 Score=286.80 Aligned_cols=258 Identities=21% Similarity=0.324 Sum_probs=204.1
Q ss_pred ceeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEE
Q psy15549 6 PEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVN 85 (621)
Q Consensus 6 ~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 85 (621)
..+..+|.++|++++|+|+++ +||+|+.|+.|+ |||+.++.. .....+.+|.+.|.
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g~-----~lasgs~D~~v~--------------lwd~~~~~~-----~~~~~l~gH~~~V~ 61 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYGT-----RLATCSSDRSVK--------------IFDVRNGGQ-----ILIADLRGHEGPVW 61 (316)
T ss_dssp --------CCEEEEEECGGGC-----EEEEEETTTEEE--------------EEEEETTEE-----EEEEEEECCSSCEE
T ss_pred eeecccccCeEEEeeEcCCCC-----EEEEEeCCCeEE--------------EEEecCCCc-----EEEEEEcCCCccEE
Confidence 345668999999999999998 999999999999 998876532 12345889999999
Q ss_pred EEEEcc--CCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCC--CCEEEEEeCCCcEEEEEccC
Q psy15549 86 VVRFSP--NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN--GELLASGDDESTIIVWKQKT 160 (621)
Q Consensus 86 ~l~~sp--dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~--g~~l~s~s~dg~i~vwd~~~ 160 (621)
+++|++ ++++|++|+ |+.|++|++..+. ......+.+|...|.+++|+|+ +.+|++|+.|+.|++||+..
T Consensus 62 ~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 62 QVAWAHPMYGNILASCSYDRKVIIWREENGT-----WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG 136 (316)
T ss_dssp EEEECCGGGSSCEEEEETTSCEEEECCSSSC-----CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred EEEeCCCCCCCEEEEEECCCEEEEEECCCCc-----ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence 999986 489999988 8999999998652 1344567789999999999997 78999999999999999986
Q ss_pred CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC-----------------CCEEEEEeCCCeEEEEECCC
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT-----------------STHLISGSVDNTAIMWDVHK 223 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd-----------------~~~l~s~~~dg~i~vwd~~~ 223 (621)
.... .....+.+|...|.+++|+|+ +++|++|+.|+.|++||++.
T Consensus 137 ~~~~------------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~ 198 (316)
T 3bg1_A 137 EGQW------------------EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE 198 (316)
T ss_dssp SSCE------------------EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT
T ss_pred CCCc------------------ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC
Confidence 5321 112445689999999999997 47899999999999999975
Q ss_pred C---cEEEEeccCCcceEEEEEcCCC----CEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccC
Q psy15549 224 G---KNLGILTEHKKFVQGVAWDPKN----QYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDD 296 (621)
Q Consensus 224 ~---~~~~~~~~~~~~v~~l~~sp~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (621)
. +++..+.+|...|.+++|+|++ .+|++++.|++|++|++.+....... .....
T Consensus 199 ~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~-------------------~~~~~ 259 (316)
T 3bg1_A 199 DGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS-------------------PKLLH 259 (316)
T ss_dssp TSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCB-------------------CCEEE
T ss_pred CCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchh-------------------hhhhh
Confidence 5 4667788999999999999986 88999999999999998763110000 00001
Q ss_pred CcccceeeeeecCCCCeEEeccccccCCCCCCcceeee
Q psy15549 297 TMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVT 334 (621)
Q Consensus 297 ~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~ 334 (621)
.+...|.+++|+|++++|++++ .|+.+++|+..
T Consensus 260 ~~~~~v~~v~~sp~g~~las~~-----~D~~v~lw~~~ 292 (316)
T 3bg1_A 260 KFNDVVWHVSWSITANILAVSG-----GDNKVTLWKES 292 (316)
T ss_dssp ECSSCEEEEEECTTTCCEEEEE-----SSSCEEEEEEC
T ss_pred cCCCcEEEEEEcCCCCEEEEEc-----CCCeEEEEEEC
Confidence 2345789999999999999999 89999999864
No 93
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-36 Score=310.33 Aligned_cols=340 Identities=9% Similarity=-0.005 Sum_probs=242.9
Q ss_pred ccCcEEEEEEccCC---------CEEEEE-------------------c-CCceEEEEeccCccccccceecccccccCC
Q psy15549 80 HQKAVNVVRFSPNG---------ELLASG-------------------D-DVGKEIWYLTERESGIANVEFASDLSRHQK 130 (621)
Q Consensus 80 h~~~V~~l~~spdg---------~~las~-------------------~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~ 130 (621)
+.+.|.+|+|+|++ ++||+| + |+.|+||++..+... ......+.+|.+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~---~~~~~~l~~~~~ 208 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH---CVKVQTIVHSFG 208 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC---EEEEEEEEECCC
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC---ceEEEEEEecCC
Confidence 46678888888765 566653 3 567999999765311 111234567889
Q ss_pred CeEEEEECCC------CCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCC
Q psy15549 131 AVNVVRFSPN------GELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTS 204 (621)
Q Consensus 131 ~V~~i~~sp~------g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~ 204 (621)
.|.+++|+|+ +.+||+++.||+|+|||+..+....... . ..-.....+.+|...|++++|++++
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~--------~--~~~~p~~~l~~h~~~v~sv~~s~~~ 278 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF--------K--MCEKPSLTLSLADSLITTFDFLSPT 278 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE--------E--CCCSCSEEECCTTTCEEEEEESSSS
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc--------e--eecCceEEEEcCCCCEEEEEecCCC
Confidence 9999999996 5799999999999999998764321000 0 0000124567899999999999864
Q ss_pred CEEEEEeCCCeEEEEECCCCc-EEEEeccCCcceEEE--EEcCCC-CEEEEEeCCCcEEEEEccCceeeeecccCCCCCC
Q psy15549 205 THLISGSVDNTAIMWDVHKGK-NLGILTEHKKFVQGV--AWDPKN-QYVATLSSDRSLRTYSIQSKKVISRACRSKLPVD 280 (621)
Q Consensus 205 ~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~l--~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 280 (621)
.|++|+.||+|++||++++. +...+.+|...|.++ +|+|++ .+|++++.|++|+|||+++++.+..+..+.
T Consensus 279 -~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~---- 353 (524)
T 2j04_B 279 -TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF---- 353 (524)
T ss_dssp -EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC----
T ss_pred -eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc----
Confidence 89999999999999998764 456678999999999 578888 899999999999999999877654443211
Q ss_pred CccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeee
Q psy15549 281 SSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVK 360 (621)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (621)
....|.+++|+|+++.+++++ .|+++++|++... .....+.+|...+.++.
T Consensus 354 -----------------~~~~v~~v~fsp~~~~l~s~~-----~d~tv~lwd~~~~-------~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 354 -----------------RGSNLVPVVYCPQIYSYIYSD-----GASSLRAVPSRAA-------FAVHPLVSRETTITAIG 404 (524)
T ss_dssp -----------------SCCSCCCEEEETTTTEEEEEC-----SSSEEEEEETTCT-------TCCEEEEECSSCEEEEE
T ss_pred -----------------ccCcccceEeCCCcCeEEEeC-----CCCcEEEEECccc-------ccceeeecCCCceEEEE
Confidence 011357899999999999988 7899999987642 22234567888999999
Q ss_pred ccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEec----ccccceEEEEEcCCCCeEEEEeCCCcE
Q psy15549 361 CCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN----IHYTKLTDITWSSDGKVLIASSTDGYC 436 (621)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~h~~~v~~~~~spdg~~l~s~s~dg~i 436 (621)
|+| ++..|++++.|++|++||+... .+..... .+...|.+++|+|+|+.+. ... .+
T Consensus 405 ~Sp----------------~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~ 464 (524)
T 2j04_B 405 VSR----------------LHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SY 464 (524)
T ss_dssp CCS----------------SCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CC
T ss_pred eCC----------------CCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--Cc
Confidence 988 6788999999999999998764 2221100 0122578999999998553 322 34
Q ss_pred EEEEec-CCcCCcccCCCCCcccccCCCCCCC---CcccCCCcccHHHhcccCc
Q psy15549 437 SIISFG-DNEIGIPYVPPSGEESKENDPTKGE---PVRSEDKPRSAEQAKGEGK 486 (621)
Q Consensus 437 ~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~w~~~~~ 486 (621)
.+|... ++.+...+.+|...+..+.|+|++. .+++++.+|.|++|++.++
T Consensus 465 ~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 465 EVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred eecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 455443 5677888999999999999999965 8899999999999998765
No 94
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.3e-35 Score=290.57 Aligned_cols=300 Identities=14% Similarity=0.090 Sum_probs=223.8
Q ss_pred cCcEEEEEEccCCCEEEEEcC--------CceEEEEeccCccccc-cc--eecccccccCCCeEEEEECCCCCEEEEE--
Q psy15549 81 QKAVNVVRFSPNGELLASGDD--------VGKEIWYLTERESGIA-NV--EFASDLSRHQKAVNVVRFSPNGELLASG-- 147 (621)
Q Consensus 81 ~~~V~~l~~spdg~~las~~d--------~~v~iw~~~~~~~~~~-~~--~~~~~~~~h~~~V~~i~~sp~g~~l~s~-- 147 (621)
..+|++++|+|||++|++|+. +.|++|++........ .+ .....+.+|...|.+++++ ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 458999999999999999862 2489999976543211 01 1122467788889888774 5566665
Q ss_pred ---------eCCCcEEEEEccCCCCCCCCCCCCcccccccccceee--eeeecCCCCCeEEEEECCCCCEEEEEe--CCC
Q psy15549 148 ---------DDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIV--TKILRGHLEDVYDISWSPTSTHLISGS--VDN 214 (621)
Q Consensus 148 ---------s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~i~~spd~~~l~s~~--~dg 214 (621)
+.|+.+++|++........+ ... ......+...+.+++|+|||++|++++ .|+
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~ 157 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEF--------------LTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPA 157 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEE--------------EEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSC
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEE--------------eeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCC
Confidence 35778999998765432110 000 011234556789999999999987554 689
Q ss_pred eEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccc
Q psy15549 215 TAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFH 294 (621)
Q Consensus 215 ~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (621)
+|+|||+.+++++..+. |...|.+++|+|+|++|++++.+ .+.+|+..++..+....
T Consensus 158 ~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~--------------------- 214 (365)
T 4h5i_A 158 IMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKT--------------------- 214 (365)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEEC---------------------
T ss_pred EEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeee---------------------
Confidence 99999999999998885 77889999999999999998755 56777776766543321
Q ss_pred cCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCC
Q psy15549 295 DDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDK 374 (621)
Q Consensus 295 ~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (621)
...+...|.+++|+|+++++++++ .++..
T Consensus 215 ~~~~~~~v~~v~fspdg~~l~~~s-----~d~~~---------------------------------------------- 243 (365)
T 4h5i_A 215 DFDKNWSLSKINFIADDTVLIAAS-----LKKGK---------------------------------------------- 243 (365)
T ss_dssp CCCTTEEEEEEEEEETTEEEEEEE-----ESSSC----------------------------------------------
T ss_pred cCCCCCCEEEEEEcCCCCEEEEEe-----cCCcc----------------------------------------------
Confidence 123455678999999999988876 22110
Q ss_pred CCccCCCcEEEEEEcCCcEEEEeCCCCcee----EEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcc-
Q psy15549 375 PLFKLPYRIVIAVATENNILLYDTQHASPF----AFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIP- 449 (621)
Q Consensus 375 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~- 449 (621)
...+++|++...... ..+ .+|...|++++|+|||++||+|+.|++|+|||+.+++++..
T Consensus 244 ---------------~~~i~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 244 ---------------GIVLTKISIKSGNTSVLRSKQV-TNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF 307 (365)
T ss_dssp ---------------CEEEEEEEEETTEEEEEEEEEE-ESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ---------------eeEEeecccccceecceeeeee-cCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe
Confidence 114566776655422 223 46889999999999999999999999999999999998876
Q ss_pred cCCCCCcccccCCCCCCCCcccCCCcccHHHhcccCc
Q psy15549 450 YVPPSGEESKENDPTKGEPVRSEDKPRSAEQAKGEGK 486 (621)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~~~~~ 486 (621)
+.+|...++.+.|+|+|+.+++++.|++|++|+++..
T Consensus 308 ~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 308 KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 5789999999999999999999999999999998654
No 95
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1e-33 Score=289.45 Aligned_cols=286 Identities=16% Similarity=0.231 Sum_probs=239.5
Q ss_pred cEEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q psy15549 83 AVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQ 162 (621)
Q Consensus 83 ~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~ 162 (621)
.++.|+||++ ++||+|.|+.|+||+..++.. .....+.+|...|++++|+|+|++||+|+.||.|+|||+.+++
T Consensus 107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~-----~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDI-----LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp TCBCEEECTT-SEEEEEETTEEEEEETTTCCE-----EEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred cceeEEECCC-CEEEEEeCCEEEEEECCCCCE-----EEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence 4678999975 589999999999999988721 2333456788899999999999999999999999999999887
Q ss_pred CCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEEEeccCCcceEEEE
Q psy15549 163 DLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKG-KNLGILTEHKKFVQGVA 241 (621)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~ 241 (621)
.+ ..+.+|...+.+++++ +.+|++|+.|+.+++||.... ..+..+.+|...+..+.
T Consensus 181 ~~---------------------~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 181 RL---------------------RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237 (420)
T ss_dssp EE---------------------EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred EE---------------------EEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence 53 6678999999998885 679999999999999998864 45677889999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccc
Q psy15549 242 WDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCL 321 (621)
Q Consensus 242 ~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~ 321 (621)
|+|+++++++++.|+.+++|+..+++..... +.....+...|.+++|+|++..+++..
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~-------------------~~~~~~~~~~V~~~~~~p~~~~~la~~--- 295 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVP-------------------LQTFTQHQGAVKAVAWCPWQSNVLATG--- 295 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCCSSCSCC-------------------SEEECCCSSCEEEEEECTTCTTEEEEE---
T ss_pred ecCCCCeeeeeeccccceEEeecccccccee-------------------eeeecccCCceeeeeeCCCcccEEEEE---
Confidence 9999999999999999999999876532111 112234556678888888765544321
Q ss_pred cCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCC
Q psy15549 322 ENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHA 401 (621)
Q Consensus 322 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 401 (621)
.++.|+.|++||+.++
T Consensus 296 ----------------------------------------------------------------~gs~D~~I~iwd~~t~ 311 (420)
T 4gga_A 296 ----------------------------------------------------------------GGTSDRHIRIWNVCSG 311 (420)
T ss_dssp ----------------------------------------------------------------ECTTTCEEEEEETTTT
T ss_pred ----------------------------------------------------------------eecCCCEEEEEeCCcc
Confidence 1236899999999999
Q ss_pred ceeEEEecccccceEEEEEcCCCCeEEEEe--CCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCCcccCCCcccHH
Q psy15549 402 SPFAFIANIHYTKLTDITWSSDGKVLIASS--TDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEPVRSEDKPRSAE 479 (621)
Q Consensus 402 ~~~~~~~~~h~~~v~~~~~spdg~~l~s~s--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 479 (621)
+.+..+. +...+.++.|+|+++.|++++ .||.|+|||+.+++.+..+.+|...+..+.|+|+|..+++++.|+.|+
T Consensus 312 ~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 312 ACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEE
T ss_pred ccceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEE
Confidence 9888874 456899999999999998875 799999999999999999999999999999999999999999999999
Q ss_pred HhcccC
Q psy15549 480 QAKGEG 485 (621)
Q Consensus 480 ~w~~~~ 485 (621)
+|++.+
T Consensus 390 iWdv~~ 395 (420)
T 4gga_A 390 LWRCFE 395 (420)
T ss_dssp EECCSC
T ss_pred EEECCC
Confidence 998654
No 96
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-33 Score=282.94 Aligned_cols=258 Identities=17% Similarity=0.263 Sum_probs=208.6
Q ss_pred ccccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCC--CCEEEEEeCC
Q psy15549 74 ASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN--GELLASGDDE 150 (621)
Q Consensus 74 ~~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~--g~~l~s~s~d 150 (621)
...+.+|.+.|++++|+|++++|++|+ |+.|++|++.... ......+.+|...|++++|+++ +++|++|+.|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 345889999999999999999999998 8889999998432 2566778899999999999987 8999999999
Q ss_pred CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCCc--E
Q psy15549 151 STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT--STHLISGSVDNTAIMWDVHKGK--N 226 (621)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd--~~~l~s~~~dg~i~vwd~~~~~--~ 226 (621)
|.|++||+.+++. .....+..|...|.+++|+|+ +.+|++++.|+.|++||+.++. .
T Consensus 79 g~v~iwd~~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 79 GKVLIWKEENGRW-------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp SCEEEEEEETTEE-------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC
T ss_pred CEEEEEEcCCCce-------------------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee
Confidence 9999999988752 123566789999999999999 9999999999999999998873 4
Q ss_pred EEEeccCCcceEEEEEcC-------------CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCcccccccccccc
Q psy15549 227 LGILTEHKKFVQGVAWDP-------------KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLF 293 (621)
Q Consensus 227 ~~~~~~~~~~v~~l~~sp-------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (621)
...+..|...|.+++|+| ++.+|++++.||.|++||++++.....+. .
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------~ 200 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-------------------S 200 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE-------------------E
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE-------------------E
Confidence 456678999999999999 69999999999999999998754321110 0
Q ss_pred ccCCcccceeeeeecCC---CCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCC
Q psy15549 294 HDDTMKSFFRRLTFSPD---GQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKP 370 (621)
Q Consensus 294 ~~~~~~~~i~~~~~spd---g~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (621)
....+...|.+++|+|+ +.+|++
T Consensus 201 ~~~~h~~~v~~~~~sp~~~~~~~l~s------------------------------------------------------ 226 (379)
T 3jrp_A 201 TLEGHSDWVRDVAWSPTVLLRSYLAS------------------------------------------------------ 226 (379)
T ss_dssp EECCCSSCEEEEEECCCCSSSEEEEE------------------------------------------------------
T ss_pred EEecccCcEeEEEECCCCCCCCeEEE------------------------------------------------------
Confidence 11234556788888888 555554
Q ss_pred CCCCCCccCCCcEEEEEEcCCcEEEEeCCCCcee--EEEe--cccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCC
Q psy15549 371 SDDKPLFKLPYRIVIAVATENNILLYDTQHASPF--AFIA--NIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDN 444 (621)
Q Consensus 371 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~--~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~ 444 (621)
++.||.|++||+.++... ..+. ..|...|++++|+|+|++|++++.||.|++|++..+
T Consensus 227 ----------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 227 ----------------VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ----------------EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred ----------------EeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 456788888888776421 1111 247889999999999999999999999999999854
No 97
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.3e-34 Score=284.83 Aligned_cols=282 Identities=12% Similarity=0.076 Sum_probs=232.2
Q ss_pred cccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCC-EEEEEeCCCcEE
Q psy15549 77 LSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE-LLASGDDESTII 154 (621)
Q Consensus 77 ~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~-~l~s~s~dg~i~ 154 (621)
..+|.+.|.+++|+|++++|++++ |+.|++|++...... .....+.+|...|.+++|+|+++ +|++|+.||.|+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 468999999999999999999987 888999999876311 12344558999999999999999 999999999999
Q ss_pred EEEc-cCCCCCCCCCCCCcccccccccceeeeeeecC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC--------
Q psy15549 155 VWKQ-KTDQDLPEFPSSNLDEENVNKEHWIVTKILRG--HLEDVYDISWSPTSTHLISGSVDNTAIMWDVHK-------- 223 (621)
Q Consensus 155 vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~-------- 223 (621)
+||+ .++.. ..+.+ |...|.+++|+| +++|++++.|+.|++||+++
T Consensus 83 ~wd~~~~~~~----------------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 139 (342)
T 1yfq_A 83 KVDLIGSPSF----------------------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp EECSSSSSSE----------------------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred EEEeccCCce----------------------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccc
Confidence 9999 77652 45667 999999999999 99999999999999999987
Q ss_pred -CcEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccC-ceeeeecccCCCCCCCccccccccccccccCCcccc
Q psy15549 224 -GKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQS-KKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSF 301 (621)
Q Consensus 224 -~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (621)
++++..+. |...|.+++|+|++ |++++.|+.|++||+++ +...... ....+...
T Consensus 140 ~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~---------------------~~~~~~~~ 195 (342)
T 1yfq_A 140 KNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTI---------------------EESGLKYQ 195 (342)
T ss_dssp EESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEE---------------------EECSCSSC
T ss_pred cCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccccee---------------------eecCCCCc
Confidence 77666665 88999999999887 89999999999999987 4421111 01133456
Q ss_pred eeeeeecC-CCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCC
Q psy15549 302 FRRLTFSP-DGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLP 380 (621)
Q Consensus 302 i~~~~~sp-dg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (621)
+.+++|+| +++++++++
T Consensus 196 i~~i~~~~~~~~~l~~~~-------------------------------------------------------------- 213 (342)
T 1yfq_A 196 IRDVALLPKEQEGYACSS-------------------------------------------------------------- 213 (342)
T ss_dssp EEEEEECSGGGCEEEEEE--------------------------------------------------------------
T ss_pred eeEEEECCCCCCEEEEEe--------------------------------------------------------------
Confidence 78899998 887776655
Q ss_pred CcEEEEEEcCCcEEEEeCCCC------ceeEEEecccc---------cceEEEEEcCCCCeEEEEeCCCcEEEEEecCCc
Q psy15549 381 YRIVIAVATENNILLYDTQHA------SPFAFIANIHY---------TKLTDITWSSDGKVLIASSTDGYCSIISFGDNE 445 (621)
Q Consensus 381 ~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~h~---------~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~ 445 (621)
.||.|++|++... +....+. .|. ..|++++|+|++++|++++.||.|++||+.+++
T Consensus 214 --------~dg~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 214 --------IDGRVAVEFFDDQGDDYNSSKRFAFR-CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp --------TTSEEEEEECCTTCCSTTCTTCEEEE-CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred --------cCCcEEEEEEcCCCcccccccceeee-cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 5677777777665 5555553 354 499999999999999999999999999999999
Q ss_pred CCcccCCC-CCcccccCCCCCCCCcccCCCccc-HHHhc
Q psy15549 446 IGIPYVPP-SGEESKENDPTKGEPVRSEDKPRS-AEQAK 482 (621)
Q Consensus 446 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~-~~~w~ 482 (621)
....+..+ ...+..+. +++..+++++.|+. .+.+.
T Consensus 285 ~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 285 KIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred HhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 99999888 88888777 99999999999998 55554
No 98
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-33 Score=285.25 Aligned_cols=286 Identities=16% Similarity=0.252 Sum_probs=236.9
Q ss_pred ccccCc--EEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccc-cCCCeEEEEECCCCCEEEEEeCCCcEE
Q psy15549 78 SRHQKA--VNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSR-HQKAVNVVRFSPNGELLASGDDESTII 154 (621)
Q Consensus 78 ~~h~~~--V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-h~~~V~~i~~sp~g~~l~s~s~dg~i~ 154 (621)
.+|... +.+++|++ +.+++++.++.|++|++..+ .....+.. |...|.+++|+|++++|++|+.||.|+
T Consensus 88 ~~~~~~~~~~~~~~s~-~~l~~~~~d~~v~lw~~~~~-------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN-LNVVAVALERNVYVWNADSG-------SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVD 159 (401)
T ss_dssp TTCCCCTTCBCEEECT-TSEEEEEETTEEEEEETTTC-------CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCcCCceEEEEeecC-CCEEEEECCCeEEEeeCCCC-------cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEE
Confidence 355544 45577775 44566666999999999876 33333333 889999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEEeccC
Q psy15549 155 VWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVH-KGKNLGILTEH 233 (621)
Q Consensus 155 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~ 233 (621)
+||+.+++.+ ..+.+|...|.+++| ++.+|++++.||.|++||++ ....+..+..|
T Consensus 160 iwd~~~~~~~---------------------~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 160 IYDVESQTKL---------------------RTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp EEETTTCCEE---------------------EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred EEECcCCeEE---------------------EEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 9999888743 667799999999999 46799999999999999998 56678888899
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCe
Q psy15549 234 KKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQL 313 (621)
Q Consensus 234 ~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~ 313 (621)
...|.+++|+|++++|++++.||.|++||+++++.+..+. .+...|.+++|+|++..
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----------------------~~~~~v~~~~~~p~~~~ 273 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-----------------------NHNAAVKAVAWCPWQSN 273 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC-----------------------CCSSCCCEEEECTTSTT
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec-----------------------CCcceEEEEEECCCCCC
Confidence 9999999999999999999999999999999887766654 23455789999998765
Q ss_pred EEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcE
Q psy15549 314 LIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNI 393 (621)
Q Consensus 314 l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 393 (621)
+++.++ ++.|+.|
T Consensus 274 ll~~~~-------------------------------------------------------------------gs~d~~i 286 (401)
T 4aez_A 274 LLATGG-------------------------------------------------------------------GTMDKQI 286 (401)
T ss_dssp EEEEEC-------------------------------------------------------------------CTTTCEE
T ss_pred EEEEec-------------------------------------------------------------------CCCCCEE
Confidence 544320 1258999
Q ss_pred EEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEe--CCCcEEEEEecCCcCCcc--cCCCCCcccccCCCCCCCCc
Q psy15549 394 LLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASS--TDGYCSIISFGDNEIGIP--YVPPSGEESKENDPTKGEPV 469 (621)
Q Consensus 394 ~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s--~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 469 (621)
++||+.+++.+..+. +...|.+++|+|+|++|++++ .||.|++|++.++..... +..|...+..+.+++++..+
T Consensus 287 ~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (401)
T 4aez_A 287 HFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRIL 364 (401)
T ss_dssp EEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEE
T ss_pred EEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEE
Confidence 999999999888884 667899999999999999954 899999999998765544 56788899999999999999
Q ss_pred ccCCCcccHHHhcccCc
Q psy15549 470 RSEDKPRSAEQAKGEGK 486 (621)
Q Consensus 470 ~s~~~~~~~~~w~~~~~ 486 (621)
++++.|+.+++|++...
T Consensus 365 ~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 365 STAASDENLKFWRVYDG 381 (401)
T ss_dssp EEECTTSEEEEEECCC-
T ss_pred EEEeCCCcEEEEECCCC
Confidence 99999999999997644
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=9.6e-33 Score=277.06 Aligned_cols=300 Identities=13% Similarity=0.155 Sum_probs=226.4
Q ss_pred ceeeecCCCCeEEEecccc---ccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccC
Q psy15549 6 PEISWHNRDPVLSVDIQLK---QEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQK 82 (621)
Q Consensus 6 ~~~~~~h~~~v~~l~~spd---~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~ 82 (621)
..+..+|.+.|++|+|+|+ |+ +|++|+.||.|+ ||++.+.... ....+.+|..
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~-----~l~~~~~dg~i~--------------iw~~~~~~~~-----~~~~~~~h~~ 87 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGN-----FLIAGSWANDVR--------------CWEVQDSGQT-----IPKAQQMHTG 87 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSE-----EEEEEETTSEEE--------------EEEECTTSCE-----EEEEEEECSS
T ss_pred eEeccCCCCceEEEEEcCCCCCce-----EEEEECCCCcEE--------------EEEcCCCCce-----eEEEeccccC
Confidence 4556789999999999999 57 999999999999 9998863221 1235788999
Q ss_pred cEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEE--CCCCCEEEEEeCCCcEEEEEcc
Q psy15549 83 AVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRF--SPNGELLASGDDESTIIVWKQK 159 (621)
Q Consensus 83 ~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~--sp~g~~l~s~s~dg~i~vwd~~ 159 (621)
.|.+++|+|++++|++++ |+.|++|++..+ ... .+..|...|.+++| +|++.+|++++.||.|++||+.
T Consensus 88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-------~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSN-------QAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159 (368)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTT-------EEE-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS
T ss_pred CEEEEEECcCCCEEEEEcCCCcEEEEEcCCC-------Cce-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC
Confidence 999999999999999988 888999999876 323 35679999999999 8999999999999999999999
Q ss_pred CCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEe--ccCCcce
Q psy15549 160 TDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGIL--TEHKKFV 237 (621)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v 237 (621)
+++.+ ..+..+. .+.++.+.+ ..+++++.++.+.+|++......... ..+...+
T Consensus 160 ~~~~~---------------------~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 215 (368)
T 3mmy_A 160 SSNPM---------------------MVLQLPE-RCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQH 215 (368)
T ss_dssp CSSCS---------------------EEEECSS-CEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCE
T ss_pred CCcEE---------------------EEEecCC-CceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCC
Confidence 88764 3334443 567777764 47888999999999999876544332 2234456
Q ss_pred EEEEEcCCCCE----EEEEeCCCcEEEEEccCce---eeeecccCCCCCCCccccccccccccccCCcccceeeeeecCC
Q psy15549 238 QGVAWDPKNQY----VATLSSDRSLRTYSIQSKK---VISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPD 310 (621)
Q Consensus 238 ~~l~~sp~~~~----l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd 310 (621)
.++++.++... +++++.||.|++||++... .+..+..+..... ......+...|.+++|+|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~v~~~~~sp~ 284 (368)
T 3mmy_A 216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT-----------NTSAPQDIYAVNGIAFHPV 284 (368)
T ss_dssp EEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---------------CCCEEECCEEEEEECTT
T ss_pred ceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccc-----------cccccccccceEEEEEecC
Confidence 66666665544 9999999999999998763 2333322211000 0001112224677777777
Q ss_pred CCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcC
Q psy15549 311 GQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATE 390 (621)
Q Consensus 311 g~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 390 (621)
+++|++ ++.|
T Consensus 285 ~~~l~s----------------------------------------------------------------------~~~d 294 (368)
T 3mmy_A 285 HGTLAT----------------------------------------------------------------------VGSD 294 (368)
T ss_dssp TCCEEE----------------------------------------------------------------------EETT
T ss_pred CCEEEE----------------------------------------------------------------------EccC
Confidence 666655 4478
Q ss_pred CcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecC
Q psy15549 391 NNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGD 443 (621)
Q Consensus 391 g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~ 443 (621)
|.|++||+.+++.+..+. +|...|++++|+|+|++|++++.|+..+.|++.+
T Consensus 295 g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 295 GRFSFWDKDARTKLKTSE-QLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp SCEEEEETTTTEEEEECC-CCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred CeEEEEECCCCcEEEEec-CCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 999999999999888874 6999999999999999999999998666655443
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=277.43 Aligned_cols=259 Identities=21% Similarity=0.354 Sum_probs=216.8
Q ss_pred ceeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEE
Q psy15549 6 PEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVN 85 (621)
Q Consensus 6 ~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 85 (621)
..+..+|.++|++++|+|+++ +||+|+.||.|+ ||++.... ......+.+|...|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~-----~l~~~~~dg~i~--------------iw~~~~~~-----~~~~~~~~~h~~~v~ 59 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGK-----RLATCSSDKTIK--------------IFEVEGET-----HKLIDTLTGHEGPVW 59 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSS-----EEEEEETTSCEE--------------EEEEETTE-----EEEEEEECCCSSCEE
T ss_pred cEEecCCcccEEEEEEcCCCC-----EEEEEECCCcEE--------------EEecCCCc-----ceeeeEecCCCCcEE
Confidence 456778999999999999998 999999999999 99887432 123445789999999
Q ss_pred EEEEccC--CCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCC--CCEEEEEeCCCcEEEEEccC
Q psy15549 86 VVRFSPN--GELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN--GELLASGDDESTIIVWKQKT 160 (621)
Q Consensus 86 ~l~~spd--g~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~--g~~l~s~s~dg~i~vwd~~~ 160 (621)
+++|+++ +++|++++ |+.|++|++..+. ......+..|...|.+++|+|+ +.+|++++.|+.|++||+.+
T Consensus 60 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 134 (379)
T 3jrp_A 60 RVDWAHPKFGTILASCSYDGKVLIWKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 134 (379)
T ss_dssp EEEECCGGGCSEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred EEEeCCCCCCCEEEEeccCCEEEEEEcCCCc-----eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC
Confidence 9999987 99999988 8899999998862 1356677889999999999999 99999999999999999988
Q ss_pred CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC-------------CCCEEEEEeCCCeEEEEECCCCc--
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP-------------TSTHLISGSVDNTAIMWDVHKGK-- 225 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-------------d~~~l~s~~~dg~i~vwd~~~~~-- 225 (621)
..... ...+..|...|.+++|+| ++.+|++++.||.|++||++++.
T Consensus 135 ~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 135 NGTTS-------------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 195 (379)
T ss_dssp TSCCC-------------------EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE
T ss_pred CCcee-------------------eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc
Confidence 75431 245678999999999999 69999999999999999998764
Q ss_pred --EEEEeccCCcceEEEEEcCC---CCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCccc
Q psy15549 226 --NLGILTEHKKFVQGVAWDPK---NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKS 300 (621)
Q Consensus 226 --~~~~~~~~~~~v~~l~~sp~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (621)
....+..|...|.+++|+|+ +++|++++.||.|++||++++...... .......+..
T Consensus 196 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------~~~~~~~~~~ 257 (379)
T 3jrp_A 196 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK------------------TLLKEEKFPD 257 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEE------------------EESSSSCCSS
T ss_pred eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcccee------------------eeeccccCCC
Confidence 45677889999999999999 899999999999999999886421110 0112233566
Q ss_pred ceeeeeecCCCCeEEeccccccCCCCCCcceeeee
Q psy15549 301 FFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTH 335 (621)
Q Consensus 301 ~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~ 335 (621)
.|.+++|+|+|++|++++ .|+.+++|++..
T Consensus 258 ~v~~~~~s~~g~~l~~~~-----~dg~i~iw~~~~ 287 (379)
T 3jrp_A 258 VLWRASWSLSGNVLALSG-----GDNKVTLWKENL 287 (379)
T ss_dssp CEEEEEECSSSCCEEEEE-----SSSSEEEEEEEE
T ss_pred cEEEEEEcCCCCEEEEec-----CCCcEEEEeCCC
Confidence 789999999999999998 899999999873
No 101
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=284.67 Aligned_cols=324 Identities=15% Similarity=0.143 Sum_probs=243.1
Q ss_pred ceeEEeccccccccceeeccccccccCcEEEEEEcc-CCCEEEEEc-CCceEEEEeccCccccccc-e-----ecccccc
Q psy15549 56 GKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP-NGELLASGD-DVGKEIWYLTERESGIANV-E-----FASDLSR 127 (621)
Q Consensus 56 ~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~-d~~v~iw~~~~~~~~~~~~-~-----~~~~~~~ 127 (621)
+++|++....... .+.+|.+.|++++|+| ++++|++|+ |+.|++|++.......... . ......+
T Consensus 25 ~~v~~~~~~~~~~-------~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
T 4a11_B 25 RRVLGLELNKDRD-------VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV 97 (408)
T ss_dssp HHHHTEEECTTEE-------ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTC
T ss_pred ceeeccccCccee-------eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccccccc
Confidence 3488887665543 3788999999999999 999999988 8889999998764211100 0 0111135
Q ss_pred cCCCeEEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC---
Q psy15549 128 HQKAVNVVRFSP-NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT--- 203 (621)
Q Consensus 128 h~~~V~~i~~sp-~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd--- 203 (621)
|...|.+++|+| ++.+|++++.||.|++||+.+++.. .. ..+...+.++.|+|.
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---------------------~~-~~~~~~~~~~~~~~~~~~ 155 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA---------------------DV-FNFEETVYSHHMSPVSTK 155 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE---------------------EE-EECSSCEEEEEECSSCSS
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc---------------------ee-ccCCCceeeeEeecCCCC
Confidence 999999999999 7789999999999999999987643 22 237788999999984
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCC-EEEEEeCCCcEEEEEccCce-eeeecccCCCCCCC
Q psy15549 204 STHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQ-YVATLSSDRSLRTYSIQSKK-VISRACRSKLPVDS 281 (621)
Q Consensus 204 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~ 281 (621)
+.++++++.+|.|++||+.+++.+..+..|...|.+++|+|+++ .|++++.||.|++||++++. .+..+..+....
T Consensus 156 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-- 233 (408)
T 4a11_B 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK-- 233 (408)
T ss_dssp CCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS--
T ss_pred CcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc--
Confidence 45999999999999999999999999999999999999999998 58899999999999998765 333332111100
Q ss_pred ccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeec
Q psy15549 282 SHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKC 361 (621)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (621)
..........+...|.+++|+|++++|+++
T Consensus 234 ------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------------------------------------------- 263 (408)
T 4a11_B 234 ------SQAVESANTAHNGKVNGLCFTSDGLHLLTV-------------------------------------------- 263 (408)
T ss_dssp ------CCCTTTSSCSCSSCEEEEEECTTSSEEEEE--------------------------------------------
T ss_pred ------ceeeccccccccCceeEEEEcCCCCEEEEe--------------------------------------------
Confidence 000111223445566777777776666554
Q ss_pred cceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEec----ccccceEEEEEcCCCCeEEEEeCCCcEE
Q psy15549 362 CPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN----IHYTKLTDITWSSDGKVLIASSTDGYCS 437 (621)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~h~~~v~~~~~spdg~~l~s~s~dg~i~ 437 (621)
+.|+.|++||+.+++....... .....+........+..+++++.|+.|+
T Consensus 264 --------------------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 317 (408)
T 4a11_B 264 --------------------------GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIA 317 (408)
T ss_dssp --------------------------ETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEE
T ss_pred --------------------------cCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEE
Confidence 4677888888877765443321 1112222223334455677788899999
Q ss_pred EEEecCCcCCcccCCCCCcccccCCCCCCCCcccCCCcccHHHhcccCc
Q psy15549 438 IISFGDNEIGIPYVPPSGEESKENDPTKGEPVRSEDKPRSAEQAKGEGK 486 (621)
Q Consensus 438 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~~~~~ 486 (621)
+||+.+++....+..|...+..+.+++++..+++++.|+.+++|++...
T Consensus 318 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 318 VYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred EEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 9999999999999999999999999999999999999999999997654
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=270.12 Aligned_cols=285 Identities=16% Similarity=0.221 Sum_probs=234.9
Q ss_pred EEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCC
Q psy15549 84 VNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQD 163 (621)
Q Consensus 84 V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~ 163 (621)
.++|+||+++ +||+|.|+.|+|||+.++.. .....+.+|...|++++|+|++++|++|+.||+|++||+.+++.
T Consensus 28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~-----~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDI-----LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEETTEEEEEETTTCCE-----EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCCC-EEEEEeCCEEEEEECCCCCE-----EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence 5789999986 88888899999999988721 22234567888999999999999999999999999999998875
Q ss_pred CCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEEEeccCCcceEEEEE
Q psy15549 164 LPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKG-KNLGILTEHKKFVQGVAW 242 (621)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~ 242 (621)
+ ..+.+|...+.++.+ ++..+++++.++.+++|+.... ..+..+.+|...+..+.+
T Consensus 102 ~---------------------~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 102 L---------------------RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp E---------------------EEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred E---------------------EEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence 3 667789988887665 4679999999999999998875 456677889999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecccccc
Q psy15549 243 DPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLE 322 (621)
Q Consensus 243 sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~ 322 (621)
++++++|++++.|+.|++||+++++...... .....+...|.+++++|++..++.
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------------~~~~~~~~~v~~~~~~~~~~~~~~------ 213 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPL-------------------QTFTQHQGAVKAVAWCPWQSNVLA------ 213 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCS-------------------EEECCCCSCEEEEEECTTSTTEEE------
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccce-------------------eeecccCCceEEEEecCCCCcEEE------
Confidence 9999999999999999999998765332211 112233455677778777654432
Q ss_pred CCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCc
Q psy15549 323 NSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHAS 402 (621)
Q Consensus 323 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 402 (621)
+++++.++.|++||.....
T Consensus 214 -------------------------------------------------------------~~~~~~~~~i~lwd~~~~~ 232 (318)
T 4ggc_A 214 -------------------------------------------------------------TGGGTSDRHIRIWNVCSGA 232 (318)
T ss_dssp -------------------------------------------------------------EEECTTTCEEEEEETTTCC
T ss_pred -------------------------------------------------------------EEecCCCCEEEEEeccccc
Confidence 1223467899999999988
Q ss_pred eeEEEecccccceEEEEEcCCCCeEEEEe--CCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCCcccCCCcccHHH
Q psy15549 403 PFAFIANIHYTKLTDITWSSDGKVLIASS--TDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEPVRSEDKPRSAEQ 480 (621)
Q Consensus 403 ~~~~~~~~h~~~v~~~~~spdg~~l~s~s--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 480 (621)
...... +...+..++|+|++..+++++ .||.|++||+.+++++..+.+|...+..+.|+|++..+++++.|+.|++
T Consensus 233 ~~~~~~--~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 233 CLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp EEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred cccccc--ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 776653 677899999999999888765 7999999999999999999999999999999999999999999999999
Q ss_pred hcccC
Q psy15549 481 AKGEG 485 (621)
Q Consensus 481 w~~~~ 485 (621)
|++.+
T Consensus 311 Wd~~~ 315 (318)
T 4ggc_A 311 WRCFE 315 (318)
T ss_dssp ECCSC
T ss_pred EECCC
Confidence 98743
No 103
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=288.14 Aligned_cols=285 Identities=15% Similarity=0.268 Sum_probs=204.9
Q ss_pred cccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCcc----ccccceecccccccC------------CCeEEEEECCCC
Q psy15549 79 RHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERES----GIANVEFASDLSRHQ------------KAVNVVRFSPNG 141 (621)
Q Consensus 79 ~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~----~~~~~~~~~~~~~h~------------~~V~~i~~sp~g 141 (621)
.|.+.|.+++|+|+|++||+|+ |+.|+||++..+.. ....+.....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4678999999999999999998 88899999987641 111233567788898 889999999998
Q ss_pred --CEEEEEeCCCcEEEEEccCCCCCCC---CCC-----------CCccccccccccee-----eeeeecCCCCCeEEEEE
Q psy15549 142 --ELLASGDDESTIIVWKQKTDQDLPE---FPS-----------SNLDEENVNKEHWI-----VTKILRGHLEDVYDISW 200 (621)
Q Consensus 142 --~~l~s~s~dg~i~vwd~~~~~~~~~---~~~-----------~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~i~~ 200 (621)
.+|++++.|+.|++||+.++..... +.. ............+. ......+|...|++++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 7999999999999999876432100 000 00000000000000 11224689999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCC-CcEEE-------EeccCCcceEEEEEcCCC-CEEEEEeCCCcEEEEEccCcee---
Q psy15549 201 SPTSTHLISGSVDNTAIMWDVHK-GKNLG-------ILTEHKKFVQGVAWDPKN-QYVATLSSDRSLRTYSIQSKKV--- 268 (621)
Q Consensus 201 spd~~~l~s~~~dg~i~vwd~~~-~~~~~-------~~~~~~~~v~~l~~sp~~-~~l~s~~~dg~i~iwd~~~~~~--- 268 (621)
+|++++|++| .|+.|++||+.+ ++.+. .+..|...|.+++|+|++ ++|++++.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 799999999984 44444 256899999999999998 9999999999999999998775
Q ss_pred -eeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCce
Q psy15549 269 -ISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAV 347 (621)
Q Consensus 269 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 347 (621)
+..+..+..+... .....+...|.+++|+|+|++|++++
T Consensus 265 ~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~s~~g~~l~~~~----------------------------- 304 (447)
T 3dw8_B 265 HSKLFEEPEDPSNR-----------SFFSEIISSISDVKFSHSGRYMMTRD----------------------------- 304 (447)
T ss_dssp TCEEECCC-----C-----------CHHHHHTTCEEEEEECTTSSEEEEEE-----------------------------
T ss_pred eeeEeccCCCcccc-----------ccccccCceEEEEEECCCCCEEEEee-----------------------------
Confidence 3444322211000 00011223677888888877776544
Q ss_pred ecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCC-CceeEEEecccccc------------
Q psy15549 348 CLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQH-ASPFAFIANIHYTK------------ 414 (621)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~h~~~------------ 414 (621)
. +.|++||+.. ++++..+. +|...
T Consensus 305 -----------------------------------------~-~~v~iwd~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 305 -----------------------------------------Y-LSVKVWDLNMENRPVETYQ-VHEYLRSKLCSLYENDC 341 (447)
T ss_dssp -----------------------------------------S-SEEEEEETTCCSSCSCCEE-SCGGGTTTHHHHHHTSG
T ss_pred -----------------------------------------C-CeEEEEeCCCCccccceee-ccccccccccccccccc
Confidence 5 8888999887 77666663 46432
Q ss_pred ---eEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCC
Q psy15549 415 ---LTDITWSSDGKVLIASSTDGYCSIISFGDNEIG 447 (621)
Q Consensus 415 ---v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~ 447 (621)
+..++|+|+|++|++|+.||.|++||+.+++..
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 334999999999999999999999999988764
No 104
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-32 Score=277.92 Aligned_cols=229 Identities=11% Similarity=0.118 Sum_probs=176.5
Q ss_pred CCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccc------------c--------------
Q psy15549 14 DPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERES------------G-------------- 67 (621)
Q Consensus 14 ~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~------------~-------------- 67 (621)
.++.+++|+|+|+ +|+++. ++.|++||+.+.+....+..|....... .
T Consensus 5 ~p~~~v~~s~dg~-----~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-----LVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp CCCCEEEECSSSS-----EEEEEE-TTEEEEEEEETTTEEEEEEEEECCC------------------------------
T ss_pred ccEEEEEecCCCC-----EEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccccccc
Confidence 4799999999997 777764 7789977776665322223443221100 0
Q ss_pred ----------ccceeeccccccccCcEEEEEEccCCCEE-EEEc-CCceEEEEec--cCccccccceeccccc--ccCCC
Q psy15549 68 ----------IANVEFASDLSRHQKAVNVVRFSPNGELL-ASGD-DVGKEIWYLT--ERESGIANVEFASDLS--RHQKA 131 (621)
Q Consensus 68 ----------~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~-d~~v~iw~~~--~~~~~~~~~~~~~~~~--~h~~~ 131 (621)
...........+|.+.|.+++|+|+|++| ++++ |+.|++|++. .+ .....+. .|...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~~~~~~ 151 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK-------NVLKLRKRFCFSKR 151 (450)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS-------SCEEEEEEEECSSC
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC-------ceeeeeecccCCCC
Confidence 00000111223567789999999999996 7786 8899999998 54 3334443 56789
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC---CCEEE
Q psy15549 132 VNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT---STHLI 208 (621)
Q Consensus 132 V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd---~~~l~ 208 (621)
|.+++|+|++++|++|+.+|.|++|++.+....... ...+.+|...|++++|+|+ +++|+
T Consensus 152 v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~-----------------~~~~~~h~~~v~~~~~sp~~~~~~~l~ 214 (450)
T 2vdu_B 152 PNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT-----------------QEPILGHVSMLTDVHLIKDSDGHQFII 214 (450)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC-----------------CCCSEECSSCEEEEEEEECTTSCEEEE
T ss_pred ceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc-----------------ceeeecccCceEEEEEcCCCCCCcEEE
Confidence 999999999999999999999999999887654200 1345689999999999999 99999
Q ss_pred EEeCCCeEEEEECCCCcEEEE-eccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecc
Q psy15549 209 SGSVDNTAIMWDVHKGKNLGI-LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRAC 273 (621)
Q Consensus 209 s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 273 (621)
+|+.|+.|++||+.+++.+.. +.+|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+.
T Consensus 215 s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 215 TSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp EEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred EEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence 999999999999999988877 56899999999999 99999999999999999999998877664
No 105
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=275.23 Aligned_cols=291 Identities=16% Similarity=0.173 Sum_probs=232.1
Q ss_pred ccccccccCcEEEEEEccC---CCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeC
Q psy15549 74 ASDLSRHQKAVNVVRFSPN---GELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDD 149 (621)
Q Consensus 74 ~~~~~~h~~~V~~l~~spd---g~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~ 149 (621)
...+.+|.+.|++++|+|+ |++|++|+ |+.|++|++..... .....+.+|...|.+++|+|++++|++++.
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-----TIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-----EEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-----eeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 3457899999999999999 69999988 88899999987321 334677889999999999999999999999
Q ss_pred CCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEE
Q psy15549 150 ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISW--SPTSTHLISGSVDNTAIMWDVHKGKNL 227 (621)
Q Consensus 150 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--spd~~~l~s~~~dg~i~vwd~~~~~~~ 227 (621)
||.|++||+.++.. ..+..|...|.+++| +|++.+|++++.||.|++||+++++.+
T Consensus 107 dg~v~iwd~~~~~~----------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 164 (368)
T 3mmy_A 107 DKTAKMWDLSSNQA----------------------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 164 (368)
T ss_dssp TSEEEEEETTTTEE----------------------EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS
T ss_pred CCcEEEEEcCCCCc----------------------eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE
Confidence 99999999988764 335679999999999 999999999999999999999999998
Q ss_pred EEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeee
Q psy15549 228 GILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTF 307 (621)
Q Consensus 228 ~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 307 (621)
..+..+. .+.++.+. ...+++++.++.+++|+++........... .....+..+.+
T Consensus 165 ~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~ 220 (368)
T 3mmy_A 165 MVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIES---------------------PLKHQHRCVAI 220 (368)
T ss_dssp EEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCC---------------------SCSSCEEEEEE
T ss_pred EEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccc---------------------cccCCCceEEE
Confidence 8887664 56666666 558888999999999999875433221100 00111122222
Q ss_pred cCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEE
Q psy15549 308 SPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAV 387 (621)
Q Consensus 308 spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (621)
.++... ....++++
T Consensus 221 ~~~~~~------------------------------------------------------------------~~~~~~~~ 234 (368)
T 3mmy_A 221 FKDKQN------------------------------------------------------------------KPTGFALG 234 (368)
T ss_dssp EECTTS------------------------------------------------------------------CEEEEEEE
T ss_pred cccCCC------------------------------------------------------------------CCCeEEEe
Confidence 221111 01337888
Q ss_pred EcCCcEEEEeCCCC---ceeEEEeccccc------------ceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCC
Q psy15549 388 ATENNILLYDTQHA---SPFAFIANIHYT------------KLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVP 452 (621)
Q Consensus 388 ~~dg~i~iwd~~~~---~~~~~~~~~h~~------------~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 452 (621)
+.|+.|++||+... ..+..+ .+|.. .|++++|+|+|++|++++.||.|++||+.++++...+..
T Consensus 235 ~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 235 SIEGRVAIHYINPPNPAKDNFTF-KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp ETTSEEEEEESSCSCHHHHSEEE-ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred cCCCcEEEEecCCCCccccceee-eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 89999999999887 445555 34655 799999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCCCCcccCCCcccHHHhc
Q psy15549 453 PSGEESKENDPTKGEPVRSEDKPRSAEQAK 482 (621)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~ 482 (621)
+...+..+.|++++..+++++.++..+.|.
T Consensus 314 ~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 314 LDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp CSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred CCCCceEEEECCCCCeEEEEeccccccccc
Confidence 999999999999999999998887655554
No 106
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=8.6e-32 Score=275.94 Aligned_cols=325 Identities=19% Similarity=0.296 Sum_probs=229.2
Q ss_pred CCCeEEEeccccccCC-----cceEEEEecC----CceEEeeeccCccccc--cceeEEeccccc-----cccceeeccc
Q psy15549 13 RDPVLSVDIQLKQEKD-----NCYRIVTGGA----DSHVFDYLLKIPHRLK--TGKIWYLTERES-----GIANVEFASD 76 (621)
Q Consensus 13 ~~~v~~l~~spd~~~~-----~~~~l~tg~~----dg~v~~~d~~~~~~~~--~~~iw~~~~~~~-----~~~~~~~~~~ 76 (621)
.-|..++.|.|+.... ...+|++|+. ...|.++++..+.... ...-|+-..++. ....+. ...
T Consensus 45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~ 123 (430)
T 2xyi_A 45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIE-IEI 123 (430)
T ss_dssp SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEE-EEE
T ss_pred CCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceE-EEE
Confidence 3478999999986311 1247888765 3566655443111000 000111111100 000111 234
Q ss_pred cccccCcEEEEEEccC-CCEEEEEc-CCceEEEEeccCcccc---ccceecccccccCCCeEEEEECCCCC-EEEEEeCC
Q psy15549 77 LSRHQKAVNVVRFSPN-GELLASGD-DVGKEIWYLTERESGI---ANVEFASDLSRHQKAVNVVRFSPNGE-LLASGDDE 150 (621)
Q Consensus 77 ~~~h~~~V~~l~~spd-g~~las~~-d~~v~iw~~~~~~~~~---~~~~~~~~~~~h~~~V~~i~~sp~g~-~l~s~s~d 150 (621)
...|.+.|++++|+|+ +.+||+++ ++.|++|++....... ........+.+|...|.+++|+|++. +|++|+.|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 5689999999999997 67888888 8889999998631110 01255667789999999999999988 99999999
Q ss_pred CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC---cE
Q psy15549 151 STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP-TSTHLISGSVDNTAIMWDVHKG---KN 226 (621)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-d~~~l~s~~~dg~i~vwd~~~~---~~ 226 (621)
|.|++|++........ .......+.+|...|.+++|+| ++.+|++++.||.|++||++++ +.
T Consensus 204 g~i~vwd~~~~~~~~~--------------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~ 269 (430)
T 2xyi_A 204 HTICLWDINATPKEHR--------------VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP 269 (430)
T ss_dssp SCEEEEETTSCCBGGG--------------EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSC
T ss_pred CeEEEEeCCCCCCCCc--------------eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Confidence 9999999987542110 0111255678999999999999 6789999999999999999987 57
Q ss_pred EEEeccCCcceEEEEEcCCCC-EEEEEeCCCcEEEEEccCc-eeeeecccCCCCCCCccccccccccccccCCcccceee
Q psy15549 227 LGILTEHKKFVQGVAWDPKNQ-YVATLSSDRSLRTYSIQSK-KVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRR 304 (621)
Q Consensus 227 ~~~~~~~~~~v~~l~~sp~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 304 (621)
+..+..|...|.+++|+|++. +|++|+.||.|++||+++. ..+..+. .+...|.+
T Consensus 270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-----------------------~h~~~v~~ 326 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-----------------------SHKDEIFQ 326 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-----------------------CCSSCEEE
T ss_pred eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-----------------------cCCCCEEE
Confidence 777888999999999999987 6889999999999999873 3344332 34556789
Q ss_pred eeecCCCCe-EEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcE
Q psy15549 305 LTFSPDGQL-LIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRI 383 (621)
Q Consensus 305 ~~~spdg~~-l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (621)
++|+|+++. |++++
T Consensus 327 i~~sp~~~~~l~s~~----------------------------------------------------------------- 341 (430)
T 2xyi_A 327 VQWSPHNETILASSG----------------------------------------------------------------- 341 (430)
T ss_dssp EEECSSCTTEEEEEE-----------------------------------------------------------------
T ss_pred EEECCCCCCEEEEEe-----------------------------------------------------------------
Confidence 999999864 45444
Q ss_pred EEEEEcCCcEEEEeCCC--------------CceeEEEecccccceEEEEEcCCCC-eEEEEeCCCcEEEEEecCCcC
Q psy15549 384 VIAVATENNILLYDTQH--------------ASPFAFIANIHYTKLTDITWSSDGK-VLIASSTDGYCSIISFGDNEI 446 (621)
Q Consensus 384 l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~s~dg~i~iw~~~~~~~ 446 (621)
.|+.|+|||+.. ...+... .+|...|++++|+|+++ +|++++.||.|++|++....+
T Consensus 342 -----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~ 413 (430)
T 2xyi_A 342 -----TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413 (430)
T ss_dssp -----TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC-CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred -----CCCcEEEEeCCCCccccCccccccCCcceEEEc-CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence 444555555443 1233333 56889999999999999 899999999999999986543
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.3e-32 Score=277.97 Aligned_cols=296 Identities=17% Similarity=0.210 Sum_probs=233.4
Q ss_pred cEEEEEEccCCCEEEE-Ec-CCceEEEEeccCccccccceecccccccCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcc
Q psy15549 83 AVNVVRFSPNGELLAS-GD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP-NGELLASGDDESTIIVWKQK 159 (621)
Q Consensus 83 ~V~~l~~spdg~~las-~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp-~g~~l~s~s~dg~i~vwd~~ 159 (621)
....++++|+...++. ++ ++.|+||++...+.. ......+.+|...|++++|+| ++++|++|+.||.|++||+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~---~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV---DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC---CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC---CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 4456888988765554 44 889999998664321 123445778999999999999 99999999999999999999
Q ss_pred CCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEe--ccCCcc
Q psy15549 160 TDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTS-THLISGSVDNTAIMWDVHKGKNLGIL--TEHKKF 236 (621)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~-~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~ 236 (621)
++....... .....+.+|...|.+++|+|++ ++|++++.||.|++||+.+++.+..+ ..|...
T Consensus 113 ~~~~~~~~~--------------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 113 DGGLVLPLR--------------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp TTCCSSCBC--------------SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred CCCCccccC--------------CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 875432110 0136678999999999999998 69999999999999999999999999 789999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeec-ccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEE
Q psy15549 237 VQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRA-CRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLI 315 (621)
Q Consensus 237 v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~ 315 (621)
|.+++|+|++++|++++.||.|++||+++++.+..+ ..+. ...+.+++|+|++.+|+
T Consensus 179 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~ 236 (402)
T 2aq5_A 179 IYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE----------------------GTRPVHAVFVSEGKILT 236 (402)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSC----------------------SSSCCEEEECSTTEEEE
T ss_pred eEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCC----------------------CCcceEEEEcCCCcEEE
Confidence 999999999999999999999999999998887766 2221 11257889999888777
Q ss_pred eccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEE
Q psy15549 316 APSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILL 395 (621)
Q Consensus 316 ~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 395 (621)
++.. .+.|+.|++
T Consensus 237 ~g~~-------------------------------------------------------------------~~~d~~i~i 249 (402)
T 2aq5_A 237 TGFS-------------------------------------------------------------------RMSERQVAL 249 (402)
T ss_dssp EEEC-------------------------------------------------------------------TTCCEEEEE
T ss_pred Eecc-------------------------------------------------------------------CCCCceEEE
Confidence 6520 025788999
Q ss_pred EeCCCCce-eEEEecccccceEEEEEcCCCCeEEE-EeCCCcEEEEEecCCcC-CcccCC--CCCcccccCCCCCCCCcc
Q psy15549 396 YDTQHASP-FAFIANIHYTKLTDITWSSDGKVLIA-SSTDGYCSIISFGDNEI-GIPYVP--PSGEESKENDPTKGEPVR 470 (621)
Q Consensus 396 wd~~~~~~-~~~~~~~h~~~v~~~~~spdg~~l~s-~s~dg~i~iw~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~ 470 (621)
||+.+++. +......|...|.+++|+|++++|++ ++.||.|++|++.+++. ...+.. +...+..+.++|++..++
T Consensus 250 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp EETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred EcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccce
Confidence 99988764 44443357788999999999999975 45799999999998873 344433 457788899999998877
Q ss_pred cCCCcccHHHhcccCc
Q psy15549 471 SEDKPRSAEQAKGEGK 486 (621)
Q Consensus 471 s~~~~~~~~~w~~~~~ 486 (621)
+ .++.+++|++...
T Consensus 330 s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 330 N--KCEIARFYKLHER 343 (402)
T ss_dssp G--GTEEEEEEEEETT
T ss_pred e--cceeEEEEEcCCC
Confidence 6 4558889987654
No 108
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.3e-32 Score=275.24 Aligned_cols=334 Identities=12% Similarity=0.099 Sum_probs=209.9
Q ss_pred ceeeecCCCCeEEEec---cccccCCcceEEEEecCCceEEeeeccCcccc-----ccceeEEecccccccc-ce--eec
Q psy15549 6 PEISWHNRDPVLSVDI---QLKQEKDNCYRIVTGGADSHVFDYLLKIPHRL-----KTGKIWYLTERESGIA-NV--EFA 74 (621)
Q Consensus 6 ~~~~~~h~~~v~~l~~---spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~-----~~~~iw~~~~~~~~~~-~~--~~~ 74 (621)
......-....+++.| +|+.. .|++++.++.|.+|+....... ....+|.+..+..... .. ...
T Consensus 8 ~~~~lpl~~~p~~~~w~~~~~~~~-----~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (393)
T 4gq1_A 8 NQYQLPLNVRPYTTTWCSQSPSCS-----NLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCS 82 (393)
T ss_dssp EEEECCTTCCEEEEEECTTSGGGT-----TEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCE
T ss_pred CceEecCCCCCeEEEEeCCCCCCC-----CEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCcc
Confidence 3344444455666666 45554 4444455778987765432221 1112222222111000 00 001
Q ss_pred cccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECC--------CCCEEE
Q psy15549 75 SDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP--------NGELLA 145 (621)
Q Consensus 75 ~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp--------~g~~l~ 145 (621)
.....|...+....+++++.+||+++ |+.|+||+...+... .......+.+|.+.|++++|+| ++++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~--~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~la 160 (393)
T 4gq1_A 83 YSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETII--TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIA 160 (393)
T ss_dssp EECC----------CCEEEEEEEEEETTSCEEEEEEETTEEE--EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEE
T ss_pred ccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccc--eeeeecccCCCCCceEEEEEccccccccCCCCCEEE
Confidence 11234455555566677888999988 889999999876321 1134566889999999999997 788999
Q ss_pred EEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCC
Q psy15549 146 SGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTS-THLISGSVDNTAIMWDVHKG 224 (621)
Q Consensus 146 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~-~~l~s~~~dg~i~vwd~~~~ 224 (621)
+|+.|++|+|||+.++... ..+..|...|.+++|+|++ .+|++++.|+.|++||+.++
T Consensus 161 s~s~D~tv~~Wd~~~~~~~---------------------~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~ 219 (393)
T 4gq1_A 161 SVGDDCTLIIWRLTDEGPI---------------------LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN 219 (393)
T ss_dssp EEETTSEEEEEEEETTEEE---------------------EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred EEECCCeEEEEECCCCcee---------------------eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence 9999999999999877643 5566788999999999987 58999999999999999887
Q ss_pred cEEEEe-------------------------ccCCcceEEEEEc-CCCCEEEEEeCCCcEEEEEccCceeeeecccCCCC
Q psy15549 225 KNLGIL-------------------------TEHKKFVQGVAWD-PKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLP 278 (621)
Q Consensus 225 ~~~~~~-------------------------~~~~~~v~~l~~s-p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 278 (621)
+..... .+|...+.++.|+ |+++.|++++.|+.+++||+..+.....+..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~--- 296 (393)
T 4gq1_A 220 LSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS--- 296 (393)
T ss_dssp C----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------
T ss_pred cccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee---
Confidence 643321 3567778899987 79999999999999999999887765544322
Q ss_pred CCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceee
Q psy15549 279 VDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVA 358 (621)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (621)
...+..+.+.|+++.+.... .. ..
T Consensus 297 --------------------~~~~~~~~~~~~~~~~~~~~-----~~-------------------------------~~ 320 (393)
T 4gq1_A 297 --------------------TMKLGPKNLLPNVQGISLFP-----SL-------------------------------LG 320 (393)
T ss_dssp ---------------------------CCSCSEEEECSSC-----CS-------------------------------SC
T ss_pred --------------------cCccccEEEccccccccccC-----cc-------------------------------ee
Confidence 22335566666655443322 00 00
Q ss_pred eeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEE
Q psy15549 359 VKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSI 438 (621)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~i 438 (621)
..+.| ..++.++++++.||.|++||+.+++....+. .|..+|++++|+|||++||+++.+| +.+
T Consensus 321 ~~~~~--------------~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as~~G-v~l 384 (393)
T 4gq1_A 321 ACPHP--------------RYMDYFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIATEGS-VLL 384 (393)
T ss_dssp CEECS--------------SCTTEEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEESSE-EEE
T ss_pred EEEcc--------------CCCCEEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCC-eEE
Confidence 01111 0122345566679999999999998887774 5888999999999999999998766 667
Q ss_pred EEec
Q psy15549 439 ISFG 442 (621)
Q Consensus 439 w~~~ 442 (621)
|++.
T Consensus 385 vrL~ 388 (393)
T 4gq1_A 385 TRLM 388 (393)
T ss_dssp EEEG
T ss_pred EEEe
Confidence 7664
No 109
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.3e-32 Score=277.68 Aligned_cols=273 Identities=19% Similarity=0.312 Sum_probs=229.4
Q ss_pred ccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q psy15549 78 SRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVW 156 (621)
Q Consensus 78 ~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vw 156 (621)
.+|...|.+++| ++++|++|+ |+.|++|++..+ .....+.+|...|.+++| ++++|++|+.||.|++|
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL-------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 198 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC-------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC-------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEE
Confidence 456778998877 789999988 889999999876 567778899999999999 78899999999999999
Q ss_pred EccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE---EEeccC
Q psy15549 157 KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNL---GILTEH 233 (621)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~ 233 (621)
|+.+++.+ ..+.+|...|.+++|++ .+|++|+.||.|++||+.++... ..+.+|
T Consensus 199 d~~~~~~~---------------------~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 255 (435)
T 1p22_A 199 DVNTGEML---------------------NTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255 (435)
T ss_dssp ESSSCCEE---------------------EEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred ECCCCcEE---------------------EEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence 99988753 66778999999999974 59999999999999999987765 667889
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCe
Q psy15549 234 KKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQL 313 (621)
Q Consensus 234 ~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~ 313 (621)
...|.+++| ++++|++++.||.|++||+++++.+..+..+ ...|.++.|+ +
T Consensus 256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-----------------------~~~v~~~~~~--~-- 306 (435)
T 1p22_A 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH-----------------------KRGIACLQYR--D-- 306 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECC-----------------------SSCEEEEEEE--T--
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC-----------------------CCcEEEEEeC--C--
Confidence 999999999 6899999999999999999998876665422 2223444441 1
Q ss_pred EEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcE
Q psy15549 314 LIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNI 393 (621)
Q Consensus 314 l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 393 (621)
..+++++.||.|
T Consensus 307 --------------------------------------------------------------------~~l~~g~~dg~i 318 (435)
T 1p22_A 307 --------------------------------------------------------------------RLVVSGSSDNTI 318 (435)
T ss_dssp --------------------------------------------------------------------TEEEEEETTSCE
T ss_pred --------------------------------------------------------------------CEEEEEeCCCeE
Confidence 456777789999
Q ss_pred EEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCc---------CCcccCCCCCcccccCCCC
Q psy15549 394 LLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNE---------IGIPYVPPSGEESKENDPT 464 (621)
Q Consensus 394 ~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~---------~~~~~~~~~~~~~~~~~~~ 464 (621)
++||+.+++.+..+ .+|...|.+++| ++.+|++|+.||.|++||+.++. ....+..|...+..+.+
T Consensus 319 ~iwd~~~~~~~~~~-~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-- 393 (435)
T 1p22_A 319 RLWDIECGACLRVL-EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-- 393 (435)
T ss_dssp EEEETTTCCEEEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--
T ss_pred EEEECCCCCEEEEE-eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--
Confidence 99999999998888 469999999999 78899999999999999998776 66777888888888887
Q ss_pred CCCCcccCCCcccHHHhcccCc
Q psy15549 465 KGEPVRSEDKPRSAEQAKGEGK 486 (621)
Q Consensus 465 ~~~~~~s~~~~~~~~~w~~~~~ 486 (621)
++..+++++.|+.+++|++...
T Consensus 394 ~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 394 DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp CSSCEEECCSSSEEEEEC----
T ss_pred CCCEEEEEeCCCEEEEEECCCC
Confidence 7888999999999999997654
No 110
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-32 Score=297.13 Aligned_cols=257 Identities=21% Similarity=0.360 Sum_probs=210.5
Q ss_pred eeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 7 EISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 7 ~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
.+..+|.++|++++|+|+++ +|++|+.||.|+ ||++..+. ......+.+|.+.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~-----~latg~~dg~I~--------------vwd~~~~~-----~~~~~~l~~h~~~V~~ 58 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGK-----RLATCSSDKTIK--------------IFEVEGET-----HKLIDTLTGHEGPVWR 58 (753)
T ss_dssp -----CCCCEEEECCCSSSC-----CEEEEETTTEEE--------------EEEEETTE-----EEEEEEECCCSSCEEE
T ss_pred eecccCcceeEEEEECCCCC-----eEEEEECCCcEE--------------EEecCCCC-----CccceeccCCcCceEE
Confidence 46678999999999999998 999999999999 99887432 1234568899999999
Q ss_pred EEEccC--CCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCC--CCEEEEEeCCCcEEEEEccCC
Q psy15549 87 VRFSPN--GELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN--GELLASGDDESTIIVWKQKTD 161 (621)
Q Consensus 87 l~~spd--g~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~--g~~l~s~s~dg~i~vwd~~~~ 161 (621)
++|+|+ +++|++|+ |+.|++|++..+. ......+.+|...|.+++|+|+ +++|++|+.||.|++||+.+.
T Consensus 59 l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~-----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 59 VDWAHPKFGTILASCSYDGKVLIWKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp EEECCTTSCSEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred EEecCCCCCCEEEEEeCCCeEEEEECCCCc-----ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence 999998 99999988 8899999998762 2356777889999999999999 999999999999999999887
Q ss_pred CCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC-------------CCCEEEEEeCCCeEEEEECCCC----
Q psy15549 162 QDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP-------------TSTHLISGSVDNTAIMWDVHKG---- 224 (621)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-------------d~~~l~s~~~dg~i~vwd~~~~---- 224 (621)
.... ...+.+|...|.+++|+| ++.+|++|+.||.|++||++++
T Consensus 134 ~~~~-------------------~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~ 194 (753)
T 3jro_A 134 GTTS-------------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194 (753)
T ss_dssp SCCC-------------------CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE
T ss_pred CCcc-------------------eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc
Confidence 5432 245678999999999999 5899999999999999999887
Q ss_pred cEEEEeccCCcceEEEEEcCC---CCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccc
Q psy15549 225 KNLGILTEHKKFVQGVAWDPK---NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSF 301 (621)
Q Consensus 225 ~~~~~~~~~~~~v~~l~~sp~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (621)
.....+.+|...|.+++|+|+ +++|++++.||.|++||+.++...... .......+...
T Consensus 195 ~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~------------------~~~~~~~~~~~ 256 (753)
T 3jro_A 195 VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK------------------TLLKEEKFPDV 256 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBC------------------CBSSSSCCSSC
T ss_pred eeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCccee------------------EEeccCCCCCc
Confidence 556777899999999999999 899999999999999999886421111 11122345667
Q ss_pred eeeeeecCCCCeEEeccccccCCCCCCcceeee
Q psy15549 302 FRRLTFSPDGQLLIAPSGCLENSDSTRKPISVT 334 (621)
Q Consensus 302 i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~ 334 (621)
|.+++|+|+|+++++++ .|+.+++|++.
T Consensus 257 v~~l~~spdg~~l~s~s-----~Dg~I~vwd~~ 284 (753)
T 3jro_A 257 LWRASWSLSGNVLALSG-----GDNKVTLWKEN 284 (753)
T ss_dssp CCCEEECTTTCCEEEEC-----SSSCEECCBCC
T ss_pred eEEEEEcCCCCEEEEEc-----CCCEEEEEecC
Confidence 88999999999999887 67777777654
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-32 Score=275.10 Aligned_cols=267 Identities=16% Similarity=0.134 Sum_probs=208.9
Q ss_pred ccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q psy15549 78 SRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVW 156 (621)
Q Consensus 78 ~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vw 156 (621)
+.-...|.+++|||||+++|+++ |+.|+ +.. ....+.+|...|.+++|+|+| .++.+.+|
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~----------~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~ 72 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPK----------YAKDINCNSKNLFHVKEFPLE-------FENKLDFE 72 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EEC----------CCSCCSSBGGGTEEEEEECCC-------CCCTTTTS
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--ccc----------ccceecCCCccEEEEEECCCC-------CcceEEEE
Confidence 34457899999999999999999 66777 532 234457999999999999998 45655555
Q ss_pred EccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCc-
Q psy15549 157 KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKK- 235 (621)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~- 235 (621)
+....... ...|...|.+++|+|+|.+||+++.||.|++||... ++..+. |..
T Consensus 73 ~~~~~~~~-----------------------~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~ 126 (588)
T 2j04_A 73 LAQQNGLL-----------------------NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGN 126 (588)
T ss_dssp CCCSSCSS-----------------------TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSC
T ss_pred eCCCceEe-----------------------ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCc
Confidence 54332211 114578899999999999999999999999999544 666666 665
Q ss_pred ----ceEEEEEcCCCCEEEEEeCCCcEEEEEccCcee-------eeecccCCCCCCCccccccccccccccCCcccceee
Q psy15549 236 ----FVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKV-------ISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRR 304 (621)
Q Consensus 236 ----~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 304 (621)
.|.+++|||||++|++|+.||+|+|||+.++.. +..+..+ ...|...|.+
T Consensus 127 ~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~-------------------~~gh~~~V~s 187 (588)
T 2j04_A 127 LSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS-------------------DAGSKDWVTH 187 (588)
T ss_dssp STTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS-------------------CTTCCCCEEE
T ss_pred cccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecc-------------------cccccccEEE
Confidence 499999999999999999999999999988642 2332111 1234567888
Q ss_pred eeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEE
Q psy15549 305 LTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIV 384 (621)
Q Consensus 305 ~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 384 (621)
++|+||| ++++
T Consensus 188 VawSPdg--Laas------------------------------------------------------------------- 198 (588)
T 2j04_A 188 IVWYEDV--LVAA------------------------------------------------------------------- 198 (588)
T ss_dssp EEEETTE--EEEE-------------------------------------------------------------------
T ss_pred EEEcCCc--EEEE-------------------------------------------------------------------
Confidence 8888887 4443
Q ss_pred EEEEcCCcEEEEeCCCCcee---EEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccC
Q psy15549 385 IAVATENNILLYDTQHASPF---AFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKEN 461 (621)
Q Consensus 385 ~~~~~dg~i~iwd~~~~~~~---~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 461 (621)
+.|+.|++||+..+... ..+..+|...|.+++|+ |+.||+++ +|.|++|++.++.......+|...+..+.
T Consensus 199 ---s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va 272 (588)
T 2j04_A 199 ---LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIP 272 (588)
T ss_dssp ---ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEE
T ss_pred ---eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEE
Confidence 36788999998887742 44544688899999999 68999997 69999999998887444447888899899
Q ss_pred C--CCCCCCcccCCCcccHHHhccc
Q psy15549 462 D--PTKGEPVRSEDKPRSAEQAKGE 484 (621)
Q Consensus 462 ~--~~~~~~~~s~~~~~~~~~w~~~ 484 (621)
+ ++++..++++..+|. ++|...
T Consensus 273 ~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 273 LNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ETTCSSCEEEEECSSCEE-EEEESS
T ss_pred eeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9 999999999999999 999865
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.8e-30 Score=258.75 Aligned_cols=303 Identities=14% Similarity=0.095 Sum_probs=213.3
Q ss_pred ecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEE
Q psy15549 10 WHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRF 89 (621)
Q Consensus 10 ~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 89 (621)
..|.++|++++|+||++ +||+|+.++ ++ ||++....... ..+...+..+++
T Consensus 16 ~~h~~~V~~v~fs~dg~-----~la~g~~~~-~~--------------iw~~~~~~~~~---------~~~~~~~~~~~~ 66 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQS-----CLILSTLKS-FE--------------IYNVHPVAHIM---------SQEMRHLSKVRM 66 (355)
T ss_dssp ---CCCCCEEEECTTSS-----EEEEECSSE-EE--------------EEEETTEEEEE---------EEECSCCCEEEE
T ss_pred ccCCCceEEEEECCCCC-----EEEEEcCCE-EE--------------EEecCCcceee---------eeecCCeEEEEE
Confidence 56899999999999998 999999886 67 88877553321 122235888899
Q ss_pred ccCCCEEEE-Ec-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCC-CCCCC
Q psy15549 90 SPNGELLAS-GD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTD-QDLPE 166 (621)
Q Consensus 90 spdg~~las-~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~-~~~~~ 166 (621)
.+++++++. ++ ++.|++||...+ ..+..+. |...|.+++|+++. ++++ .|+.|++||+.+. +.+..
T Consensus 67 ~~~~~~~~~~~~~d~~v~iWd~~~~-------~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 67 LHRTNYVAFVTGVKEVVHIWDDVKK-------QDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITD 135 (355)
T ss_dssp CTTSSEEEEECSSTTEEEEEETTTT-------EEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSC
T ss_pred cCCCCEEEEEECCccEEEEEECCCC-------cEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEE
Confidence 998888854 44 779999999876 4455554 66789999998864 4444 3789999999988 55433
Q ss_pred CCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEE--EeCCCeEEEEECCCCc----------------EEE
Q psy15549 167 FPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLIS--GSVDNTAIMWDVHKGK----------------NLG 228 (621)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s--~~~dg~i~vwd~~~~~----------------~~~ 228 (621)
+ .. ....+++++ .++++ |+.+|.|++||+.++. ++.
T Consensus 136 ~---------------------~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~ 189 (355)
T 3vu4_A 136 D---------------------IR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV 189 (355)
T ss_dssp C---------------------EE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCE
T ss_pred e---------------------cc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccE
Confidence 3 11 334556666 56666 5789999999998865 267
Q ss_pred EeccCCcceEEEEEcCCCCEEEEEeCCCc-EEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeee
Q psy15549 229 ILTEHKKFVQGVAWDPKNQYVATLSSDRS-LRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTF 307 (621)
Q Consensus 229 ~~~~~~~~v~~l~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 307 (621)
.+.+|...|.+++|+|+|++|++|+.|++ |++||+++++.+..+.. ..+...|.+++|
T Consensus 190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~---------------------g~h~~~v~~~~~ 248 (355)
T 3vu4_A 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRR---------------------GLDRADVVDMKW 248 (355)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEEC---------------------TTCCSCEEEEEE
T ss_pred EEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc---------------------CCCCCcEEEEEE
Confidence 88899999999999999999999999998 99999999988877641 114456899999
Q ss_pred cCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEE
Q psy15549 308 SPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAV 387 (621)
Q Consensus 308 spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (621)
+|+|++|++++ .|+.+++|++..... .....+... +.|..+
T Consensus 249 s~~~~~l~s~s-----~d~~v~iw~~~~~~~-----~~~~~~~~~--------~~~~~~--------------------- 289 (355)
T 3vu4_A 249 STDGSKLAVVS-----DKWTLHVFEIFNDQD-----NKRHALKGW--------INMKYF--------------------- 289 (355)
T ss_dssp CTTSCEEEEEE-----TTCEEEEEESSCCSC-----CCSEETTTT--------EECCCC---------------------
T ss_pred CCCCCEEEEEE-----CCCEEEEEEccCCCC-----cccccccce--------eecccc---------------------
Confidence 99999999998 889999998753210 000011000 000000
Q ss_pred EcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCC
Q psy15549 388 ATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIG 447 (621)
Q Consensus 388 ~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~ 447 (621)
+. .|.. ....+...+......++|++||++|++++.||.+++|++..++..
T Consensus 290 --~~---~~~~----~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 290 --QS---EWSL----CNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp --CC---SSCS----EEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred --cc---ccce----eEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence 00 0100 011111122334577999999999999999999999999876543
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=6.9e-30 Score=262.55 Aligned_cols=343 Identities=11% Similarity=0.065 Sum_probs=243.7
Q ss_pred CCCCeEEEe---ccccccCCcceEEEEecCCc--eEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 12 NRDPVLSVD---IQLKQEKDNCYRIVTGGADS--HVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 12 h~~~v~~l~---~spd~~~~~~~~l~tg~~dg--~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
....+..++ |+|++. .++..+..+ ...+|- .......+.||.+..... .+.....+..+ ..+.+
T Consensus 59 ~~~g~~~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~d~~~~---~~~~~~~~~~~-~~~~~ 127 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKE-----IELKLSSPGFQNSSYRI--RKPEELNEKLIALDKEGI---THRFISRFKTG-FQPKS 127 (433)
T ss_dssp TTEEEEEEEEECCCTTCC-----EEEEEECTTBCCEEEEE--SSGGGGTTCEEECCBTTC---SEEEEEEEECS-SCBCC
T ss_pred cCCccEEEEEeeccCCCc-----EEEEEEccccCcceeee--cccCCCceEEEEECCCCC---cceEEEEEcCC-CCceE
Confidence 445678888 888876 444332211 111110 011111223666554221 11122334333 45669
Q ss_pred EEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCC
Q psy15549 87 VRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLP 165 (621)
Q Consensus 87 l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~ 165 (621)
++|+|++.++++++ ++.|++|++..+... .......+.+|...|.+++|++++.++++++.|+.|++||+.+++.+
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~- 204 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTV--RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK- 204 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEE--EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE-
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEe--eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE-
Confidence 99999777777776 667999999876311 00111145689999999999999999999999999999999887643
Q ss_pred CCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCcEEEEeccCCcceEEEEEcC
Q psy15549 166 EFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISG-SVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDP 244 (621)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp 244 (621)
..+..|...+.+++|+|++++++++ +.++.|++||+.+++.+..+..+ ..+.+++|+|
T Consensus 205 --------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~ 263 (433)
T 3bws_A 205 --------------------ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSK 263 (433)
T ss_dssp --------------------EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECT
T ss_pred --------------------EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcC
Confidence 5556888999999999999988554 47999999999999988887654 5589999999
Q ss_pred CCCEEEEEe--------CCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEe
Q psy15549 245 KNQYVATLS--------SDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIA 316 (621)
Q Consensus 245 ~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~ 316 (621)
++++|++++ .||.|++||+.+++.+..+. +...+.+++|+|+++++++
T Consensus 264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 264 DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG------------------------PPGNKRHIVSGNTENKIYV 319 (433)
T ss_dssp TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE------------------------EEECEEEEEECSSTTEEEE
T ss_pred CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc------------------------CCCCcceEEECCCCCEEEE
Confidence 999999888 48899999999887765542 1234578999999987655
Q ss_pred ccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEc-------
Q psy15549 317 PSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVAT------- 389 (621)
Q Consensus 317 ~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------- 389 (621)
++. .++.+++|+....... ..+ .+...+..+.++| +++.+++++.
T Consensus 320 ~~~----~~~~v~v~d~~~~~~~-------~~~-~~~~~~~~~~~s~----------------dg~~l~~~~~~~~~~~~ 371 (433)
T 3bws_A 320 SDM----CCSKIEVYDLKEKKVQ-------KSI-PVFDKPNTIALSP----------------DGKYLYVSCRGPNHPTE 371 (433)
T ss_dssp EET----TTTEEEEEETTTTEEE-------EEE-ECSSSEEEEEECT----------------TSSEEEEEECCCCCTTT
T ss_pred Eec----CCCEEEEEECCCCcEE-------EEe-cCCCCCCeEEEcC----------------CCCEEEEEecCCCcccc
Confidence 532 7899999987532111 111 1233455666665 6677777765
Q ss_pred --------CCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeC-CCcEEEEEecC
Q psy15549 390 --------ENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASST-DGYCSIISFGD 443 (621)
Q Consensus 390 --------dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~-dg~i~iw~~~~ 443 (621)
||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. |+.|++|+++.
T Consensus 372 ~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 372 GYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ccccccccceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 57999999999998887753 457999999999999998875 99999999863
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4e-31 Score=272.89 Aligned_cols=270 Identities=11% Similarity=0.087 Sum_probs=210.1
Q ss_pred CcEEEEEEccCCCEEEEEcCCceEEEEeccCccc--cccce---------------------------------------
Q psy15549 82 KAVNVVRFSPNGELLASGDDVGKEIWYLTERESG--IANVE--------------------------------------- 120 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~--~~~~~--------------------------------------- 120 (621)
.++.+++|+++|++|+++.++.|++|++..+... ...+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 5789999999999999888999999999877400 00000
Q ss_pred ---------ecccccccCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcc--CCCCCCCCCCCCcccccccccceeeeeee
Q psy15549 121 ---------FASDLSRHQKAVNVVRFSPNGELL-ASGDDESTIIVWKQK--TDQDLPEFPSSNLDEENVNKEHWIVTKIL 188 (621)
Q Consensus 121 ---------~~~~~~~h~~~V~~i~~sp~g~~l-~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (621)
......+|...|.+++|+|++++| ++++.||.|++||+. ++..+ ..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~---------------------~~~ 143 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL---------------------KLR 143 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE---------------------EEE
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee---------------------eee
Confidence 001112455689999999999996 899999999999998 66543 333
Q ss_pred c--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE----EeccCCcceEEEEEcCC---CCEEEEEeCCCcEE
Q psy15549 189 R--GHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLG----ILTEHKKFVQGVAWDPK---NQYVATLSSDRSLR 259 (621)
Q Consensus 189 ~--~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~l~~sp~---~~~l~s~~~dg~i~ 259 (621)
. .|...|++++|+|++++|++|+.+|.|++|++.++.... .+.+|...|.+++|+|+ +++|++++.|+.|+
T Consensus 144 ~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~ 223 (450)
T 2vdu_B 144 KRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIK 223 (450)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEE
T ss_pred ecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEE
Confidence 3 677899999999999999999999999999998876544 67789999999999999 99999999999999
Q ss_pred EEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeee
Q psy15549 260 TYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTR 339 (621)
Q Consensus 260 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~ 339 (621)
+||+.+++.+..+. ..+...|.+++|+ ++++|++++
T Consensus 224 vwd~~~~~~~~~~~----------------------~~h~~~v~~~~~s-d~~~l~s~~--------------------- 259 (450)
T 2vdu_B 224 ISHYPQCFIVDKWL----------------------FGHKHFVSSICCG-KDYLLLSAG--------------------- 259 (450)
T ss_dssp EEEESCTTCEEEEC----------------------CCCSSCEEEEEEC-STTEEEEEE---------------------
T ss_pred EEECCCCceeeeee----------------------cCCCCceEEEEEC-CCCEEEEEe---------------------
Confidence 99999887665531 1345567899999 888887765
Q ss_pred cccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEec----------
Q psy15549 340 ACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN---------- 409 (621)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------- 409 (621)
.|+.|++||+.+++.+..+..
T Consensus 260 -------------------------------------------------~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 290 (450)
T 2vdu_B 260 -------------------------------------------------GDDKIFAWDWKTGKNLSTFDYNSLIKPYLND 290 (450)
T ss_dssp -------------------------------------------------SSSEEEEEETTTCCEEEEEECHHHHGGGCCT
T ss_pred -------------------------------------------------CCCeEEEEECCCCcEeeeecchhhhhhhhhh
Confidence 556667777666666555531
Q ss_pred --------------ccccceEEEEEcCCCCeEEEEe-CCCcEEEEEe--cCC---cCCcccCCCCCcccccCCCCCC
Q psy15549 410 --------------IHYTKLTDITWSSDGKVLIASS-TDGYCSIISF--GDN---EIGIPYVPPSGEESKENDPTKG 466 (621)
Q Consensus 410 --------------~h~~~v~~~~~spdg~~l~s~s-~dg~i~iw~~--~~~---~~~~~~~~~~~~~~~~~~~~~~ 466 (621)
.+...|.+++|+|++++|++++ .|+.|++|++ .++ .....+..+ ..+..+.+++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~ 366 (450)
T 2vdu_B 291 QHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE 366 (450)
T ss_dssp TSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred cccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc
Confidence 1235799999999999999998 8999999999 555 555566666 667777887754
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=1.4e-30 Score=266.95 Aligned_cols=277 Identities=19% Similarity=0.294 Sum_probs=214.1
Q ss_pred eeecCCCCeEEEecccc-ccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccc---cceeeccccccccCc
Q psy15549 8 ISWHNRDPVLSVDIQLK-QEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGI---ANVEFASDLSRHQKA 83 (621)
Q Consensus 8 ~~~~h~~~v~~l~~spd-~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~---~~~~~~~~~~~h~~~ 83 (621)
....|.+.|++++|+|+ +. +||+|+.+|.|+ +|++....... ........+.+|...
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~-----~lat~~~dg~V~--------------vwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 183 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNAC-----VIATKTPSSDVL--------------VFDYTKHPSKPEPSGECQPDLRLRGHQKE 183 (430)
T ss_dssp EEEEESSCCSEEEEETTEEE-----EEEEECSSSCEE--------------EEEGGGSCSSCCTTCCCCCSEEEECCSSC
T ss_pred EEEcCCCcEEEEEECCCCCc-----EEEEECCCCcEE--------------EEECCCcccccCccccCCCcEEecCCCCC
Confidence 45678899999999997 55 999999999999 77776521100 012234567899999
Q ss_pred EEEEEEccCCC-EEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECC-CCCEEEEEeCCCcEEEEEccC
Q psy15549 84 VNVVRFSPNGE-LLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP-NGELLASGDDESTIIVWKQKT 160 (621)
Q Consensus 84 V~~l~~spdg~-~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp-~g~~l~s~s~dg~i~vwd~~~ 160 (621)
|++++|+|++. +|++|+ |+.|++|++.........+.....+.+|...|.+++|+| ++.+|++++.||.|++||+++
T Consensus 184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~ 263 (430)
T 2xyi_A 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 263 (430)
T ss_dssp CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 99999999998 999888 889999999875332222333556778999999999999 778999999999999999998
Q ss_pred CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCC-CcEEEEeccCCcceE
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTST-HLISGSVDNTAIMWDVHK-GKNLGILTEHKKFVQ 238 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~-~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~ 238 (621)
...... ...+..|...|++++|+|++. +|++|+.||.|++||+++ +.++..+..|...|.
T Consensus 264 ~~~~~~------------------~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~ 325 (430)
T 2xyi_A 264 NNTSKP------------------SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF 325 (430)
T ss_dssp SCSSSC------------------SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEE
T ss_pred CCCCcc------------------eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEE
Confidence 742221 245668999999999999887 688999999999999998 567888889999999
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCC-eEEe
Q psy15549 239 GVAWDPKNQ-YVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQ-LLIA 316 (621)
Q Consensus 239 ~l~~sp~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~-~l~~ 316 (621)
+++|+|+++ +|++++.||.|++||+........... ........++....+...|.+++|+|++. +|++
T Consensus 326 ~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 396 (430)
T 2xyi_A 326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED---------AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS 396 (430)
T ss_dssp EEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH---------HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred EEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc---------cccCCcceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence 999999985 689999999999999987321110000 00000011223345667789999999999 7777
Q ss_pred ccccccCCCCCCcceeeee
Q psy15549 317 PSGCLENSDSTRKPISVTH 335 (621)
Q Consensus 317 ~s~~~~~~d~~i~~~~~~~ 335 (621)
++ .|+.+++|++..
T Consensus 397 ~s-----~dg~i~iw~~~~ 410 (430)
T 2xyi_A 397 VS-----EDNIMQVWQMAE 410 (430)
T ss_dssp EE-----TTSEEEEEEECH
T ss_pred EE-----CCCCEEEeEccc
Confidence 77 899999999864
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.5e-31 Score=291.27 Aligned_cols=257 Identities=17% Similarity=0.264 Sum_probs=204.6
Q ss_pred cccccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCC--CCEEEEEeCCC
Q psy15549 75 SDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN--GELLASGDDES 151 (621)
Q Consensus 75 ~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~--g~~l~s~s~dg 151 (621)
..+.+|.+.|++++|+|+|++|++|+ |+.|++|++..+. ......+.+|...|++++|+|+ +++|++|+.||
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 34789999999999999999999988 8889999998542 2566778899999999999987 99999999999
Q ss_pred cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCC--cEE
Q psy15549 152 TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT--STHLISGSVDNTAIMWDVHKG--KNL 227 (621)
Q Consensus 152 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd--~~~l~s~~~dg~i~vwd~~~~--~~~ 227 (621)
.|++||+.++.. .....+.+|...|++++|+|+ +++|++|+.||.|++||+.++ ...
T Consensus 78 ~I~vwd~~~~~~-------------------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 78 KVLIWKEENGRW-------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp CEEEEEEETTEE-------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC
T ss_pred eEEEEECCCCcc-------------------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce
Confidence 999999988641 123667789999999999999 999999999999999999877 334
Q ss_pred EEeccCCcceEEEEEcC-------------CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccc
Q psy15549 228 GILTEHKKFVQGVAWDP-------------KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFH 294 (621)
Q Consensus 228 ~~~~~~~~~v~~l~~sp-------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (621)
..+..|...|.+++|+| ++.+|++|+.||.|++||++++...... ...
T Consensus 139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~-------------------~~~ 199 (753)
T 3jro_A 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL-------------------EST 199 (753)
T ss_dssp EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEE-------------------EEE
T ss_pred eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccccee-------------------eee
Confidence 56678999999999999 5899999999999999999876321111 001
Q ss_pred cCCcccceeeeeecCC---CCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCC
Q psy15549 295 DDTMKSFFRRLTFSPD---GQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPS 371 (621)
Q Consensus 295 ~~~~~~~i~~~~~spd---g~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (621)
...+...|.+++|+|+ ++++++
T Consensus 200 ~~~h~~~V~~l~~sp~~~~~~~l~s------------------------------------------------------- 224 (753)
T 3jro_A 200 LEGHSDWVRDVAWSPTVLLRSYLAS------------------------------------------------------- 224 (753)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEE-------------------------------------------------------
T ss_pred ecCCCCcEEEEEeccCCCCCCEEEE-------------------------------------------------------
Confidence 1234556788888888 555554
Q ss_pred CCCCCccCCCcEEEEEEcCCcEEEEeCCCCce-----eEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCc
Q psy15549 372 DDKPLFKLPYRIVIAVATENNILLYDTQHASP-----FAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNE 445 (621)
Q Consensus 372 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~ 445 (621)
++.||.|++||+.++.. .... ..|...|++++|+|+|++|++++.||.|++|++..+.
T Consensus 225 ---------------~s~Dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 225 ---------------VSQDRTCIIWTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ---------------EESSSCEEEEEESSSSSCCBCCBSSS-SCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ---------------EecCCEEEEecCCCCCCcceeEEecc-CCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 44677788888776531 1111 2478899999999999999999999999999998654
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=6.2e-30 Score=259.09 Aligned_cols=278 Identities=15% Similarity=0.168 Sum_probs=218.6
Q ss_pred eEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCCEE-EEEc-CCceEEEE
Q psy15549 31 YRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELL-ASGD-DVGKEIWY 108 (621)
Q Consensus 31 ~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~-d~~v~iw~ 108 (621)
.++++++.|+.|+ +||+.+++... .+..|. .+.+++|+|+|++| ++++ ++.|++|+
T Consensus 3 ~l~vs~~~d~~v~--------------v~d~~~~~~~~-------~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d 60 (391)
T 1l0q_A 3 FAYIANSESDNIS--------------VIDVTSNKVTA-------TIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIID 60 (391)
T ss_dssp EEEEEETTTTEEE--------------EEETTTTEEEE-------EEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred EEEEEcCCCCEEE--------------EEECCCCeEEE-------EeecCC-CcceEEECCCCCEEEEECCCCCeEEEEE
Confidence 4889999999999 88887665432 255554 58999999999987 5554 88999999
Q ss_pred eccCccccccceecccccccCCCeEEEEECCCCCEEEE-EeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeee
Q psy15549 109 LTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLAS-GDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKI 187 (621)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (621)
+..+ +....+..+. .+.+++|+|++++|+. ++.++.|++||+.+++.+ ..
T Consensus 61 ~~~~-------~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~---------------------~~ 111 (391)
T 1l0q_A 61 TATN-------NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA---------------------GT 111 (391)
T ss_dssp TTTT-------EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE---------------------EE
T ss_pred CCCC-------eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEE---------------------EE
Confidence 9876 4455555444 8999999999998765 456799999999887643 23
Q ss_pred ecCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEE-EEEeCCCcEEEEEccC
Q psy15549 188 LRGHLEDVYDISWSPTSTHL-ISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYV-ATLSSDRSLRTYSIQS 265 (621)
Q Consensus 188 ~~~~~~~v~~i~~spd~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~~~dg~i~iwd~~~ 265 (621)
+. +...+.+++|+|++++| ++++.++.|++||+.+++.+..+..+ ..+.+++|+|++++| ++++.++.|++||+++
T Consensus 112 ~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~ 189 (391)
T 1l0q_A 112 VK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT 189 (391)
T ss_dssp EE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred Ee-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 33 34568999999999977 67888999999999999988888665 456899999999987 5667789999999999
Q ss_pred ceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCC
Q psy15549 266 KKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKP 345 (621)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~ 345 (621)
++.+..+. +...+.+++|+|+|+++++++. +
T Consensus 190 ~~~~~~~~------------------------~~~~~~~~~~~~~g~~l~~~~~-----~-------------------- 220 (391)
T 1l0q_A 190 NSVIDTVK------------------------VEAAPSGIAVNPEGTKAYVTNV-----D-------------------- 220 (391)
T ss_dssp TEEEEEEE------------------------CSSEEEEEEECTTSSEEEEEEE-----C--------------------
T ss_pred CeEEEEEe------------------------cCCCccceEECCCCCEEEEEec-----C--------------------
Confidence 88766553 1234578899999888876541 0
Q ss_pred ceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCC
Q psy15549 346 AVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGK 425 (621)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~ 425 (621)
..++.|++||+.+++.+..+.. | ..+.+++|+|+|+
T Consensus 221 ------------------------------------------~~~~~v~~~d~~~~~~~~~~~~-~-~~~~~~~~s~dg~ 256 (391)
T 1l0q_A 221 ------------------------------------------KYFNTVSMIDTGTNKITARIPV-G-PDPAGIAVTPDGK 256 (391)
T ss_dssp ------------------------------------------SSCCEEEEEETTTTEEEEEEEC-C-SSEEEEEECTTSS
T ss_pred ------------------------------------------cCCCcEEEEECCCCeEEEEEec-C-CCccEEEEccCCC
Confidence 0468999999999988887753 4 4589999999999
Q ss_pred eE-EEEeCCCcEEEEEecCCcCCcccCCCC
Q psy15549 426 VL-IASSTDGYCSIISFGDNEIGIPYVPPS 454 (621)
Q Consensus 426 ~l-~s~s~dg~i~iw~~~~~~~~~~~~~~~ 454 (621)
+| ++++.|+.|++||+.++++...+..+.
T Consensus 257 ~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 257 KVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred EEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 87 566889999999999988777665543
No 118
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=8.8e-31 Score=260.50 Aligned_cols=268 Identities=19% Similarity=0.211 Sum_probs=211.7
Q ss_pred ccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC
Q psy15549 123 SDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP 202 (621)
Q Consensus 123 ~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 202 (621)
..+.+|...|++++|+|++++|++|+.||.|++||+.++... +.....+.+|...|++++|+|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~ 67 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN-----------------WELSDSWRAHDSSIVAIDWAS 67 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC-----------------EEEEEEEECCSSCEEEEEECC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc-----------------ceecceeccCCCcEEEEEEcC
Confidence 346789999999999999999999999999999999876532 123466789999999999999
Q ss_pred --CCCEEEEEeCCCeEEEEECCCC---------cEEEEeccCCcceEEEEEcCC--CCEEEEEeCCCcEEEEEccCceee
Q psy15549 203 --TSTHLISGSVDNTAIMWDVHKG---------KNLGILTEHKKFVQGVAWDPK--NQYVATLSSDRSLRTYSIQSKKVI 269 (621)
Q Consensus 203 --d~~~l~s~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~l~~sp~--~~~l~s~~~dg~i~iwd~~~~~~~ 269 (621)
++++|++++.||.|++||+.++ +.+..+..|...|.+++|+|+ +++|++++.||.|++||+++++.+
T Consensus 68 ~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCT
T ss_pred CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHh
Confidence 6999999999999999999887 567888899999999999999 999999999999999999887654
Q ss_pred eecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceec
Q psy15549 270 SRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349 (621)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 349 (621)
..+..... ..........+...+.+++|+|+.
T Consensus 148 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~p~~-------------------------------------- 179 (351)
T 3f3f_A 148 RSWTLTSE----------MKVLSIPPANHLQSDFCLSWCPSR-------------------------------------- 179 (351)
T ss_dssp TCCEEEEE----------EESCSCCCSSCSCCCEEEEECCCS--------------------------------------
T ss_pred cccccccc----------ccccccccCCcccceeEEEeccCC--------------------------------------
Confidence 43321000 000000111223334445554430
Q ss_pred CCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCce--eEEEecccccceEEEEEcCCC---
Q psy15549 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASP--FAFIANIHYTKLTDITWSSDG--- 424 (621)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~h~~~v~~~~~spdg--- 424 (621)
..+..+++++.++.+.+|+...+.. +..+ .+|...|++++|+|++
T Consensus 180 -----------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 180 -----------------------------FSPEKLAVSALEQAIIYQRGKDGKLHVAAKL-PGHKSLIRSISWAPSIGRW 229 (351)
T ss_dssp -----------------------------SSCCEEEEEETTEEEEEEECTTSCEEEEEEC-CCCCSCEEEEEECCCSSCS
T ss_pred -----------------------------CCCcEEEEecCCCcEEEEccCCCceeeeeec-CCCCcceeEEEECCCCCCc
Confidence 0135566677888887887777764 3334 4699999999999998
Q ss_pred -CeEEEEeCCCcEEEEEecCC----------------------------------------------cCCcccCCCCCcc
Q psy15549 425 -KVLIASSTDGYCSIISFGDN----------------------------------------------EIGIPYVPPSGEE 457 (621)
Q Consensus 425 -~~l~s~s~dg~i~iw~~~~~----------------------------------------------~~~~~~~~~~~~~ 457 (621)
++|++++.||.|++||+.++ +....+..|...+
T Consensus 230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 309 (351)
T 3f3f_A 230 YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV 309 (351)
T ss_dssp SEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCE
T ss_pred ceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE
Confidence 89999999999999999875 4556677788899
Q ss_pred cccCCCCCCCCcccCCCcccHHHhcccC
Q psy15549 458 SKENDPTKGEPVRSEDKPRSAEQAKGEG 485 (621)
Q Consensus 458 ~~~~~~~~~~~~~s~~~~~~~~~w~~~~ 485 (621)
..+.+++++..+++++.|+.+++|++..
T Consensus 310 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 310 WSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp EEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 9999999999999999999999999764
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=8.7e-31 Score=260.08 Aligned_cols=280 Identities=10% Similarity=0.031 Sum_probs=207.6
Q ss_pred EEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCCEEE
Q psy15549 18 SVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLA 97 (621)
Q Consensus 18 ~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 97 (621)
...+.+++. +|++|+.||.|+ +||+.+++.... +. ...|.++.|+|+ ++
T Consensus 41 ~~~~~~d~~-----~l~sg~~Dg~v~--------------iwd~~~~~~~~~-------~~--~~~v~~~~~~~~---~~ 89 (343)
T 3lrv_A 41 NKSMYYDKW-----VCMCRCEDGALH--------------FTQLKDSKTITT-------IT--TPNPRTGGEHPA---II 89 (343)
T ss_dssp CSSSSEEEE-----EEEEEEETTEEE--------------EEEESSSSCEEE-------EE--EECCCTTCCCCS---EE
T ss_pred hhhhcCCCC-----EEEEECCCCcEE--------------EEECCCCcEEEE-------Ee--cCCceeeeeCCc---eE
Confidence 345667776 999999999999 888887654332 22 466888889888 77
Q ss_pred EEc-CCceEEEEeccCcc--ccccceecccc-cccCCCeEEEEECC--CCCEEEEEeCCCcEEEEEccCCCCCCCCCCCC
Q psy15549 98 SGD-DVGKEIWYLTERES--GIANVEFASDL-SRHQKAVNVVRFSP--NGELLASGDDESTIIVWKQKTDQDLPEFPSSN 171 (621)
Q Consensus 98 s~~-d~~v~iw~~~~~~~--~~~~~~~~~~~-~~h~~~V~~i~~sp--~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 171 (621)
+++ |+.+++|+...... .......+..+ .+|...|.+++|+| ++++|++++.||+|++||+.+++..
T Consensus 90 s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------- 162 (343)
T 3lrv_A 90 SRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY------- 162 (343)
T ss_dssp EECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE-------
T ss_pred EecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE-------
Confidence 776 88899997663210 00000212222 35778999999999 9999999999999999999988752
Q ss_pred cccccccccceeeeeee-cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE-EEecc-CCcceEEEEEcCCCCE
Q psy15549 172 LDEENVNKEHWIVTKIL-RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNL-GILTE-HKKFVQGVAWDPKNQY 248 (621)
Q Consensus 172 ~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~-~~~~v~~l~~sp~~~~ 248 (621)
... ..|...|.+++|+|++.+|++|+.||.|++||+++++.+ ..+.. |...|.+++|+|++.+
T Consensus 163 --------------~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 163 --------------IVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW 228 (343)
T ss_dssp --------------EEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE
T ss_pred --------------EEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE
Confidence 222 346668999999999999999999999999999999887 78887 9999999999999999
Q ss_pred EEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccce--eeeeecCCCCeEEeccccccCCCC
Q psy15549 249 VATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFF--RRLTFSPDGQLLIAPSGCLENSDS 326 (621)
Q Consensus 249 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~spdg~~l~~~s~~~~~~d~ 326 (621)
|++++ |+.|++||+++++.+..+.... .+...+ .+++|+|+|++|+++++
T Consensus 229 l~s~~-~~~v~iwd~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~g~~l~~~s~------- 280 (343)
T 3lrv_A 229 MVVEC-DQTVVCFDLRKDVGTLAYPTYT--------------------IPEFKTGTVTYDIDDSGKNMIAYSN------- 280 (343)
T ss_dssp EEEEE-SSBEEEEETTSSTTCBSSCCCB--------------------C-----CCEEEEECTTSSEEEEEET-------
T ss_pred EEEEe-CCeEEEEEcCCCCcceeecccc--------------------cccccccceEEEECCCCCEEEEecC-------
Confidence 99999 5599999999876654432110 001111 35888888888877551
Q ss_pred CCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEE
Q psy15549 327 TRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAF 406 (621)
Q Consensus 327 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 406 (621)
.++.|++|++........
T Consensus 281 --------------------------------------------------------------~d~~i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 281 --------------------------------------------------------------ESNSLTIYKFDKKTKNWT 298 (343)
T ss_dssp --------------------------------------------------------------TTTEEEEEEECTTTCSEE
T ss_pred --------------------------------------------------------------CCCcEEEEEEcccccceE
Confidence 267788888766543332
Q ss_pred EecccccceEEEEEcC---CCCeEEEEeCCCcEEEEEecCC
Q psy15549 407 IANIHYTKLTDITWSS---DGKVLIASSTDGYCSIISFGDN 444 (621)
Q Consensus 407 ~~~~h~~~v~~~~~sp---dg~~l~s~s~dg~i~iw~~~~~ 444 (621)
. .++..++|++ +++.|++++.||.+.++-....
T Consensus 299 ~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 299 K-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp E-----EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred e-----cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 2 4678889998 8899999999999998875543
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=8.2e-31 Score=261.13 Aligned_cols=303 Identities=11% Similarity=0.070 Sum_probs=201.2
Q ss_pred eEEeccccccccceeeccccccccCcEEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEE
Q psy15549 58 IWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRF 137 (621)
Q Consensus 58 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 137 (621)
||++...... ..+..|...|++++|+|||++||+|+++++++|+.... ..... .+...+..+++
T Consensus 3 i~s~~~~~~~-------~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~-------~~~~~--~~~~~~~~~~~ 66 (355)
T 3vu4_A 3 LGSMITRNPI-------VPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPV-------AHIMS--QEMRHLSKVRM 66 (355)
T ss_dssp -----------------------CCCCCEEEECTTSSEEEEECSSEEEEEEETTE-------EEEEE--EECSCCCEEEE
T ss_pred cccccccCCc-------cccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCc-------ceeee--eecCCeEEEEE
Confidence 6666655432 23688999999999999999999999889999998764 22222 22235788899
Q ss_pred CCCCCEE-EEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeE
Q psy15549 138 SPNGELL-ASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTA 216 (621)
Q Consensus 138 sp~g~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i 216 (621)
.++++++ ++++.|++|++||+.+++.+ ..+. +...|.+++|+++. ++++. ++.|
T Consensus 67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~---------------------~~~~-~~~~v~~v~~~~~~--~~~~~-~~~i 121 (355)
T 3vu4_A 67 LHRTNYVAFVTGVKEVVHIWDDVKKQDV---------------------SRIK-VDAPVKDLFLSREF--IVVSY-GDVI 121 (355)
T ss_dssp CTTSSEEEEECSSTTEEEEEETTTTEEE---------------------EEEE-CSSCEEEEEECSSE--EEEEE-TTEE
T ss_pred cCCCCEEEEEECCccEEEEEECCCCcEE---------------------EEEE-CCCceEEEEEcCCE--EEEEE-cCEE
Confidence 9988877 56778899999999988753 2333 66789999999864 44443 7899
Q ss_pred EEEECCCC-cEEEEeccCCcceEEEEEcCCCCEEEE--EeCCCcEEEEEccCceeeeecccCCCCCCCcccccccccc-c
Q psy15549 217 IMWDVHKG-KNLGILTEHKKFVQGVAWDPKNQYVAT--LSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVP-L 292 (621)
Q Consensus 217 ~vwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 292 (621)
++||+.++ +.+..+.. ....+++++ .++++ |+.||.|++||+.++.......... ......+ +
T Consensus 122 ~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~--------~~~~~~p~~ 188 (355)
T 3vu4_A 122 SVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV--------QQKAILGKG 188 (355)
T ss_dssp EEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC--------------------------CC
T ss_pred EEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccc--------cccccCccc
Confidence 99999988 66655544 445567777 66666 5789999999998765321110000 0000001 1
Q ss_pred cccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCC
Q psy15549 293 FHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSD 372 (621)
Q Consensus 293 ~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (621)
.....|...|.+++|+|+|++|++
T Consensus 189 ~~~~~h~~~v~~~~~s~~g~~l~s-------------------------------------------------------- 212 (355)
T 3vu4_A 189 VLIKAHTNPIKMVRLNRKSDMVAT-------------------------------------------------------- 212 (355)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEE--------------------------------------------------------
T ss_pred EEEEccCCceEEEEECCCCCEEEE--------------------------------------------------------
Confidence 122344556666777766666555
Q ss_pred CCCCccCCCcEEEEEEcCCc-EEEEeCCCCceeEEEecc-cccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCccc
Q psy15549 373 DKPLFKLPYRIVIAVATENN-ILLYDTQHASPFAFIANI-HYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPY 450 (621)
Q Consensus 373 ~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~-h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~ 450 (621)
++.|++ |++||+.+++.+..+..+ |...|++++|+|+|++|++++.||+|++||+..+......
T Consensus 213 --------------~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~ 278 (355)
T 3vu4_A 213 --------------CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRH 278 (355)
T ss_dssp --------------EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSE
T ss_pred --------------EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccc
Confidence 457898 999999999999988645 9999999999999999999999999999999865422111
Q ss_pred C--C---------------------CCCcccccCCCCCCCCcccCCCcccHHHhccc
Q psy15549 451 V--P---------------------PSGEESKENDPTKGEPVRSEDKPRSAEQAKGE 484 (621)
Q Consensus 451 ~--~---------------------~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~~~ 484 (621)
. . .......+.+++++..++....|+.+++|...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 279 ALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp ETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred cccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 0 0 01112445677888878877788888887754
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.2e-28 Score=233.45 Aligned_cols=262 Identities=15% Similarity=0.118 Sum_probs=179.0
Q ss_pred eEEeccccccccceeeccccccccCcEEEEEEccCCCEEEEEc--CCce-EEEEeccCccccccceecccccccCCCeEE
Q psy15549 58 IWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD--DVGK-EIWYLTERESGIANVEFASDLSRHQKAVNV 134 (621)
Q Consensus 58 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~--d~~v-~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 134 (621)
+|+..++. .++...++..|..+|..+.|.||-.-|++.. .=.+ .++.+.-..... .+.....-.+|...|..
T Consensus 67 lw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~-~~~~~l~s~g~~~~v~~ 141 (356)
T 2w18_A 67 LWKALDAW----QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDE-SEKQVLLKSGNIKAVLG 141 (356)
T ss_dssp EEEESSSS----BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-------CCEEEEEEEEEEEEEE
T ss_pred EcccCCCc----cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCcc-ccccEEEeCCCeEEEEe
Confidence 99988762 4556777899999999999999754333322 2111 222222111000 00111111344445554
Q ss_pred EEECCCCCEEEEEe--CCCcEEEEEccC-CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC---CCCEEE
Q psy15549 135 VRFSPNGELLASGD--DESTIIVWKQKT-DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP---TSTHLI 208 (621)
Q Consensus 135 i~~sp~g~~l~s~s--~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp---d~~~l~ 208 (621)
+ ++++++.+++ .|+.|++|++.. ++. ...+.+|...++.++|++ ++.+|+
T Consensus 142 l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~---------------------~~s~~~~~~~v~~l~fs~~~g~~~~La 197 (356)
T 2w18_A 142 L---TKRRLVSSSGTLSDQQVEVMTFAEDGGG---------------------KENQFLMPPEETILTFAEVQGMQEALL 197 (356)
T ss_dssp E---TTTEEEEEESSSTTCEEEEEEECTTSCE---------------------EEEEEECCCSSCEEEEEEEETSTTEEE
T ss_pred c---CCCcEEEecccCCCCcEEEEEECCCCce---------------------eeeeccCCCceeeEEeeccCCCCceEE
Confidence 4 5666666643 589999999854 442 355678999999999999 779999
Q ss_pred EEeCCCeEEEEECCCCcEEEEeccCCc---ceEEEEEcCCCCEE------------EEEeCCCcEEEEEccCceeeeecc
Q psy15549 209 SGSVDNTAIMWDVHKGKNLGILTEHKK---FVQGVAWDPKNQYV------------ATLSSDRSLRTYSIQSKKVISRAC 273 (621)
Q Consensus 209 s~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~l~~sp~~~~l------------~s~~~dg~i~iwd~~~~~~~~~~~ 273 (621)
+++.|++|+|||+.++++++++.+|.. .+.+++|+|+|.++ ++|+.|++|++||..+++.+..+
T Consensus 198 SgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~- 276 (356)
T 2w18_A 198 GTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVM- 276 (356)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEE-
T ss_pred EecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEE-
Confidence 999999999999999999999986543 57778999999886 56778899999999888765432
Q ss_pred cCCCCCCCccccccccccccccCCcccceeeeeecCCCCe--EEeccccccCCCCCCcceeeeeeeeecccCCCceecCC
Q psy15549 274 RSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQL--LIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPS 351 (621)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~--l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 351 (621)
.+++ |+|.. ++.+.
T Consensus 277 ------------------------------~~~~-p~Gh~~~~lsg~--------------------------------- 292 (356)
T 2w18_A 277 ------------------------------LYCL-PPGQAGRFLEGD--------------------------------- 292 (356)
T ss_dssp ------------------------------EECC-CTTCCCCEEEEE---------------------------------
T ss_pred ------------------------------Eeec-cCCCcceeEccc---------------------------------
Confidence 1222 33321 11111
Q ss_pred cccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceE-EEEEcCCCCeEEEE
Q psy15549 352 LQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLT-DITWSSDGKVLIAS 430 (621)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~-~~~~spdg~~l~s~ 430 (621)
..+..+++++.|++|+|||+.+++.+..+. +|...+. .++|||||++|++|
T Consensus 293 ---------------------------~sg~~lASgS~DgTIkIWDl~tGk~l~tL~-gH~~~vvs~vafSPDG~~LaSG 344 (356)
T 2w18_A 293 ---------------------------VKDHCAAAILTSGTIAIWDLLLGQCTALLP-PVSDQHWSFVKWSGTDSHLLAG 344 (356)
T ss_dssp ---------------------------EETTEEEEEETTSCEEEEETTTCSEEEEEC-CC--CCCCEEEECSSSSEEEEE
T ss_pred ---------------------------cCCCEEEEEcCCCcEEEEECCCCcEEEEec-CCCCCeEEEEEECCCCCEEEEE
Confidence 013567888899999999999999999884 5776555 68999999999999
Q ss_pred eCCCcEEEEEe
Q psy15549 431 STDGYCSIISF 441 (621)
Q Consensus 431 s~dg~i~iw~~ 441 (621)
+.|++|+|||+
T Consensus 345 S~D~TIklWd~ 355 (356)
T 2w18_A 345 QKDGNIFVYHY 355 (356)
T ss_dssp CTTSCEEEEEE
T ss_pred ECCCcEEEecC
Confidence 99999999996
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=8.3e-29 Score=254.45 Aligned_cols=333 Identities=15% Similarity=0.110 Sum_probs=244.5
Q ss_pred CcEEEEE---EccCCCEEEEEc---------------CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCE
Q psy15549 82 KAVNVVR---FSPNGELLASGD---------------DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGEL 143 (621)
Q Consensus 82 ~~V~~l~---~spdg~~las~~---------------d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~ 143 (621)
..+..++ |+|++..++..+ ++.+.||.+..... .+.....+..+ ..+.+++|+|++.+
T Consensus 61 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~---~~~~~~~~~~~-~~~~~~~~s~~~~~ 136 (433)
T 3bws_A 61 IALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGI---THRFISRFKTG-FQPKSVRFIDNTRL 136 (433)
T ss_dssp EEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTC---SEEEEEEEECS-SCBCCCEESSSSEE
T ss_pred CccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCC---cceEEEEEcCC-CCceEEEEeCCCeE
Confidence 4566666 777766555432 22235666544211 11333334333 44668999997778
Q ss_pred EEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC
Q psy15549 144 LASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHK 223 (621)
Q Consensus 144 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~ 223 (621)
+++++.++.|++||+.+++....+. ...+.+|...|.+++|++++.++++++.|+.|++||+.+
T Consensus 137 ~~~~~~~~~i~~~d~~~g~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 137 AIPLLEDEGMDVLDINSGQTVRLSP----------------PEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp EEEBTTSSSEEEEETTTCCEEEECC----------------CHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred EEEeCCCCeEEEEECCCCeEeeecC----------------cccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 8888889999999999887542110 013458899999999999999999999999999999999
Q ss_pred CcEEEEeccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccce
Q psy15549 224 GKNLGILTEHKKFVQGVAWDPKNQYVATLS-SDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFF 302 (621)
Q Consensus 224 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 302 (621)
++.+..+..|...+.+++|+|+++++++++ .|+.|++||+++++.+..+.. ...+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------------------------~~~~ 256 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK------------------------IGLP 256 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC------------------------CSEE
T ss_pred ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC------------------------CCCc
Confidence 999999988999999999999999886555 799999999999887766532 2236
Q ss_pred eeeeecCCCCeEEeccccc-c--CCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccC
Q psy15549 303 RRLTFSPDGQLLIAPSGCL-E--NSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKL 379 (621)
Q Consensus 303 ~~~~~spdg~~l~~~s~~~-~--~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (621)
.+++|+|+|+++++++... . ..|+.+++|++..... .....+...+..+.|+|
T Consensus 257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~--------~~~~~~~~~~~~~~~~~---------------- 312 (433)
T 3bws_A 257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL--------IDTIGPPGNKRHIVSGN---------------- 312 (433)
T ss_dssp EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE--------EEEEEEEECEEEEEECS----------------
T ss_pred eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE--------EeeccCCCCcceEEECC----------------
Confidence 8999999999998876210 0 0266788888652211 11112223444555554
Q ss_pred CCcEE-EEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeC---------------CCcEEEEEecC
Q psy15549 380 PYRIV-IAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASST---------------DGYCSIISFGD 443 (621)
Q Consensus 380 ~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~---------------dg~i~iw~~~~ 443 (621)
+++.+ ++++.++.|++||+.+++.+..+. +...+.+++|+|+|++|++++. ||.|++||+.+
T Consensus 313 ~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 313 TENKIYVSDMCCSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred CCCEEEEEecCCCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 55555 455779999999999998887774 6678999999999999988876 57999999999
Q ss_pred CcCCcccCCCCCcccccCCCCCCCCcccCC-CcccHHHhcccC
Q psy15549 444 NEIGIPYVPPSGEESKENDPTKGEPVRSED-KPRSAEQAKGEG 485 (621)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~w~~~~ 485 (621)
++....+..+ ..+..+.+++++..++.++ .++.+++|++.+
T Consensus 391 ~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 391 DTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 9888777663 4567888999999887665 599999998753
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.9e-30 Score=252.48 Aligned_cols=278 Identities=11% Similarity=0.050 Sum_probs=200.7
Q ss_pred EEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q psy15549 86 VVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDL 164 (621)
Q Consensus 86 ~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~ 164 (621)
...+.+++.+|++|+ |+.|++|++..+ ..+..+. ...|.++.|+|+ +++++.|++|++|+......+
T Consensus 41 ~~~~~~d~~~l~sg~~Dg~v~iwd~~~~-------~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~ 108 (343)
T 3lrv_A 41 NKSMYYDKWVCMCRCEDGALHFTQLKDS-------KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI 108 (343)
T ss_dssp CSSSSEEEEEEEEEEETTEEEEEEESSS-------SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred hhhhcCCCCEEEEECCCCcEEEEECCCC-------cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence 334567888999988 999999999876 3333333 456788889888 999999999999987643211
Q ss_pred CCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCcceEEEE
Q psy15549 165 PEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP--TSTHLISGSVDNTAIMWDVHKGKNLGILT-EHKKFVQGVA 241 (621)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp--d~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~ 241 (621)
..+... ........+|...|.+++|+| ++++|++++.||.|++||+++++.+.... .+...|.+++
T Consensus 109 ~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~ 177 (343)
T 3lrv_A 109 LDSKTN-----------KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGV 177 (343)
T ss_dssp EETTTC-----------CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEE
T ss_pred eecCCc-----------ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEE
Confidence 000000 001123346778999999999 99999999999999999999999877664 4555899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCceee-eecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecccc
Q psy15549 242 WDPKNQYVATLSSDRSLRTYSIQSKKVI-SRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGC 320 (621)
Q Consensus 242 ~sp~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~ 320 (621)
|+|++.+|++|+.||.|++||+++++.+ ..+.. .|...|.+++|+|+|.+|++++
T Consensus 178 ~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~----------------------~h~~~v~~l~fs~~g~~l~s~~-- 233 (343)
T 3lrv_A 178 LHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV----------------------DEEAKIKEVKFADNGYWMVVEC-- 233 (343)
T ss_dssp ECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC----------------------CTTSCEEEEEECTTSSEEEEEE--
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec----------------------cCCCCEEEEEEeCCCCEEEEEe--
Confidence 9999999999999999999999988765 44421 2456789999999988877654
Q ss_pred ccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCC
Q psy15549 321 LENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQH 400 (621)
Q Consensus 321 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 400 (621)
++.|++||+++
T Consensus 234 ---------------------------------------------------------------------~~~v~iwd~~~ 244 (343)
T 3lrv_A 234 ---------------------------------------------------------------------DQTVVCFDLRK 244 (343)
T ss_dssp ---------------------------------------------------------------------SSBEEEEETTS
T ss_pred ---------------------------------------------------------------------CCeEEEEEcCC
Confidence 34888888888
Q ss_pred CceeEEEec--ccccce--EEEEEcCCCCeEEEEeC-CCcEEEEEecCCcCCcccCCCCCcccccCCCC---CCCCcccC
Q psy15549 401 ASPFAFIAN--IHYTKL--TDITWSSDGKVLIASST-DGYCSIISFGDNEIGIPYVPPSGEESKENDPT---KGEPVRSE 472 (621)
Q Consensus 401 ~~~~~~~~~--~h~~~v--~~~~~spdg~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~ 472 (621)
++.+..+.. .|...+ .+++|+|+|++|++++. |+.|++|++..+...-.. ..+..+.+.+ +...++..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp STTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEE
T ss_pred CCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEE
Confidence 766544321 133333 46999999999999998 999999999765432211 3445566666 66777777
Q ss_pred CCcccHHHhcc
Q psy15549 473 DKPRSAEQAKG 483 (621)
Q Consensus 473 ~~~~~~~~w~~ 483 (621)
..++.+.++-.
T Consensus 321 ~~d~~~~~~~~ 331 (343)
T 3lrv_A 321 CGDGGIAAILK 331 (343)
T ss_dssp EETTEEEEEEE
T ss_pred ecCCceEEEEe
Confidence 77777776643
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=3.6e-29 Score=253.01 Aligned_cols=262 Identities=13% Similarity=0.122 Sum_probs=173.4
Q ss_pred CeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEcc---
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP--- 91 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--- 91 (621)
.+....+++++. +||+|+.|+.|+ |||...+.... ......+.+|.+.|++++|+|
T Consensus 91 ~~~~~~~~~~~~-----~las~~~d~~v~--------------lw~~~~~~~~~--~~~~~~~~gH~~~v~~v~~~p~~~ 149 (393)
T 4gq1_A 91 DGNVNSSPVYSL-----FLACVCQDNTVR--------------LIITKNETIIT--QHVLGGKSGHHNFVNDIDIADVYS 149 (393)
T ss_dssp ------CCEEEE-----EEEEEETTSCEE--------------EEEEETTEEEE--EEEECTTTSCSSCEEEEEEEEEEC
T ss_pred CcceeecCCCCC-----EEEEEeCCCcEE--------------EEECCCCccce--eeeecccCCCCCceEEEEEccccc
Confidence 334444555665 999999999999 99988765432 234556899999999999998
Q ss_pred -----CCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCC-EEEEEeCCCcEEEEEccCCCCC
Q psy15549 92 -----NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE-LLASGDDESTIIVWKQKTDQDL 164 (621)
Q Consensus 92 -----dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~-~l~s~s~dg~i~vwd~~~~~~~ 164 (621)
|+++||+|+ |+.|+|||+..+ .....+..|...|.+++|+|++. +|++++.|++|++||+.+++..
T Consensus 150 ~~~~~d~~~las~s~D~tv~~Wd~~~~-------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~ 222 (393)
T 4gq1_A 150 ADNRLAEQVIASVGDDCTLIIWRLTDE-------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSA 222 (393)
T ss_dssp TTCSEEEEEEEEEETTSEEEEEEEETT-------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--
T ss_pred cccCCCCCEEEEEECCCeEEEEECCCC-------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccc
Confidence 899999998 889999999876 55566778899999999999874 8999999999999999988765
Q ss_pred CCCCCCCccccc----ccccceeeeeeecCCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEE
Q psy15549 165 PEFPSSNLDEEN----VNKEHWIVTKILRGHLEDVYDISWS-PTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQG 239 (621)
Q Consensus 165 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~i~~s-pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 239 (621)
............ .............+|...+.++.|+ |+++.|++++.|+.+++||+..+.....+..|...+..
T Consensus 223 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~ 302 (393)
T 4gq1_A 223 EENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGP 302 (393)
T ss_dssp --------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------
T ss_pred ccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCcccc
Confidence 433211100000 0000011122345788899999986 79999999999999999999888766666555444433
Q ss_pred EE------------------EcC--CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcc
Q psy15549 240 VA------------------WDP--KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMK 299 (621)
Q Consensus 240 l~------------------~sp--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (621)
+. |+| ++.++++|+.||.|++||+.+++....+. .+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-----------------------~~~ 359 (393)
T 4gq1_A 303 KNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-----------------------QLG 359 (393)
T ss_dssp -CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-----------------------ECS
T ss_pred EEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec-----------------------CCC
Confidence 33 333 33456778889999999999887665543 234
Q ss_pred cceeeeeecCCCCeEEeccccccCCCCCCcceee
Q psy15549 300 SFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISV 333 (621)
Q Consensus 300 ~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~ 333 (621)
..|.+++|+|||++||+++ . +.+.+|.+
T Consensus 360 ~~V~svafspdG~~LA~as-----~-~Gv~lvrL 387 (393)
T 4gq1_A 360 MPIVDFCWHQDGSHLAIAT-----E-GSVLLTRL 387 (393)
T ss_dssp SCEEEEEECTTSSEEEEEE-----S-SEEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEe-----C-CCeEEEEE
Confidence 4679999999999999987 3 44555544
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=3.6e-28 Score=230.22 Aligned_cols=299 Identities=9% Similarity=-0.002 Sum_probs=207.6
Q ss_pred cEEEEEEccCCC---EEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe-CCCcEE-EEE
Q psy15549 83 AVNVVRFSPNGE---LLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-DESTII-VWK 157 (621)
Q Consensus 83 ~V~~l~~spdg~---~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s-~dg~i~-vwd 157 (621)
.+.++-|-.-|- -+++++...|++|+..... .++.++.+.+|..+|..+.+.||..-|++.. ..-.+. ++-
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~s 116 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAW----QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRA 116 (356)
T ss_dssp EEEEEEEC----CEEEEEEEESSEEEEEEESSSS----BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEE
T ss_pred EEeeeeeccCCCCccEEEEeccceEEEcccCCCc----cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEE
Confidence 456666755443 5778889999999998752 4577888999999999999999654333322 111111 111
Q ss_pred ccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe--CCCeEEEEEC-CCCcEEEEeccCC
Q psy15549 158 QKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS--VDNTAIMWDV-HKGKNLGILTEHK 234 (621)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~--~dg~i~vwd~-~~~~~~~~~~~~~ 234 (621)
+.-...- ..+.......+|...|..+ ++++++.+++ .|+.|++|++ .+++.+..+..|.
T Consensus 117 la~spd~---------------~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 117 LFCSSDD---------------ESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp ECC---------------------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred EEECCCc---------------cccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 1111000 0000011113344445444 5666555544 5999999999 4588888888999
Q ss_pred cceEEEEEcC---CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCC
Q psy15549 235 KFVQGVAWDP---KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDG 311 (621)
Q Consensus 235 ~~v~~l~~sp---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg 311 (621)
..++.++|+| ++.+|++++.|++|+|||+.+++.++.+..+... ...+.+++|+|+|
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~--------------------v~~v~~vafSpdG 238 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY--------------------QASVCHKAYSEMG 238 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----------------------CCCEEEEEEETT
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc--------------------eeeeEEEEECCCC
Confidence 9999999999 7799999999999999999999999888543211 1245778999999
Q ss_pred CeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCC
Q psy15549 312 QLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATEN 391 (621)
Q Consensus 312 ~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 391 (621)
.++++++ .+.. + ..+++++.|+
T Consensus 239 ~~lvs~s-----~~~~--~---------------------------------------------------w~laSGs~D~ 260 (356)
T 2w18_A 239 LLFIVLS-----HPCA--K---------------------------------------------------ESESLRSPVF 260 (356)
T ss_dssp EEEEEEC----------------------------------------------------------------------CCE
T ss_pred CEEEEec-----cCCC--c---------------------------------------------------ceeeccCCCc
Confidence 9998876 1111 1 1367788899
Q ss_pred cEEEEeCCCCceeEEE----ecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCccc-ccCCCCCC
Q psy15549 392 NILLYDTQHASPFAFI----ANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEES-KENDPTKG 466 (621)
Q Consensus 392 ~i~iwd~~~~~~~~~~----~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 466 (621)
+|++||..+++.+..+ ..+|...+.+..++ +.++|+++.||+|+|||+.++++...+.+|...+. .+.|+|+|
T Consensus 261 tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG 338 (356)
T 2w18_A 261 QLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD 338 (356)
T ss_dssp EEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS
T ss_pred EEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC
Confidence 9999999999877655 24676665555554 88999999999999999999999999998877655 47899999
Q ss_pred CCcccCCCcccHHHhcc
Q psy15549 467 EPVRSEDKPRSAEQAKG 483 (621)
Q Consensus 467 ~~~~s~~~~~~~~~w~~ 483 (621)
+.+++++.|++|++|+.
T Consensus 339 ~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 339 SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCCcEEEecC
Confidence 99999999999999974
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=4.7e-28 Score=246.16 Aligned_cols=305 Identities=13% Similarity=0.082 Sum_probs=231.4
Q ss_pred CCeEEEeccccccCCcceEEEEec----CCc----eEEeeeccCccccccceeEEe--ccccccccceeeccccccccCc
Q psy15549 14 DPVLSVDIQLKQEKDNCYRIVTGG----ADS----HVFDYLLKIPHRLKTGKIWYL--TERESGIANVEFASDLSRHQKA 83 (621)
Q Consensus 14 ~~v~~l~~spd~~~~~~~~l~tg~----~dg----~v~~~d~~~~~~~~~~~iw~~--~~~~~~~~~~~~~~~~~~h~~~ 83 (621)
..+...+|++.+. .++++|+ .+| .|+ |||+ .+++... ...+.+|...
T Consensus 63 ~~~~~~~w~~~g~----~~~~~g~~~~~~~G~~~~~i~--------------lwd~~~~~~~~~~-----~~~~~~~~~~ 119 (415)
T 2hqs_A 63 QEVQPAAWSALGI----DAVVVGQVTPNPDGSYNVAYQ--------------LVDTGGAPGTVLA-----QNSYKVNKQW 119 (415)
T ss_dssp GGCCHHHHHTTTC----CEEEEEEEEECTTSCEEEEEE--------------EEECSSSTTCEEE-----EEEEEECGGG
T ss_pred cCcCHHHHHhcCC----CEEEEEEEEECCCCeEEEEEE--------------EEeCCCCCCCEEe-----eeEEEcChhH
Confidence 4678888988886 4777876 467 777 8888 6665321 1346778888
Q ss_pred EEEEEEcc--------------CCCEEEEEc-C------CceEEEEeccCccccccceecccccccCCCeEEEEECCCCC
Q psy15549 84 VNVVRFSP--------------NGELLASGD-D------VGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 142 (621)
Q Consensus 84 V~~l~~sp--------------dg~~las~~-d------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~ 142 (621)
+..+++++ .+..++.++ + +.|++|++... ....+.+|...|.+++|+|+|+
T Consensus 120 ~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~--------~~~~l~~~~~~v~~~~~Spdg~ 191 (415)
T 2hqs_A 120 LRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY--------NQFVVHRSPQPLMSPAWSPDGS 191 (415)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC--------SCEEEEEESSCEEEEEECTTSS
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC--------CCEEEeCCCCcceeeEEcCCCC
Confidence 88777765 155666554 3 57899998742 3456678999999999999999
Q ss_pred EEEEEeCCC---cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEE-EEeCCC--eE
Q psy15549 143 LLASGDDES---TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLI-SGSVDN--TA 216 (621)
Q Consensus 143 ~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~-s~~~dg--~i 216 (621)
+|++++.++ .|++||+.+++. ..+..|...+.+++|+|||++|+ +++.++ .|
T Consensus 192 ~la~~s~~~~~~~i~~~d~~tg~~----------------------~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 192 KLAYVTFESGRSALVIQTLANGAV----------------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCE----------------------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred EEEEEEecCCCcEEEEEECCCCcE----------------------EEeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence 999999875 999999998763 34567788899999999999888 666555 49
Q ss_pred EEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeC-CC--cEEEEEccCceeeeecccCCCCCCCcccccccccccc
Q psy15549 217 IMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSS-DR--SLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLF 293 (621)
Q Consensus 217 ~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (621)
++||+.+++. ..+..|...+.+++|+|+|++|++++. ++ .|.+||+.+++... +.
T Consensus 250 ~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~-------------------- 307 (415)
T 2hqs_A 250 YVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-IT-------------------- 307 (415)
T ss_dssp EEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CC--------------------
T ss_pred EEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-Ee--------------------
Confidence 9999988876 567778889999999999999998886 44 67777887765322 21
Q ss_pred ccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCC
Q psy15549 294 HDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDD 373 (621)
Q Consensus 294 ~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (621)
.+...+.+++|+|||++|++++. +
T Consensus 308 ---~~~~~~~~~~~spdG~~l~~~~~-----~------------------------------------------------ 331 (415)
T 2hqs_A 308 ---WEGSQNQDADVSSDGKFMVMVSS-----N------------------------------------------------ 331 (415)
T ss_dssp ---CSSSEEEEEEECTTSSEEEEEEE-----C------------------------------------------------
T ss_pred ---cCCCcccCeEECCCCCEEEEEEC-----c------------------------------------------------
Confidence 11235678999999999987661 0
Q ss_pred CCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCC---cEEEEEecCCcCCccc
Q psy15549 374 KPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDG---YCSIISFGDNEIGIPY 450 (621)
Q Consensus 374 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg---~i~iw~~~~~~~~~~~ 450 (621)
..+..|++||+.+++.. .+ ..|. .+.+++|+|||++|++++.++ .|++|++. +.....+
T Consensus 332 --------------~g~~~i~~~d~~~~~~~-~l-~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l 393 (415)
T 2hqs_A 332 --------------GGQQHIAKQDLATGGVQ-VL-SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARL 393 (415)
T ss_dssp --------------SSCEEEEEEETTTCCEE-EC-CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEEC
T ss_pred --------------CCceEEEEEECCCCCEE-Ee-cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEe
Confidence 01357999999988764 33 2343 899999999999999988777 79999987 5556778
Q ss_pred CCCCCcccccCCCCCCC
Q psy15549 451 VPPSGEESKENDPTKGE 467 (621)
Q Consensus 451 ~~~~~~~~~~~~~~~~~ 467 (621)
..+.+.+..+.|+|...
T Consensus 394 ~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 394 PATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CCSSSEEEEEEECCCCC
T ss_pred eCCCCCCcCCccccccc
Confidence 88888898888888654
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=5.2e-27 Score=245.70 Aligned_cols=348 Identities=12% Similarity=0.098 Sum_probs=243.2
Q ss_pred eccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCCEEEEE
Q psy15549 20 DIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASG 99 (621)
Q Consensus 20 ~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 99 (621)
+|+|++. ++++++.|+.|. +||..+++... ++..+.. +.+++|+|||++|+++
T Consensus 144 ~~~p~~~-----~~vs~~~d~~V~--------------v~D~~t~~~~~-------~i~~g~~-~~~v~~spdg~~l~v~ 196 (543)
T 1nir_A 144 DLDLPNL-----FSVTLRDAGQIA--------------LVDGDSKKIVK-------VIDTGYA-VHISRMSASGRYLLVI 196 (543)
T ss_dssp CCCGGGE-----EEEEEGGGTEEE--------------EEETTTCCEEE-------EEECSTT-EEEEEECTTSCEEEEE
T ss_pred ccCCCCE-----EEEEEcCCCeEE--------------EEECCCceEEE-------EEecCcc-cceEEECCCCCEEEEE
Confidence 4899997 999999999999 88877665432 2442222 8899999999999998
Q ss_pred c-CCceEEEEe--ccCccccccceecccccccCCCeEEEEECC----CCCEEEEEe-CCCcEEEEEccCCCCCCCCCCCC
Q psy15549 100 D-DVGKEIWYL--TERESGIANVEFASDLSRHQKAVNVVRFSP----NGELLASGD-DESTIIVWKQKTDQDLPEFPSSN 171 (621)
Q Consensus 100 ~-d~~v~iw~~--~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp----~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~ 171 (621)
+ ++.|.+||+ .+. ..+..+. +...+..++|+| +|++|++++ .+++|.+||..+.+.+..++...
T Consensus 197 ~~d~~V~v~D~~~~t~-------~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g 268 (543)
T 1nir_A 197 GRDARIDMIDLWAKEP-------TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 268 (543)
T ss_dssp ETTSEEEEEETTSSSC-------EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE
T ss_pred CCCCeEEEEECcCCCC-------cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccC
Confidence 8 888999999 443 4455555 345689999999 999999988 48999999998887653321000
Q ss_pred cccccccccceeeeeeecCC-CCCeEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEEE--EeccCCcceEEEEEcCCCC
Q psy15549 172 LDEENVNKEHWIVTKILRGH-LEDVYDISWSPTSTH-LISGSVDNTAIMWDVHKGKNLG--ILTEHKKFVQGVAWDPKNQ 247 (621)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~spd~~~-l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~ 247 (621)
... .....| ...+.++.++|++.. +++...++.|.+||+.+.+.+. .+ .+...+..++|+|+|+
T Consensus 269 ~~~-----------~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~ 336 (543)
T 1nir_A 269 MTV-----------DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHR 336 (543)
T ss_dssp ECS-----------SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSC
T ss_pred ccc-----------CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCC
Confidence 000 000002 337899999997765 5566678999999998865443 44 3566688899999999
Q ss_pred EEEEEe-CCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCC-CCeEEeccccccCCC
Q psy15549 248 YVATLS-SDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPD-GQLLIAPSGCLENSD 325 (621)
Q Consensus 248 ~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd-g~~l~~~s~~~~~~d 325 (621)
+|++++ .+++|.+||+.+++++..+.....+ +......+ ++|+ |..++++.. .+
T Consensus 337 ~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p-------------------h~g~g~~~-~~p~~g~~~~s~~~----~d 392 (543)
T 1nir_A 337 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTP-------------------HPGRGANF-VHPKYGPVWSTSHL----GD 392 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSB-------------------CCTTCEEE-EETTTEEEEEEEBS----SS
T ss_pred EEEEEecCCCeEEEEECCCCeEEEeeccCCCC-------------------CCCCCccc-CCCCCccEEEeccC----CC
Confidence 877665 5889999999999988776532211 11111122 4677 555555431 47
Q ss_pred CCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEE-------cCCcEEEEeC
Q psy15549 326 STRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVA-------TENNILLYDT 398 (621)
Q Consensus 326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~dg~i~iwd~ 398 (621)
+++.+|+....-........+..+..+......+.++| ++++|+++. .+++|.+||+
T Consensus 393 ~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p----------------dg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 393 GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP----------------KSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT----------------TCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred ceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC----------------CCCcEEEecCCCCCcccCceEEEEEC
Confidence 88999987631111111233344444544455556665 778888876 2679999999
Q ss_pred CCCcee-EEEe-------cccccceEEEEEcCCCCeEEEEe-----CCCcEEEEEecCCcCCcccCCCC
Q psy15549 399 QHASPF-AFIA-------NIHYTKLTDITWSSDGKVLIASS-----TDGYCSIISFGDNEIGIPYVPPS 454 (621)
Q Consensus 399 ~~~~~~-~~~~-------~~h~~~v~~~~~spdg~~l~s~s-----~dg~i~iw~~~~~~~~~~~~~~~ 454 (621)
.+++.. ..+. ..+...+..++|+|||+.|+++. .|+.|.|||..++++...+..+.
T Consensus 457 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 457 KNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 525 (543)
T ss_dssp TCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred CCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCCC
Confidence 999877 4431 23567899999999999988763 47999999999999988877543
No 128
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=2.8e-26 Score=232.21 Aligned_cols=223 Identities=13% Similarity=0.151 Sum_probs=175.5
Q ss_pred CCCeEEEeccccccCCcceEE-EEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEcc
Q psy15549 13 RDPVLSVDIQLKQEKDNCYRI-VTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP 91 (621)
Q Consensus 13 ~~~v~~l~~spd~~~~~~~~l-~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 91 (621)
...+.+++|+|+++ +| ++++.|+.|+ +||+.+++... .+..+. .|.+++|+|
T Consensus 31 ~~~~~~~~~s~dg~-----~l~~~~~~d~~i~--------------v~d~~~~~~~~-------~~~~~~-~v~~~~~sp 83 (391)
T 1l0q_A 31 GSNPMGAVISPDGT-----KVYVANAHSNDVS--------------IIDTATNNVIA-------TVPAGS-SPQGVAVSP 83 (391)
T ss_dssp SSSEEEEEECTTSS-----EEEEEEGGGTEEE--------------EEETTTTEEEE-------EEECSS-SEEEEEECT
T ss_pred CCCcceEEECCCCC-----EEEEECCCCCeEE--------------EEECCCCeEEE-------EEECCC-CccceEECC
Confidence 34699999999998 65 7788999999 88887665432 244343 899999999
Q ss_pred CCCEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEE-EEEeCCCcEEEEEccCCCCCCCCC
Q psy15549 92 NGELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELL-ASGDDESTIIVWKQKTDQDLPEFP 168 (621)
Q Consensus 92 dg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l-~s~s~dg~i~vwd~~~~~~~~~~~ 168 (621)
++++|++++ ++.|++|++..+ .....+.. ...+.+++|+|++++| ++++.++.|++||+.+++..
T Consensus 84 dg~~l~~~~~~~~~v~v~d~~~~-------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~---- 151 (391)
T 1l0q_A 84 DGKQVYVTNMASSTLSVIDTTSN-------TVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI---- 151 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTT-------EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE----
T ss_pred CCCEEEEEECCCCEEEEEECCCC-------eEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE----
Confidence 999886544 688999999876 44444443 4578999999999977 67888999999999887643
Q ss_pred CCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCC
Q psy15549 169 SSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHL-ISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQ 247 (621)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 247 (621)
..+..+ ..+.+++|+|++++| ++++.++.|++||+.+++.+..+. +...+.+++|+|+++
T Consensus 152 -----------------~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~ 212 (391)
T 1l0q_A 152 -----------------NTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGT 212 (391)
T ss_dssp -----------------EEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSS
T ss_pred -----------------EEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCC
Confidence 333333 457999999999887 567788999999999998887775 556789999999999
Q ss_pred EEEEEe---CCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEec
Q psy15549 248 YVATLS---SDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAP 317 (621)
Q Consensus 248 ~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 317 (621)
+|++++ .++.|++||+.+++.+..+..+ ..+.+++|+|+|++++++
T Consensus 213 ~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~------------------------~~~~~~~~s~dg~~l~~s 261 (391)
T 1l0q_A 213 KAYVTNVDKYFNTVSMIDTGTNKITARIPVG------------------------PDPAGIAVTPDGKKVYVA 261 (391)
T ss_dssp EEEEEEECSSCCEEEEEETTTTEEEEEEECC------------------------SSEEEEEECTTSSEEEEE
T ss_pred EEEEEecCcCCCcEEEEECCCCeEEEEEecC------------------------CCccEEEEccCCCEEEEE
Confidence 999888 6899999999998877665422 134789999999887544
No 129
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.96 E-value=1.8e-27 Score=270.68 Aligned_cols=371 Identities=8% Similarity=-0.004 Sum_probs=265.1
Q ss_pred ceeeecCCCCeEEEeccccccCCcceEEEEecCC----ceEEeeeccCccccccceeEEeccccccccceeecccccccc
Q psy15549 6 PEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGAD----SHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQ 81 (621)
Q Consensus 6 ~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~d----g~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~ 81 (621)
+..+..|...|.+++|||||+ +||+++.+ +...|| +|++.++.. ..+..|.
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~-----~la~~s~~~~~~~~~~i~------------~~d~~~g~~--------~~lt~~~ 99 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGR-----KIAIRVMRGSSLNTADLY------------FYNGENGEI--------KRITYFS 99 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSS-----EEEEEEEESTTCCEEEEE------------EEETTTTEE--------EECCCCC
T ss_pred EEEeeeCCCcccCeEECCCCC-----EEEEEEeeccCCCCCeEE------------EEECCCCCe--------EEcccCC
Confidence 345567888999999999999 99987643 433433 888876542 2367788
Q ss_pred CcE-------EEEEEccCCCEEEEEcC-----C--ceEEEEeccCccccccc----------------------------
Q psy15549 82 KAV-------NVVRFSPNGELLASGDD-----V--GKEIWYLTERESGIANV---------------------------- 119 (621)
Q Consensus 82 ~~V-------~~l~~spdg~~las~~d-----~--~v~iw~~~~~~~~~~~~---------------------------- 119 (621)
..+ .+++|||||+++++++. . .+.+|++..+.......
T Consensus 100 ~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~ 179 (1045)
T 1k32_A 100 GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGY 179 (1045)
T ss_dssp EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTC
T ss_pred CcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccc
Confidence 888 99999999997777663 2 25556554432100000
Q ss_pred --------------eecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeee
Q psy15549 120 --------------EFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVT 185 (621)
Q Consensus 120 --------------~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (621)
.....+.+|...+.++.|+++ .++++++.|+.++||.+...... .
T Consensus 180 ~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~--------------------~ 238 (1045)
T 1k32_A 180 RGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKD--------------------L 238 (1045)
T ss_dssp CSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCS--------------------C
T ss_pred cCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCc--------------------c
Confidence 011233567888999999988 66677788899999987642211 1
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEecc-----------CCcceEEEEEc-CCCCEEEEEe
Q psy15549 186 KILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTE-----------HKKFVQGVAWD-PKNQYVATLS 253 (621)
Q Consensus 186 ~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~v~~l~~s-p~~~~l~s~~ 253 (621)
..+..|. .+..++|+|||++|+++. ++.|++||+... .+..+.. |...+.+++|+ |+|++|++++
T Consensus 239 ~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~ 315 (1045)
T 1k32_A 239 RKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS 315 (1045)
T ss_dssp EECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE
T ss_pred eEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE
Confidence 3334444 466779999999998885 899999999544 3445544 33468999999 9999999887
Q ss_pred CCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCccc-ceeeeeecCCCCeEEeccccccCCCCCCc-ce
Q psy15549 254 SDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKS-FFRRLTFSPDGQLLIAPSGCLENSDSTRK-PI 331 (621)
Q Consensus 254 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~spdg~~l~~~s~~~~~~d~~i~-~~ 331 (621)
++.|.+|++.++.... +. .+.. .+..++|+ ||+.|++++ .+..+. +|
T Consensus 316 -~~~i~~~~~~~~~~~~-~~-----------------------~~~~~~~~~~~~s-dg~~l~~~s-----~~~~l~~~~ 364 (1045)
T 1k32_A 316 -RGQAFIQDVSGTYVLK-VP-----------------------EPLRIRYVRRGGD-TKVAFIHGT-----REGDFLGIY 364 (1045)
T ss_dssp -TTEEEEECTTSSBEEE-CS-----------------------CCSCEEEEEECSS-SEEEEEEEE-----TTEEEEEEE
T ss_pred -cCEEEEEcCCCCceEE-cc-----------------------CCCcceEEeeeEc-CCCeEEEEE-----CCCceEEEE
Confidence 8899999998766433 21 1122 56889999 999999887 333333 33
Q ss_pred eeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEeccc
Q psy15549 332 SVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIH 411 (621)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h 411 (621)
+... .....+..+...+..+.|+| +++.|++++.++.|++||+.+++..... .+|
T Consensus 365 d~~~--------~~~~~l~~~~~~~~~~~~Sp----------------DG~~la~~~~~~~v~~~d~~tg~~~~~~-~~~ 419 (1045)
T 1k32_A 365 DYRT--------GKAEKFEENLGNVFAMGVDR----------------NGKFAVVANDRFEIMTVDLETGKPTVIE-RSR 419 (1045)
T ss_dssp ETTT--------CCEEECCCCCCSEEEEEECT----------------TSSEEEEEETTSEEEEEETTTCCEEEEE-ECS
T ss_pred ECCC--------CCceEecCCccceeeeEECC----------------CCCEEEEECCCCeEEEEECCCCceEEec-cCC
Confidence 4321 12223335556667777776 7899999999999999999999877665 358
Q ss_pred ccceEEEEEcCCCCeEEEEeCCC----------cEEEEEecCCcCCcccCCCCCcccccCCCCCCCCcccCCCcccHHHh
Q psy15549 412 YTKLTDITWSSDGKVLIASSTDG----------YCSIISFGDNEIGIPYVPPSGEESKENDPTKGEPVRSEDKPRSAEQA 481 (621)
Q Consensus 412 ~~~v~~~~~spdg~~l~s~s~dg----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~w 481 (621)
...+.+++|||||++|++++.++ .|++||+.+++ ...+..+......+.|+++|+.++..+.++....|
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP 498 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCc
Confidence 88999999999999999887654 89999999887 55666666667778899999988877766665555
Q ss_pred c
Q psy15549 482 K 482 (621)
Q Consensus 482 ~ 482 (621)
.
T Consensus 499 ~ 499 (1045)
T 1k32_A 499 D 499 (1045)
T ss_dssp C
T ss_pred c
Confidence 5
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=2.4e-26 Score=253.00 Aligned_cols=329 Identities=11% Similarity=0.138 Sum_probs=234.4
Q ss_pred CCCeEEEeccccccCCcceEEEEecC-Cc-----eEEeeeccCccccccceeEEeccccccccceeecccccccc-----
Q psy15549 13 RDPVLSVDIQLKQEKDNCYRIVTGGA-DS-----HVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQ----- 81 (621)
Q Consensus 13 ~~~v~~l~~spd~~~~~~~~l~tg~~-dg-----~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~----- 81 (621)
...|.+++|||||+ +|++++. |+ .|. +||+.+++.... +..+.
T Consensus 36 ~~~~~~~~~SpdG~-----~la~~~~~d~~~~~~~i~--------------~~d~~~g~~~~~-------~~~~~~~~~~ 89 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-----RVTFLRGKDSDRNQLDLW--------------SYDIGSGQTRLL-------VDSKVVLPGT 89 (741)
T ss_dssp CCCCEEEEECTTSS-----EEEEEECCSSCTTEEEEE--------------EEETTTCCEEEE-------ECGGGTC---
T ss_pred CCCCCCceEecCCC-----EEEEEeccCCCCcccEEE--------------EEECCCCceeEc-------cchhhccccc
Confidence 44799999999999 9999988 88 787 777766543221 11221
Q ss_pred -------------------CcEEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCC
Q psy15549 82 -------------------KAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 142 (621)
Q Consensus 82 -------------------~~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~ 142 (621)
..|.+++|||||++|++++++.|.+|++..+.. .....+..|...+..++|+|||+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~-----~~~~~l~~~~~~~~~~~~SPDG~ 164 (741)
T 2ecf_A 90 ETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGK-----AAVRQLTHGEGFATDAKLSPKGG 164 (741)
T ss_dssp -----------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCST-----TSCCBCCCSSSCEEEEEECTTSS
T ss_pred ccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCc-----ceEEEcccCCcccccccCCCCCC
Confidence 348899999999999999999999999986510 03445667888899999999999
Q ss_pred EEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCC----------------CeEEEEECCCCCE
Q psy15549 143 LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLE----------------DVYDISWSPTSTH 206 (621)
Q Consensus 143 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~v~~i~~spd~~~ 206 (621)
+|++++. +.|++||+.+++.... ...+.. .+.+++|+|||++
T Consensus 165 ~la~~~~-~~i~~~d~~~g~~~~~---------------------~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~ 222 (741)
T 2ecf_A 165 FVSFIRG-RNLWVIDLASGRQMQL---------------------TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA 222 (741)
T ss_dssp EEEEEET-TEEEEEETTTTEEEEC---------------------CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC
T ss_pred EEEEEeC-CcEEEEecCCCCEEEe---------------------ccCCccceeccccceeeeeccccccceEECCCCCE
Confidence 9999884 6899999988754211 111211 2478999999999
Q ss_pred EEEEeCCC---------------------------------eEEEEECCC-CcEEEEec--cCCcceEEEEEcCCCCEEE
Q psy15549 207 LISGSVDN---------------------------------TAIMWDVHK-GKNLGILT--EHKKFVQGVAWDPKNQYVA 250 (621)
Q Consensus 207 l~s~~~dg---------------------------------~i~vwd~~~-~~~~~~~~--~~~~~v~~l~~sp~~~~l~ 250 (621)
|++++.|+ .|++||+.+ ++...... .|...+..++| |||++|+
T Consensus 223 l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~ 301 (741)
T 2ecf_A 223 IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLS 301 (741)
T ss_dssp EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEE
T ss_pred EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEE
Confidence 99988765 889999988 87655443 47788999999 9999999
Q ss_pred EEeC-----CCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCC
Q psy15549 251 TLSS-----DRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSD 325 (621)
Q Consensus 251 s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d 325 (621)
+++. +..|++||+.+++....+..+... .-..+..++|+|||++++++. .+
T Consensus 302 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~-------------------~~~~~~~~~~spdg~~~~~~~-----~~ 357 (741)
T 2ecf_A 302 FQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT-------------------WVPLHNSLRFLDDGSILWSSE-----RT 357 (741)
T ss_dssp EEEEETTSSEEEEEEEETTTCCEEEEEEEECSS-------------------CCCCCSCCEECTTSCEEEEEC-----TT
T ss_pred EEEecccCCeEEEEEEECCCCceEEEEEcCCCC-------------------cCCcCCceEECCCCeEEEEec-----CC
Confidence 7764 567999999988766554321100 000235789999999777776 77
Q ss_pred CCCcceeeeeeeeecccCCCceecCCcccceeee-eccceeeecCCCCCCCCccCCCcEEEEEEc-CC--cEEEEeCCC-
Q psy15549 326 STRKPISVTHVFTRACLNKPAVCLPSLQYYSVAV-KCCPVLFELKPSDDKPLFKLPYRIVIAVAT-EN--NILLYDTQH- 400 (621)
Q Consensus 326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~- 400 (621)
+..++|.+... .. ...+..+...+..+ .|+| +++.+++.+. ++ .++||++..
T Consensus 358 g~~~l~~~~~~------~~-~~~l~~~~~~v~~~~~~s~----------------dg~~l~~~~~~~~~~~~~l~~~~~~ 414 (741)
T 2ecf_A 358 GFQHLYRIDSK------GK-AAALTHGNWSVDELLAVDE----------------KAGLAYFRAGIESARESQIYAVPLQ 414 (741)
T ss_dssp SSCEEEEECSS------SC-EEESCCSSSCEEEEEEEET----------------TTTEEEEEECSSCTTCBEEEEEETT
T ss_pred CccEEEEEcCC------CC-eeeeeecceEEEeEeEEeC----------------CCCEEEEEEeCCCCceEEEEEEEcC
Confidence 88888865411 11 33444444445444 3555 6677765554 44 899999865
Q ss_pred CceeEEEecccccceEEEEEcCCCCeEEEEeCC----CcEEEEEecCC
Q psy15549 401 ASPFAFIANIHYTKLTDITWSSDGKVLIASSTD----GYCSIISFGDN 444 (621)
Q Consensus 401 ~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~d----g~i~iw~~~~~ 444 (621)
+.....+. ....+.+++|||||++|+....+ +.+.+|+...+
T Consensus 415 g~~~~~l~--~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 415 GGQPQRLS--KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CCCCEECC--CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCCeeecc--cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 55455553 25678899999999988876443 46888887644
No 131
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=3.6e-26 Score=250.90 Aligned_cols=323 Identities=11% Similarity=0.067 Sum_probs=220.2
Q ss_pred CCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccC---cEEEEEEc
Q psy15549 14 DPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQK---AVNVVRFS 90 (621)
Q Consensus 14 ~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~s 90 (621)
..+.+++|+|||+ ++++ +.||.|+ +||+.+++.... +..|.. .|.+++||
T Consensus 17 ~~~~~~~~spdg~-----~~~~-~~dg~i~--------------~~d~~~g~~~~~-------~~~~~~~~~~v~~~~~S 69 (723)
T 1xfd_A 17 IHDPEAKWISDTE-----FIYR-EQKGTVR--------------LWNVETNTSTVL-------IEGKKIESLRAIRYEIS 69 (723)
T ss_dssp CCCCCCCBSSSSC-----BCCC-CSSSCEE--------------EBCGGGCCCEEE-------ECTTTTTTTTCSEEEEC
T ss_pred ccccccEEcCCCc-----EEEE-eCCCCEE--------------EEECCCCcEEEE-------eccccccccccceEEEC
Confidence 3578999999997 7766 7899999 888887755332 444544 49999999
Q ss_pred cCCCEEEEEcC----------CceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccC
Q psy15549 91 PNGELLASGDD----------VGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKT 160 (621)
Q Consensus 91 pdg~~las~~d----------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~ 160 (621)
|||++|+++++ +.+.+|++..+.. ..+....+|...+..++|||||++||+++. +.|++||+.+
T Consensus 70 pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~ 143 (723)
T 1xfd_A 70 PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-----QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG 143 (723)
T ss_dssp TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-----EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS
T ss_pred CCCCEEEEEecCccceeecceeeEEEEECCCCce-----EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC
Confidence 99999999863 5678999987632 223334456666889999999999999886 7899999988
Q ss_pred CCCCCCCCCCCcccccccccceeeeeeecCCCC------------------CeEEEEECCCCCEEEEEeCCC--------
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLE------------------DVYDISWSPTSTHLISGSVDN-------- 214 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~v~~i~~spd~~~l~s~~~dg-------- 214 (621)
++.. .....+.. .+.+++|+|||++|++++.++
T Consensus 144 g~~~---------------------~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~ 202 (723)
T 1xfd_A 144 KQAI---------------------RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL 202 (723)
T ss_dssp SCCE---------------------EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred CceE---------------------EEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEe
Confidence 7643 22222222 347899999999999987543
Q ss_pred --------------------------eEEEEECCCCcEEEEeccC------CcceEEEEEcCCCCEEEEEeCC----CcE
Q psy15549 215 --------------------------TAIMWDVHKGKNLGILTEH------KKFVQGVAWDPKNQYVATLSSD----RSL 258 (621)
Q Consensus 215 --------------------------~i~vwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~~l~s~~~d----g~i 258 (621)
.|++||+.+++....+..+ ...+..++|+|||++|++.+.. ..|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 282 (723)
T 1xfd_A 203 PTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSIL 282 (723)
T ss_dssp CCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEE
T ss_pred eccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEE
Confidence 7999999988865666544 6678999999999988776543 579
Q ss_pred EEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeee
Q psy15549 259 RTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFT 338 (621)
Q Consensus 259 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~ 338 (621)
++||+.+++....+....... .......++|+|||+.|+..+.. .++..
T Consensus 283 ~~~d~~~g~~~~~~~~~~~~~------------------~~~~~~~~~~spdg~~l~~~~~~---~~~~~---------- 331 (723)
T 1xfd_A 283 TLCDATTGVCTKKHEDESEAW------------------LHRQNEEPVFSKDGRKFFFIRAI---PQGGR---------- 331 (723)
T ss_dssp EEEETTTCCEEEEEEEECSSC------------------CCCCCCCCEECTTSCSEEEEEEE---CCSSS----------
T ss_pred EEEeCCCCcceEEEEeccCCE------------------EeccCCCceEcCCCCeEEEEEec---ccCCC----------
Confidence 999999887655432110000 00001368999999988765210 01000
Q ss_pred ecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEe-CCCCce--eEEEecccccce
Q psy15549 339 RACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYD-TQHASP--FAFIANIHYTKL 415 (621)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~--~~~~~~~h~~~v 415 (621)
.....|++|| ..++.. ...+.. +...+
T Consensus 332 -------------------------------------------------~~~~~l~~~d~~~~~~~~~~~~l~~-~~~~~ 361 (723)
T 1xfd_A 332 -------------------------------------------------GKFYHITVSSSQPNSSNDNIQSITS-GDWDV 361 (723)
T ss_dssp -------------------------------------------------SCEEEEEEECSSCCSSSCCCCBSCC-SSSCE
T ss_pred -------------------------------------------------cceeEEEEEeccCCCCccceeEeec-CCeEE
Confidence 0012567777 344431 344432 23344
Q ss_pred EE-EEEcCCCCeEEEEeCC---CcEEEEEecCCc--CCcccCC---CCCcccccCCCCCCCCccc
Q psy15549 416 TD-ITWSSDGKVLIASSTD---GYCSIISFGDNE--IGIPYVP---PSGEESKENDPTKGEPVRS 471 (621)
Q Consensus 416 ~~-~~~spdg~~l~s~s~d---g~i~iw~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~s 471 (621)
.. ++|+|||+.|+..+.+ +.++||++.... ....+.. +...+..+.++++|+.++.
T Consensus 362 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL 426 (723)
T ss_dssp EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence 44 6999999999876655 889999997532 2333433 3455667889999986653
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=4.4e-26 Score=238.64 Aligned_cols=336 Identities=9% Similarity=0.035 Sum_probs=241.6
Q ss_pred EEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEc--cCCCCC
Q psy15549 88 RFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQ--KTDQDL 164 (621)
Q Consensus 88 ~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~--~~~~~~ 164 (621)
+|+|++.++++++ ++.|.+||...+ +.+..+..+.. +..++|+|+|++|++++.|+.|++||+ .+++.+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~-------~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSK-------KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTC-------CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCc-------eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence 3889998888887 888999998876 45555553323 889999999999999999999999999 555432
Q ss_pred CCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC----CCCEEEEEeC-CCeEEEEECCCCcEEEEeccC------
Q psy15549 165 PEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP----TSTHLISGSV-DNTAIMWDVHKGKNLGILTEH------ 233 (621)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp----d~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~------ 233 (621)
..+. +...+..++|+| ||++|++++. +++|.+||..+++++..+..+
T Consensus 216 ---------------------~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 216 ---------------------AEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp ---------------------EEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred ---------------------EEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence 3333 455689999999 9999999885 899999999999998887542
Q ss_pred -----CcceEEEEEcCCCCE-EEEEeCCCcEEEEEccCceeee--ecccCCCCCCCccccccccccccccCCcccceeee
Q psy15549 234 -----KKFVQGVAWDPKNQY-VATLSSDRSLRTYSIQSKKVIS--RACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRL 305 (621)
Q Consensus 234 -----~~~v~~l~~sp~~~~-l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 305 (621)
...+.++.++|++.. +++...++.|.+||+.+.+.+. .+. ....+.++
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~------------------------~~~~~~~~ 329 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG------------------------AAPFLHDG 329 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE------------------------CCSSCCCE
T ss_pred cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec------------------------cCcCccCc
Confidence 226889999998765 5566678999999998765433 111 12345789
Q ss_pred eecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEE
Q psy15549 306 TFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVI 385 (621)
Q Consensus 306 ~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 385 (621)
+|+|+|+++++++. .++++.+|+............. . ..|...... ++.++++.++
T Consensus 330 ~~spdg~~l~va~~----~~~~v~v~D~~tg~l~~~i~~g--~-~ph~g~g~~-----------------~~~p~~g~~~ 385 (543)
T 1nir_A 330 GWDSSHRYFMTAAN----NSNKVAVIDSKDRRLSALVDVG--K-TPHPGRGAN-----------------FVHPKYGPVW 385 (543)
T ss_dssp EECTTSCEEEEEEG----GGTEEEEEETTTTEEEEEEECS--S-SBCCTTCEE-----------------EEETTTEEEE
T ss_pred eECCCCCEEEEEec----CCCeEEEEECCCCeEEEeeccC--C-CCCCCCCcc-----------------cCCCCCccEE
Confidence 99999998876653 5788999987532211110000 0 001111111 1122445555
Q ss_pred EEE--cCCcEEEEeCCC-------CceeEEEecccccceEEEEEcCCCCeEEEEe-------CCCcEEEEEecCCcCC-c
Q psy15549 386 AVA--TENNILLYDTQH-------ASPFAFIANIHYTKLTDITWSSDGKVLIASS-------TDGYCSIISFGDNEIG-I 448 (621)
Q Consensus 386 ~~~--~dg~i~iwd~~~-------~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s-------~dg~i~iw~~~~~~~~-~ 448 (621)
+.+ .+++|.+||+.+ .+.+..+. +|...+..++|+|||++|++++ .+++|.+||+.+++.. .
T Consensus 386 ~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~-~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~ 464 (543)
T 1nir_A 386 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 464 (543)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred EeccCCCceEEEEEeCCCCCchhcCeEEEEEE-cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeE
Confidence 554 479999999998 78888885 5878889999999999999987 2789999999999877 3
Q ss_pred cc--------CCCCCcccccCCCCCCCCcccC-----CCcccHHHhccc-CccccccccCCCCCCCcc
Q psy15549 449 PY--------VPPSGEESKENDPTKGEPVRSE-----DKPRSAEQAKGE-GKVLGEKQTGNKVSPTDK 502 (621)
Q Consensus 449 ~~--------~~~~~~~~~~~~~~~~~~~~s~-----~~~~~~~~w~~~-~~~~~~~~~~~~~s~~~~ 502 (621)
.+ ..+...+....|+++|+.+..+ +.++.|.+|+.. ++.+..++......|+++
T Consensus 465 ~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~~~p~g~ 532 (543)
T 1nir_A 465 VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGK 532 (543)
T ss_dssp EECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEE
T ss_pred EeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCCCccCCCee
Confidence 32 3445567788999999977744 357899999944 555555554445556553
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=6.2e-25 Score=249.89 Aligned_cols=329 Identities=12% Similarity=0.086 Sum_probs=231.3
Q ss_pred CeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEecccccccc---ceeeccccccccCcEEEEEEc-
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIA---NVEFASDLSRHQKAVNVVRFS- 90 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~---~~~~~~~~~~h~~~V~~l~~s- 90 (621)
.+.+++|+|||+ +|+++ .++.|. +|++........ ..........|...+.+++||
T Consensus 246 ~~~~~~~SpDG~-----~la~~-~~~~i~--------------~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~ 305 (1045)
T 1k32_A 246 DYYPRHLNTDGR-----RILFS-KGGSIY--------------IFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSP 305 (1045)
T ss_dssp SSCEEEEEESSS-----CEEEE-ETTEEE--------------EECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEE
T ss_pred CcceeeEcCCCC-----EEEEE-eCCEEE--------------EecCCceEeeeeccCcccccccccccccccceeeecC
Confidence 577889999998 88887 488888 555421110000 000000122356679999999
Q ss_pred cCCCEEEEEcCCceEEEEeccCccccccceecccccccCC-CeEEEEECCCCCEEEEEeCCCcEE-EEEccCCCCCCCCC
Q psy15549 91 PNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQK-AVNVVRFSPNGELLASGDDESTII-VWKQKTDQDLPEFP 168 (621)
Q Consensus 91 pdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-~V~~i~~sp~g~~l~s~s~dg~i~-vwd~~~~~~~~~~~ 168 (621)
|||++|++++++.+.+|+...+. ...+..|.. .+..++|+ +|+.|++++.++.+. +|++.++..
T Consensus 306 pdG~~la~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~----- 371 (1045)
T 1k32_A 306 LDGDLIAFVSRGQAFIQDVSGTY--------VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA----- 371 (1045)
T ss_dssp CGGGCEEEEETTEEEEECTTSSB--------EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE-----
T ss_pred CCCCEEEEEEcCEEEEEcCCCCc--------eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc-----
Confidence 99999999998889999887642 223556777 89999999 999999999888888 889877652
Q ss_pred CCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCE
Q psy15549 169 SSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQY 248 (621)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 248 (621)
..+.+|...+..++|+|||++|++++.++.|++||+.+++....+..|...+.+++|+|||++
T Consensus 372 -----------------~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~ 434 (1045)
T 1k32_A 372 -----------------EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF 434 (1045)
T ss_dssp -----------------EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCE
T ss_pred -----------------eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCe
Confidence 233478888999999999999999999999999999999988877789899999999999999
Q ss_pred EEEEeCCC----------cEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecc
Q psy15549 249 VATLSSDR----------SLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPS 318 (621)
Q Consensus 249 l~s~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s 318 (621)
|++++.++ .|++||+.+++ ...+.. +...+..++|+|||++|++++
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~-----------------------~~~~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATT-----------------------ENSHDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSC-----------------------SSSBEEEEEECTTSCEEEEEE
T ss_pred EEEEecCccccccCCCCCeEEEEECCCCc-EEEeeC-----------------------CCcccCCceEcCCCCEEEEEe
Confidence 99887654 89999998877 333321 223356799999999999887
Q ss_pred ccccCCCCCCcceeeeeeeee------------c-ccCC-----------------------CceecCCcccceeeeecc
Q psy15549 319 GCLENSDSTRKPISVTHVFTR------------A-CLNK-----------------------PAVCLPSLQYYSVAVKCC 362 (621)
Q Consensus 319 ~~~~~~d~~i~~~~~~~~~~~------------~-~~~~-----------------------~~~~~~~~~~~~~~~~~~ 362 (621)
.++....|+....... . .... ....+..+...+..+.
T Consensus 491 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~-- 563 (1045)
T 1k32_A 491 -----YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII-- 563 (1045)
T ss_dssp -----SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEE--
T ss_pred -----cccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheE--
Confidence 5555555543211000 0 0000 0001111112222222
Q ss_pred ceeeecCCCCCCCCccCCCcEEEE-------------EEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEE
Q psy15549 363 PVLFELKPSDDKPLFKLPYRIVIA-------------VATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIA 429 (621)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~l~~-------------~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s 429 (621)
+++++..+++ ......|++||+.+++..... ..+.+++|||||++|++
T Consensus 564 --------------~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-----~~v~~~~~S~DG~~l~~ 624 (1045)
T 1k32_A 564 --------------PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-----NNLTDLRLSADRKTVMV 624 (1045)
T ss_dssp --------------ECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-----EEEEEEEECTTSCEEEE
T ss_pred --------------EcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-----cCcceEEECCCCCEEEE
Confidence 2335555554 112457899999888753322 46889999999999999
Q ss_pred EeCCCcEEEEEecCCc
Q psy15549 430 SSTDGYCSIISFGDNE 445 (621)
Q Consensus 430 ~s~dg~i~iw~~~~~~ 445 (621)
++.+ .|++|++.+++
T Consensus 625 ~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 625 RKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EETT-SCEEEEESSCT
T ss_pred EcCC-cEEEEeCccCc
Confidence 9866 89999998876
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=3.1e-24 Score=218.00 Aligned_cols=227 Identities=15% Similarity=0.152 Sum_probs=172.9
Q ss_pred eecCCCCeEEEecccc--------------ccCCcceEEEEecCC------ceEEeeeccCccccccceeEEeccccccc
Q psy15549 9 SWHNRDPVLSVDIQLK--------------QEKDNCYRIVTGGAD------SHVFDYLLKIPHRLKTGKIWYLTERESGI 68 (621)
Q Consensus 9 ~~~h~~~v~~l~~spd--------------~~~~~~~~l~tg~~d------g~v~~~d~~~~~~~~~~~iw~~~~~~~~~ 68 (621)
...|...+.++++++. +. +++.++.+ +.|+ +||+.... .
T Consensus 113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~-----~l~~~s~~~~~~~~~~i~--------------i~d~~g~~-~- 171 (415)
T 2hqs_A 113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRT-----RIAYVVQTNGGQFPYELR--------------VSDYDGYN-Q- 171 (415)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTC-----EEEEEEECSSSSCCEEEE--------------EEETTSCS-C-
T ss_pred EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCC-----EEEEEEecCCCCccceEE--------------EEcCCCCC-C-
Confidence 3456667777777751 33 56655543 6788 99986432 2
Q ss_pred cceeeccccccccCcEEEEEEccCCCEEEEEc-CC---ceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEE
Q psy15549 69 ANVEFASDLSRHQKAVNVVRFSPNGELLASGD-DV---GKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELL 144 (621)
Q Consensus 69 ~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-d~---~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l 144 (621)
..+.+|...|.+++|+|||++|++++ ++ .|++|++..+. . ..+..|...+.+++|+|+|++|
T Consensus 172 ------~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~-------~-~~l~~~~~~~~~~~~spdg~~l 237 (415)
T 2hqs_A 172 ------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-------V-RQVASFPRHNGAPAFSPDGSKL 237 (415)
T ss_dssp ------EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------E-EEEECCSSCEEEEEECTTSSEE
T ss_pred ------EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc-------E-EEeecCCCcccCEEEcCCCCEE
Confidence 23678999999999999999999987 43 79999998762 2 2456678899999999999988
Q ss_pred E-EEeCCCc--EEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeC-CC--eEEE
Q psy15549 145 A-SGDDEST--IIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSV-DN--TAIM 218 (621)
Q Consensus 145 ~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~-dg--~i~v 218 (621)
+ +++.++. |++||+.+++. ..+..|...+.+++|+|||++|++++. ++ .|++
T Consensus 238 a~~~~~~g~~~i~~~d~~~~~~----------------------~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 238 AFALSKTGSLNLYVMDLASGQI----------------------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp EEEECTTSSCEEEEEETTTCCE----------------------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred EEEEecCCCceEEEEECCCCCE----------------------EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence 8 6666654 99999988753 455678889999999999999998886 44 6888
Q ss_pred EECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCC---CcEEEEEccCceeeeecccCCCCCCCcccccccccccccc
Q psy15549 219 WDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSD---RSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHD 295 (621)
Q Consensus 219 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (621)
||+.+++. ..+..+...+.+++|+|+|++|++++.+ ..|++||+.+++... +..+
T Consensus 296 ~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~-------------------- 353 (415)
T 2hqs_A 296 VNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSST-------------------- 353 (415)
T ss_dssp EETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCS--------------------
T ss_pred EECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCC--------------------
Confidence 89988764 4555677789999999999999988764 589999998876532 2111
Q ss_pred CCcccceeeeeecCCCCeEEecc
Q psy15549 296 DTMKSFFRRLTFSPDGQLLIAPS 318 (621)
Q Consensus 296 ~~~~~~i~~~~~spdg~~l~~~s 318 (621)
..+.+++|+|||++|++++
T Consensus 354 ----~~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 354 ----FLDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp ----SSCEEEEECTTSSEEEEEE
T ss_pred ----CCcCCeEEcCCCCEEEEEE
Confidence 1457899999999888765
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=9.4e-25 Score=240.24 Aligned_cols=329 Identities=10% Similarity=0.066 Sum_probs=224.1
Q ss_pred cCcEEEEEEccCCCEEEEEc--CC-----ceEEEEeccCccccccceecccccccC------------------------
Q psy15549 81 QKAVNVVRFSPNGELLASGD--DV-----GKEIWYLTERESGIANVEFASDLSRHQ------------------------ 129 (621)
Q Consensus 81 ~~~V~~l~~spdg~~las~~--d~-----~v~iw~~~~~~~~~~~~~~~~~~~~h~------------------------ 129 (621)
...|.+++|||||++|++++ ++ .|.+|++..+. ....+..+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ-------TRLLVDSKVVLPGTETLSDEEKARRERQRIAAM 108 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC-------EEEEECGGGTC--------------------CC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc-------eeEccchhhcccccccccchhhhhhhhhhhccc
Confidence 45799999999999999887 45 68999988763 222222222
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEccCCC--CCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEE
Q psy15549 130 KAVNVVRFSPNGELLASGDDESTIIVWKQKTDQ--DLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHL 207 (621)
Q Consensus 130 ~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l 207 (621)
..|.+++|+|||++|++++. +.|++||+.++. .. ..+..|...+.+++|+|||++|
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~---------------------~~l~~~~~~~~~~~~SPDG~~l 166 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV---------------------RQLTHGEGFATDAKLSPKGGFV 166 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC---------------------CBCCCSSSCEEEEEECTTSSEE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE---------------------EEcccCCcccccccCCCCCCEE
Confidence 33789999999999999886 899999998872 22 3345677889999999999999
Q ss_pred EEEeCCCeEEEEECCCCcEEEEeccCCcc----------------eEEEEEcCCCCEEEEEeCCC---------------
Q psy15549 208 ISGSVDNTAIMWDVHKGKNLGILTEHKKF----------------VQGVAWDPKNQYVATLSSDR--------------- 256 (621)
Q Consensus 208 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----------------v~~l~~sp~~~~l~s~~~dg--------------- 256 (621)
++++ ++.|++||+.+++.......+... +.+++|+|||++|++++.|+
T Consensus 167 a~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~ 245 (741)
T 2ecf_A 167 SFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADR 245 (741)
T ss_dssp EEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSC
T ss_pred EEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCc
Confidence 9988 569999999988776555444332 47899999999999988765
Q ss_pred ------------------cEEEEEccC-ceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEec
Q psy15549 257 ------------------SLRTYSIQS-KKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAP 317 (621)
Q Consensus 257 ------------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 317 (621)
.|.+||+.+ ++...... ...+...+.+++| |||++|+++
T Consensus 246 ~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~---------------------~~~~~~~~~~~~~-pDg~~l~~~ 303 (741)
T 2ecf_A 246 TDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDL---------------------GKEQDIYLARVNW-RDPQHLSFQ 303 (741)
T ss_dssp EEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECC---------------------CSCSSEEEEEEEE-EETTEEEEE
T ss_pred ccceEeecCCCCCCCCeeEEEEEECCCCCceEEecC---------------------CCCcceEEEEEEe-CCCCEEEEE
Confidence 778888877 65433221 0123456789999 999999977
Q ss_pred cccccCCCCCCcceeeeeeeeecccCCCceecCCcc-c---ceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcE
Q psy15549 318 SGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQ-Y---YSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNI 393 (621)
Q Consensus 318 s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 393 (621)
+......+..+.+|+...... ...+..+. . .+.. ..|+++++++++++.++.+
T Consensus 304 ~~~~~~~~~~i~~~d~~~g~~-------~~~~~~~~~~~~~~~~~----------------~~~spdg~~~~~~~~~g~~ 360 (741)
T 2ecf_A 304 RQSRDQKKLDLVEVTLASNQQ-------RVLAHETSPTWVPLHNS----------------LRFLDDGSILWSSERTGFQ 360 (741)
T ss_dssp EEETTSSEEEEEEEETTTCCE-------EEEEEEECSSCCCCCSC----------------CEECTTSCEEEEECTTSSC
T ss_pred EecccCCeEEEEEEECCCCce-------EEEEEcCCCCcCCcCCc----------------eEECCCCeEEEEecCCCcc
Confidence 631111345566666432110 00000000 0 1112 3344577877777788877
Q ss_pred EEEeCC-CCceeEEEecccccceEEE-EEcCCCCeEEEE-eCCC--cEEEEEecC-CcCCcccCCCCCcccccCCCCCCC
Q psy15549 394 LLYDTQ-HASPFAFIANIHYTKLTDI-TWSSDGKVLIAS-STDG--YCSIISFGD-NEIGIPYVPPSGEESKENDPTKGE 467 (621)
Q Consensus 394 ~iwd~~-~~~~~~~~~~~h~~~v~~~-~~spdg~~l~s~-s~dg--~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 467 (621)
.||.+. .+. ...+ ..|...|..+ .|+|||+.|+.. +.++ .++||++.. +.....+.. ...+..+.|+++|+
T Consensus 361 ~l~~~~~~~~-~~~l-~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~ 437 (741)
T 2ecf_A 361 HLYRIDSKGK-AAAL-THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNAS 437 (741)
T ss_dssp EEEEECSSSC-EEES-CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSS
T ss_pred EEEEEcCCCC-eeee-eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCC
Confidence 777654 334 5555 4567778887 599999987654 4555 899999974 555566655 44456788999999
Q ss_pred CcccC----CCcccHHHhcccCcc
Q psy15549 468 PVRSE----DKPRSAEQAKGEGKV 487 (621)
Q Consensus 468 ~~~s~----~~~~~~~~w~~~~~~ 487 (621)
.++.. ..+..+.+++..++.
T Consensus 438 ~l~~~~~~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 438 VYVDSWSNNSTPPQIELFRANGEK 461 (741)
T ss_dssp EEEEEEEETTEEEEEEEEETTSCE
T ss_pred EEEEEecCCCCCCeEEEEEcCCCe
Confidence 76644 234566777665543
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=8.7e-24 Score=231.16 Aligned_cols=299 Identities=13% Similarity=0.138 Sum_probs=204.3
Q ss_pred CcEEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccC-
Q psy15549 82 KAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKT- 160 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~- 160 (621)
..|.+++|||| +.++.+.++.+.+|++..+ . ...+..+...+.+++|+|||++|+++ .++.|++|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~-------~-~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~ 151 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLAR-------K-VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKL 151 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTT-------E-EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCT
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCC-------c-eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcc
Confidence 56999999999 7777778899999999765 2 22344566778899999999999995 679999999988
Q ss_pred ----CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe-------------------------
Q psy15549 161 ----DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS------------------------- 211 (621)
Q Consensus 161 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~------------------------- 211 (621)
++............ .+.. .....+...+.++.|+|||++|++++
T Consensus 152 ~~~~g~~~~~~~~~~~~~------~~g~-~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 224 (706)
T 2z3z_A 152 GEGMSRAIAVTIDGTETL------VYGQ-AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLY 224 (706)
T ss_dssp TSCCCCCEESCSCCBTTE------EESS-CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEEC
T ss_pred cccCCCcEEeccCCCCCe------Eccc-chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEee
Confidence 65432111000000 0000 00111223358899999999999987
Q ss_pred --------CCCeEEEEECCCCcEEEEec--cCCcceEEEEEcCCCCEEEEEeCCC-----cEEEEEccCceeeeecccCC
Q psy15549 212 --------VDNTAIMWDVHKGKNLGILT--EHKKFVQGVAWDPKNQYVATLSSDR-----SLRTYSIQSKKVISRACRSK 276 (621)
Q Consensus 212 --------~dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~ 276 (621)
.+..|++||+.+++...... .|...+.+++|+|||++|++++.++ .|.+||+.+++....+....
T Consensus 225 y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~ 304 (706)
T 2z3z_A 225 YPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET 304 (706)
T ss_dssp CCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred CCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc
Confidence 44689999999887654442 4667899999999999999888775 89999999883333321100
Q ss_pred CCCCCccccccccccccccCCcccceeeeeecC--CCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCccc
Q psy15549 277 LPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSP--DGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQY 354 (621)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp--dg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (621)
. ......+.+++|+| ||++++++. .++.+++|.+... ......+..+..
T Consensus 305 ~------------------~~~~~~~~~~~~sp~~dg~~l~~~~-----~~g~~~l~~~~~~------~~~~~~l~~~~~ 355 (706)
T 2z3z_A 305 D------------------KHYVEPLHPLTFLPGSNNQFIWQSR-----RDGWNHLYLYDTT------GRLIRQVTKGEW 355 (706)
T ss_dssp C------------------SSCCCCCSCCEECTTCSSEEEEEEC-----TTSSCEEEEEETT------SCEEEECCCSSS
T ss_pred C------------------CCeECccCCceeecCCCCEEEEEEc-----cCCccEEEEEECC------CCEEEecCCCCe
Confidence 0 00011235789999 999888877 7888888876510 112223344444
Q ss_pred ceee-eeccceeeecCCCCCCCCccCCCcEEEEEEcC-C----cEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEE
Q psy15549 355 YSVA-VKCCPVLFELKPSDDKPLFKLPYRIVIAVATE-N----NILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLI 428 (621)
Q Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g----~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~ 428 (621)
.+.. +.|+| +++.|+.++.+ + .|+.||..+++ ...+ .|...+.+++|||||++|+
T Consensus 356 ~v~~~~~~sp----------------dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l--~~~~~~~~~~~spdg~~l~ 416 (706)
T 2z3z_A 356 EVTNFAGFDP----------------KGTRLYFESTEASPLERHFYCIDIKGGK-TKDL--TPESGMHRTQLSPDGSAII 416 (706)
T ss_dssp CEEEEEEECT----------------TSSEEEEEESSSCTTCBEEEEEETTCCC-CEES--CCSSSEEEEEECTTSSEEE
T ss_pred EEEeeeEEcC----------------CCCEEEEEecCCCCceEEEEEEEcCCCC-ceec--cCCCceEEEEECCCCCEEE
Confidence 4443 46665 66777666654 3 67778887765 3333 2667799999999999888
Q ss_pred EEeCC----CcEEEEEecCCc
Q psy15549 429 ASSTD----GYCSIISFGDNE 445 (621)
Q Consensus 429 s~s~d----g~i~iw~~~~~~ 445 (621)
.++.+ +.|++|++.+++
T Consensus 417 ~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 417 DIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEECSSCSCEEEEEESSSCE
T ss_pred EEecCCCCCcEEEEEECCCCe
Confidence 76543 569999998876
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=1.6e-23 Score=206.65 Aligned_cols=280 Identities=8% Similarity=0.054 Sum_probs=193.0
Q ss_pred EeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCCEEEE
Q psy15549 19 VDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLAS 98 (621)
Q Consensus 19 l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 98 (621)
..|.+++. ..+++++.++.|. +||..+++.... +..+...+ +++|+|+|++|++
T Consensus 3 ~~~~~~~~----~~~v~~~~~~~v~--------------~~d~~~~~~~~~-------~~~~~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 3 AMFQTTSN----FGIVVEQHLRRIS--------------FFSTDTLEILNQ-------ITLGYDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ----CCCC----EEEEEEGGGTEEE--------------EEETTTCCEEEE-------EECCCCEE-EEEECSSSCEEEE
T ss_pred eeEcCCCC----EEEEEecCCCeEE--------------EEeCcccceeee-------EEccCCcc-eEEEcCCCCEEEE
Confidence 34666555 4688888999999 888876654322 33445556 9999999997766
Q ss_pred Ec--CCceEEEEeccCcccccccee-cccccccCCCeEEEEECCCCCEEEEEeCCC---cEEEEEccCCCCCCCCCCCCc
Q psy15549 99 GD--DVGKEIWYLTERESGIANVEF-ASDLSRHQKAVNVVRFSPNGELLASGDDES---TIIVWKQKTDQDLPEFPSSNL 172 (621)
Q Consensus 99 ~~--d~~v~iw~~~~~~~~~~~~~~-~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~ 172 (621)
++ ++.|.+|+...+ .. ...+..+..+..+++|+|+|++|+++..++ .|.+||+.+++.+
T Consensus 57 ~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~-------- 121 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLE-------PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI-------- 121 (331)
T ss_dssp EESTTCEEEEEECSSS-------SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE--------
T ss_pred EeCCCCeEEEEECCCC-------ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeE--------
Confidence 55 678999999876 22 444555666655599999999999655553 8999999887643
Q ss_pred ccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-eCCCe-EEEEECCCCcEE----EEeccCCcceEEEEEcCCC
Q psy15549 173 DEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISG-SVDNT-AIMWDVHKGKNL----GILTEHKKFVQGVAWDPKN 246 (621)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~-~~dg~-i~vwd~~~~~~~----~~~~~~~~~v~~l~~sp~~ 246 (621)
..+. +.....+++|+|+|++|+++ ..++. |.+|++.....+ .........+..++|+|+|
T Consensus 122 -------------~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg 187 (331)
T 3u4y_A 122 -------------STIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG 187 (331)
T ss_dssp -------------EEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS
T ss_pred -------------EEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCC
Confidence 2222 34457899999999866555 55578 999998754332 1112344567899999999
Q ss_pred CEEEEEe-CCCcEEEEEccCcee---eeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecccccc
Q psy15549 247 QYVATLS-SDRSLRTYSIQSKKV---ISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLE 322 (621)
Q Consensus 247 ~~l~s~~-~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~ 322 (621)
++|++++ .++.|.+||+.+++. +..+.. ...+..++|+|||++++++..
T Consensus 188 ~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~------------------------~~~~~~~~~spdg~~l~v~~~--- 240 (331)
T 3u4y_A 188 NFAFVANLIGNSIGILETQNPENITLLNAVGT------------------------NNLPGTIVVSRDGSTVYVLTE--- 240 (331)
T ss_dssp SEEEEEETTTTEEEEEECSSTTSCEEEEEEEC------------------------SSCCCCEEECTTSSEEEEECS---
T ss_pred CEEEEEeCCCCeEEEEECCCCcccceeeeccC------------------------CCCCceEEECCCCCEEEEEEc---
Confidence 9766555 588999999998876 444431 123467999999998876541
Q ss_pred CCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCc
Q psy15549 323 NSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHAS 402 (621)
Q Consensus 323 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 402 (621)
.++.|.+||+.+++
T Consensus 241 ------------------------------------------------------------------~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 241 ------------------------------------------------------------------STVDVFNFNQLSGT 254 (331)
T ss_dssp ------------------------------------------------------------------SEEEEEEEETTTTE
T ss_pred ------------------------------------------------------------------CCCEEEEEECCCCc
Confidence 23557888888876
Q ss_pred e--eEEEecc---cc---cceEEEEEcCCCCeEEEEe-CCCcEEEEEecCCcC
Q psy15549 403 P--FAFIANI---HY---TKLTDITWSSDGKVLIASS-TDGYCSIISFGDNEI 446 (621)
Q Consensus 403 ~--~~~~~~~---h~---~~v~~~~~spdg~~l~s~s-~dg~i~iw~~~~~~~ 446 (621)
. +..+... +. .....++|+|||++|++++ .++.|.+|++.....
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 255 LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred eeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 5 3332211 11 1235689999999887655 567999999987654
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.7e-23 Score=202.53 Aligned_cols=267 Identities=15% Similarity=0.134 Sum_probs=190.1
Q ss_pred EEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCCEEEEEcCCceEEEEecc-C
Q psy15549 34 VTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGKEIWYLTE-R 112 (621)
Q Consensus 34 ~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~d~~v~iw~~~~-~ 112 (621)
..++.++.|. +||+.+++.. .+..|...|.+++|+|+|++|++++++.|.+|++.. +
T Consensus 16 ~~~~~~~~i~--------------~~d~~~~~~~--------~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~ 73 (297)
T 2ojh_A 16 PGGSMRSSIE--------------IFNIRTRKMR--------VVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDP 73 (297)
T ss_dssp --CCCCEEEE--------------EEETTTTEEE--------EEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCC
T ss_pred CCCCcceeEE--------------EEeCCCCcee--------eeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCC
Confidence 3456788888 9988766532 245688899999999999999999999999999987 5
Q ss_pred ccccccceeccccccc-CCCeEEEEECCCCCEEEEEe--CCCcEEEEEcc--CCCCCCCCCCCCcccccccccceeeeee
Q psy15549 113 ESGIANVEFASDLSRH-QKAVNVVRFSPNGELLASGD--DESTIIVWKQK--TDQDLPEFPSSNLDEENVNKEHWIVTKI 187 (621)
Q Consensus 113 ~~~~~~~~~~~~~~~h-~~~V~~i~~sp~g~~l~s~s--~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (621)
........| ...+.+++|+|++++|++++ .++.+.||.++ ++.. ..
T Consensus 74 -------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~----------------------~~ 124 (297)
T 2ojh_A 74 -------SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP----------------------RL 124 (297)
T ss_dssp -------SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC----------------------EE
T ss_pred -------CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce----------------------EE
Confidence 223333344 46788999999999999998 44556666554 3331 22
Q ss_pred ecCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEECCC-CcEEEEeccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEcc
Q psy15549 188 LRGHLEDVYDISWSPTSTHLI-SGSVDNTAIMWDVHK-GKNLGILTEHKKFVQGVAWDPKNQYVATLS-SDRSLRTYSIQ 264 (621)
Q Consensus 188 ~~~~~~~v~~i~~spd~~~l~-s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~-~dg~i~iwd~~ 264 (621)
+..+ ..+.+++|+|++++|+ +++.++.+.||++.. +.....+..+...+.+++|+|++++|++++ .++.+++|++.
T Consensus 125 ~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 125 MTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp CCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred eecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence 2333 3489999999999887 677899999998642 334456667888899999999999888776 48999999986
Q ss_pred -CceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccC
Q psy15549 265 -SKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLN 343 (621)
Q Consensus 265 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~ 343 (621)
.+.....+. .+...+.+++|+|+|++|++++. ++....+.
T Consensus 204 ~~~~~~~~~~-----------------------~~~~~~~~~~~s~dg~~l~~~~~-----~~~~~~~~----------- 244 (297)
T 2ojh_A 204 VDGSSVERIT-----------------------DSAYGDWFPHPSPSGDKVVFVSY-----DADVFDHP----------- 244 (297)
T ss_dssp TTSSCEEECC-----------------------CCSEEEEEEEECTTSSEEEEEEE-----ETTCCSCC-----------
T ss_pred CCCCCcEEEe-----------------------cCCcccCCeEECCCCCEEEEEEc-----CCCCCccc-----------
Confidence 333333332 22345688999999999988762 11000000
Q ss_pred CCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEe-cccccceEEEEEcC
Q psy15549 344 KPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIA-NIHYTKLTDITWSS 422 (621)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~sp 422 (621)
...++.|++||+.+++...... .+|...+.+++|+|
T Consensus 245 -------------------------------------------~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 281 (297)
T 2ojh_A 245 -------------------------------------------RDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP 281 (297)
T ss_dssp -------------------------------------------SSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT
T ss_pred -------------------------------------------ccCceEEEEEecCCCCceeeeccCCCCcccccceECC
Confidence 0023579999998886543331 25778899999999
Q ss_pred CCCeEEEEeCCC
Q psy15549 423 DGKVLIASSTDG 434 (621)
Q Consensus 423 dg~~l~s~s~dg 434 (621)
||++|++++.+.
T Consensus 282 dg~~l~~~~~~~ 293 (297)
T 2ojh_A 282 DGDEFAYVRYFP 293 (297)
T ss_dssp TSSEEEEEEECC
T ss_pred CCCEEEEEEecc
Confidence 999999887653
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=1.2e-22 Score=202.20 Aligned_cols=272 Identities=11% Similarity=0.077 Sum_probs=202.8
Q ss_pred CCCCeEEEeccccccCCcceEEEEecC-------CceEEeeeccCccccccceeEEeccccccccceeeccccccccCcE
Q psy15549 12 NRDPVLSVDIQLKQEKDNCYRIVTGGA-------DSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAV 84 (621)
Q Consensus 12 h~~~v~~l~~spd~~~~~~~~l~tg~~-------dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V 84 (621)
....+..++|+|+++ +|++++. ++.|. +||..+++.... +. ....+
T Consensus 39 ~~~~~~~~~~s~dg~-----~l~~~~~~~~~~~~~~~v~--------------~~d~~~~~~~~~-------~~-~~~~~ 91 (353)
T 3vgz_A 39 VGKGAYEMAYSQQEN-----ALWLATSQSRKLDKGGVVY--------------RLDPVTLEVTQA-------IH-NDLKP 91 (353)
T ss_dssp EESSEEEEEEETTTT-----EEEEEECCCTTTEESEEEE--------------EECTTTCCEEEE-------EE-ESSCC
T ss_pred hccCccceEECCCCC-----EEEEEcCCCcCCCCCccEE--------------EEcCCCCeEEEE-------Ee-cCCCc
Confidence 345788999999998 7777663 56788 777766543222 22 23447
Q ss_pred EEEEEccCCCEEEEEc--CCceEEEEeccCccccccceecccccccCC---------CeEEEEECCCCCEEEEEe--CCC
Q psy15549 85 NVVRFSPNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQK---------AVNVVRFSPNGELLASGD--DES 151 (621)
Q Consensus 85 ~~l~~spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~---------~V~~i~~sp~g~~l~s~s--~dg 151 (621)
..++|+|+|++++++. ++.|.+|+...+ +....+..+.. .+.+++|+|+++++++++ .++
T Consensus 92 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 164 (353)
T 3vgz_A 92 FGATINNTTQTLWFGNTVNSAVTAIDAKTG-------EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKES 164 (353)
T ss_dssp CSEEEETTTTEEEEEETTTTEEEEEETTTC-------CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSC
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEeCCCC-------eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCc
Confidence 7899999999666554 678999998876 33333333321 278899999999877765 478
Q ss_pred cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Q psy15549 152 TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILT 231 (621)
Q Consensus 152 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 231 (621)
.|.+||+.+++.. ..+..+...+.+++|+|++++|++++.++.|.+||+.+++.+..+.
T Consensus 165 ~i~~~d~~~~~~~---------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~ 223 (353)
T 3vgz_A 165 VIWVVDGGNIKLK---------------------TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKK 223 (353)
T ss_dssp EEEEEETTTTEEE---------------------EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred eEEEEcCCCCceE---------------------EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEE
Confidence 9999999887643 3344455568889999999999999999999999999998887765
Q ss_pred c----CCcceEEEEEcCCCCEEEEEeCC-CcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeee
Q psy15549 232 E----HKKFVQGVAWDPKNQYVATLSSD-RSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLT 306 (621)
Q Consensus 232 ~----~~~~v~~l~~sp~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 306 (621)
. +...+.+++|+|++++|++++.+ +.|.+||+.+++.+..+.... ...++
T Consensus 224 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-------------------------~~~~~ 278 (353)
T 3vgz_A 224 LLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-------------------------SLAVL 278 (353)
T ss_dssp CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-------------------------CCCEE
T ss_pred cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-------------------------CceEE
Confidence 4 45567889999999988777654 899999999988776654211 14578
Q ss_pred ecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEE
Q psy15549 307 FSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIA 386 (621)
Q Consensus 307 ~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 386 (621)
|+|+|++++++.
T Consensus 279 ~s~dg~~l~v~~-------------------------------------------------------------------- 290 (353)
T 3vgz_A 279 FNPARNEAYVTH-------------------------------------------------------------------- 290 (353)
T ss_dssp EETTTTEEEEEE--------------------------------------------------------------------
T ss_pred ECCCCCEEEEEE--------------------------------------------------------------------
Confidence 888888665543
Q ss_pred EEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCC
Q psy15549 387 VATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDG 434 (621)
Q Consensus 387 ~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg 434 (621)
..++.|.+||..+++.+..+.. ...+.+++|+|||++|+++..++
T Consensus 291 -~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 291 -RQAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp -TTTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSCEEEEEEECC
T ss_pred -CCCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCCEEEEEEccc
Confidence 1468899999999988887753 34789999999999877776553
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.5e-22 Score=200.54 Aligned_cols=281 Identities=14% Similarity=0.229 Sum_probs=186.9
Q ss_pred EEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCCEEEEEc-C-CceEEEEe
Q psy15549 32 RIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-D-VGKEIWYL 109 (621)
Q Consensus 32 ~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-d-~~v~iw~~ 109 (621)
.+++++.++.|+ +|++....... ... ...|...+.+++|+|+|++|++++ + +.+.+|++
T Consensus 7 l~~~~~~~~~v~--------------~~~~~~~~~~~----~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~ 67 (343)
T 1ri6_A 7 VYIASPESQQIH--------------VWNLNHEGALT----LTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 67 (343)
T ss_dssp EEEEEGGGTEEE--------------EEEECTTSCEE----EEE-EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEEeCCCCCeEE--------------EEEECCCCcEE----Eee-eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEe
Confidence 555558899999 88885321111 111 234677899999999999888877 3 78999999
Q ss_pred ccCccccccceecccccccCCCeEEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeee
Q psy15549 110 TERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDD-ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188 (621)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (621)
..... .+..+..+..+. .+..++|+|++++|++++. ++.|.+||+..+... .....+
T Consensus 68 ~~~~~---~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~------------------~~~~~~ 125 (343)
T 1ri6_A 68 APDDG---ALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV------------------GVVDVV 125 (343)
T ss_dssp CTTTC---CEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE------------------EEEEEE
T ss_pred cCCCC---ceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc------------------cccccc
Confidence 73211 112333333333 7889999999998876664 889999999522210 011222
Q ss_pred cCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCC-CcEEE----Eecc-CCcceEEEEEcCCCCEEEEEe-CCCcEEE
Q psy15549 189 RGHLEDVYDISWSPTSTHLISGS-VDNTAIMWDVHK-GKNLG----ILTE-HKKFVQGVAWDPKNQYVATLS-SDRSLRT 260 (621)
Q Consensus 189 ~~~~~~v~~i~~spd~~~l~s~~-~dg~i~vwd~~~-~~~~~----~~~~-~~~~v~~l~~sp~~~~l~s~~-~dg~i~i 260 (621)
. ....+.+++|+|++++|++++ .++.|.+||+.+ ++... .+.. ....+.+++|+|++++|++++ .++.|.+
T Consensus 126 ~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~ 204 (343)
T 1ri6_A 126 E-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDV 204 (343)
T ss_dssp C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 3 334588999999999888887 799999999987 64432 2222 345788999999999876655 7899999
Q ss_pred EEccC--cee--eeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeee
Q psy15549 261 YSIQS--KKV--ISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHV 336 (621)
Q Consensus 261 wd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~ 336 (621)
|++.. ++. ...+... +. .......+..++|+|+|++|+++.
T Consensus 205 ~~~~~~~g~~~~~~~~~~~--~~---------------~~~~~~~~~~i~~s~dg~~l~v~~------------------ 249 (343)
T 1ri6_A 205 WELKDPHGNIECVQTLDMM--PE---------------NFSDTRWAADIHITPDGRHLYACD------------------ 249 (343)
T ss_dssp EESSCTTSCCEEEEEEECS--CT---------------TCCSCCCEEEEEECTTSSEEEEEE------------------
T ss_pred EEecCCCCcEEEEeecccc--Cc---------------cccccCCccceEECCCCCEEEEEe------------------
Confidence 99953 332 1111100 00 001122345788888888776433
Q ss_pred eeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCC--CC--ceeEEEecccc
Q psy15549 337 FTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQ--HA--SPFAFIANIHY 412 (621)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~--~~~~~~~~~h~ 412 (621)
..++.|.+||+. ++ +.+..+.. +.
T Consensus 250 ---------------------------------------------------~~~~~i~v~d~~~~~~~~~~~~~~~~-~~ 277 (343)
T 1ri6_A 250 ---------------------------------------------------RTASLITVFSVSEDGSVLSKEGFQPT-ET 277 (343)
T ss_dssp ---------------------------------------------------TTTTEEEEEEECTTSCCEEEEEEEEC-SS
T ss_pred ---------------------------------------------------cCCCEEEEEEEcCCCCceEEeeeecC-CC
Confidence 146788888887 22 33333422 33
Q ss_pred cceEEEEEcCCCCeEEEEe-CCCcEEEEEec
Q psy15549 413 TKLTDITWSSDGKVLIASS-TDGYCSIISFG 442 (621)
Q Consensus 413 ~~v~~~~~spdg~~l~s~s-~dg~i~iw~~~ 442 (621)
.+.+++|+|+|++|++++ .++.|.+|+++
T Consensus 278 -~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 278 -QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp -SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred -ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 388999999999888887 68999999766
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=6.1e-24 Score=233.12 Aligned_cols=292 Identities=10% Similarity=0.070 Sum_probs=197.1
Q ss_pred cEEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCC---CeEEEEECCCCCEEEEEeCC---------
Q psy15549 83 AVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQK---AVNVVRFSPNGELLASGDDE--------- 150 (621)
Q Consensus 83 ~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~---~V~~i~~sp~g~~l~s~s~d--------- 150 (621)
.+.+++|+|||++++++.++.|++|+..++ .....+..|.. .|.+++|||||++|++++.+
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g-------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNVETN-------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCGGGC-------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEECCCC-------cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecce
Confidence 467889999999888766889999999887 33344445554 49999999999999998764
Q ss_pred CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q psy15549 151 STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGIL 230 (621)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~ 230 (621)
+.|.+||+.+++.. .+ ....+|...+..++|||||+.|++++. +.|++||+.+++.....
T Consensus 91 ~~i~~~d~~~~~~~-~l------------------~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQ-SL------------------DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp SEEEEEESSSCCCE-EC------------------CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred eeEEEEECCCCceE-ec------------------cCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence 78889999988641 11 122345556889999999999999885 79999999998877666
Q ss_pred ccCCcce------------------EEEEEcCCCCEEEEEeCCC----------------------------------cE
Q psy15549 231 TEHKKFV------------------QGVAWDPKNQYVATLSSDR----------------------------------SL 258 (621)
Q Consensus 231 ~~~~~~v------------------~~l~~sp~~~~l~s~~~dg----------------------------------~i 258 (621)
..+...+ .+++|+|||++|++++.|+ .|
T Consensus 151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 5544333 7899999999999887653 45
Q ss_pred EEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeee
Q psy15549 259 RTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFT 338 (621)
Q Consensus 259 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~ 338 (621)
++||+.+++....+..+.. .......+.+++|||||+++++... .
T Consensus 231 ~~~d~~~~~~~~~l~~~~~-----------------~~~~~~~~~~~~~SpDg~~l~~~~~-----~------------- 275 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDD-----------------PRMREYYITMVKWATSTKVAVTWLN-----R------------- 275 (723)
T ss_dssp EEEESSSSCCCEECCCCCC-----------------GGGSSEEEEEEEESSSSEEEEEEEE-----T-------------
T ss_pred EEEECCCCceeEEeeCCcc-----------------CCCccceeEEEEEeCCCeEEEEEEc-----C-------------
Confidence 6666655543222211100 0011334667778888776654431 0
Q ss_pred ecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceE--
Q psy15549 339 RACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLT-- 416 (621)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~-- 416 (621)
...+..|++||+.+++....+...+...+.
T Consensus 276 ------------------------------------------------~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 307 (723)
T 1xfd_A 276 ------------------------------------------------AQNVSILTLCDATTGVCTKKHEDESEAWLHRQ 307 (723)
T ss_dssp ------------------------------------------------TSCEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred ------------------------------------------------CCCeEEEEEEeCCCCcceEEEEeccCCEEecc
Confidence 002357899999998876655433444443
Q ss_pred --EEEEcCCCCeEEE--EeCCC------cEEEEE-ecCCc--CCcccCCCCCcccc-cCCCCCCCCcccCCC-c--ccHH
Q psy15549 417 --DITWSSDGKVLIA--SSTDG------YCSIIS-FGDNE--IGIPYVPPSGEESK-ENDPTKGEPVRSEDK-P--RSAE 479 (621)
Q Consensus 417 --~~~~spdg~~l~s--~s~dg------~i~iw~-~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~-~--~~~~ 479 (621)
.++|+|||+.|+. +..++ .|.+|+ ..++. ....+......+.. +.++++|+.++..+. + +.+.
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 387 (723)
T 1xfd_A 308 NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQ 387 (723)
T ss_dssp CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCE
T ss_pred CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceE
Confidence 8899999998875 44677 455566 33444 14555443333333 579999998765433 3 6778
Q ss_pred Hhccc
Q psy15549 480 QAKGE 484 (621)
Q Consensus 480 ~w~~~ 484 (621)
+|.+.
T Consensus 388 l~~~~ 392 (723)
T 1xfd_A 388 LYSAN 392 (723)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88753
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=9.3e-23 Score=201.55 Aligned_cols=274 Identities=12% Similarity=0.097 Sum_probs=194.4
Q ss_pred EEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccc-cccC-cEEEEEEccCCCEEEEE-c-CCceEEE
Q psy15549 32 RIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLS-RHQK-AVNVVRFSPNGELLASG-D-DVGKEIW 107 (621)
Q Consensus 32 ~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~-~h~~-~V~~l~~spdg~~las~-~-d~~v~iw 107 (621)
+|++++.++.|. +||+.+++.... +. ++.. .+.+++|+|+|++++++ . ++.|.+|
T Consensus 3 ~~v~~~~~~~v~--------------~~d~~~~~~~~~-------~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 61 (337)
T 1pby_B 3 YILAPARPDKLV--------------VIDTEKMAVDKV-------ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61 (337)
T ss_dssp EEEEEETTTEEE--------------EEETTTTEEEEE-------EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCeEE--------------EEECCCCcEEEE-------EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEE
Confidence 899999999999 888776543221 22 2222 47889999999876554 4 6789999
Q ss_pred EeccCccccccceecccccc-----cCCCeEEEEECCCCCEEEEEe------------CCCcEEEEEccCCCCCCCCCCC
Q psy15549 108 YLTERESGIANVEFASDLSR-----HQKAVNVVRFSPNGELLASGD------------DESTIIVWKQKTDQDLPEFPSS 170 (621)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~-----h~~~V~~i~~sp~g~~l~s~s------------~dg~i~vwd~~~~~~~~~~~~~ 170 (621)
++..+. ....+.. |...+..++|+|+|++|++++ .++.|.+||+.+++..
T Consensus 62 d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------ 128 (337)
T 1pby_B 62 DLVTGE-------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR------ 128 (337)
T ss_dssp ETTTCC-------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE------
T ss_pred ECCCCC-------eEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE------
Confidence 987762 2222221 223577899999999998886 5799999999876542
Q ss_pred CcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEE
Q psy15549 171 NLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVA 250 (621)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 250 (621)
..+.. ...+.+++|+|++++|+++ ++.|.+||+.+++.+..+..+.. ...+.|+|++.+|+
T Consensus 129 ---------------~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~ 189 (337)
T 1pby_B 129 ---------------KAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVW 189 (337)
T ss_dssp ---------------EEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCC
T ss_pred ---------------EEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEe
Confidence 22222 3457789999999988888 68899999999988877754431 11237899998776
Q ss_pred EEeCCC------------------------cEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeee
Q psy15549 251 TLSSDR------------------------SLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLT 306 (621)
Q Consensus 251 s~~~dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 306 (621)
..+..+ .|.+||+.+++.. .+.. ..+...+.+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~---------------------~~~~~~~~~~~ 247 (337)
T 1pby_B 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV---------------------RIMDVFYFSTA 247 (337)
T ss_dssp CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE---------------------EECSSCEEEEE
T ss_pred eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec---------------------CCCCCceeeEE
Confidence 554432 3577887776653 2110 01122345677
Q ss_pred ecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEE
Q psy15549 307 FSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIA 386 (621)
Q Consensus 307 ~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 386 (621)
|+|||+++++
T Consensus 248 ~s~dg~~l~~---------------------------------------------------------------------- 257 (337)
T 1pby_B 248 VNPAKTRAFG---------------------------------------------------------------------- 257 (337)
T ss_dssp ECTTSSEEEE----------------------------------------------------------------------
T ss_pred ECCCCCEEEE----------------------------------------------------------------------
Confidence 7777776654
Q ss_pred EEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCC
Q psy15549 387 VATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPS 454 (621)
Q Consensus 387 ~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 454 (621)
+ ++.|++||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+.+++....+..+.
T Consensus 258 ~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 258 A--YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp E--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred e--CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 2 47899999999988777743 3468899999999999999999999999999998777765543
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=3.3e-22 Score=197.17 Aligned_cols=286 Identities=13% Similarity=0.121 Sum_probs=196.8
Q ss_pred EEEccCCCE-EEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeC-CCcEEEEEccCCCC
Q psy15549 87 VRFSPNGEL-LASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDD-ESTIIVWKQKTDQD 163 (621)
Q Consensus 87 l~~spdg~~-las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~-dg~i~vwd~~~~~~ 163 (621)
..|.+++.+ ++++. ++.|.+|+...+ +....+..+...+ .++|+|+|++|++++. ++.|.+||+.+++.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~-------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTL-------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP 74 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTC-------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccc-------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence 346666665 44454 888999999876 3344444455566 9999999997766655 88999999988764
Q ss_pred CCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCC---eEEEEECCCCcEEEEeccCCcceEEE
Q psy15549 164 LPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDN---TAIMWDVHKGKNLGILTEHKKFVQGV 240 (621)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~l 240 (621)
. ...+..+.....+++|+|++++|+++..++ .|.+||+.+++.+..+..+ ....++
T Consensus 75 ~--------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~ 133 (331)
T 3u4y_A 75 K--------------------VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGI 133 (331)
T ss_dssp E--------------------EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEE
T ss_pred e--------------------EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccce
Confidence 1 133445555555599999999999655553 8999999999988877544 456899
Q ss_pred EEcCCCCEEEEE-eCCCc-EEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecc
Q psy15549 241 AWDPKNQYVATL-SSDRS-LRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPS 318 (621)
Q Consensus 241 ~~sp~~~~l~s~-~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s 318 (621)
+|+|+|++|+++ ..++. |.+|++.....+...... . .........++|+|+|++++++.
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~----------------~---~~~~~~~~~~~~spdg~~l~v~~ 194 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE----------------F---ISGGTRPFNITFTPDGNFAFVAN 194 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE----------------E---ECSSSSEEEEEECTTSSEEEEEE
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc----------------c---ccCCCCccceEECCCCCEEEEEe
Confidence 999999866655 45588 999998764332211000 0 01122347788888888766543
Q ss_pred ccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeC
Q psy15549 319 GCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDT 398 (621)
Q Consensus 319 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 398 (621)
..++.|++||+
T Consensus 195 ---------------------------------------------------------------------~~~~~v~v~d~ 205 (331)
T 3u4y_A 195 ---------------------------------------------------------------------LIGNSIGILET 205 (331)
T ss_dssp ---------------------------------------------------------------------TTTTEEEEEEC
T ss_pred ---------------------------------------------------------------------CCCCeEEEEEC
Confidence 14678999999
Q ss_pred CCCce---eEEEecccccceEEEEEcCCCCeEEEEe-CCCcEEEEEecCCcC--CcccC----CCCCc---ccccCCCCC
Q psy15549 399 QHASP---FAFIANIHYTKLTDITWSSDGKVLIASS-TDGYCSIISFGDNEI--GIPYV----PPSGE---ESKENDPTK 465 (621)
Q Consensus 399 ~~~~~---~~~~~~~h~~~v~~~~~spdg~~l~s~s-~dg~i~iw~~~~~~~--~~~~~----~~~~~---~~~~~~~~~ 465 (621)
.+++. +..+. ....+..++|+|||++|++++ .++.|.+||+.++++ ...+. ..... ...+.++++
T Consensus 206 ~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 283 (331)
T 3u4y_A 206 QNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKT 283 (331)
T ss_dssp SSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTT
T ss_pred CCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCC
Confidence 98887 66664 346788999999999776654 578899999998876 22221 11111 233588999
Q ss_pred CCCcc-cCCCcccHHHhcccCcccccc
Q psy15549 466 GEPVR-SEDKPRSAEQAKGEGKVLGEK 491 (621)
Q Consensus 466 ~~~~~-s~~~~~~~~~w~~~~~~~~~~ 491 (621)
++.+. +...++.+.+|++.++..+..
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKVVGYV 310 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred CCEEEEecCCCCcEEEEEecCCcccce
Confidence 99764 456677999999887754443
No 144
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=3.2e-21 Score=191.46 Aligned_cols=259 Identities=11% Similarity=0.126 Sum_probs=173.1
Q ss_pred cccCcEEEEEEccCCCEEEEEc---CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe-CCCcEE
Q psy15549 79 RHQKAVNVVRFSPNGELLASGD---DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-DESTII 154 (621)
Q Consensus 79 ~h~~~V~~l~~spdg~~las~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s-~dg~i~ 154 (621)
.+...+..++|+|||++++++. ++.|.+|++..+. ...+..+..+...+..++|+|+|++|++++ .++.|.
T Consensus 37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~-----~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQT-----AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAE 111 (347)
T ss_dssp EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTE-----EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCc-----EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence 4556788899999999444443 4689999996552 134444455777889999999999888887 779999
Q ss_pred EEEccCCCCCCCCCCCCcccccccccceeeeeeec---------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CC
Q psy15549 155 VWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILR---------GHLEDVYDISWSPTSTHLISGSVDNTAIMWDVH-KG 224 (621)
Q Consensus 155 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~-~~ 224 (621)
+|++........+ ..+. .+...+.+++|+|+|+++++...++.|.+|++. ++
T Consensus 112 v~~~~~~g~~~~~------------------~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 112 VMKIAADGALTLT------------------DTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp EEEECTTSCEEEE------------------EEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred EEEeCCCCCeeec------------------ceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 9999643221110 1111 123458899999999966666668899999998 45
Q ss_pred cEEE--Eecc-CCcceEEEEEcCCCCEEEEE-eCCCcEEEEEccC--ceeee--ecccCCCCCCCccccccccccccccC
Q psy15549 225 KNLG--ILTE-HKKFVQGVAWDPKNQYVATL-SSDRSLRTYSIQS--KKVIS--RACRSKLPVDSSHELFDKVVPLFHDD 296 (621)
Q Consensus 225 ~~~~--~~~~-~~~~v~~l~~sp~~~~l~s~-~~dg~i~iwd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (621)
+... .+.. ....+..++|+|+|++|+++ ..++.|.+|++.. ++... .+..... ..
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-----------------~~ 236 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA-----------------DY 236 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT-----------------TC
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC-----------------CC
Confidence 4322 2222 23357789999999977664 5678999999874 44321 1110000 00
Q ss_pred CcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCC
Q psy15549 297 TMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPL 376 (621)
Q Consensus 297 ~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (621)
.....+..++|+|||++|+++.
T Consensus 237 ~~~~~~~~i~~spdG~~l~v~~---------------------------------------------------------- 258 (347)
T 3hfq_A 237 TAHNGAAAIRLSHDGHFLYVSN---------------------------------------------------------- 258 (347)
T ss_dssp CSCCEEEEEEECTTSCEEEEEE----------------------------------------------------------
T ss_pred CCCCcceeEEECCCCCEEEEEe----------------------------------------------------------
Confidence 1113467889999998876543
Q ss_pred ccCCCcEEEEEEcCCcEEEEeCCCC---ceeEEEecccccceEEEEEcCCCCeEEEEeC-CCcEEEEEec--CCcCC
Q psy15549 377 FKLPYRIVIAVATENNILLYDTQHA---SPFAFIANIHYTKLTDITWSSDGKVLIASST-DGYCSIISFG--DNEIG 447 (621)
Q Consensus 377 ~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~-dg~i~iw~~~--~~~~~ 447 (621)
..++.|.+|++... +.+..+. .+...+..++|+|||++|++++. ++.|.+|+++ ++++.
T Consensus 259 -----------~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 259 -----------RGYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp -----------ETTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred -----------CCCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 23567888887632 2333332 34567889999999999888875 4899999664 45543
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=7.3e-22 Score=196.57 Aligned_cols=271 Identities=13% Similarity=0.091 Sum_probs=204.3
Q ss_pred cCcEEEEEEccCCCEEEEEc--------CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEE-EeCCC
Q psy15549 81 QKAVNVVRFSPNGELLASGD--------DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLAS-GDDES 151 (621)
Q Consensus 81 ~~~V~~l~~spdg~~las~~--------d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s-~s~dg 151 (621)
...+..++|+|+|++|++++ ++.|.+||...+ +....+.. ...+..++|+|+|++++. ...++
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~-------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL-------EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNS 111 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC-------CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC-------eEEEEEec-CCCcceEEECCCCCEEEEEecCCC
Confidence 45688999999999888877 446899988765 33333332 344778999999996554 55679
Q ss_pred cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCC---------CCeEEEEECCCCCEEEEEe--CCCeEEEEE
Q psy15549 152 TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHL---------EDVYDISWSPTSTHLISGS--VDNTAIMWD 220 (621)
Q Consensus 152 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~i~~spd~~~l~s~~--~dg~i~vwd 220 (621)
.|.+||..+++.+. .+..+. ..+.+++|+|+++++++++ .++.|.+||
T Consensus 112 ~v~~~d~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 112 AVTAIDAKTGEVKG---------------------RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp EEEEEETTTCCEEE---------------------EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred EEEEEeCCCCeeEE---------------------EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 99999999887542 222221 1278999999999888776 478999999
Q ss_pred CCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCccc
Q psy15549 221 VHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKS 300 (621)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (621)
+.+++.+..+..+...+.+++|+|++++|++++.++.|.+||+.+++.+..+.... .....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------------~~~~~ 231 (353)
T 3vgz_A 171 GGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD-------------------DGKEH 231 (353)
T ss_dssp TTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC-------------------SSSCC
T ss_pred CCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC-------------------CCCCc
Confidence 99999988887566668899999999999999999999999999998876654211 11223
Q ss_pred ceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCC
Q psy15549 301 FFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLP 380 (621)
Q Consensus 301 ~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (621)
.+.+++|+|+|++++++.
T Consensus 232 ~~~~~~~s~dg~~l~~~~-------------------------------------------------------------- 249 (353)
T 3vgz_A 232 FFINISLDTARQRAFITD-------------------------------------------------------------- 249 (353)
T ss_dssp CEEEEEEETTTTEEEEEE--------------------------------------------------------------
T ss_pred ccceEEECCCCCEEEEEe--------------------------------------------------------------
Confidence 457789999998776644
Q ss_pred CcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEe-CCCcEEEEEecCCcCCcccCCCCCcccc
Q psy15549 381 YRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASS-TDGYCSIISFGDNEIGIPYVPPSGEESK 459 (621)
Q Consensus 381 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 459 (621)
..++.|.+||..+++.+..+..++ ...++|+|+|++|++++ .++.|.+||..+++....+.... ....
T Consensus 250 -------~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~ 318 (353)
T 3vgz_A 250 -------SKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNS 318 (353)
T ss_dssp -------SSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEE
T ss_pred -------CCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCe
Confidence 135789999999998888775432 25799999999766555 68999999999998877766543 4566
Q ss_pred cCCCCCCCCcccC
Q psy15549 460 ENDPTKGEPVRSE 472 (621)
Q Consensus 460 ~~~~~~~~~~~s~ 472 (621)
+.++++|+.+..+
T Consensus 319 ~~~s~dg~~l~v~ 331 (353)
T 3vgz_A 319 LALSADGKTLYVS 331 (353)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEEcCCCCEEEEE
Confidence 7788888855443
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=8e-22 Score=190.73 Aligned_cols=237 Identities=14% Similarity=0.145 Sum_probs=177.4
Q ss_pred eeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEecc-ccccccceeeccccccc-cCcE
Q psy15549 7 EISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTE-RESGIANVEFASDLSRH-QKAV 84 (621)
Q Consensus 7 ~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~-~~~~~~~~~~~~~~~~h-~~~V 84 (621)
.....|...|.+++|+|+++ +|++++ ++.|. +||+.+ +..... ...| ...|
T Consensus 35 ~~~~~~~~~v~~~~~spdg~-----~l~~~~-~~~i~--------------~~d~~~~~~~~~~-------~~~~~~~~~ 87 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGK-----YLLLNS-EGLLY--------------RLSLAGDPSPEKV-------DTGFATICN 87 (297)
T ss_dssp EEEEEESSCCEEEEECTTSS-----EEEEEE-TTEEE--------------EEESSSCCSCEEC-------CCTTCCCBC
T ss_pred eeeccCCcceEeeEECCCCC-----EEEEEc-CCeEE--------------EEeCCCCCCceEe-------ccccccccc
Confidence 34556788999999999998 899886 77888 888877 543222 3344 4778
Q ss_pred EEEEEccCCCEEEEEc---CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEE-EEeCCCcEEEEEccC
Q psy15549 85 NVVRFSPNGELLASGD---DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLA-SGDDESTIIVWKQKT 160 (621)
Q Consensus 85 ~~l~~spdg~~las~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~-s~s~dg~i~vwd~~~ 160 (621)
.+++|+|+|++|++++ ++...||.+..... ....+..+ ..+..++|+|++++|+ +++.++.++||+++.
T Consensus 88 ~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~ 160 (297)
T 2ojh_A 88 NDHGISPDGALYAISDKVEFGKSAIYLLPSTGG------TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI 160 (297)
T ss_dssp SCCEECTTSSEEEEEECTTTSSCEEEEEETTCC------CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred cceEECCCCCEEEEEEeCCCCcceEEEEECCCC------ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence 9999999999999887 24677777764322 12233333 3488999999999887 778899999999754
Q ss_pred CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECC-CCcEEEEeccCCcceE
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS-VDNTAIMWDVH-KGKNLGILTEHKKFVQ 238 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~-~dg~i~vwd~~-~~~~~~~~~~~~~~v~ 238 (621)
.... ...+..+...+.+++|+|++++|++++ .++.+.+|++. .+..+..+..|...+.
T Consensus 161 ~~~~--------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 220 (297)
T 2ojh_A 161 DSGV--------------------ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDW 220 (297)
T ss_dssp TTCC--------------------EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEE
T ss_pred CCCc--------------------ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccC
Confidence 3211 144566778899999999999888766 58899999886 5666778888888899
Q ss_pred EEEEcCCCCEEEEEeCC-----------CcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeee
Q psy15549 239 GVAWDPKNQYVATLSSD-----------RSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTF 307 (621)
Q Consensus 239 ~l~~sp~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 307 (621)
+++|+|+|++|++++.+ +.|.+||+.+++...... ...+...+.+++|
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~---------------------~~~~~~~~~~~~~ 279 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD---------------------LFGGQGTMNSPNW 279 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE---------------------EEESTTTSCSCCB
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec---------------------cCCCCcccccceE
Confidence 99999999999988776 569999998875432221 0122335678999
Q ss_pred cCCCCeEEecc
Q psy15549 308 SPDGQLLIAPS 318 (621)
Q Consensus 308 spdg~~l~~~s 318 (621)
+|+|++|++++
T Consensus 280 spdg~~l~~~~ 290 (297)
T 2ojh_A 280 SPDGDEFAYVR 290 (297)
T ss_dssp CTTSSEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 99999999887
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=8.2e-22 Score=215.50 Aligned_cols=319 Identities=15% Similarity=0.107 Sum_probs=207.8
Q ss_pred CCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCC
Q psy15549 14 DPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNG 93 (621)
Q Consensus 14 ~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 93 (621)
..|.+++|||| . +++.+. ++.|. +||+.+++.. .+..+...+.+++|||||
T Consensus 82 ~~v~~~~~spd-~-----~~~~~~-~~~i~--------------~~d~~~~~~~--------~l~~~~~~~~~~~~SpdG 132 (706)
T 2z3z_A 82 FPSFRTLDAGR-G-----LVVLFT-QGGLV--------------GFDMLARKVT--------YLFDTNEETASLDFSPVG 132 (706)
T ss_dssp CCCEEEEETTT-T-----EEEEEE-TTEEE--------------EEETTTTEEE--------EEECCTTCCTTCEECTTS
T ss_pred cCceeEEECCC-C-----eEEEEE-CCEEE--------------EEECCCCceE--------EccCCcccccCCcCCCCC
Confidence 57999999999 5 555553 48888 8888765432 234566778999999999
Q ss_pred CEEEEEcCCceEEEEecc-----CccccccceecccccccCC--------------CeEEEEECCCCCEEEEEe------
Q psy15549 94 ELLASGDDVGKEIWYLTE-----RESGIANVEFASDLSRHQK--------------AVNVVRFSPNGELLASGD------ 148 (621)
Q Consensus 94 ~~las~~d~~v~iw~~~~-----~~~~~~~~~~~~~~~~h~~--------------~V~~i~~sp~g~~l~s~s------ 148 (621)
++|+++.++.|.+|++.. +. .......+.. .+.+++|+|||++|++++
T Consensus 133 ~~la~~~~~~i~v~~~~~~~~~~g~-------~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~ 205 (706)
T 2z3z_A 133 DRVAYVRNHNLYIARGGKLGEGMSR-------AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMV 205 (706)
T ss_dssp SEEEEEETTEEEEEECBCTTSCCCC-------CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTS
T ss_pred CEEEEEECCeEEEEecCcccccCCC-------cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCC
Confidence 999998899999999987 42 1221222222 258899999999999987
Q ss_pred ---------------------------CCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEEC
Q psy15549 149 ---------------------------DESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWS 201 (621)
Q Consensus 149 ---------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 201 (621)
.+..|++||+.+++.... .....|...+.+++|+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~~s 266 (706)
T 2z3z_A 206 KPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL-------------------QTGEPKEKFLTNLSWS 266 (706)
T ss_dssp CCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC-------------------CCCSCTTCEEEEEEEC
T ss_pred ceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee-------------------ccCCCCceeEeeEEEE
Confidence 446799999987753210 1112466789999999
Q ss_pred CCCCEEEEEeCCC-----eEEEEECCCCcEEEEec--cCCc---ceEEEEEcC--CCCEEEEEeCCCcEEEEEcc-Ccee
Q psy15549 202 PTSTHLISGSVDN-----TAIMWDVHKGKNLGILT--EHKK---FVQGVAWDP--KNQYVATLSSDRSLRTYSIQ-SKKV 268 (621)
Q Consensus 202 pd~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~--~~~~---~v~~l~~sp--~~~~l~s~~~dg~i~iwd~~-~~~~ 268 (621)
|||++|++++.++ .|++||+.+++....+. .+.. .+.+++|+| +|++|++++.|+.+++|.+. ++..
T Consensus 267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~ 346 (706)
T 2z3z_A 267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL 346 (706)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE
T ss_pred CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE
Confidence 9999999987765 89999999984433332 1222 246789999 99999999999999999886 5555
Q ss_pred eeecccCCCCCCCccccccccccccccCCcccceee-eeecCCCCeEEeccccccCCCC--CCcceeeeeeeeecccCCC
Q psy15549 269 ISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRR-LTFSPDGQLLIAPSGCLENSDS--TRKPISVTHVFTRACLNKP 345 (621)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~spdg~~l~~~s~~~~~~d~--~i~~~~~~~~~~~~~~~~~ 345 (621)
+..+..+ ...+.. ++|+|||+.|++++. .++ ...+|..... ...
T Consensus 347 ~~~l~~~-----------------------~~~v~~~~~~spdg~~l~~~~~----~~~~~~~~l~~~d~~------~~~ 393 (706)
T 2z3z_A 347 IRQVTKG-----------------------EWEVTNFAGFDPKGTRLYFEST----EASPLERHFYCIDIK------GGK 393 (706)
T ss_dssp EEECCCS-----------------------SSCEEEEEEECTTSSEEEEEES----SSCTTCBEEEEEETT------CCC
T ss_pred EEecCCC-----------------------CeEEEeeeEEcCCCCEEEEEec----CCCCceEEEEEEEcC------CCC
Confidence 5544321 223445 799999998887663 232 3455544310 011
Q ss_pred ceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcC----CcEEEEeCCCCceeEEEecccccceEEEEEc
Q psy15549 346 AVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATE----NNILLYDTQHASPFAFIANIHYTKLTDITWS 421 (621)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~s 421 (621)
...+. +...+..+.|+| ++++++..+.+ +.|++||+.+++ ...+ . +...+....|.
T Consensus 394 ~~~l~-~~~~~~~~~~sp----------------dg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~-~-~~~~~~~~~~~ 453 (706)
T 2z3z_A 394 TKDLT-PESGMHRTQLSP----------------DGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLL-E-AKNPDTGYAMP 453 (706)
T ss_dssp CEESC-CSSSEEEEEECT----------------TSSEEEEEEECSSCSCEEEEEESSSCE-EEEE-E-CC------CCC
T ss_pred ceecc-CCCceEEEEECC----------------CCCEEEEEecCCCCCcEEEEEECCCCe-Eeec-c-ccchhhhcCCC
Confidence 12222 333455666665 77777776554 469999999887 3333 2 33345444444
Q ss_pred CCCCeEEEEeCCC--cEEEEEe
Q psy15549 422 SDGKVLIASSTDG--YCSIISF 441 (621)
Q Consensus 422 pdg~~l~s~s~dg--~i~iw~~ 441 (621)
+.. .+..-+.|| .+..|-+
T Consensus 454 ~~~-~~~~~~~~g~~~~~~~~~ 474 (706)
T 2z3z_A 454 EIR-TGTIMAADGQTPLYYKLT 474 (706)
T ss_dssp CEE-EEEEECTTSSSEEEEEEE
T ss_pred CcE-EEEEEcCCCCEEEEEEEE
Confidence 332 233334455 5555554
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=3.2e-22 Score=219.12 Aligned_cols=339 Identities=13% Similarity=0.148 Sum_probs=210.7
Q ss_pred EEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccC---cEEEEEEccCC
Q psy15549 17 LSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQK---AVNVVRFSPNG 93 (621)
Q Consensus 17 ~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg 93 (621)
.+++|+||++ +++++ .|+.|+ +||+.++..... +.+|.. .|.+++|||||
T Consensus 19 ~~~~~s~dg~-----~~~~~-~d~~i~--------------~~~~~~g~~~~~-------~~~~~~~~~~~~~~~~SpDg 71 (719)
T 1z68_A 19 FFPNWISGQE-----YLHQS-ADNNIV--------------LYNIETGQSYTI-------LSNRTMKSVNASNYGLSPDR 71 (719)
T ss_dssp CCCEESSSSE-----EEEEC-TTSCEE--------------EEESSSCCEEEE-------ECHHHHHTTTCSEEEECTTS
T ss_pred CccEECCCCe-----EEEEc-CCCCEE--------------EEEcCCCcEEEE-------EccccccccceeeEEECCCC
Confidence 3789999996 66665 589999 999887764322 333433 48999999999
Q ss_pred CEEEEEcC----------CceEEEEeccCccccccceec--ccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCC
Q psy15549 94 ELLASGDD----------VGKEIWYLTERESGIANVEFA--SDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTD 161 (621)
Q Consensus 94 ~~las~~d----------~~v~iw~~~~~~~~~~~~~~~--~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~ 161 (621)
++|+++++ +.+.+|++..+. .. ..+ ...+..++|||||+.||++. ++.|++|++.++
T Consensus 72 ~~la~~~~~~~~~~~s~~~~i~~~d~~~g~-------~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g 140 (719)
T 1z68_A 72 QFVYLESDYSKLWRYSYTATYYIYDLSNGE-------FVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD 140 (719)
T ss_dssp SEEEEEEEEEECSSSCEEEEEEEEETTTTE-------ECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred CeEEEEecCceeEEeecceEEEEEECCCCc-------cccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCC
Confidence 99998764 679999998762 21 222 24688899999999999986 789999999887
Q ss_pred CCCCCCCCCCcccccccccceeeeeeecCCCC---------CeEEEEECCCCCEEEEEeCCC------------------
Q psy15549 162 QDLPEFPSSNLDEENVNKEHWIVTKILRGHLE---------DVYDISWSPTSTHLISGSVDN------------------ 214 (621)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~i~~spd~~~l~s~~~dg------------------ 214 (621)
........... ...+.++.. ...+++|+|||++|++++.|.
T Consensus 141 ~~~~l~~~~~~------------~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~ 208 (719)
T 1z68_A 141 PPFQITFNGRE------------NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPR 208 (719)
T ss_dssp CCEECCCCCBT------------TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCE
T ss_pred CcEEEecCCCc------------CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcc
Confidence 65321100000 001112221 225899999999999987652
Q ss_pred ----------------eEEEEECCCCcEE---E-----EeccCCcceEEEEEcCCCCEEEEEeCC----CcEEEEE----
Q psy15549 215 ----------------TAIMWDVHKGKNL---G-----ILTEHKKFVQGVAWDPKNQYVATLSSD----RSLRTYS---- 262 (621)
Q Consensus 215 ----------------~i~vwd~~~~~~~---~-----~~~~~~~~v~~l~~sp~~~~l~s~~~d----g~i~iwd---- 262 (621)
.|++||+.+++.. . .+..|...+..++|+||++++++.... ..|.+||
T Consensus 209 ~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~ 288 (719)
T 1z68_A 209 TINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFRED 288 (719)
T ss_dssp EEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSS
T ss_pred ceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCC
Confidence 7889999887642 1 133578889999999998777764433 2488899
Q ss_pred ccCceeeeecccCCCCCCCccccccccccccccCCccccee-----eeeecCCCCeEEeccccccCCCCCCcceeeeeee
Q psy15549 263 IQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFR-----RLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVF 337 (621)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~ 337 (621)
+.+++....+.. ....+...+. .++|+|||+.++..... .++...+|-...
T Consensus 289 ~~~g~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~---~~g~~~l~~~~~-- 344 (719)
T 1z68_A 289 WQTWDCPKTQEH-------------------IEESRTGWAGGFFVSTPVFSYDAISYYKIFSD---KDGYKHIHYIKD-- 344 (719)
T ss_dssp SSSEECCGGGEE-------------------EEECSSSCSSSSSCCCCEECTTSSCEEEEEEC---TTSCEEEEEESS--
T ss_pred CCCCceEEEEec-------------------ccccCCceEccccCCccEECCCCCeEEEEEEc---cCCceEEEEEEC--
Confidence 777765433310 0001122233 68999999977653211 334333332210
Q ss_pred eecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcC-----CcEEEEeCCC--Cce-eEEEec
Q psy15549 338 TRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATE-----NNILLYDTQH--ASP-FAFIAN 409 (621)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~--~~~-~~~~~~ 409 (621)
. ......+..+...+..+ .++ +++.++..+.+ +.+++|.+.. +.. ...+..
T Consensus 345 --~--~~~~~~lt~~~~~v~~~----------------~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~ 403 (719)
T 1z68_A 345 --T--VENAIQITSGKWEAINI----------------FRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC 403 (719)
T ss_dssp --C--STTCEECSCSSSCEEEE----------------EEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST
T ss_pred --C--CCceEecccCceEEEEE----------------EEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC
Confidence 0 11112222222222221 122 45667666654 7788887654 321 223311
Q ss_pred ---ccccceEEEEEcCCCCeEEEE-eCC--CcEEEEEecCCcCCccc
Q psy15549 410 ---IHYTKLTDITWSSDGKVLIAS-STD--GYCSIISFGDNEIGIPY 450 (621)
Q Consensus 410 ---~h~~~v~~~~~spdg~~l~s~-s~d--g~i~iw~~~~~~~~~~~ 450 (621)
+|...+..+.|+|||++|+.. +.+ ..+.+|++.+++....+
T Consensus 404 ~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~ 450 (719)
T 1z68_A 404 HLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKIL 450 (719)
T ss_dssp TTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred ccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence 255678899999999988754 333 46889998877654333
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=3.5e-20 Score=185.09 Aligned_cols=267 Identities=9% Similarity=0.128 Sum_probs=174.1
Q ss_pred ccCcEEEEEEccCCCEEEEEcC-----CceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe-CCCcE
Q psy15549 80 HQKAVNVVRFSPNGELLASGDD-----VGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-DESTI 153 (621)
Q Consensus 80 h~~~V~~l~~spdg~~las~~d-----~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s-~dg~i 153 (621)
+...+..++|+|||++|++++. +.+.+|++..... .+..+.....+......+++ ++++|++++ .++.|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g---~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG---TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSI 122 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT---EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC---cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEE
Confidence 6677888999999999998874 5899999986421 12333334445566778888 788777766 67899
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCc-------
Q psy15549 154 IVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSV-DNTAIMWDVHKGK------- 225 (621)
Q Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~-dg~i~vwd~~~~~------- 225 (621)
.+|++.....+..+...... .... ......+...+.+++|+|+|++|++++. ++.|.+|++....
T Consensus 123 ~~~~~~~~g~~~~~~~~~~~---~g~~----~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~ 195 (361)
T 3scy_A 123 TVFPIGQDGALLPASDVIEF---KGSG----PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEK 195 (361)
T ss_dssp EEEEBCTTSCBCSCSEEEEC---CCCC----SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCC
T ss_pred EEEEeCCCCcCcccceeEEc---cCCC----CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccc
Confidence 99999865544322100000 0000 0001123445789999999997766654 7899999987543
Q ss_pred E------EEEeccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCc
Q psy15549 226 N------LGILTEHKKFVQGVAWDPKNQYVATLS-SDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTM 298 (621)
Q Consensus 226 ~------~~~~~~~~~~v~~l~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (621)
. ......+...+..++|+|+|++|++++ .++.|.+|++.+++......... ....
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~------------------~~~~ 257 (361)
T 3scy_A 196 FLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA------------------DTVN 257 (361)
T ss_dssp CEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES------------------CSSC
T ss_pred eeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec------------------CCCC
Confidence 1 111223455678999999999888777 58999999998765422111000 0011
Q ss_pred ccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCcc
Q psy15549 299 KSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFK 378 (621)
Q Consensus 299 ~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (621)
......++|+|||++|+++..
T Consensus 258 ~~~~~~i~~spdg~~l~v~~~----------------------------------------------------------- 278 (361)
T 3scy_A 258 AQGSGDIHLSPDGKYLYASNR----------------------------------------------------------- 278 (361)
T ss_dssp CCCEEEEEECTTSSEEEEEEC-----------------------------------------------------------
T ss_pred CCCcccEEECCCCCEEEEECC-----------------------------------------------------------
Confidence 123468899999998876541
Q ss_pred CCCcEEEEEEc-CCcEEEEeCC--CCc--eeEEEecccccceEEEEEcCCCCeEEEEe-CCCcEEEEEec--CCcCC
Q psy15549 379 LPYRIVIAVAT-ENNILLYDTQ--HAS--PFAFIANIHYTKLTDITWSSDGKVLIASS-TDGYCSIISFG--DNEIG 447 (621)
Q Consensus 379 ~~~~~l~~~~~-dg~i~iwd~~--~~~--~~~~~~~~h~~~v~~~~~spdg~~l~s~s-~dg~i~iw~~~--~~~~~ 447 (621)
. ++.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .++.|.+|+++ ++++.
T Consensus 279 ----------~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 279 ----------LKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp ----------SSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred ----------CCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 2 4678888875 344 2333322 45688999999999998887 67999998766 55543
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=7.3e-22 Score=210.61 Aligned_cols=196 Identities=11% Similarity=0.101 Sum_probs=143.6
Q ss_pred CCCCeEEEeccccccCCcceEEEEecC-CceEEeeeccCccccccceeEEeccccccccceeecccccccc-CcEEEEEE
Q psy15549 12 NRDPVLSVDIQLKQEKDNCYRIVTGGA-DSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQ-KAVNVVRF 89 (621)
Q Consensus 12 h~~~v~~l~~spd~~~~~~~~l~tg~~-dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~ 89 (621)
+..+|++++|+|||+ +||+++. ||.++ ||++..+... .+..|. ..|.+++|
T Consensus 20 ~~~~~~~~~~~~DG~-----~la~~s~~~g~~~--------------lw~~~~g~~~--------~lt~~~~~~~~~~~~ 72 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGD-----KLLVVGFSEGSVN--------------AYLYDGGETV--------KLNREPINSVLDPHY 72 (582)
T ss_dssp HHSCEEEEEEEETTT-----EEEEEEEETTEEE--------------EEEEETTEEE--------ECCSSCCSEECEECT
T ss_pred hccchheeecCCCCC-----eEEEEEccCCcee--------------EEEEcCCCcE--------eeecccccccccccC
Confidence 456899999999999 9998877 99999 8988554322 244454 68999999
Q ss_pred ccCCCEEEEEcC----CceEEEEecc--CccccccceecccccccCCCeEEEEECCCCC--EEEEEeCCCcEEEEEccCC
Q psy15549 90 SPNGELLASGDD----VGKEIWYLTE--RESGIANVEFASDLSRHQKAVNVVRFSPNGE--LLASGDDESTIIVWKQKTD 161 (621)
Q Consensus 90 spdg~~las~~d----~~v~iw~~~~--~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~--~l~s~s~dg~i~vwd~~~~ 161 (621)
||| +++++++. ....+|.+.. .+.. . .+..+ ..+...+|+|+|+ ++++++. +.+.+||+.++
T Consensus 73 spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~----~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g 142 (582)
T 3o4h_A 73 GVG-RVILVRDVSKGAEQHALFKVNTSRPGEE----Q---RLEAV-KPMRILSGVDTGEAVVFTGATE-DRVALYALDGG 142 (582)
T ss_dssp TCS-EEEEEEECSTTSCCEEEEEEETTSTTCC----E---ECTTS-CSBEEEEEEECSSCEEEEEECS-SCEEEEEEETT
T ss_pred CCC-eEEEEeccCCCCcceEEEEEeccCCCcc----c---cccCC-CCceeeeeCCCCCeEEEEecCC-CCceEEEccCC
Confidence 999 77776552 4567877765 3211 1 12111 1234568888876 3444444 45569999887
Q ss_pred CCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCC----CeEEEEECCCCcEEEEeccCCcce
Q psy15549 162 QDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVD----NTAIMWDVHKGKNLGILTEHKKFV 237 (621)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~v 237 (621)
+.. .+..+.. .+++|+|||++|++++.+ +.|++||+.+++.. .+..|...+
T Consensus 143 ~~~----------------------~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~ 197 (582)
T 3o4h_A 143 GLR----------------------ELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSF 197 (582)
T ss_dssp EEE----------------------EEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEE
T ss_pred cEE----------------------EeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCcc
Confidence 532 2222222 789999999999988776 78999999888764 667888889
Q ss_pred EEEEEcCCCCEEEEEeCCC--cEEEEEccCceee
Q psy15549 238 QGVAWDPKNQYVATLSSDR--SLRTYSIQSKKVI 269 (621)
Q Consensus 238 ~~l~~sp~~~~l~s~~~dg--~i~iwd~~~~~~~ 269 (621)
..++|+|||++|+++..++ .|++||+.+++..
T Consensus 198 ~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 198 SSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 9999999999999888888 8999999888765
No 151
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=1.2e-20 Score=186.84 Aligned_cols=240 Identities=11% Similarity=0.173 Sum_probs=160.9
Q ss_pred ecCCCCeEEEeccccccCCcceEEEEecCC-ceEEeeeccCccccccceeEEec--cccccccceeeccccccccCcEEE
Q psy15549 10 WHNRDPVLSVDIQLKQEKDNCYRIVTGGAD-SHVFDYLLKIPHRLKTGKIWYLT--ERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 10 ~~h~~~v~~l~~spd~~~~~~~~l~tg~~d-g~v~~~d~~~~~~~~~~~iw~~~--~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
..|...+.+++|+|+++ +|++++.+ +.|. +|++. ++.. .....+..+. .+.+
T Consensus 34 ~~~~~~~~~~~~spdg~-----~l~~~~~~~~~v~--------------~~~~~~~~~~~-----~~~~~~~~~~-~~~~ 88 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKR-----YLYVGVRPEFRVL--------------AYRIAPDDGAL-----TFAAESALPG-SLTH 88 (343)
T ss_dssp EECSSCCCCEEECTTSS-----EEEEEETTTTEEE--------------EEEECTTTCCE-----EEEEEEECSS-CCSE
T ss_pred EecCCCCceEEECCCCC-----EEEEeecCCCeEE--------------EEEecCCCCce-----eeccccccCC-CCcE
Confidence 45677899999999998 88888776 8999 88876 3221 1122233333 7899
Q ss_pred EEEccCCCEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe-CCCcEEEEEccCCCC
Q psy15549 87 VRFSPNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-DESTIIVWKQKTDQD 163 (621)
Q Consensus 87 l~~spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s-~dg~i~vwd~~~~~~ 163 (621)
++|+|+|++|++++ ++.|.+|++..+. .......+..+ ..+.+++|+|++++|++++ .++.|.+||+.+...
T Consensus 89 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 89 ISTDHQGQFVFVGSYNAGNVSVTRLEDGL----PVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTE----EEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred EEEcCCCCEEEEEecCCCeEEEEECCCCc----cccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 99999999887665 6679999995221 11233333333 4588999999999888877 899999999987322
Q ss_pred CCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCC--CcE--EEEec---cC--
Q psy15549 164 LPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS-VDNTAIMWDVHK--GKN--LGILT---EH-- 233 (621)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~-~dg~i~vwd~~~--~~~--~~~~~---~~-- 233 (621)
+... ............+.+++|+|++++|++++ .++.|.+|++.. ++. ...+. ..
T Consensus 164 ~~~~---------------~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~ 228 (343)
T 1ri6_A 164 LVAQ---------------DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS 228 (343)
T ss_dssp EEEE---------------EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred eeee---------------cccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccc
Confidence 1100 00011122345788999999999776555 789999999953 432 22222 11
Q ss_pred -CcceEEEEEcCCCCEEEEEe-CCCcEEEEEccC--c--eeeeecccCCCCCCCccccccccccccccCCcccceeeeee
Q psy15549 234 -KKFVQGVAWDPKNQYVATLS-SDRSLRTYSIQS--K--KVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTF 307 (621)
Q Consensus 234 -~~~v~~l~~sp~~~~l~s~~-~dg~i~iwd~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 307 (621)
...+..++|+|+|++|+++. .++.|.+||+.. + +.+..+.. ...+.+++|
T Consensus 229 ~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~------------------------~~~~~~~~~ 284 (343)
T 1ri6_A 229 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT------------------------ETQPRGFNV 284 (343)
T ss_dssp SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC------------------------SSSCCCEEE
T ss_pred ccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC------------------------CCccceEEE
Confidence 23566899999999887554 689999999972 2 22222211 112567899
Q ss_pred cCCCCeEEecc
Q psy15549 308 SPDGQLLIAPS 318 (621)
Q Consensus 308 spdg~~l~~~s 318 (621)
+|+|++|++++
T Consensus 285 s~dg~~l~~~~ 295 (343)
T 1ri6_A 285 DHSGKYLIAAG 295 (343)
T ss_dssp CTTSSEEEEEC
T ss_pred CCCCCEEEEec
Confidence 99998877665
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=1e-20 Score=192.71 Aligned_cols=211 Identities=14% Similarity=0.138 Sum_probs=152.6
Q ss_pred cCcEEEEEEccCCCEEEEEcCCceEEEEeccCccc------cccce--ecccccccCCCeEEEEECCCCCEEE----EEe
Q psy15549 81 QKAVNVVRFSPNGELLASGDDVGKEIWYLTERESG------IANVE--FASDLSRHQKAVNVVRFSPNGELLA----SGD 148 (621)
Q Consensus 81 ~~~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~------~~~~~--~~~~~~~h~~~V~~i~~sp~g~~l~----s~s 148 (621)
...++.+++++++.++++++.+++++|+....... ..... .......+...|.+++|+|+|++|+ +|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 34688999999999999998667999886532100 00000 0001123567899999999999999 788
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEE
Q psy15549 149 DESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT-STHLISGSVDNTAIMWDVHKGKNL 227 (621)
Q Consensus 149 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd-~~~l~s~~~dg~i~vwd~~~~~~~ 227 (621)
.|+.|+|||+.+......- ....+.....+.+|...|.+++|+|+ +.+|++++.||.|++||++++..+
T Consensus 116 ~d~~v~iwd~~~~~~~~~~----------~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~ 185 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQ----------QKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV 185 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCS----------SCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred CCceEEEEEccccccCCcC----------CcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence 9999999998765100000 00001113556789999999999997 789999999999999999998777
Q ss_pred EEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeee
Q psy15549 228 GILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTF 307 (621)
Q Consensus 228 ~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 307 (621)
....+|...|.+++|+|+|++|++|+.||.|++||++ ++....+..+.. ....+...+.+++|
T Consensus 186 ~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~----------------~~~~~~~~v~~v~w 248 (434)
T 2oit_A 186 CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF----------------YESDHPVRVLDVLW 248 (434)
T ss_dssp EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTT----------------CCTTSCEEEEEEEE
T ss_pred eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcc----------------cCCCCceeEEEEEE
Confidence 6777788999999999999999999999999999998 444444322110 00122346899999
Q ss_pred cCCCCeEEecc
Q psy15549 308 SPDGQLLIAPS 318 (621)
Q Consensus 308 spdg~~l~~~s 318 (621)
++++.++++.+
T Consensus 249 ~~~~~~l~~~~ 259 (434)
T 2oit_A 249 IGTYVFAIVYA 259 (434)
T ss_dssp EETTEEEEEEE
T ss_pred ecCceEEEEEc
Confidence 99998886544
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=1.2e-20 Score=192.19 Aligned_cols=212 Identities=13% Similarity=0.132 Sum_probs=156.0
Q ss_pred CCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEecccccc-------cccee-eccccccccCcE
Q psy15549 13 RDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESG-------IANVE-FASDLSRHQKAV 84 (621)
Q Consensus 13 ~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~-------~~~~~-~~~~~~~h~~~V 84 (621)
...+..+++++++. ++++|+.++ ++ ||+....... ..... .......|...|
T Consensus 36 ~~~~n~lavs~~~~-----~l~~~~~dg-v~--------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (434)
T 2oit_A 36 KERSSLLAVSNKYG-----LVFAGGASG-LQ--------------IFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPI 95 (434)
T ss_dssp CSCCBCEEEETTTT-----EEEEEETTE-EE--------------EEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCE
T ss_pred CCCccEEEEecCCC-----EEEEECCCE-EE--------------EEEchHhhhhcccccCcccccccCccccccCCCcc
Confidence 34689999999998 999999888 77 4443211000 00000 000112356789
Q ss_pred EEEEEccCCCEEE----EEc-CCceEEEEeccCcc----ccccceecccccccCCCeEEEEECCC-CCEEEEEeCCCcEE
Q psy15549 85 NVVRFSPNGELLA----SGD-DVGKEIWYLTERES----GIANVEFASDLSRHQKAVNVVRFSPN-GELLASGDDESTII 154 (621)
Q Consensus 85 ~~l~~spdg~~la----s~~-d~~v~iw~~~~~~~----~~~~~~~~~~~~~h~~~V~~i~~sp~-g~~l~s~s~dg~i~ 154 (621)
.+++|+|+|++|+ +|+ |+.|+||++..... ....+.....+.+|...|.+++|+|+ +.+|++++.||+|+
T Consensus 96 ~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~ 175 (434)
T 2oit_A 96 HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIA 175 (434)
T ss_dssp EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEE
T ss_pred cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEE
Confidence 9999999999999 666 88899999876411 00112234567789999999999997 78999999999999
Q ss_pred EEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC-
Q psy15549 155 VWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEH- 233 (621)
Q Consensus 155 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~- 233 (621)
+||++++... ....+|...|++++|+|+|++|++|+.||.|++||++ ++....+..|
T Consensus 176 iwD~~~~~~~---------------------~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~ 233 (434)
T 2oit_A 176 VLQVTETVKV---------------------CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPP 233 (434)
T ss_dssp EEEESSSEEE---------------------EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCT
T ss_pred EEEcCCCcce---------------------eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCc
Confidence 9999887432 3445688899999999999999999999999999998 6655555433
Q ss_pred ------CcceEEEEEcCCCCEEEEE-eCCC------cEEEEEccCc
Q psy15549 234 ------KKFVQGVAWDPKNQYVATL-SSDR------SLRTYSIQSK 266 (621)
Q Consensus 234 ------~~~v~~l~~sp~~~~l~s~-~~dg------~i~iwd~~~~ 266 (621)
...|.+++|++++.++++. ..+| .+++|+++..
T Consensus 234 ~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 234 FYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 3389999999988877643 3443 3899999764
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=1.9e-20 Score=185.98 Aligned_cols=286 Identities=10% Similarity=0.034 Sum_probs=184.5
Q ss_pred EEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeecccccccc-CcEEEEEEccCCCE
Q psy15549 17 LSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQ-KAVNVVRFSPNGEL 95 (621)
Q Consensus 17 ~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~ 95 (621)
+.+++++++. ++++++.++.|. +||+.+++.... +..+. ..+..++|+|+|++
T Consensus 3 ~g~~~~~~~~-----~~v~~~~~~~v~--------------~~d~~~~~~~~~-------~~~~~~~~~~~~~~s~dg~~ 56 (349)
T 1jmx_B 3 TGPALKAGHE-----YMIVTNYPNNLH--------------VVDVASDTVYKS-------CVMPDKFGPGTAMMAPDNRT 56 (349)
T ss_dssp -CCCCCTTCE-----EEEEEETTTEEE--------------EEETTTTEEEEE-------EECSSCCSSCEEEECTTSSE
T ss_pred ccccccCCCE-----EEEEeCCCCeEE--------------EEECCCCcEEEE-------EecCCCCCCceeEECCCCCE
Confidence 3567888887 999999999999 888776543221 22221 25788999999987
Q ss_pred EEEE-c-CCceEEEEeccCccccccceecccccc-c-----CCCeEEEEECCCCCEEEEEeCC------------CcEEE
Q psy15549 96 LASG-D-DVGKEIWYLTERESGIANVEFASDLSR-H-----QKAVNVVRFSPNGELLASGDDE------------STIIV 155 (621)
Q Consensus 96 las~-~-d~~v~iw~~~~~~~~~~~~~~~~~~~~-h-----~~~V~~i~~sp~g~~l~s~s~d------------g~i~v 155 (621)
++++ . ++.|.+|++..+ .....+.. + ...+..++|+|+|++|++++.+ +.|.+
T Consensus 57 ~~v~~~~~~~i~~~d~~t~-------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~ 129 (349)
T 1jmx_B 57 AYVLNNHYGDIYGIDLDTC-------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 129 (349)
T ss_dssp EEEEETTTTEEEEEETTTT-------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred EEEEeCCCCcEEEEeCCCC-------cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEE
Confidence 6544 3 778999998765 33333322 1 2347889999999999998865 89999
Q ss_pred EEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCc
Q psy15549 156 WKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKK 235 (621)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 235 (621)
||+.+++....+ .... +...+.+++|+|+|+ +++++ +.|.+||+.+++.+..+..+..
T Consensus 130 ~d~~~~~~~~~~------------------~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~ 187 (349)
T 1jmx_B 130 FSTADGLEAKPV------------------RTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNW 187 (349)
T ss_dssp EEGGGGGGBCCS------------------EEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTC
T ss_pred EECCCcccccee------------------eecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceecccccccc
Confidence 999885433221 2222 334688999999999 65554 3499999999988877653320
Q ss_pred ------------------------ceEEEEEcCCCCEEEEEe-CCCcEEEEEccCceeeeecccCCCCCCCccccccccc
Q psy15549 236 ------------------------FVQGVAWDPKNQYVATLS-SDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVV 290 (621)
Q Consensus 236 ------------------------~v~~l~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (621)
....+++++++....... ....+..++..+++... +.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------- 249 (349)
T 1jmx_B 188 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT-QE----------------- 249 (349)
T ss_dssp CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE-EE-----------------
T ss_pred CCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEe-cc-----------------
Confidence 233455555442110000 00011123333322110 00
Q ss_pred cccccCCcccceeeeeecC-CCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecC
Q psy15549 291 PLFHDDTMKSFFRRLTFSP-DGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELK 369 (621)
Q Consensus 291 ~~~~~~~~~~~i~~~~~sp-dg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (621)
.......+.+++|+| +|+++++
T Consensus 250 ----~~~~~~~~~~~~~sp~dg~~l~~----------------------------------------------------- 272 (349)
T 1jmx_B 250 ----FADLTELYFTGLRSPKDPNQIYG----------------------------------------------------- 272 (349)
T ss_dssp ----EEECSSCEEEEEECSSCTTEEEE-----------------------------------------------------
T ss_pred ----cccCCCcceeeEecCCCCCEEEE-----------------------------------------------------
Confidence 000112345667777 7666543
Q ss_pred CCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcc
Q psy15549 370 PSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIP 449 (621)
Q Consensus 370 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~ 449 (621)
+ ++.|++||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+.+++.+..
T Consensus 273 -----------------~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 273 -----------------V--LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp -----------------E--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred -----------------E--cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEEecCCCeEEEEeccccceeee
Confidence 2 57899999999988777753 34578999999999999988899999999999887776
Q ss_pred cCCC
Q psy15549 450 YVPP 453 (621)
Q Consensus 450 ~~~~ 453 (621)
+..+
T Consensus 332 ~~~~ 335 (349)
T 1jmx_B 332 IKLP 335 (349)
T ss_dssp EECS
T ss_pred eecC
Confidence 6554
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=5e-21 Score=189.05 Aligned_cols=293 Identities=11% Similarity=0.048 Sum_probs=201.2
Q ss_pred CEEEEEc-CCceEEEEeccCccccccceecccccc-cCC-CeEEEEECCCCCEEE-EEeCCCcEEEEEccCCCCCCCCCC
Q psy15549 94 ELLASGD-DVGKEIWYLTERESGIANVEFASDLSR-HQK-AVNVVRFSPNGELLA-SGDDESTIIVWKQKTDQDLPEFPS 169 (621)
Q Consensus 94 ~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~-h~~-~V~~i~~sp~g~~l~-s~s~dg~i~vwd~~~~~~~~~~~~ 169 (621)
.+|++++ ++.|.+||...+ +....+.. +.. .+..++|+|+|++++ ++..++.|.+||+.+++.+..+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~-- 72 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM-------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI-- 72 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE--
T ss_pred cEEEEcCCCCeEEEEECCCC-------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeE--
Confidence 3566665 889999999876 33443332 211 478899999998664 5566789999999887653211
Q ss_pred CCcccccccccceeeeeeecCC----CCCeEEEEECCCCCEEEEEe------------CCCeEEEEECCCCcEEEEeccC
Q psy15549 170 SNLDEENVNKEHWIVTKILRGH----LEDVYDISWSPTSTHLISGS------------VDNTAIMWDVHKGKNLGILTEH 233 (621)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~----~~~v~~i~~spd~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~ 233 (621)
..++ ...+.+++|+|+|++|++++ .++.|.+||+.+++.+..+..
T Consensus 73 ------------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~- 133 (337)
T 1pby_B 73 ------------------DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA- 133 (337)
T ss_dssp ------------------ECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred ------------------EcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence 1111 22567899999999998886 579999999999888777754
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCe
Q psy15549 234 KKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQL 313 (621)
Q Consensus 234 ~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~ 313 (621)
...+.+++|+|++++|+++ ++.|.+||+.+++....+..... ...+.|+|+|++
T Consensus 134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~------------------------~~~~~~s~dg~~ 187 (337)
T 1pby_B 134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW------------------------EAETYAQPDVLA 187 (337)
T ss_dssp CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT------------------------TTTTBCCCBCCC
T ss_pred CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc------------------------CCCceeCCCccE
Confidence 4557889999999988877 68899999999887765532210 023478999998
Q ss_pred EEeccccccCCCCCCc--ceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCC
Q psy15549 314 LIAPSGCLENSDSTRK--PISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATEN 391 (621)
Q Consensus 314 l~~~s~~~~~~d~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 391 (621)
+++... ..... +|... .... .. ..| . ....
T Consensus 188 l~~~~~-----~~~~~~~~~~~~------~~~~-------~~-------~~~------------------~-----~~~~ 219 (337)
T 1pby_B 188 VWNQHE-----SSGVMATPFYTA------RKDI-------DP-------ADP------------------T-----AYRT 219 (337)
T ss_dssp CCCCCT-----TTTEEEEEEEEE------BTTS-------CT-------TSG------------------G-----GEEE
T ss_pred Eeeecc-----CCCceeeeeecc------cccc-------cc-------ccc------------------c-----cccc
Confidence 876551 11110 00000 0000 00 000 0 0112
Q ss_pred cEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccccCCCCCCCCccc
Q psy15549 392 NILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGEPVRS 471 (621)
Q Consensus 392 ~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 471 (621)
.|.+||+.+++........+...+.+++|+|||++|+++ ++.|++||+.+++....+... .....+.++++++.++.
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~ 296 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWL 296 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEE
T ss_pred ceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEE
Confidence 689999999887533223466678899999999999988 799999999998877666543 34567789999998887
Q ss_pred CCCcccHHHhcccC-cccccc
Q psy15549 472 EDKPRSAEQAKGEG-KVLGEK 491 (621)
Q Consensus 472 ~~~~~~~~~w~~~~-~~~~~~ 491 (621)
+..++.+.+|+... +.+..+
T Consensus 297 ~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 297 GGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp ESBSSEEEEEETTTCCEEEEE
T ss_pred EcCCCcEEEEECcCCcEEEEE
Confidence 78889999998653 433333
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=3.3e-21 Score=205.52 Aligned_cols=269 Identities=14% Similarity=0.135 Sum_probs=188.1
Q ss_pred cCcEEEEEEccCCCEEEEEc--CCceEEEEeccCccccccceecccccccC-CCeEEEEECCCCCEEEEEeC---CCcEE
Q psy15549 81 QKAVNVVRFSPNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQ-KAVNVVRFSPNGELLASGDD---ESTII 154 (621)
Q Consensus 81 ~~~V~~l~~spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~-~~V~~i~~sp~g~~l~s~s~---dg~i~ 154 (621)
..+|++++|+|||+.||+++ ++.+.||++..+ .. ..+..|. ..+..++|+|| +++++++. +...+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-------~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~ 91 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-------ET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHA 91 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT-------EE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC-------Cc-EeeecccccccccccCCCC-eEEEEeccCCCCcceE
Confidence 56899999999999999876 788999998554 22 3344454 68999999999 77777765 45567
Q ss_pred EEEccC--CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEEEEec
Q psy15549 155 VWKQKT--DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTH-LISGSVDNTAIMWDVHKGKNLGILT 231 (621)
Q Consensus 155 vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~-l~s~~~dg~i~vwd~~~~~~~~~~~ 231 (621)
+|.+.. .... ..+.. ...+...+|+||++. +++++.++.+.+||+.+++......
T Consensus 92 l~~~~~~~~g~~---------------------~~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~ 149 (582)
T 3o4h_A 92 LFKVNTSRPGEE---------------------QRLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR 149 (582)
T ss_dssp EEEEETTSTTCC---------------------EECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred EEEEeccCCCcc---------------------ccccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec
Confidence 766654 2221 11111 223446688888753 3334444556699999887655544
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCC----CcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeee
Q psy15549 232 EHKKFVQGVAWDPKNQYVATLSSD----RSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTF 307 (621)
Q Consensus 232 ~~~~~v~~l~~sp~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 307 (621)
.+. .+++|+|||++|++++.+ +.|++||+.+++... +. .+...+..++|
T Consensus 150 ~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~-l~-----------------------~~~~~~~~~~~ 202 (582)
T 3o4h_A 150 LPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV-FD-----------------------SGEGSFSSASI 202 (582)
T ss_dssp ESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE-EC-----------------------CSSCEEEEEEE
T ss_pred CCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE-ee-----------------------cCCCccccceE
Confidence 333 789999999999988877 789999998876542 22 22344688999
Q ss_pred cCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEE
Q psy15549 308 SPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAV 387 (621)
Q Consensus 308 spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (621)
||||++|+++.
T Consensus 203 SpDG~~l~~~~--------------------------------------------------------------------- 213 (582)
T 3o4h_A 203 SPGMKVTAGLE--------------------------------------------------------------------- 213 (582)
T ss_dssp CTTSCEEEEEE---------------------------------------------------------------------
T ss_pred CCCCCEEEEcc---------------------------------------------------------------------
Confidence 99999988432
Q ss_pred EcCC--cEEEEeCCCCceeEEEecccccceEEEE--------EcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcc
Q psy15549 388 ATEN--NILLYDTQHASPFAFIANIHYTKLTDIT--------WSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEE 457 (621)
Q Consensus 388 ~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~--------~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~ 457 (621)
.++ .|++||+.+++.. .+ ..|...+..++ |+|||.++++++.||.+++|++ ++... .+.+.+
T Consensus 214 -~~~~~~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v 285 (582)
T 3o4h_A 214 -TAREARLVTVDPRDGSVE-DL-ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNH 285 (582)
T ss_dssp -CSSCEEEEEECTTTCCEE-EC-CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEE
T ss_pred -CCCeeEEEEEcCCCCcEE-Ec-cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCce
Confidence 334 7899999988876 43 45766677777 9999988899999999999999 55444 233456
Q ss_pred cccCCCCCCCCcccCCCc---ccHHHhcccC
Q psy15549 458 SKENDPTKGEPVRSEDKP---RSAEQAKGEG 485 (621)
Q Consensus 458 ~~~~~~~~~~~~~s~~~~---~~~~~w~~~~ 485 (621)
..+.++ ++..+++.+.+ ..+++|+..+
T Consensus 286 ~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 286 GRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 667777 77776655433 4455665544
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=1.6e-20 Score=189.48 Aligned_cols=289 Identities=10% Similarity=0.033 Sum_probs=187.4
Q ss_pred EeccccccCCcceEEEEecC-CceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCCEEE
Q psy15549 19 VDIQLKQEKDNCYRIVTGGA-DSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLA 97 (621)
Q Consensus 19 l~~spd~~~~~~~~l~tg~~-dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 97 (621)
.+|||||+ +|++++. +|...+| +||+.+++.... ..++...+..++|+|||+.|+
T Consensus 41 ~~~SpDg~-----~l~~~~~~~g~~~l~------------~~d~~~g~~~~l-------t~~~~~~~~~~~~spdg~~l~ 96 (388)
T 3pe7_A 41 KCFTRDGS-----KLLFGGAFDGPWNYY------------LLDLNTQVATQL-------TEGRGDNTFGGFLSPDDDALF 96 (388)
T ss_dssp CCBCTTSC-----EEEEEECTTSSCEEE------------EEETTTCEEEEC-------CCSSCBCSSSCEECTTSSEEE
T ss_pred ccCCCCCC-----EEEEEEcCCCCceEE------------EEeCCCCceEEe-------eeCCCCCccceEEcCCCCEEE
Confidence 88999998 8888876 7865544 778776654322 445555666778999999999
Q ss_pred EEc-CCceEEEEeccCccccccceecccccccCCCeEEEE--ECCCCCEEEEE----------------------eCCCc
Q psy15549 98 SGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVR--FSPNGELLASG----------------------DDEST 152 (621)
Q Consensus 98 s~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~--~sp~g~~l~s~----------------------s~dg~ 152 (621)
.++ +..+.+|++..+. ....+..+...+.... ++|++++++.. ..+..
T Consensus 97 ~~~~~~~l~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 97 YVKDGRNLMRVDLATLE-------ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp EEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred EEeCCCeEEEEECCCCc-------ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 988 6689999998763 2222333444444333 48999988743 23467
Q ss_pred EEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC-CCCEEEEEeCC------CeEEEEECCCCc
Q psy15549 153 IIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP-TSTHLISGSVD------NTAIMWDVHKGK 225 (621)
Q Consensus 153 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-d~~~l~s~~~d------g~i~vwd~~~~~ 225 (621)
|.+||+.+++. ..+..+...+..+.|+| ||+.|+.+..+ ..|.++|+..+.
T Consensus 170 l~~~d~~~g~~----------------------~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 170 LMRVDLKTGES----------------------TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp EEEEETTTCCE----------------------EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred EEEEECCCCce----------------------EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 99999988753 33445667789999999 99998887753 378888886654
Q ss_pred EEEEeccCC--cceEEEEEcCCCCEEEEEeC-CC----cEEEEEccCceeeeecccCCCCCCCccccccccccccccCCc
Q psy15549 226 NLGILTEHK--KFVQGVAWDPKNQYVATLSS-DR----SLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTM 298 (621)
Q Consensus 226 ~~~~~~~~~--~~v~~l~~sp~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (621)
. ..+..+. ..+..++|+|||+.|+..+. ++ .|.+||+.+++......... . . ..
T Consensus 228 ~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~------~------~------~~ 288 (388)
T 3pe7_A 228 M-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA------C------S------HL 288 (388)
T ss_dssp C-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC------E------E------EE
T ss_pred e-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC------c------e------ee
Confidence 4 4444444 35788999999998766544 22 39999998876432211000 0 0 00
Q ss_pred ccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCcc
Q psy15549 299 KSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFK 378 (621)
Q Consensus 299 ~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (621)
......++|+|||+.|++... +
T Consensus 289 ~~~~~~~~~spdg~~l~~~~~-----~----------------------------------------------------- 310 (388)
T 3pe7_A 289 MSNYDGSLMVGDGSDAPVDVQ-----D----------------------------------------------------- 310 (388)
T ss_dssp EECTTSSEEEEEECCC----------------------------------------------------------------
T ss_pred eecCCCCeEccCCCcceeEee-----e-----------------------------------------------------
Confidence 000123478888887775430 0
Q ss_pred CCCcEEEEEEcCCcEEEEeCCCCceeEEEeccccc-----------ceEEEEEcCCCCeEEEEe-CCCcEEEEEec
Q psy15549 379 LPYRIVIAVATENNILLYDTQHASPFAFIANIHYT-----------KLTDITWSSDGKVLIASS-TDGYCSIISFG 442 (621)
Q Consensus 379 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~-----------~v~~~~~spdg~~l~s~s-~dg~i~iw~~~ 442 (621)
..-.....+..|++||+.+++..... .|.. .+.+++|+|||++|+.++ .+|...||.++
T Consensus 311 ---~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 311 ---DSGYKIENDPFLYVFNMKNGTQHRVA--RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ---------CCCCEEEEEETTTTEEEEEE--ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ---ccccccCCCCEEEEEeccCCceEEec--cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 00011124568999999987654332 2444 578899999999888665 57888888765
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=1.1e-18 Score=174.24 Aligned_cols=244 Identities=8% Similarity=0.106 Sum_probs=160.5
Q ss_pred CCCCeEEEeccccccCCcceEEEEecCC----ceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEE
Q psy15549 12 NRDPVLSVDIQLKQEKDNCYRIVTGGAD----SHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVV 87 (621)
Q Consensus 12 h~~~v~~l~~spd~~~~~~~~l~tg~~d----g~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l 87 (621)
+......++|+||++ +|++++.+ +.|. +|++..... .+........+......+
T Consensus 48 ~~~~p~~l~~spdg~-----~l~~~~~~~~~~~~v~--------------~~~~~~~~g---~~~~~~~~~~~~~~p~~~ 105 (361)
T 3scy_A 48 EVANPSYLIPSADGK-----FVYSVNEFSKDQAAVS--------------AFAFDKEKG---TLHLLNTQKTMGADPCYL 105 (361)
T ss_dssp ECSCCCSEEECTTSS-----EEEEEECCSSTTCEEE--------------EEEEETTTT---EEEEEEEEECSSSCEEEE
T ss_pred cCCCCceEEECCCCC-----EEEEEEccCCCCCcEE--------------EEEEeCCCC---cEEEeeEeccCCCCcEEE
Confidence 566788899999998 88888875 7888 787765311 111223334455667788
Q ss_pred EEccCCCEEEEEc--CCceEEEEeccCccccccceeccc--------ccccCCCeEEEEECCCCCEEEEEe-CCCcEEEE
Q psy15549 88 RFSPNGELLASGD--DVGKEIWYLTERESGIANVEFASD--------LSRHQKAVNVVRFSPNGELLASGD-DESTIIVW 156 (621)
Q Consensus 88 ~~spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~--------~~~h~~~V~~i~~sp~g~~l~s~s-~dg~i~vw 156 (621)
++ ++++|++++ ++.+.+|++...+... ....... ...+...+.+++|+|+|++|++++ .++.|.+|
T Consensus 106 ~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~ 182 (361)
T 3scy_A 106 TT--NGKNIVTANYSGGSITVFPIGQDGALL-PASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKF 182 (361)
T ss_dssp EE--CSSEEEEEETTTTEEEEEEBCTTSCBC-SCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EE--CCCEEEEEECCCCEEEEEEeCCCCcCc-ccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEE
Confidence 88 888887775 6779999997543210 0000000 111233468899999999776655 57899999
Q ss_pred EccCCCC------CCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCcE--E
Q psy15549 157 KQKTDQD------LPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS-VDNTAIMWDVHKGKN--L 227 (621)
Q Consensus 157 d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~-~dg~i~vwd~~~~~~--~ 227 (621)
++..... +... -........+...+..++|+|||++|++++ .++.|.+|++.++.. +
T Consensus 183 ~~~~~~~~~~~~~l~~~--------------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 183 NINPNANADNKEKFLTK--------------GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EECTTCCTTTCCCCEEE--------------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEcCCCCcccccceeec--------------ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 9876542 1000 000012233456688999999999888777 589999999987754 2
Q ss_pred EEe---ccCCcceEEEEEcCCCCEEEEEeCC--CcEEEEEcc--Cce--eeeecccCCCCCCCccccccccccccccCCc
Q psy15549 228 GIL---TEHKKFVQGVAWDPKNQYVATLSSD--RSLRTYSIQ--SKK--VISRACRSKLPVDSSHELFDKVVPLFHDDTM 298 (621)
Q Consensus 228 ~~~---~~~~~~v~~l~~sp~~~~l~s~~~d--g~i~iwd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (621)
..+ ..+......++|+|+|++|+++..+ +.|.+|++. +++ .+..+..
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~------------------------ 304 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT------------------------ 304 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC------------------------
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC------------------------
Confidence 222 2233456899999999998777665 899999996 333 2222211
Q ss_pred ccceeeeeecCCCCeEEecc
Q psy15549 299 KSFFRRLTFSPDGQLLIAPS 318 (621)
Q Consensus 299 ~~~i~~~~~spdg~~l~~~s 318 (621)
...+.+++|+|||++|++++
T Consensus 305 g~~~~~~~~spdg~~l~~~~ 324 (361)
T 3scy_A 305 GIHPRNFIITPNGKYLLVAC 324 (361)
T ss_dssp SSCCCEEEECTTSCEEEEEE
T ss_pred CCCCceEEECCCCCEEEEEE
Confidence 12346889999999887765
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=1.5e-19 Score=197.96 Aligned_cols=340 Identities=13% Similarity=0.141 Sum_probs=206.3
Q ss_pred CCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccC-----cEEEE
Q psy15549 13 RDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQK-----AVNVV 87 (621)
Q Consensus 13 ~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l 87 (621)
.....+++|+||++ +|+++ |+.|+ +|++.+++.... +.+|.. ....+
T Consensus 16 ~~~~~~~~w~~dg~-----~~~~~--~~~i~--------------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 67 (740)
T 4a5s_A 16 RLKLYSLRWISDHE-----YLYKQ--ENNIL--------------VFNAEYGNSSVF-------LENSTFDEFGHSINDY 67 (740)
T ss_dssp CCCCCCEEECSSSE-----EEEEE--TTEEE--------------EEETTTCCEEEE-------ECTTTTTTCCSCCCEE
T ss_pred cccccccEECCCCc-----EEEEc--CCcEE--------------EEECCCCceEEE-------Eechhhhhhcccccce
Confidence 34577999999998 88887 89999 888877764322 344432 33458
Q ss_pred EEccCCCEEEEEcC----------CceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q psy15549 88 RFSPNGELLASGDD----------VGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWK 157 (621)
Q Consensus 88 ~~spdg~~las~~d----------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd 157 (621)
+|||||++|+.+++ +.+.+|++.++ . ...+..|...+..++|||||+.||.+. ++.|++|+
T Consensus 68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~-------~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~ 138 (740)
T 4a5s_A 68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-------Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKI 138 (740)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-------E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEES
T ss_pred EECCCCCEEEEEECCeeeEEEccceEEEEEECCCC-------c-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEE
Confidence 89999999998874 45679999876 2 234667778899999999999999985 68999999
Q ss_pred ccCCCCCCCCCCCCcccccccccceeeeeeecCCC---------CCeEEEEECCCCCEEEEEeCCC--------------
Q psy15549 158 QKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHL---------EDVYDISWSPTSTHLISGSVDN-------------- 214 (621)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~i~~spd~~~l~s~~~dg-------------- 214 (621)
+.++...+....... ...+.++. .....+.|||||++||.++.|.
T Consensus 139 ~~~~~~~~lt~~g~~------------~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~ 206 (740)
T 4a5s_A 139 EPNLPSYRITWTGKE------------DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE 206 (740)
T ss_dssp STTSCCEECCSCCBT------------TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST
T ss_pred CCCCceEEEcCCCCc------------cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC
Confidence 988764311100000 00111111 2224589999999999875321
Q ss_pred ----------------------eEEEEECCC---Cc--EEEEec------cCCcceEEEEEcCCCCEEEEEeC----CCc
Q psy15549 215 ----------------------TAIMWDVHK---GK--NLGILT------EHKKFVQGVAWDPKNQYVATLSS----DRS 257 (621)
Q Consensus 215 ----------------------~i~vwd~~~---~~--~~~~~~------~~~~~v~~l~~sp~~~~l~s~~~----dg~ 257 (621)
.|++||+.+ ++ ....+. +|...+..++|+|||+.++.... +..
T Consensus 207 ~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~ 286 (740)
T 4a5s_A 207 SLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSV 286 (740)
T ss_dssp TCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE
T ss_pred CCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE
Confidence 588899988 73 223333 37788999999999997665543 236
Q ss_pred EEEEEccCce----eeeecccCCCCCCCccccccccccccccCCcccc-----eeeeeecCCCCeEE-eccccccCCCCC
Q psy15549 258 LRTYSIQSKK----VISRACRSKLPVDSSHELFDKVVPLFHDDTMKSF-----FRRLTFSPDGQLLI-APSGCLENSDST 327 (621)
Q Consensus 258 i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~~~~~spdg~~l~-~~s~~~~~~d~~ 327 (621)
|.+||+.+++ +...... ....+..+ ...++|+|||+.|+ ..+. .++.
T Consensus 287 i~~~d~~tg~~~~~~~~~~~l-------------------~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~----~~G~ 343 (740)
T 4a5s_A 287 MDICDYDESSGRWNCLVARQH-------------------IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN----EEGY 343 (740)
T ss_dssp EEEEEEETTTTEEEECGGGCE-------------------EEECSSSCSSSSSCCCCEECTTSSEEEEEEEC----TTSC
T ss_pred EEEEECCCCccccceeEEEEe-------------------eeccCCceEccCcCCCceEcCCCCEEEEEEEc----CCCc
Confidence 9999998876 2211100 00011112 23689999999877 5542 3343
Q ss_pred CcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcC-----C--cEEEEeCCC
Q psy15549 328 RKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATE-----N--NILLYDTQH 400 (621)
Q Consensus 328 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g--~i~iwd~~~ 400 (621)
..+|-.. ........+......+..+.. .+++.|+..+.. + .|+..++..
T Consensus 344 ~~l~~~~------~~~~~~~~lT~g~~~v~~~~~-----------------~d~~~i~f~~~~~~~~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 344 RHICYFQ------IDKKDCTFITKGTWEVIGIEA-----------------LTSDYLYYISNEYKGMPGGRNLYKIQLID 400 (740)
T ss_dssp EEEEEEE------TTCSSCEESCCSSSCEEEEEE-----------------ECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred eEEEEEE------CCCCceEecccCCEEEEEEEE-----------------EeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence 3333221 001222223322322222211 124555544443 2 455555554
Q ss_pred CceeEEEec---ccccceEEEEEcCCCCeEEEEeCC---CcEEEEEecCCcCC
Q psy15549 401 ASPFAFIAN---IHYTKLTDITWSSDGKVLIASSTD---GYCSIISFGDNEIG 447 (621)
Q Consensus 401 ~~~~~~~~~---~h~~~v~~~~~spdg~~l~s~s~d---g~i~iw~~~~~~~~ 447 (621)
+.....+.. +....+..+.|||+|++++..... ..+.+++..+++..
T Consensus 401 ~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~ 453 (740)
T 4a5s_A 401 YTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGL 453 (740)
T ss_dssp EEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEE
T ss_pred CCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 433223321 123568899999999987755433 35777777766443
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=9e-21 Score=207.63 Aligned_cols=329 Identities=11% Similarity=0.048 Sum_probs=202.9
Q ss_pred EEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCC---CeEEEEECCCCCEEEEEeC---------CCcE
Q psy15549 86 VVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQK---AVNVVRFSPNGELLASGDD---------ESTI 153 (621)
Q Consensus 86 ~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~---~V~~i~~sp~g~~l~s~s~---------dg~i 153 (621)
+++|+|||++++++.++.|++|++..+ .....+.+|.. .+.+++|||||++|++++. ++.|
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i 92 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETG-------QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATY 92 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSC-------CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCC-------cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEE
Confidence 678999998887777999999999876 33333334433 4889999999999998876 7899
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cc
Q psy15549 154 IVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGIL-TE 232 (621)
Q Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~ 232 (621)
++||+.+++.+... . ....+..++|||||+.|+++. ++.|++|++.+++..... .+
T Consensus 93 ~~~d~~~g~~~~~~-------------------~---l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~ 149 (719)
T 1z68_A 93 YIYDLSNGEFVRGN-------------------E---LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNG 149 (719)
T ss_dssp EEEETTTTEECCSS-------------------C---CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCC
T ss_pred EEEECCCCccccce-------------------e---cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCC
Confidence 99999988642100 1 124578899999999999986 789999999888765433 22
Q ss_pred CCcce-----------------EEEEEcCCCCEEEEEeCCC----------------------------------cEEEE
Q psy15549 233 HKKFV-----------------QGVAWDPKNQYVATLSSDR----------------------------------SLRTY 261 (621)
Q Consensus 233 ~~~~v-----------------~~l~~sp~~~~l~s~~~dg----------------------------------~i~iw 261 (621)
+...| .+++|+|||++|++++.|. .|++|
T Consensus 150 ~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 150 RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 22212 4899999999999988652 67788
Q ss_pred EccCceee--eecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCccee----eee
Q psy15549 262 SIQSKKVI--SRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPIS----VTH 335 (621)
Q Consensus 262 d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~----~~~ 335 (621)
|+.+++.. ..+... .....+...+.+++||||++++++..... .....+.+|+ ...
T Consensus 230 d~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~SpD~~~~~~~~~~~-~~~~~l~~~d~~~~~~~ 291 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVP-----------------AMIASSDYYFSWLTWVTDERVCLQWLKRV-QNVSVLSICDFREDWQT 291 (719)
T ss_dssp ESSCHHHHCCEECCCC-----------------HHHHTSCEEEEEEEESSSSEEEEEEEESS-TTEEEEEEEEECSSSSS
T ss_pred ECCCCCccceeEccCC-----------------ccCCCCcceEEEeEEeCCCeEEEEEeccc-cCeEEEEEEcccCCCCC
Confidence 87776532 011000 00112445678999999987766643110 0112344555 221
Q ss_pred eeeecccCCCceec----CCcccceeeeeccceeeecCCCCCCCCccCCCcEEEE--EEcCC--cEEEEeCCCCceeEEE
Q psy15549 336 VFTRACLNKPAVCL----PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIA--VATEN--NILLYDTQHASPFAFI 407 (621)
Q Consensus 336 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~ 407 (621)
... ...+ ..+...+.. .....+.|+++++.++. ...+| .|++||+.+++ ...+
T Consensus 292 g~~-------~~~~~~~~~~~~~~~~~-----------~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~l 352 (719)
T 1z68_A 292 WDC-------PKTQEHIEESRTGWAGG-----------FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQI 352 (719)
T ss_dssp EEC-------CGGGEEEEECSSSCSSS-----------SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEEC
T ss_pred Cce-------EEEEecccccCCceEcc-----------ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEec
Confidence 110 0111 122222220 00002234447775554 33444 68888887776 3344
Q ss_pred ecccccceEEEEEcCCCCeEEEEeCC-----CcEEEEEecC--CcC-CcccC----CCCCcccccCCCCCCCCcccC-CC
Q psy15549 408 ANIHYTKLTDITWSSDGKVLIASSTD-----GYCSIISFGD--NEI-GIPYV----PPSGEESKENDPTKGEPVRSE-DK 474 (621)
Q Consensus 408 ~~~h~~~v~~~~~spdg~~l~s~s~d-----g~i~iw~~~~--~~~-~~~~~----~~~~~~~~~~~~~~~~~~~s~-~~ 474 (621)
..+...+..+.++ +++.|+..+.+ +.+++|.+.. +.. ...+. .+........++++++.++.. +.
T Consensus 353 -t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~ 430 (719)
T 1z68_A 353 -TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYG 430 (719)
T ss_dssp -SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECC
T ss_pred -ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCC
Confidence 3355568888888 88888777665 8899999874 321 12222 233445566788888866532 22
Q ss_pred c--ccHHHhcc
Q psy15549 475 P--RSAEQAKG 483 (621)
Q Consensus 475 ~--~~~~~w~~ 483 (621)
+ ..+.+|+.
T Consensus 431 ~~~p~~~l~d~ 441 (719)
T 1z68_A 431 PGIPISTLHDG 441 (719)
T ss_dssp BSSCEEEEECS
T ss_pred CCCCeEEEEEC
Confidence 2 24455654
No 161
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=8e-19 Score=174.14 Aligned_cols=238 Identities=10% Similarity=0.174 Sum_probs=158.8
Q ss_pred CCCCeEEEeccccccCCcceEEEEec--CCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEE
Q psy15549 12 NRDPVLSVDIQLKQEKDNCYRIVTGG--ADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRF 89 (621)
Q Consensus 12 h~~~v~~l~~spd~~~~~~~~l~tg~--~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 89 (621)
+......++|+|||+ +++++. .++.|. +|++..+.. .....+..+...+..++|
T Consensus 38 ~~~~p~~~a~spdg~-----l~~~~~~~~~~~v~--------------~~~~~~g~~-----~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-----LYSVDKEDDEGGIA--------------AWQIDGQTA-----HKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp ECSCCCCEEECTTCE-----EEEEEEETTEEEEE--------------EEEEETTEE-----EEEEEEEEESCCCSEEEE
T ss_pred ccCCcceEEEccCCe-----EEEEEecCCCceEE--------------EEEecCCcE-----EEeeeeecCCCCCEEEEE
Confidence 445788899999995 555553 368888 888865432 123334557778999999
Q ss_pred ccCCCEEEEEc--CCceEEEEeccCccccccceecccccc---------cCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q psy15549 90 SPNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSR---------HQKAVNVVRFSPNGELLASGDDESTIIVWKQ 158 (621)
Q Consensus 90 spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~---------h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~ 158 (621)
+|||++|++++ ++.+.+|++...+. ...+..+.. +...+.+++|+|+|+++++...++.|++|++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~----~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGA----LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSC----EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCC----eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEE
Confidence 99999888876 67799999964321 122222211 2235889999999996666677889999999
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeee-cCCCCCeEEEEECCCCCEEEE-EeCCCeEEEEECCC--CcE--EEEecc
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKIL-RGHLEDVYDISWSPTSTHLIS-GSVDNTAIMWDVHK--GKN--LGILTE 232 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~spd~~~l~s-~~~dg~i~vwd~~~--~~~--~~~~~~ 232 (621)
.....+. ....+ ......+..++|+|||++|++ +..++.|.+|++.. ++. +..+..
T Consensus 170 ~~~g~~~------------------~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 231 (347)
T 3hfq_A 170 SDAGQLS------------------EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT 231 (347)
T ss_dssp CTTSCEE------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred CCCCcEE------------------EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence 8322211 01111 123346788999999996666 45678999999874 443 222222
Q ss_pred CC------cceEEEEEcCCCCEEE-EEeCCCcEEEEEccCc---eeeeecccCCCCCCCccccccccccccccCCcccce
Q psy15549 233 HK------KFVQGVAWDPKNQYVA-TLSSDRSLRTYSIQSK---KVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFF 302 (621)
Q Consensus 233 ~~------~~v~~l~~sp~~~~l~-s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 302 (621)
.. ..+..++|+|+|++|+ +...++.|.+|++... +.+..+.. ....+
T Consensus 232 ~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-----------------------~~~~~ 288 (347)
T 3hfq_A 232 IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST-----------------------EGDFP 288 (347)
T ss_dssp SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC-----------------------SSSCC
T ss_pred cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec-----------------------CCCCc
Confidence 22 4588999999999875 4556899999999732 22222211 12234
Q ss_pred eeeeecCCCCeEEecc
Q psy15549 303 RRLTFSPDGQLLIAPS 318 (621)
Q Consensus 303 ~~~~~spdg~~l~~~s 318 (621)
..++|+|||++|++++
T Consensus 289 ~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 289 RDFDLDPTEAFVVVVN 304 (347)
T ss_dssp CEEEECTTSSEEEEEE
T ss_pred CeEEECCCCCEEEEEE
Confidence 7899999999887765
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=2e-18 Score=172.39 Aligned_cols=260 Identities=11% Similarity=0.086 Sum_probs=170.3
Q ss_pred cCcEEEEEEccCCCEEEEEcCCceEEEEec-cCccccccceecccccccCCCeEEEEECCCCCE--EEEEe---------
Q psy15549 81 QKAVNVVRFSPNGELLASGDDVGKEIWYLT-ERESGIANVEFASDLSRHQKAVNVVRFSPNGEL--LASGD--------- 148 (621)
Q Consensus 81 ~~~V~~l~~spdg~~las~~d~~v~iw~~~-~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~--l~s~s--------- 148 (621)
...+..++|+|+|++|++++.+.|.+|++. .+. +........+ +.+.+++|+|+|++ ++++.
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~-----~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTE-----IVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTE-----EEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCC-----EEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccc
Confidence 346889999999999988885599999997 441 1111111111 23556899999994 55553
Q ss_pred ----CCCcEEEEEccC-CCCCCCCCCCCcccccccccceeeeeee-cCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEEC
Q psy15549 149 ----DESTIIVWKQKT-DQDLPEFPSSNLDEENVNKEHWIVTKIL-RGHLEDVYDISWSPTSTHLISGSV-DNTAIMWDV 221 (621)
Q Consensus 149 ----~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~spd~~~l~s~~~-dg~i~vwd~ 221 (621)
.++.+.+|++.. ++.... ...+ ..+...+.+++|+|||++|++++. ++.|++|++
T Consensus 113 ~~~~~~g~v~v~~~~~~g~~~~~------------------~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~ 174 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSETGKLEKN------------------VQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRK 174 (365)
T ss_dssp EESSSCCEEEEEEECTTCCEEEE------------------EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred eeecCCceEEEEccCCCCcCcce------------------EeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEE
Confidence 689999999974 332100 0111 135567999999999998887764 679999999
Q ss_pred C-CCcEE--EEec--cCCcceEEEEEcCCCCEEEEEeC-CCcEEEEEcc--Cceeee---ecccCCCCCCCccccccccc
Q psy15549 222 H-KGKNL--GILT--EHKKFVQGVAWDPKNQYVATLSS-DRSLRTYSIQ--SKKVIS---RACRSKLPVDSSHELFDKVV 290 (621)
Q Consensus 222 ~-~~~~~--~~~~--~~~~~v~~l~~sp~~~~l~s~~~-dg~i~iwd~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~ 290 (621)
. +++.. ..+. .|...+..++|+|+|++|++++. ++.|.+|++. +++... .+.......
T Consensus 175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~----------- 243 (365)
T 1jof_A 175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI----------- 243 (365)
T ss_dssp CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC-----------
T ss_pred CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc-----------
Confidence 8 67643 2333 23567899999999999988775 6899999875 454321 111000000
Q ss_pred cccccCCccc------ceeeee-ecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccc
Q psy15549 291 PLFHDDTMKS------FFRRLT-FSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCP 363 (621)
Q Consensus 291 ~~~~~~~~~~------~i~~~~-~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (621)
..+.. .+..++ |+|||++|+++... .+.
T Consensus 244 -----~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~---~~~------------------------------------- 278 (365)
T 1jof_A 244 -----PDRDPETGKGLYRADVCALTFSGKYMFASSRA---NKF------------------------------------- 278 (365)
T ss_dssp -----CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE---SST-------------------------------------
T ss_pred -----CCcccccccccccccEEEECCCCCEEEEECCC---CCC-------------------------------------
Confidence 00011 457899 99999988765410 000
Q ss_pred eeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCC-CCceeEE--EecccccceEEEEEcC---CCCeEEEEeCC-CcE
Q psy15549 364 VLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQ-HASPFAF--IANIHYTKLTDITWSS---DGKVLIASSTD-GYC 436 (621)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~--~~~~h~~~v~~~~~sp---dg~~l~s~s~d-g~i 436 (621)
...+.|.+|++. +++.... ....+...+..++|+| ||++|++++.+ +.|
T Consensus 279 ------------------------~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v 334 (365)
T 1jof_A 279 ------------------------ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWL 334 (365)
T ss_dssp ------------------------TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred ------------------------CCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence 012478899886 5554331 1122445577899999 89999999864 899
Q ss_pred EEEEecCC
Q psy15549 437 SIISFGDN 444 (621)
Q Consensus 437 ~iw~~~~~ 444 (621)
.+|+++..
T Consensus 335 ~v~~~~~~ 342 (365)
T 1jof_A 335 EIYRWKDE 342 (365)
T ss_dssp EEEEEETT
T ss_pred EEEEEchh
Confidence 99999866
No 163
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.83 E-value=5.9e-19 Score=191.33 Aligned_cols=208 Identities=10% Similarity=-0.001 Sum_probs=146.7
Q ss_pred eeecCCCCeEEEeccccccCCcceEEEEe--cCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEE
Q psy15549 8 ISWHNRDPVLSVDIQLKQEKDNCYRIVTG--GADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVN 85 (621)
Q Consensus 8 ~~~~h~~~v~~l~~spd~~~~~~~~l~tg--~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 85 (621)
....|...|..++|++++. +++.. +.++... ||.+..+.... .+..|...+.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~-----~~~~~~~~~~~~~~--------------l~~~~~~~~~~-------~l~~~~~~~~ 71 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEV-----WWVAPRPAEAGRAT--------------LVRRRADGAEE-------SALPAPWNVR 71 (662)
T ss_dssp HHHHTCSCCEEEEEETTEE-----EEEEEETTTTTEEE--------------EEEECTTSCEE-------ESSCTTCCBC
T ss_pred HHhhcCCccceeEEcCCeE-----EEEecCcccCCcEE--------------EEEECCCCCcc-------eeCCCCcccc
Confidence 3456788999999999876 77777 6688888 77764332221 2445555554
Q ss_pred ---------EEEEc--cCCCE-EEEEcCCceEEEEeccC--c-cccccceecccccc-----cCCCeEEEEECCCCCEEE
Q psy15549 86 ---------VVRFS--PNGEL-LASGDDVGKEIWYLTER--E-SGIANVEFASDLSR-----HQKAVNVVRFSPNGELLA 145 (621)
Q Consensus 86 ---------~l~~s--pdg~~-las~~d~~v~iw~~~~~--~-~~~~~~~~~~~~~~-----h~~~V~~i~~sp~g~~l~ 145 (621)
...|+ |||+. |+.+++....||.+... + . . ...+.. |...+..++|+|||+.|+
T Consensus 72 ~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~-----~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~ 145 (662)
T 3azo_A 72 NRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA-----V-PRPLTPVSAVGGGLRWADPVLLPERGEVW 145 (662)
T ss_dssp CCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC-----C-CEECSCCCCSTTCEEEEEEEEETTTTEEE
T ss_pred ccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC-----C-CEeccCCccCCCCccccCcEECCCCCEEE
Confidence 55565 99998 88877555566666543 1 1 1 122233 667889999999999999
Q ss_pred EEeCC----------CcEEEEEccC------CCCCCCCCCCCcccccccccceeeeeeec-CCCCCeEEEEECCCCCEEE
Q psy15549 146 SGDDE----------STIIVWKQKT------DQDLPEFPSSNLDEENVNKEHWIVTKILR-GHLEDVYDISWSPTSTHLI 208 (621)
Q Consensus 146 s~s~d----------g~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~spd~~~l~ 208 (621)
+++.+ ..|++||+.+ +.. ..+. .+...+..++|+|||++|+
T Consensus 146 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------------------~~l~~~~~~~~~~~~~SpDG~~la 203 (662)
T 3azo_A 146 CMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV----------------------RELSDDAHRFVTGPRLSPDGRQAV 203 (662)
T ss_dssp EEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS----------------------EESSCSCSSEECCCEECTTSSEEE
T ss_pred EEEecccCCCCCCceeEEEEEECCCCccccCCce----------------------eEEEecCCCcccCceECCCCCEEE
Confidence 98876 5899999987 332 3334 4556788899999999999
Q ss_pred EEeCC--------CeEEEEECC-CC---cEEEEeccCCcceEEEEEcCCCCEEEEEeCCC--cEEEEEccCceee
Q psy15549 209 SGSVD--------NTAIMWDVH-KG---KNLGILTEHKKFVQGVAWDPKNQYVATLSSDR--SLRTYSIQSKKVI 269 (621)
Q Consensus 209 s~~~d--------g~i~vwd~~-~~---~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg--~i~iwd~~~~~~~ 269 (621)
.++.+ ..|++||+. ++ +.......+...+..++|+|||++++++..++ .|.+||+.+++..
T Consensus 204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~ 278 (662)
T 3azo_A 204 WLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT 278 (662)
T ss_dssp EEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE
T ss_pred EEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee
Confidence 87754 379999998 56 44444445578899999999999777777788 5666666565543
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=8.7e-19 Score=176.80 Aligned_cols=289 Identities=11% Similarity=0.041 Sum_probs=186.6
Q ss_pred cccccCcEEE-----EEEccCCCEEEEEcC-Cc---eEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEE
Q psy15549 77 LSRHQKAVNV-----VRFSPNGELLASGDD-VG---KEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASG 147 (621)
Q Consensus 77 ~~~h~~~V~~-----l~~spdg~~las~~d-~~---v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~ 147 (621)
+..|...+.. .+|||||++|+.+++ ++ +.+|++..+ .......++...+..++|+|+|+.|+++
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-------~~~~lt~~~~~~~~~~~~spdg~~l~~~ 98 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ-------VATQLTEGRGDNTFGGFLSPDDDALFYV 98 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC-------EEEECCCSSCBCSSSCEECTTSSEEEEE
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC-------ceEEeeeCCCCCccceEEcCCCCEEEEE
Confidence 5556655555 889999999998873 33 666676655 3344444555555577899999999999
Q ss_pred eCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEE--EECCCCCEEEEEe--------------
Q psy15549 148 DDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDI--SWSPTSTHLISGS-------------- 211 (621)
Q Consensus 148 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~spd~~~l~s~~-------------- 211 (621)
+.++.|++||+.+++.. .....+...+... .++|++.+++...
T Consensus 99 ~~~~~l~~~d~~~g~~~---------------------~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~ 157 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEEN---------------------VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK 157 (388)
T ss_dssp ETTTEEEEEETTTCCEE---------------------EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred eCCCeEEEEECCCCcce---------------------eeeechhhcccccceeECCCCCeeccccccCcccccccccch
Confidence 99999999999988642 2333444444333 3489999887432
Q ss_pred --------CCCeEEEEECCCCcEEEEeccCCcceEEEEEcC-CCCEEEEEeCC------CcEEEEEccCceeeeecccCC
Q psy15549 212 --------VDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDP-KNQYVATLSSD------RSLRTYSIQSKKVISRACRSK 276 (621)
Q Consensus 212 --------~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~ 276 (621)
.+..|.+||+.+++... +..+...+..++|+| +|+.|+.+..+ ..|.++|+..+... .+...
T Consensus 158 ~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~- 234 (388)
T 3pe7_A 158 FHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTH- 234 (388)
T ss_dssp HHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCC-
T ss_pred hhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeC-
Confidence 34789999999887544 445667789999999 99999877763 36777787654432 22110
Q ss_pred CCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccce
Q psy15549 277 LPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYS 356 (621)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (621)
.....+..++|+|||+.|+..+.. +
T Consensus 235 --------------------~~~~~~~~~~~spdg~~l~~~~~~----~------------------------------- 259 (388)
T 3pe7_A 235 --------------------AEGESCTHEFWVPDGSALVYVSYL----K------------------------------- 259 (388)
T ss_dssp --------------------CTTEEEEEEEECTTSSCEEEEEEE----T-------------------------------
T ss_pred --------------------CCCcccccceECCCCCEEEEEecC----C-------------------------------
Confidence 001235678999999988765510 0
Q ss_pred eeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEe-ccccc---ceEEEEEcCCCCeEEEE--
Q psy15549 357 VAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIA-NIHYT---KLTDITWSSDGKVLIAS-- 430 (621)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~h~~---~v~~~~~spdg~~l~s~-- 430 (621)
+..+..|++||+.+++...... .++.. ....++|+|||+.|+..
T Consensus 260 ------------------------------~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 260 ------------------------------GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp ------------------------------TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred ------------------------------CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence 0012248899998887433221 11100 01224799999988854
Q ss_pred -------eCCCcEEEEEecCCcCCcccCCCCC-----------cccccCCCCCCCCcccC-CCcccHHHhc
Q psy15549 431 -------STDGYCSIISFGDNEIGIPYVPPSG-----------EESKENDPTKGEPVRSE-DKPRSAEQAK 482 (621)
Q Consensus 431 -------s~dg~i~iw~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~s~-~~~~~~~~w~ 482 (621)
..+..|++||+.++++. .+..+.. ......|+|+|+.++.. ..++...+|.
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp -------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred eccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 45668999999988763 3333333 45667899999866644 3445444544
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=1.5e-18 Score=172.17 Aligned_cols=294 Identities=6% Similarity=-0.043 Sum_probs=182.6
Q ss_pred EEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccC-CCeEEEEECCCCCEEE-EEeCCCcEEEEEccCCC
Q psy15549 86 VVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQ-KAVNVVRFSPNGELLA-SGDDESTIIVWKQKTDQ 162 (621)
Q Consensus 86 ~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~-~~V~~i~~sp~g~~l~-s~s~dg~i~vwd~~~~~ 162 (621)
.+++++++.++++++ ++.|.+||...+ +....+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~-------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD-------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT-------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC-------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 356788888888876 888999999876 3344443332 2577899999998665 55578999999998876
Q ss_pred CCCCCCCCCcccccccccceeeeeeec-CC-----CCCeEEEEECCCCCEEEEEeCC------------CeEEEEECCCC
Q psy15549 163 DLPEFPSSNLDEENVNKEHWIVTKILR-GH-----LEDVYDISWSPTSTHLISGSVD------------NTAIMWDVHKG 224 (621)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~v~~i~~spd~~~l~s~~~d------------g~i~vwd~~~~ 224 (621)
.. ..+. .+ ...+.+++|+|||++|++++.+ +.|.+||+.++
T Consensus 77 ~~---------------------~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 135 (349)
T 1jmx_B 77 NT---------------------FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG 135 (349)
T ss_dssp EE---------------------EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred EE---------------------EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc
Confidence 43 1222 12 2336789999999999998865 89999999885
Q ss_pred cE---EEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcc--
Q psy15549 225 KN---LGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMK-- 299 (621)
Q Consensus 225 ~~---~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 299 (621)
+. +..+. +...+.+++|+|+|+ +++++. .|.+||+.+++.+..+......... . ........+......
T Consensus 136 ~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 209 (349)
T 1jmx_B 136 LEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKG-Y-SAPDVLYFWPHQSPRHE 209 (349)
T ss_dssp GGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTT-B-CCCBCCCCCCCCCTTCE
T ss_pred cccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCcc-c-cCccceeeecCCCccee
Confidence 43 33333 334588999999999 655543 4999999998877655322110000 0 000000000000000
Q ss_pred -cceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCcc
Q psy15549 300 -SFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFK 378 (621)
Q Consensus 300 -~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (621)
.....+++++++....... ..
T Consensus 210 ~~~~~~~~~~~d~~~~~~~~-------------~~--------------------------------------------- 231 (349)
T 1jmx_B 210 FSMLYTIARFKDDKQDPATA-------------DL--------------------------------------------- 231 (349)
T ss_dssp EEEEEEEEEC-------CCC-------------EE---------------------------------------------
T ss_pred EEeeeeeeecCCCcCCcccc-------------cc---------------------------------------------
Confidence 0011122222221110000 00
Q ss_pred CCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcC-CCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcc
Q psy15549 379 LPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSS-DGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEE 457 (621)
Q Consensus 379 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~ 457 (621)
...++......+.+.+|+.. .+...+.+++|+| ||++|+++ ++.|.+||+.+++....+... ...
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~ 297 (349)
T 1jmx_B 232 -LYGYLSVDLKTGKTHTQEFA----------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTY 297 (349)
T ss_dssp -EEEEEEEETTTCCEEEEEEE----------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCC
T ss_pred -ceeEEEEeccCCcEEecccc----------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCc
Confidence 00111122234455555432 2455788999999 99999988 889999999998877666543 245
Q ss_pred cccCCCCCCCCcccCCCcccHHHhcccC
Q psy15549 458 SKENDPTKGEPVRSEDKPRSAEQAKGEG 485 (621)
Q Consensus 458 ~~~~~~~~~~~~~s~~~~~~~~~w~~~~ 485 (621)
..+.+++++..++....++.+.+|+...
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred cceEECCCCCEEEEecCCCeEEEEeccc
Confidence 5778999999888778889999999653
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=2.4e-18 Score=188.44 Aligned_cols=151 Identities=12% Similarity=0.149 Sum_probs=113.0
Q ss_pred CcEEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCC-----CeEEEEECCCCCEEEEEeCC------
Q psy15549 82 KAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQK-----AVNVVRFSPNGELLASGDDE------ 150 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-----~V~~i~~sp~g~~l~s~s~d------ 150 (621)
....+++|+|||++|+++ ++.|++|++.++. ....+.+|.. ....++|||||++|++++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~ 88 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ-ENNILVFNAEYGN-------SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH 88 (740)
T ss_dssp CCCCCEEECSSSEEEEEE-TTEEEEEETTTCC-------EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSS
T ss_pred ccccccEECCCCcEEEEc-CCcEEEEECCCCc-------eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEE
Confidence 346689999999999997 8999999998873 2333444442 23458899999999998876
Q ss_pred ---CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Q psy15549 151 ---STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNL 227 (621)
Q Consensus 151 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~ 227 (621)
+.+.+||+.+++.. .+..|...+..++|||||+.||.+. ++.|++|++.+++..
T Consensus 89 ~~~~~~~~~d~~~~~~~----------------------~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 89 SYTASYDIYDLNKRQLI----------------------TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY 145 (740)
T ss_dssp CEEEEEEEEETTTTEEC----------------------CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred ccceEEEEEECCCCcEE----------------------EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE
Confidence 56779999988642 3456777899999999999999885 789999999888755
Q ss_pred EEec-cCCcce-----------------EEEEEcCCCCEEEEEeCCCc-EEEEEc
Q psy15549 228 GILT-EHKKFV-----------------QGVAWDPKNQYVATLSSDRS-LRTYSI 263 (621)
Q Consensus 228 ~~~~-~~~~~v-----------------~~l~~sp~~~~l~s~~~dg~-i~iwd~ 263 (621)
+... ++...+ ..+.|||||++|+.++.|.. +.+|++
T Consensus 146 ~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence 4322 222222 35899999999998876543 666655
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=1.6e-18 Score=175.23 Aligned_cols=291 Identities=11% Similarity=0.062 Sum_probs=179.8
Q ss_pred CeEEEeccccccCCcceEEEEecC-CceEEeeeccCccccccceeEEeccccccccceeeccccccccCc-EEEEEEccC
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGA-DSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKA-VNVVRFSPN 92 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~-dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~spd 92 (621)
.+.+++|+|||+ +|+.... ++...+| +|++.+++... +..+... ...+.|+||
T Consensus 37 ~~~~~~~SpdG~-----~l~~~~~~~g~~~l~------------~~d~~~~~~~~--------l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 37 YFYQKCFTQDGK-----KLLFAGDFDGNRNYY------------LLNLETQQAVQ--------LTEGKGDNTFGGFISTD 91 (396)
T ss_dssp CTTSCCBCTTSC-----EEEEEECTTSSCEEE------------EEETTTTEEEE--------CCCSSCBCTTTCEECTT
T ss_pred eeecCcCCCCCC-----EEEEEEecCCCceEE------------EEECCCCcEEE--------eecCCCCccccceECCC
Confidence 378899999998 7766543 4433333 77776654321 2222223 334789999
Q ss_pred CCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEE-------------------EEECCCCCEEEEE-----
Q psy15549 93 GELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNV-------------------VRFSPNGELLASG----- 147 (621)
Q Consensus 93 g~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~-------------------i~~sp~g~~l~s~----- 147 (621)
|++|+.++ ++.+.+|++..+. .......+...... +.|+|+++.++.+
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLE-------EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred CCEEEEEEcCCcEEEEECCCCC-------cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 99998877 6679999987652 11112222222212 3567777766654
Q ss_pred eCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC-CCCEEEEEeCC------CeEEEEE
Q psy15549 148 DDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP-TSTHLISGSVD------NTAIMWD 220 (621)
Q Consensus 148 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-d~~~l~s~~~d------g~i~vwd 220 (621)
..+..|.+||+.+++. ..+..+...+..+.|+| ++..|+..+.+ ..|.+||
T Consensus 165 ~~~~~l~~~d~~~g~~----------------------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d 222 (396)
T 3c5m_A 165 NPTCRLIKVDIETGEL----------------------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVN 222 (396)
T ss_dssp CCCEEEEEEETTTCCE----------------------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEE
T ss_pred CCcceEEEEECCCCcE----------------------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEE
Confidence 3566899999887653 22334667789999999 88877776643 4688999
Q ss_pred CCCCcEEEEeccC--CcceEEEEEcCCCCEEEEEeCC-----CcEEEEEccCceeeeecccCCCCCCCcccccccccccc
Q psy15549 221 VHKGKNLGILTEH--KKFVQGVAWDPKNQYVATLSSD-----RSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLF 293 (621)
Q Consensus 221 ~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (621)
+..++.. .+..+ ...+..++|+|+|++|+.++.+ +.|++||+.+++.......
T Consensus 223 ~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~------------------- 282 (396)
T 3c5m_A 223 EDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM------------------- 282 (396)
T ss_dssp TTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-------------------
T ss_pred CCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-------------------
Confidence 8766543 33333 2357889999999988777654 4499999988764332110
Q ss_pred ccCCcccceeeeeecC-CCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCC
Q psy15549 294 HDDTMKSFFRRLTFSP-DGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSD 372 (621)
Q Consensus 294 ~~~~~~~~i~~~~~sp-dg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (621)
. ... +.|+| ||+++++++. +..+ ...
T Consensus 283 -----~-~~~-~~~s~~dg~~l~~~~~-----~~p~---~~~-------------------------------------- 309 (396)
T 3c5m_A 283 -----P-PCS-HLMSNFDGSLMVGDGC-----DAPV---DVA-------------------------------------- 309 (396)
T ss_dssp -----C-SEE-EEEECSSSSEEEEEEC-----CC----------------------------------------------
T ss_pred -----C-CCC-CCccCCCCceEEEecC-----Ccce---eec--------------------------------------
Confidence 0 012 78999 9998876541 1000 000
Q ss_pred CCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEeccccc-----------ceEEEEEcCCCCeEEEEeC-CCcEEEEE
Q psy15549 373 DKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYT-----------KLTDITWSSDGKVLIASST-DGYCSIIS 440 (621)
Q Consensus 373 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~-----------~v~~~~~spdg~~l~s~s~-dg~i~iw~ 440 (621)
+++ ......+..|++||+.+++... +.. +.. .+..++|+|||+.|+.++. ++...||.
T Consensus 310 -------~~~-~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 310 -------DAD-SYNIENDPFLYVLNTKAKSAQK-LCK-HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp -------------CCCCCCEEEEEETTTTBCCE-EEE-CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred -------ccc-ccccCCCCcEEEEecccCceEE-ccC-CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 000 0000135689999998877543 322 333 2567899999998887764 56666666
Q ss_pred ec
Q psy15549 441 FG 442 (621)
Q Consensus 441 ~~ 442 (621)
++
T Consensus 380 ~~ 381 (396)
T 3c5m_A 380 AD 381 (396)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.79 E-value=1.2e-16 Score=156.91 Aligned_cols=258 Identities=12% Similarity=0.136 Sum_probs=182.5
Q ss_pred cCcEEEEEEccCCCEEEEEcCC-------------------------ceEEEEeccCccccccceecccc-cccCCCeEE
Q psy15549 81 QKAVNVVRFSPNGELLASGDDV-------------------------GKEIWYLTERESGIANVEFASDL-SRHQKAVNV 134 (621)
Q Consensus 81 ~~~V~~l~~spdg~~las~~d~-------------------------~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~ 134 (621)
-+.+.+++++|+|+++++...+ .|.+|+...+ .....+ .++-.....
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g-------~~~~~~~~~~~~~p~g 95 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA-------EILQSSGKNLFYLPHG 95 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC-------CEEEEECTTTCSSEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC-------eEEeccCCCccCCceE
Confidence 4679999999999999888744 5888887655 222222 234457899
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEccCCC-CCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC-CCCEEEEEe-
Q psy15549 135 VRFSPNGELLASGDDESTIIVWKQKTDQ-DLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP-TSTHLISGS- 211 (621)
Q Consensus 135 i~~sp~g~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-d~~~l~s~~- 211 (621)
++++|+|+++++...++.|++|+..... .+..+..... ...-.++......++++| ++.++++.+
T Consensus 96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~------------~g~~~~~~~~P~~ia~~~~~g~lyv~d~~ 163 (329)
T 3fvz_A 96 LSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ------------PGSDQNHFCQPTDVAVEPSTGAVFVSDGY 163 (329)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB------------CCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred EEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC------------CCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence 9999999988888889999999976542 2211100000 000024455789999999 788888876
Q ss_pred CCCeEEEEECCCCcEEEEeccC----------CcceEEEEEcCC-CCEEEEEeCCCcEEEEEccCceeeeecccCCCCCC
Q psy15549 212 VDNTAIMWDVHKGKNLGILTEH----------KKFVQGVAWDPK-NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVD 280 (621)
Q Consensus 212 ~dg~i~vwd~~~~~~~~~~~~~----------~~~v~~l~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 280 (621)
.++.|++|+ .++..+..+... ......++++|+ +.++++...++.|++|+..+++.+..+...
T Consensus 164 ~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~----- 237 (329)
T 3fvz_A 164 CNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA----- 237 (329)
T ss_dssp SCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-----
T ss_pred CCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-----
Confidence 689999999 577777766422 234789999998 666667777889999999888877766321
Q ss_pred CccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeee
Q psy15549 281 SSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVK 360 (621)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (621)
.....+..++|+| +..++..+
T Consensus 238 ----------------~~~~~~~~~~~~p-g~~~~~~g------------------------------------------ 258 (329)
T 3fvz_A 238 ----------------SFGRNVFAISYIP-GFLFAVNG------------------------------------------ 258 (329)
T ss_dssp ----------------TTTTCEEEEEEET-TEEEEEEC------------------------------------------
T ss_pred ----------------ccCCCcceeeecC-CEEEEeCC------------------------------------------
Confidence 1223456788888 43333221
Q ss_pred ccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEe--cccccceEEEEEcCCCCeEEEEeCCCcEEE
Q psy15549 361 CCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIA--NIHYTKLTDITWSSDGKVLIASSTDGYCSI 438 (621)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~h~~~v~~~~~spdg~~l~s~s~dg~i~i 438 (621)
..+++...+..|++||..+++.+..+. .++...+.+|+++|+|..+++...++.|++
T Consensus 259 ---------------------~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~ 317 (329)
T 3fvz_A 259 ---------------------KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWK 317 (329)
T ss_dssp ---------------------CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEE
T ss_pred ---------------------CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEE
Confidence 111112245789999999999888763 246677999999999988888889999999
Q ss_pred EEecC
Q psy15549 439 ISFGD 443 (621)
Q Consensus 439 w~~~~ 443 (621)
|++..
T Consensus 318 ~~~~~ 322 (329)
T 3fvz_A 318 FTLTE 322 (329)
T ss_dssp EEEEE
T ss_pred EeCCc
Confidence 99875
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.79 E-value=1.9e-17 Score=164.45 Aligned_cols=299 Identities=12% Similarity=0.048 Sum_probs=187.0
Q ss_pred CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe----------CCCcEEEEEccCCCCCCCCCCC
Q psy15549 101 DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD----------DESTIIVWKQKTDQDLPEFPSS 170 (621)
Q Consensus 101 d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~ 170 (621)
++.|.+||...+ +....+..+..+ .++|+|+|++|+++. .++.|.+||+.+.+.+..+
T Consensus 30 d~~v~v~D~~t~-------~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i--- 97 (361)
T 2oiz_A 30 ESRVHVYDYTNG-------KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI--- 97 (361)
T ss_dssp GCEEEEEETTTC-------CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE---
T ss_pred cCeEEEEECCCC-------eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEE---
Confidence 568899997765 334455555444 899999999999886 3668999999877654222
Q ss_pred Ccccccccccceeeeeeec---CCCCCeEEEEECCCCCEEEEEeC--CCeEEEEECCCCcEEEE-eccCCcceEEEEEcC
Q psy15549 171 NLDEENVNKEHWIVTKILR---GHLEDVYDISWSPTSTHLISGSV--DNTAIMWDVHKGKNLGI-LTEHKKFVQGVAWDP 244 (621)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~---~~~~~v~~i~~spd~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~sp 244 (621)
.... .+......++|+|||++|+++.. ++.|.+||+.+++.+.. +.. .+ ...+.+.|
T Consensus 98 ---------------~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p 160 (361)
T 2oiz_A 98 ---------------SLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQP 160 (361)
T ss_dssp ---------------EECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECT
T ss_pred ---------------EcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcC
Confidence 1110 12345678999999999998874 57999999999988877 543 22 23356778
Q ss_pred CC-CEEEEEeCCCcEEEEEccC-ceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecccccc
Q psy15549 245 KN-QYVATLSSDRSLRTYSIQS-KKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLE 322 (621)
Q Consensus 245 ~~-~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~ 322 (621)
++ ..+++.+.||.+.+|++.. ++........ . .+.... ....+.+++++..++..+
T Consensus 161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~--~-------------~~~~~~---~~~~~~~~~~g~~~~~~~---- 218 (361)
T 2oiz_A 161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSK--Q-------------MFSVKD---DPIFIAPALDKDKAHFVS---- 218 (361)
T ss_dssp TSSSEEEEEETTSSEEEEEECTTSSEEEEEECC--C-------------CSCTTT---SCBCSCCEECSSEEEEEB----
T ss_pred CCCeeEEEECCCCcEEEEEECCCCcEeeecccc--c-------------eEcCCC---CceEEEecccCCEEEEEe----
Confidence 76 6778889999999999865 4443221100 0 000000 012334466666666555
Q ss_pred CCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCC-CCCccCCCcEEEEEEc-----------C
Q psy15549 323 NSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDD-KPLFKLPYRIVIAVAT-----------E 390 (621)
Q Consensus 323 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~-----------d 390 (621)
.++.+.+++....... ......-.........+.| .+. ...+.++++.++++.. .
T Consensus 219 -~~~~v~v~d~~~~~~~-----~~~~~~~~~~~~~~~~~~p-------~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~ 285 (361)
T 2oiz_A 219 -YYGNVYSADFSGDEVK-----VDGPWSLLNDEDKAKNWVP-------GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA 285 (361)
T ss_dssp -TTSEEEEEECSSSSCE-----EEEEEESCCHHHHHTTCEE-------CCSSCEEEETTTTEEEEEEESSCCTTCTTCCC
T ss_pred -CCCeEEEEEecCCCce-----ecccccccCcccccccccc-------CCeeEEEEecCCCeEEEEEccCCCcccccCCC
Confidence 4555666654210000 0000000000000000111 000 1123335566666543 3
Q ss_pred CcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCC--cCCcccCCCCCcccccCCCCCCC
Q psy15549 391 NNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDN--EIGIPYVPPSGEESKENDPTKGE 467 (621)
Q Consensus 391 g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 467 (621)
+.|.+||+.+++.+..+.. +. +.+++|+|||++|++++. +.|.+||..++ +.+..+.........+.++|+|.
T Consensus 286 ~~v~viD~~t~~~v~~i~~-~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 286 AEIWVMDTKTKQRVARIPG-RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SEEEEEETTTTEEEEEEEC-TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ceEEEEECCCCcEEEEEec-CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 4899999999999998865 43 899999999999998887 99999999999 88777655555556667777764
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=3.6e-17 Score=163.20 Aligned_cols=250 Identities=9% Similarity=0.049 Sum_probs=163.5
Q ss_pred CCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEec-cccccccceeeccccccccCcEEEEEEcc
Q psy15549 13 RDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLT-ERESGIANVEFASDLSRHQKAVNVVRFSP 91 (621)
Q Consensus 13 ~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~-~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 91 (621)
...+..++|+||++ +|++++.+ .|. +|++. +++.... .....+ +.+.+++|+|
T Consensus 39 ~~~~~~~a~spdg~-----~l~~~~~~-~v~--------------~~~~~~~g~~~~~-----~~~~~~-g~~~~~~~sp 92 (365)
T 1jof_A 39 DEPISWMTFDHERK-----NIYGAAMK-KWS--------------SFAVKSPTEIVHE-----ASHPIG-GHPRANDADT 92 (365)
T ss_dssp TCCCSEEEECTTSS-----EEEEEEBT-EEE--------------EEEEEETTEEEEE-----EEEECC-SSGGGGCTTS
T ss_pred CCCCcEEEECCCCC-----EEEEEccc-eEE--------------EEEECCCCCEEEe-----eEeecC-CCCccEEECC
Confidence 34688999999998 89888887 788 88876 4432110 011111 2355689999
Q ss_pred CCCE--EEEE--------------cCCceEEEEeccCccccccceeccccc-ccCCCeEEEEECCCCCEEEEEeC-CCcE
Q psy15549 92 NGEL--LASG--------------DDVGKEIWYLTERESGIANVEFASDLS-RHQKAVNVVRFSPNGELLASGDD-ESTI 153 (621)
Q Consensus 92 dg~~--las~--------------~d~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~i~~sp~g~~l~s~s~-dg~i 153 (621)
||++ ++++ .++.+.+|++...+... ..+..+. .+...+.+++|+|+|++|+++.. ++.|
T Consensus 93 dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v 169 (365)
T 1jof_A 93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE---KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKL 169 (365)
T ss_dssp CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE---EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc---ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEE
Confidence 9994 4444 36679999997432110 1111111 24567899999999998887764 6799
Q ss_pred EEEEcc-CCCCCCCCCCCCcccccccccceeeeeeec--CCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECC--CCcEE
Q psy15549 154 IVWKQK-TDQDLPEFPSSNLDEENVNKEHWIVTKILR--GHLEDVYDISWSPTSTHLISGSV-DNTAIMWDVH--KGKNL 227 (621)
Q Consensus 154 ~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~i~~spd~~~l~s~~~-dg~i~vwd~~--~~~~~ 227 (621)
++|++. +++.. ....+. .|...+..++|+|||++|++++. ++.|.+|++. +++..
T Consensus 170 ~~~~~~~~g~~~-------------------~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 230 (365)
T 1jof_A 170 WTHRKLASGEVE-------------------LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV 230 (365)
T ss_dssp EEEEECTTSCEE-------------------EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEECCCCCEE-------------------EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence 999998 55421 011222 24567999999999999988775 6899999875 46542
Q ss_pred ---EEe---cc----CCc------ceEEEE-EcCCCCEEEEEeCCC------cEEEEEcc-CceeeeecccCCCCCCCcc
Q psy15549 228 ---GIL---TE----HKK------FVQGVA-WDPKNQYVATLSSDR------SLRTYSIQ-SKKVISRACRSKLPVDSSH 283 (621)
Q Consensus 228 ---~~~---~~----~~~------~v~~l~-~sp~~~~l~s~~~dg------~i~iwd~~-~~~~~~~~~~~~~~~~~~~ 283 (621)
..+ .. |.. .+..++ |+|||++|+++..+. .|.+|++. +++........
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~-------- 302 (365)
T 1jof_A 231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS-------- 302 (365)
T ss_dssp EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE--------
T ss_pred EccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee--------
Confidence 122 11 122 578999 999999988776432 89999996 55543211000
Q ss_pred ccccccccccccCCcccceeeeeecC---CCCeEEeccccccCCCCCCcceeee
Q psy15549 284 ELFDKVVPLFHDDTMKSFFRRLTFSP---DGQLLIAPSGCLENSDSTRKPISVT 334 (621)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~i~~~~~sp---dg~~l~~~s~~~~~~d~~i~~~~~~ 334 (621)
.........++|+| ||++|++++. .++.+.+|++.
T Consensus 303 ------------~~~~~~~~~~a~sp~~~dg~~l~v~~~----~~~~v~v~~~~ 340 (365)
T 1jof_A 303 ------------PTPTSGGHSNAVSPCPWSDEWMAITDD----QEGWLEIYRWK 340 (365)
T ss_dssp ------------ECSSCCTTCCCEEECTTCTTEEEEECS----SSCEEEEEEEE
T ss_pred ------------ecCCCCcccceecCCCcCCCEEEEEEc----CCCeEEEEEEc
Confidence 00111236789999 8999998872 34788999875
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=1.1e-17 Score=169.11 Aligned_cols=269 Identities=12% Similarity=0.058 Sum_probs=172.3
Q ss_pred CcEEEEEEccCCCEEEEEcC--C--ceEEEEeccCccccccceecccccccCCC-eEEEEECCCCCEEEEEeCCCcEEEE
Q psy15549 82 KAVNVVRFSPNGELLASGDD--V--GKEIWYLTERESGIANVEFASDLSRHQKA-VNVVRFSPNGELLASGDDESTIIVW 156 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~d--~--~v~iw~~~~~~~~~~~~~~~~~~~~h~~~-V~~i~~sp~g~~l~s~s~dg~i~vw 156 (621)
..+.+++|||||++|+...+ + .+.+|++..+ .... +..+... ...+.|+|+|++|+.++.++.|++|
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~-------~~~~-l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~ 107 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ-------QAVQ-LTEGKGDNTFGGFISTDERAFFYVKNELNLMKV 107 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT-------EEEE-CCCSSCBCTTTCEECTTSSEEEEEETTTEEEEE
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCC-------cEEE-eecCCCCccccceECCCCCEEEEEEcCCcEEEE
Confidence 34778899999999887752 2 4666676654 2222 2222223 3347899999999999999999999
Q ss_pred EccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEE-------------------EEECCCCCEEEEE-----eC
Q psy15549 157 KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYD-------------------ISWSPTSTHLISG-----SV 212 (621)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------i~~spd~~~l~s~-----~~ 212 (621)
|+.+++... ....+...... +.|+|+++.++.+ ..
T Consensus 108 d~~~~~~~~---------------------~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 108 DLETLEEQV---------------------IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp ETTTCCEEE---------------------EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred ECCCCCcEE---------------------EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence 998876321 11111111111 3578888877654 35
Q ss_pred CCeEEEEECCCCcEEEEeccCCcceEEEEEcC-CCCEEEEEeCC------CcEEEEEccCceeeeecccCCCCCCCcccc
Q psy15549 213 DNTAIMWDVHKGKNLGILTEHKKFVQGVAWDP-KNQYVATLSSD------RSLRTYSIQSKKVISRACRSKLPVDSSHEL 285 (621)
Q Consensus 213 dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 285 (621)
+..|++||+.+++..... .+...+..+.|+| ++..|+.++.+ ..|.+||+..++...... .
T Consensus 167 ~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~---------- 234 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-H---------- 234 (396)
T ss_dssp CEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-C----------
T ss_pred cceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-c----------
Confidence 678999999988765544 4667789999999 78877776653 358888876554222111 0
Q ss_pred ccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeecccee
Q psy15549 286 FDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVL 365 (621)
Q Consensus 286 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (621)
.....+..++|+|||++|+.++. +.
T Consensus 235 -----------~~~~~~~~~~~spdg~~l~~~~~-----~~--------------------------------------- 259 (396)
T 3c5m_A 235 -----------AEGESCTHEFWIPDGSAMAYVSY-----FK--------------------------------------- 259 (396)
T ss_dssp -----------CTTEEEEEEEECTTSSCEEEEEE-----ET---------------------------------------
T ss_pred -----------CCCccccceEECCCCCEEEEEec-----CC---------------------------------------
Confidence 00123577899999998877551 00
Q ss_pred eecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcC-CCCeEEEEe-------------
Q psy15549 366 FELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSS-DGKVLIASS------------- 431 (621)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~s------------- 431 (621)
. ...+.|++||+.+++....... . ... ++|+| ||++|++++
T Consensus 260 ----------------~-----~~~~~l~~~d~~~g~~~~l~~~-~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~ 314 (396)
T 3c5m_A 260 ----------------G-----QTDRVIYKANPETLENEEVMVM-P--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSY 314 (396)
T ss_dssp ----------------T-----TCCEEEEEECTTTCCEEEEEEC-C--SEE-EEEECSSSSEEEEEECCC----------
T ss_pred ----------------C-----CccceEEEEECCCCCeEEeeeC-C--CCC-CCccCCCCceEEEecCCcceeecccccc
Confidence 0 0124589999988865443311 1 233 89999 999888765
Q ss_pred ---CCCcEEEEEecCCcCCcccCCCCC-----------cccccCCCCCCCCcccC
Q psy15549 432 ---TDGYCSIISFGDNEIGIPYVPPSG-----------EESKENDPTKGEPVRSE 472 (621)
Q Consensus 432 ---~dg~i~iw~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~s~ 472 (621)
.++.|++||+.+++.. .+..+.. ......++++|+.++..
T Consensus 315 ~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 368 (396)
T 3c5m_A 315 NIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFT 368 (396)
T ss_dssp CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred ccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEE
Confidence 3478999999888753 3333322 13445678888766544
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=4.1e-17 Score=176.82 Aligned_cols=268 Identities=11% Similarity=0.047 Sum_probs=175.9
Q ss_pred ccccccCcEEEEEEccCCCEEEEE--c-CCceEEEEeccCccccccceecccccccCCCeE---------EEEEC--CCC
Q psy15549 76 DLSRHQKAVNVVRFSPNGELLASG--D-DVGKEIWYLTERESGIANVEFASDLSRHQKAVN---------VVRFS--PNG 141 (621)
Q Consensus 76 ~~~~h~~~V~~l~~spdg~~las~--~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~---------~i~~s--p~g 141 (621)
.+.+|...|..++|++++.+++.. + ++...||....++ ....+..|...+. .+.|+ |||
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg 90 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG-------AEESALPAPWNVRNRVFEYSGFPWAGVPRPAG 90 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS-------CEEESSCTTCCBCCCGGGTCCCCEEEECCSSS
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC-------CcceeCCCCccccccccccCCccceeeeecCC
Confidence 467899999999999887777776 3 5668899874432 2334445555555 56565 999
Q ss_pred CE-EEEEeC-CCcEEEEEcc--C-CCCCCCCCCCCcccccccccceeeeeeecC-----CCCCeEEEEECCCCCEEEEEe
Q psy15549 142 EL-LASGDD-ESTIIVWKQK--T-DQDLPEFPSSNLDEENVNKEHWIVTKILRG-----HLEDVYDISWSPTSTHLISGS 211 (621)
Q Consensus 142 ~~-l~s~s~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~i~~spd~~~l~s~~ 211 (621)
+. |+.++. +..|.+|++. . +.. ..+.. |...+..++|+|||+.|++++
T Consensus 91 ~~~la~~~~~~~~l~~~~~~~~g~~~~----------------------~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~ 148 (662)
T 3azo_A 91 GPLLVFTHFGDQRLYAFEPDAPGGAVP----------------------RPLTPVSAVGGGLRWADPVLLPERGEVWCMA 148 (662)
T ss_dssp SCEEEEEBTTTCCEEEECTTSTTCCCC----------------------EECSCCCCSTTCEEEEEEEEETTTTEEEEEE
T ss_pred CeEEEEEECCCCeEEEEcCCCCCCCCC----------------------EeccCCccCCCCccccCcEECCCCCEEEEEE
Confidence 98 776654 5566666665 2 321 22333 566789999999999999988
Q ss_pred CC----------CeEEEEECCC------CcEEEEec-cCCcceEEEEEcCCCCEEEEEeCCC--------cEEEEEcc-C
Q psy15549 212 VD----------NTAIMWDVHK------GKNLGILT-EHKKFVQGVAWDPKNQYVATLSSDR--------SLRTYSIQ-S 265 (621)
Q Consensus 212 ~d----------g~i~vwd~~~------~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~~~dg--------~i~iwd~~-~ 265 (621)
.+ ..|++||+.+ ++. ..+. .+...+..++|+|||++|+.++.++ .|++||+. +
T Consensus 149 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 149 EEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp EEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred ecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 76 5899999987 554 4555 5667788899999999999887553 79999998 5
Q ss_pred ce--eeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccC
Q psy15549 266 KK--VISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLN 343 (621)
Q Consensus 266 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~ 343 (621)
+. ....+.. .+...+..++|+|||++++++. .++..
T Consensus 228 g~~~~~~~l~~----------------------~~~~~~~~~~~spdg~l~~~~~-----~~~~~--------------- 265 (662)
T 3azo_A 228 GRFADTRTLLG----------------------GPEEAIAQAEWAPDGSLIVATD-----RTGWW--------------- 265 (662)
T ss_dssp SCEEEEEEEEE----------------------ETTBCEEEEEECTTSCEEEEEC-----TTSSC---------------
T ss_pred CcccccEEeCC----------------------CCCceEcceEECCCCeEEEEEC-----CCCCe---------------
Confidence 61 2222211 1123467899999999554443 22211
Q ss_pred CCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccc--------e
Q psy15549 344 KPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTK--------L 415 (621)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~--------v 415 (621)
.|++||..+++..... ..+... +
T Consensus 266 ------------------------------------------------~l~~~~~~~~~~~~l~-~~~~~~~~p~w~~~~ 296 (662)
T 3azo_A 266 ------------------------------------------------NLHRVDPATGAATQLC-RREEEFAGPLWTPGM 296 (662)
T ss_dssp ------------------------------------------------EEEEECTTTCCEEESS-CCSSBSSCCCCSTTC
T ss_pred ------------------------------------------------EEEEEECCCCceeecc-cccccccCccccccC
Confidence 4555555444432222 222211 5
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEEec--CCcCCcccCCCCCcccccCCCCCCC
Q psy15549 416 TDITWSSDGKVLIASSTDGYCSIISFG--DNEIGIPYVPPSGEESKENDPTKGE 467 (621)
Q Consensus 416 ~~~~~spdg~~l~s~s~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (621)
..++|+|+++++++++. +.++||.++ +++ ...+..+...+..+. ++++.
T Consensus 297 ~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~-s~~~~ 347 (662)
T 3azo_A 297 RWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATL-TVSGT 347 (662)
T ss_dssp CSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEE-EEETT
T ss_pred ceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEE-ecCCC
Confidence 67899999999999988 999999554 454 455655554444331 44444
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=4.8e-15 Score=142.40 Aligned_cols=242 Identities=14% Similarity=0.235 Sum_probs=167.8
Q ss_pred ccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccc------cccCCCeEEEEE-CCCCCEEEEEeC
Q psy15549 78 SRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDL------SRHQKAVNVVRF-SPNGELLASGDD 149 (621)
Q Consensus 78 ~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~------~~h~~~V~~i~~-sp~g~~l~s~s~ 149 (621)
.++-..+.+++++++|+++++.. ++.|.+|+.... ....+ .+|...+..+++ .+++.++++...
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~--------~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~ 97 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR--------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS 97 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC--------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCc--------EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC
Confidence 45667899999999999888866 778999987632 11112 234567899999 567776666643
Q ss_pred -CCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeee-cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Q psy15549 150 -ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL-RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNL 227 (621)
Q Consensus 150 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~ 227 (621)
++.|.+|| .+++.+ ..+ ..+...+.+++++|+|+++++...++.|.+||. +++.+
T Consensus 98 ~~~~i~~~d-~~g~~~---------------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 154 (286)
T 1q7f_A 98 PTHQIQIYN-QYGQFV---------------------RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVL 154 (286)
T ss_dssp GGCEEEEEC-TTSCEE---------------------EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEE
T ss_pred CCCEEEEEC-CCCcEE---------------------EEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEE
Confidence 78999999 444422 222 234457899999999998888777899999996 46666
Q ss_pred EEec--cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeee
Q psy15549 228 GILT--EHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRL 305 (621)
Q Consensus 228 ~~~~--~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 305 (621)
..+. .+...+.+++++|+|+++++...++.|++||.. ++.+..+... .....+..+
T Consensus 155 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~---------------------g~~~~p~~i 212 (286)
T 1q7f_A 155 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGE---------------------GITNYPIGV 212 (286)
T ss_dssp EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCT---------------------TTSCSEEEE
T ss_pred EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccC---------------------CccCCCcEE
Confidence 5553 344568999999999987777778999999974 4444433211 001234678
Q ss_pred eecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEE
Q psy15549 306 TFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVI 385 (621)
Q Consensus 306 ~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 385 (621)
+++++|+++++..
T Consensus 213 ~~d~~G~l~v~~~------------------------------------------------------------------- 225 (286)
T 1q7f_A 213 GINSNGEILIADN------------------------------------------------------------------- 225 (286)
T ss_dssp EECTTCCEEEEEC-------------------------------------------------------------------
T ss_pred EECCCCCEEEEeC-------------------------------------------------------------------
Confidence 8888887665543
Q ss_pred EEEcCC-cEEEEeCCCCceeEEEecc-cccceEEEEEcCCCCeEEEEeCCCcEEEEEecCC
Q psy15549 386 AVATEN-NILLYDTQHASPFAFIANI-HYTKLTDITWSSDGKVLIASSTDGYCSIISFGDN 444 (621)
Q Consensus 386 ~~~~dg-~i~iwd~~~~~~~~~~~~~-h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~ 444 (621)
.++ .|.+||. +++.+..+... ....+.+++++|+|+++++ +.|+.|++|++...
T Consensus 226 ---~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 226 ---HNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ---SSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ---CCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 333 7888884 45555555331 2234789999999987776 67999999998653
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=2.9e-15 Score=147.46 Aligned_cols=194 Identities=10% Similarity=0.082 Sum_probs=137.7
Q ss_pred CCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCC
Q psy15549 14 DPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNG 93 (621)
Q Consensus 14 ~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 93 (621)
..|.+++|++++. .++..+.++.++ .|. ... ...+..+...+.+++|+++|
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~~~~~--------------~~~---~~~-------~~~~~~~~~~~~~~~~~~~g 56 (333)
T 2dg1_A 6 QDLPTLFYSGKSN-----SAVPIISESELQ--------------TIT---AEP-------WLEISKKGLQLEGLNFDRQG 56 (333)
T ss_dssp CCCCBCCSCGGGG-----CSSCCCCGGGSC--------------EEE---CEE-------EEEEESSCCCEEEEEECTTS
T ss_pred cccceeeecCCcc-----ceeEEeecccCc--------------ccc---cce-------eEEEeccCccccCcEECCCC
Confidence 4688999999997 777778888888 772 111 12245566778999999999
Q ss_pred CEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCC----CcEEEEEccCCCCCCCCC
Q psy15549 94 ELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE----STIIVWKQKTDQDLPEFP 168 (621)
Q Consensus 94 ~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~d----g~i~vwd~~~~~~~~~~~ 168 (621)
++++++. ++.|.+|+...+. .......+...+.+++|+++|+++++...+ +.|.+||..++...
T Consensus 57 ~l~~~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~---- 125 (333)
T 2dg1_A 57 QLFLLDVFEGNIFKINPETKE-------IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ---- 125 (333)
T ss_dssp CEEEEETTTCEEEEECTTTCC-------EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE----
T ss_pred CEEEEECCCCEEEEEeCCCCc-------EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE----
Confidence 9887776 7779999877652 222222456789999999999988877766 68999998776531
Q ss_pred CCCcccccccccceeeeeee--cCCCCCeEEEEECCCCCEEEEEeC------CCeEEEEECCCCcEEEEeccCCcceEEE
Q psy15549 169 SSNLDEENVNKEHWIVTKIL--RGHLEDVYDISWSPTSTHLISGSV------DNTAIMWDVHKGKNLGILTEHKKFVQGV 240 (621)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~spd~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~l 240 (621)
..+ ..+...+.+++++|+|+++++... .+.|..||..+++... +..+...+..+
T Consensus 126 -----------------~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i 187 (333)
T 2dg1_A 126 -----------------DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGI 187 (333)
T ss_dssp -----------------EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEE
T ss_pred -----------------EEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccce
Confidence 111 124467899999999987776653 3567777765554433 22333457889
Q ss_pred EEcCCCCEEEEE-eCCCcEEEEEccC
Q psy15549 241 AWDPKNQYVATL-SSDRSLRTYSIQS 265 (621)
Q Consensus 241 ~~sp~~~~l~s~-~~dg~i~iwd~~~ 265 (621)
+|+|++++|+.+ +.++.|.+||+.+
T Consensus 188 ~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 188 ALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCeEEEEEecC
Confidence 999999876554 4578999999864
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=1.2e-15 Score=151.07 Aligned_cols=259 Identities=12% Similarity=0.097 Sum_probs=162.3
Q ss_pred CCeEEEeccccccCCcceEEEEec---------CCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcE
Q psy15549 14 DPVLSVDIQLKQEKDNCYRIVTGG---------ADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAV 84 (621)
Q Consensus 14 ~~v~~l~~spd~~~~~~~~l~tg~---------~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V 84 (621)
..+..+++ ||+ +++... .++.|. +|++.++... . + ..+
T Consensus 15 ~~~~~~~~--dG~-----~i~~~~~~~~~~~~~~~~~l~--------------~~d~~~~~~~-~-------l----~~~ 61 (347)
T 2gop_A 15 AYLSDPRT--KGE-----LVAYVLTKANLKDNKYENTIV--------------IENLKNNARR-F-------I----ENA 61 (347)
T ss_dssp CEEEEEEE--ETT-----EEEEEEEEEETTTTEEEEEEE--------------EEETTTCCEE-E-------E----ESC
T ss_pred EEcccceE--CCc-----EEEEEEeecCcccCCccceEE--------------EEeCCCCceE-E-------c----ccC
Confidence 46788888 887 776642 134455 8887765421 1 2 468
Q ss_pred EEEEEccCCCEEEEEc-C---Cc--eEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCC--------
Q psy15549 85 NVVRFSPNGELLASGD-D---VG--KEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE-------- 150 (621)
Q Consensus 85 ~~l~~spdg~~las~~-d---~~--v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~d-------- 150 (621)
.+++|||||++|+.++ + +. +.+|++..+ .... +..+.. +..++|+|+|+.|+.++.+
T Consensus 62 ~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g-------~~~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~ 132 (347)
T 2gop_A 62 TMPRISPDGKKIAFMRANEEKKVSEIWVADLETL-------SSKK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFI 132 (347)
T ss_dssp EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT-------EEEE-EEEESE-EEEEEECTTSSEEEEEEECCCC-----
T ss_pred CCeEECCCCCEEEEEEeccCCCcceEEEEECCCC-------ceEE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcE
Confidence 8999999999999876 2 33 455555543 2222 222333 8999999999998887642
Q ss_pred -------------------CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe
Q psy15549 151 -------------------STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS 211 (621)
Q Consensus 151 -------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~ 211 (621)
..|.+||+.+++.+ ..+.. . .+..+.|+||| +++++.
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~---------------------~~l~~-~-~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI---------------------EEFEK-P-RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp ----CCCC---------CEEEEEEEETTTTEEE---------------------EEEEE-E-TTCEEEEETTE-EEEEEE
T ss_pred EEcccceeecCcccccCccceEEEEECCCCeEE---------------------eeecC-C-CcccccCCCCe-EEEEEe
Confidence 46888898776531 12222 2 67899999999 777776
Q ss_pred CCC-------eEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCC--------cEEEEEccCceeeeecccCC
Q psy15549 212 VDN-------TAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDR--------SLRTYSIQSKKVISRACRSK 276 (621)
Q Consensus 212 ~dg-------~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~ 276 (621)
.++ ...||.+.+++. ..+..+ ..+..+ +|+|++|+.++.++ .|.+|| +++......
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--- 259 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD--- 259 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST---
T ss_pred cccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc---
Confidence 542 344554445543 444444 555444 99999988877543 577777 443322111
Q ss_pred CCCCCccccccccccccccCCcccceee-eeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccc
Q psy15549 277 LPVDSSHELFDKVVPLFHDDTMKSFFRR-LTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYY 355 (621)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (621)
.+...+.. +.|+ |+ ++++
T Consensus 260 --------------------~~~~~~~~~~~~s-dg-~~~~--------------------------------------- 278 (347)
T 2gop_A 260 --------------------EVDRGVGQAKIKD-GK-VYFT--------------------------------------- 278 (347)
T ss_dssp --------------------TCCSEEEEEEEET-TE-EEEE---------------------------------------
T ss_pred --------------------cCCcccCCccEEc-Cc-EEEE---------------------------------------
Confidence 11223443 6676 65 4333
Q ss_pred eeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCc
Q psy15549 356 SVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGY 435 (621)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~ 435 (621)
++.++.++|| +.+++... +.. +...|.+++|+| .++++++.++.
T Consensus 279 -------------------------------~~~~~~~~l~-~~~g~~~~-~~~-~~~~v~~~~~s~--~~~~~~~~~~~ 322 (347)
T 2gop_A 279 -------------------------------LFEEGSVNLY-IWDGEIKP-IAK-GRHWIMGFDVDE--IVVYLKETATR 322 (347)
T ss_dssp -------------------------------EEETTEEEEE-EESSSEEE-EEC-SSSEEEEEEESS--SEEEEEECSSS
T ss_pred -------------------------------EecCCcEEEE-EcCCceEE-Eec-CCCeEEeeeeeC--cEEEEEcCCCC
Confidence 3356677777 66555433 323 467899999999 67777777776
Q ss_pred E-EEEEecCCc
Q psy15549 436 C-SIISFGDNE 445 (621)
Q Consensus 436 i-~iw~~~~~~ 445 (621)
. .||.++ ++
T Consensus 323 ~~~l~~~~-g~ 332 (347)
T 2gop_A 323 LRELFTWD-GE 332 (347)
T ss_dssp CCEEEEES-SS
T ss_pred hHHheEeC-Cc
Confidence 5 888887 54
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=3.3e-15 Score=146.52 Aligned_cols=268 Identities=11% Similarity=0.037 Sum_probs=175.1
Q ss_pred CCCeEEEeccccccCCcceEEEEecCCceEEeeeccCcccc----------ccceeEEeccccccccceeeccccccccC
Q psy15549 13 RDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRL----------KTGKIWYLTERESGIANVEFASDLSRHQK 82 (621)
Q Consensus 13 ~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~----------~~~~iw~~~~~~~~~~~~~~~~~~~~h~~ 82 (621)
-+.+.+|+++|+|+ ++++...++.+.++........ ..+.+||..++..... .-.++-.
T Consensus 23 l~~v~~va~d~~G~-----l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------~~~~~~~ 91 (329)
T 3fvz_A 23 PGQVSGVALDSKNN-----LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------SGKNLFY 91 (329)
T ss_dssp CSCEEEEEECTTCC-----EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------ECTTTCS
T ss_pred cCCceEEEECCCCC-----EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------cCCCccC
Confidence 35799999999998 8888888854433222211111 1233777665543211 1124456
Q ss_pred cEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccc---------cccCCCeEEEEECC-CCCEEEEEe-CC
Q psy15549 83 AVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDL---------SRHQKAVNVVRFSP-NGELLASGD-DE 150 (621)
Q Consensus 83 ~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~---------~~h~~~V~~i~~sp-~g~~l~s~s-~d 150 (621)
....++++|+|+++++.. ++.|++|+..... ..+..+ .++......++++| ++.++++.+ .+
T Consensus 92 ~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~ 165 (329)
T 3fvz_A 92 LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN 165 (329)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEECTTCSS------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC
T ss_pred CceEEEECCCCCEEEEECCCCEEEEEeCCCCe------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC
Confidence 789999999999888776 6788999875431 012222 23445789999999 788888876 68
Q ss_pred CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEE
Q psy15549 151 STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT-STHLISGSVDNTAIMWDVHKGKNLGI 229 (621)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~ 229 (621)
+.|++|+. ++..+..+...... .....++-.....++++|+ +.++++...++.|++|+..+++.+..
T Consensus 166 ~~I~~~~~-~g~~~~~~~~~g~~-----------~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~ 233 (329)
T 3fvz_A 166 SRIVQFSP-SGKFVTQWGEESSG-----------SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE 233 (329)
T ss_dssp CEEEEECT-TSCEEEEECEECCS-----------SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CeEEEEcC-CCCEEEEeccCCCC-----------CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 99999994 34332111000000 0000123345889999998 67777777789999999988998888
Q ss_pred ec--cCCcceEEEEEcCCCCEEEEE-------eCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCccc
Q psy15549 230 LT--EHKKFVQGVAWDPKNQYVATL-------SSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKS 300 (621)
Q Consensus 230 ~~--~~~~~v~~l~~sp~~~~l~s~-------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (621)
+. .+...+.+++|+| +..+++. ..+..|++|++.+++.+..+... .....
T Consensus 234 ~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~--------------------~~~~~ 292 (329)
T 3fvz_A 234 IKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV--------------------RKHFD 292 (329)
T ss_dssp ECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS--------------------SSCCS
T ss_pred EeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC--------------------CCccC
Confidence 74 4556788999999 4333333 33458999999999887765311 11223
Q ss_pred ceeeeeecCCCCeEEeccccccCCCCCCcceeeee
Q psy15549 301 FFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTH 335 (621)
Q Consensus 301 ~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~ 335 (621)
...+++++|+|..+++.. .++.|+.|++..
T Consensus 293 ~p~~ia~~~dG~lyvad~-----~~~~I~~~~~~~ 322 (329)
T 3fvz_A 293 MPHDIVASEDGTVYIGDA-----HTNTVWKFTLTE 322 (329)
T ss_dssp SEEEEEECTTSEEEEEES-----SSCCEEEEEEEE
T ss_pred CeeEEEECCCCCEEEEEC-----CCCEEEEEeCCc
Confidence 457899999997666665 678888888753
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=6e-14 Score=146.24 Aligned_cols=340 Identities=15% Similarity=0.085 Sum_probs=207.9
Q ss_pred EEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCCEEEEEc-CCceEEEEec
Q psy15549 32 RIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLT 110 (621)
Q Consensus 32 ~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~ 110 (621)
++++...++.|. ++|..+++.... +. ....+..+.|+|||++|++++ ++.|.+||+.
T Consensus 169 ~~V~~~~~~~V~--------------viD~~t~~v~~~-------i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 169 FSVTLRDAGQIA--------------LIDGSTYEIKTV-------LD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp EEEEETTTTEEE--------------EEETTTCCEEEE-------EE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred EEEEeCCCCeEE--------------EEECCCCeEEEE-------Ee-CCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 778888899999 777766543221 22 223567899999999998877 7789999985
Q ss_pred --cCccccccceecccccccCCCeEEEEEC----CCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCCCccccccccccee
Q psy15549 111 --ERESGIANVEFASDLSRHQKAVNVVRFS----PNGELLASGDD-ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWI 183 (621)
Q Consensus 111 --~~~~~~~~~~~~~~~~~h~~~V~~i~~s----p~g~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (621)
+. +.+..+.... ....++|+ |+|++++++.. +++|.|+|..+.+.+..++......
T Consensus 227 ~~t~-------~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~--------- 289 (567)
T 1qks_A 227 MKEP-------TTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY--------- 289 (567)
T ss_dssp SSSC-------CEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT---------
T ss_pred CCCC-------cEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc---------
Confidence 33 3333443332 45789999 69998887664 5899999988877653331100000
Q ss_pred eeeeecCC-CCCeEEEEECCCCCEEE-EEeCCCeEEEEECCCCcEEE--EeccCCcceEEEEEcCCCCEEEEEe-CCCcE
Q psy15549 184 VTKILRGH-LEDVYDISWSPTSTHLI-SGSVDNTAIMWDVHKGKNLG--ILTEHKKFVQGVAWDPKNQYVATLS-SDRSL 258 (621)
Q Consensus 184 ~~~~~~~~-~~~v~~i~~spd~~~l~-s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~l~s~~-~dg~i 258 (621)
.....| ...+..+..++++..++ ....+|.|.++|..+.+.+. .+ ........+.|+|+|++|+++. .++.|
T Consensus 290 --~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V 366 (567)
T 1qks_A 290 --DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKL 366 (567)
T ss_dssp --TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEE
T ss_pred --ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeE
Confidence 000012 22678899999866544 44557999999987754322 22 2334567889999999988766 47889
Q ss_pred EEEEccCceeeeeccc-CCCCCCCccccccccccccccCCcccceeeee-ecCCCCeEEeccccccCCCCCCcceeeeee
Q psy15549 259 RTYSIQSKKVISRACR-SKLPVDSSHELFDKVVPLFHDDTMKSFFRRLT-FSPDGQLLIAPSGCLENSDSTRKPISVTHV 336 (621)
Q Consensus 259 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~spdg~~l~~~s~~~~~~d~~i~~~~~~~~ 336 (621)
.++|+.+++.+..+.. ...+ +.+ ..+. ++|++..+.+.+.. .++.+.+++....
T Consensus 367 ~ViD~~t~kl~~~i~vgg~~P-------------------hpg--~g~~~~~p~~g~v~~t~~~---g~~~Vsvid~~~~ 422 (567)
T 1qks_A 367 VVIDTKEGKLVAIEDTGGQTP-------------------HPG--RGANFVHPTFGPVWATSHM---GDDSVALIGTDPE 422 (567)
T ss_dssp EEEETTTTEEEEEEECSSSSB-------------------CCT--TCEEEEETTTEEEEEEEBS---SSSEEEEEECCTT
T ss_pred EEEECCCCcEEEEEeccCcCC-------------------CCc--cceeeECCCCCcEEEeCCC---CCCeEEEecCCCC
Confidence 9999999988776643 2211 111 1222 57875544433210 2456666664420
Q ss_pred eeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEc-------CCcEEEEeCCCC-----cee
Q psy15549 337 FTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVAT-------ENNILLYDTQHA-----SPF 404 (621)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~-----~~~ 404 (621)
.....-...+..+.........+. +.++++++.+... .+.|.++|+.+. ...
T Consensus 423 ~~~~~~~kvv~~i~~~g~g~~~i~----------------~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~ 486 (567)
T 1qks_A 423 GHPDNAWKILDSFPALGGGSLFIK----------------THPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPE 486 (567)
T ss_dssp TCTTTBTSEEEEEECSCSCCCCEE----------------CCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCC
T ss_pred CCccccCEEEEEEecCCCCCEEEE----------------eCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCC
Confidence 000000111111111111001111 2335667776552 359999999876 222
Q ss_pred -EEEecc-------cccceEEEEEcCCCCeEEEEe-----CCCcEEEEEecCCcCCcccCCC
Q psy15549 405 -AFIANI-------HYTKLTDITWSSDGKVLIASS-----TDGYCSIISFGDNEIGIPYVPP 453 (621)
Q Consensus 405 -~~~~~~-------h~~~v~~~~~spdg~~l~s~s-----~dg~i~iw~~~~~~~~~~~~~~ 453 (621)
..+..+ ....+..+.|+|+|+++..+. .++.|.|+|..++++...+..+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 548 (567)
T 1qks_A 487 FKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 548 (567)
T ss_dssp EEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred cEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCCC
Confidence 333211 135789999999999877663 3799999999999887777653
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.69 E-value=3.1e-15 Score=148.38 Aligned_cols=288 Identities=8% Similarity=0.061 Sum_probs=177.8
Q ss_pred eEEeccccccccceeeccccccccCcEEEEEEccCCCEEEEEc-----------CCceEEEEeccCccccccceeccccc
Q psy15549 58 IWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-----------DVGKEIWYLTERESGIANVEFASDLS 126 (621)
Q Consensus 58 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-----------d~~v~iw~~~~~~~~~~~~~~~~~~~ 126 (621)
+||..+++.. ..+..+..+ .++|+|||++|+++. ++.|.+||.... +....+.
T Consensus 35 v~D~~t~~~~-------~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~-------~~~~~i~ 98 (361)
T 2oiz_A 35 VYDYTNGKFL-------GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL-------TFEKEIS 98 (361)
T ss_dssp EEETTTCCEE-------EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC-------CEEEEEE
T ss_pred EEECCCCeEE-------EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC-------cEEEEEE
Confidence 8877655432 224444444 899999999998874 455999998754 2233322
Q ss_pred c------cCCCeEEEEECCCCCEEEEEeC--CCcEEEEEccCCCCCCCCCCCCcccccccccceeeeee-ecCCCCCeEE
Q psy15549 127 R------HQKAVNVVRFSPNGELLASGDD--ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKI-LRGHLEDVYD 197 (621)
Q Consensus 127 ~------h~~~V~~i~~sp~g~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~ 197 (621)
. +......++|+|+|++|+++.. +++|.+||+.+++.+ .. +. .. ....
T Consensus 99 ~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~---------------------~~~i~-~~-~~~~ 155 (361)
T 2oiz_A 99 LPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYV---------------------EDVTA-AA-GCWS 155 (361)
T ss_dssp ECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEE---------------------EEEGG-GT-TEEE
T ss_pred cCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEE---------------------EEEec-CC-Ccce
Confidence 1 2245678999999999998864 579999999988643 22 11 11 2233
Q ss_pred EEECCCC-CEEEEEeCCCeEEEEECCC-CcEEEE------eccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceee
Q psy15549 198 ISWSPTS-THLISGSVDNTAIMWDVHK-GKNLGI------LTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVI 269 (621)
Q Consensus 198 i~~spd~-~~l~s~~~dg~i~vwd~~~-~~~~~~------~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 269 (621)
+.+.|++ ..+++.+.||.+.+|++.. ++.... +..+..++ .+.+++++..++..+.++.|.++|+......
T Consensus 156 v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~ 234 (361)
T 2oiz_A 156 VIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVK 234 (361)
T ss_dssp EEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCE
T ss_pred eEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCce
Confidence 5677765 6778888899999999865 554421 22222222 3345677888888888999999998754321
Q ss_pred --eecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccc-cc-----cCCCCCCcceeeeeeeeecc
Q psy15549 270 --SRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSG-CL-----ENSDSTRKPISVTHVFTRAC 341 (621)
Q Consensus 270 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~-~~-----~~~d~~i~~~~~~~~~~~~~ 341 (621)
..+.... . ... ...........++|+|+++.++++.. .. ......+.+||.....
T Consensus 235 ~~~~~~~~~-----~-----~~~---~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~---- 297 (361)
T 2oiz_A 235 VDGPWSLLN-----D-----EDK---AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ---- 297 (361)
T ss_dssp EEEEEESCC-----H-----HHH---HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE----
T ss_pred ecccccccC-----c-----ccc---ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc----
Confidence 1111000 0 000 00000011134789999988887642 00 0012356666654221
Q ss_pred cCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCC--ceeEEEecccccceEEEE
Q psy15549 342 LNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHA--SPFAFIANIHYTKLTDIT 419 (621)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~h~~~v~~~~ 419 (621)
....+..+. ...+.++| +++++++++. +.|.+||..++ +.+..+. .+......++
T Consensus 298 ---~v~~i~~~~--p~~ia~sp----------------dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~~ 354 (361)
T 2oiz_A 298 ---RVARIPGRD--ALSMTIDQ----------------QRNLMLTLDG-GNVNVYDISQPEPKLLRTIE-GAAEASLQVQ 354 (361)
T ss_dssp ---EEEEEECTT--CCEEEEET----------------TTTEEEEECS-SCEEEEECSSSSCEEEEEET-TSCSSEEEEE
T ss_pred ---EEEEEecCC--eeEEEECC----------------CCCEEEEeCC-CeEEEEECCCCcceeeEEec-cCCCCcEEEE
Confidence 111222222 55555555 7788887776 99999999999 8888763 3667788999
Q ss_pred EcCCCC
Q psy15549 420 WSSDGK 425 (621)
Q Consensus 420 ~spdg~ 425 (621)
++|+|+
T Consensus 355 ~~p~G~ 360 (361)
T 2oiz_A 355 FHPVGG 360 (361)
T ss_dssp ECCCSC
T ss_pred ecCCCC
Confidence 999986
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.69 E-value=1.3e-14 Score=158.21 Aligned_cols=249 Identities=10% Similarity=0.041 Sum_probs=165.5
Q ss_pred cccCcEEEEEEccCCCEEEEEc-CC-----ceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCc
Q psy15549 79 RHQKAVNVVRFSPNGELLASGD-DV-----GKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDEST 152 (621)
Q Consensus 79 ~h~~~V~~l~~spdg~~las~~-d~-----~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~ 152 (621)
+|...+..++|||||++||.+. ++ .|++|++.++. ...... ....+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~-------~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~ 193 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK-------ELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQ 193 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE-------EEEEEE-EEECSCCEEECTTSSEEEEEECCCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-------CCcccc-cCcccceEEEEeCCCEEEEEEECCc
Confidence 4555789999999999999765 22 68999998763 222111 1123667999999999999887765
Q ss_pred ----------------EEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeC----
Q psy15549 153 ----------------IIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSV---- 212 (621)
Q Consensus 153 ----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~---- 212 (621)
|++|++.++..... +......|...+..+.|+|||++|+.++.
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~-----------------~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 256 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDI-----------------LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD 256 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCGGGCE-----------------EEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred cccccccccccCCCCEEEEEECCCCcccce-----------------EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence 99999987652100 01122235566889999999999988765
Q ss_pred -CCeEEEEECCC------Cc-EEEEeccCCcceEEEEEcCCCCEEEEEeCC----CcEEEEEccCcee--eeecccCCCC
Q psy15549 213 -DNTAIMWDVHK------GK-NLGILTEHKKFVQGVAWDPKNQYVATLSSD----RSLRTYSIQSKKV--ISRACRSKLP 278 (621)
Q Consensus 213 -dg~i~vwd~~~------~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~~~ 278 (621)
+..|++||+.+ +. ....+..+...+.. .|+|+|+.|+..+.. +.|.+||+.++.. ...+..+
T Consensus 257 ~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~--- 332 (710)
T 2xdw_A 257 PVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE--- 332 (710)
T ss_dssp SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC---
T ss_pred CccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC---
Confidence 56899999986 43 35556566665554 488999988877653 3588999876531 1111100
Q ss_pred CCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceee
Q psy15549 279 VDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVA 358 (621)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (621)
.....+..++|++++.++
T Consensus 333 ------------------~~~~~~~~~~~~~~~~lv-------------------------------------------- 350 (710)
T 2xdw_A 333 ------------------HEKDVLEWVACVRSNFLV-------------------------------------------- 350 (710)
T ss_dssp ------------------CSSCEEEEEEEETTTEEE--------------------------------------------
T ss_pred ------------------CCCCeEEEEEEEcCCEEE--------------------------------------------
Confidence 000123445555433333
Q ss_pred eeccceeeecCCCCCCCCccCCCcEEEEEEcCC--cEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEE-e---C
Q psy15549 359 VKCCPVLFELKPSDDKPLFKLPYRIVIAVATEN--NILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIAS-S---T 432 (621)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~-s---~ 432 (621)
++...++ .|++||+.+++.+..+. .+...|..++++|+++.|+.. + .
T Consensus 351 --------------------------~~~~~~g~~~l~~~~~~~g~~~~~l~-~~~~~v~~~~~s~d~~~l~~~~ss~~~ 403 (710)
T 2xdw_A 351 --------------------------LCYLHDVKNTLQLHDLATGALLKIFP-LEVGSVVGYSGQKKDTEIFYQFTSFLS 403 (710)
T ss_dssp --------------------------EEEEETTEEEEEEEETTTCCEEEEEC-CCSSEEEEEECCTTCSEEEEEEECSSC
T ss_pred --------------------------EEEEECCEEEEEEEECCCCCEEEecC-CCCceEEEEecCCCCCEEEEEEeCCCC
Confidence 3333455 56778887777666664 467788999999999866633 2 4
Q ss_pred CCcEEEEEecCCc
Q psy15549 433 DGYCSIISFGDNE 445 (621)
Q Consensus 433 dg~i~iw~~~~~~ 445 (621)
.+.|++||+.+++
T Consensus 404 P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 404 PGIIYHCDLTKEE 416 (710)
T ss_dssp CCEEEEEETTSSS
T ss_pred CCEEEEEECCCCc
Confidence 5789999998877
No 180
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.69 E-value=3.5e-13 Score=130.06 Aligned_cols=283 Identities=10% Similarity=-0.006 Sum_probs=186.0
Q ss_pred CCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEcc
Q psy15549 12 NRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP 91 (621)
Q Consensus 12 h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 91 (621)
+...+.+++++++|. ++++...++.|. +|+.. +..... .+..+...+.++++++
T Consensus 13 ~~~~~~~i~~d~~g~-----l~v~~~~~~~v~--------------~~d~~-~~~~~~------~~~~~~~~~~~i~~~~ 66 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-----VWITQHKANMIS--------------CINLD-GKITEY------PLPTPDAKVMCLTISS 66 (299)
T ss_dssp SSCCEEEEEECTTSC-----EEEEETTTTEEE--------------EECTT-CCEEEE------ECSSTTCCEEEEEECT
T ss_pred cCCCccceEECCCCC-----EEEEecCCCcEE--------------EEcCC-CCeEEe------cCCcccCceeeEEECC
Confidence 345799999999997 777776678888 66655 221110 1122346799999999
Q ss_pred CCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCC
Q psy15549 92 NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSS 170 (621)
Q Consensus 92 dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 170 (621)
+|.++++.. ++.|..|+.... +.. ..+......+..+++.++|.++++...++.|.+||. ++...
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~g~------~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~------ 132 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKKGI------IKE-YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR------ 132 (299)
T ss_dssp TSCEEEEETTTTEEEEECTTSC------EEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE------
T ss_pred CCCEEEeCCCCCeEEEECCCCc------EEE-EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE------
Confidence 999888876 677888876521 111 112224457899999999988888777889999997 44321
Q ss_pred CcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE-eccCCcceEEEEEcCCCCEE
Q psy15549 171 NLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGI-LTEHKKFVQGVAWDPKNQYV 249 (621)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l 249 (621)
......+...+..+++.++|+++++...++.|..||. +++.... +......+.+++++++|+++
T Consensus 133 --------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 197 (299)
T 2z2n_A 133 --------------EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALW 197 (299)
T ss_dssp --------------EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEE
T ss_pred --------------EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEE
Confidence 0112234567899999999988877777789999998 6665433 33345568899999999977
Q ss_pred EEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCc
Q psy15549 250 ATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRK 329 (621)
Q Consensus 250 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~ 329 (621)
++...++.|.+||. +++... +.. ......+.+++++++|+.+++..
T Consensus 198 v~~~~~~~i~~~~~-~g~~~~-~~~---------------------~~~~~~~~~i~~~~~g~l~v~~~----------- 243 (299)
T 2z2n_A 198 FVEIIGNKIGRITT-SGEITE-FKI---------------------PTPNARPHAITAGAGIDLWFTEW----------- 243 (299)
T ss_dssp EEETTTTEEEEECT-TCCEEE-EEC---------------------SSTTCCEEEEEECSTTCEEEEET-----------
T ss_pred EEccCCceEEEECC-CCcEEE-EEC---------------------CCCCCCceeEEECCCCCEEEecc-----------
Confidence 76666788999998 655322 110 01122356788888877554432
Q ss_pred ceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEec
Q psy15549 330 PISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409 (621)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 409 (621)
.++.|..||. ++........
T Consensus 244 -----------------------------------------------------------~~~~i~~~d~-~g~~~~~~~~ 263 (299)
T 2z2n_A 244 -----------------------------------------------------------GANKIGRLTS-NNIIEEYPIQ 263 (299)
T ss_dssp -----------------------------------------------------------TTTEEEEEET-TTEEEEEECS
T ss_pred -----------------------------------------------------------CCceEEEECC-CCceEEEeCC
Confidence 3456667776 3332211112
Q ss_pred ccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCc
Q psy15549 410 IHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNE 445 (621)
Q Consensus 410 ~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~ 445 (621)
.+...+.++++ ++|+++++.+ .+.|..++..+++
T Consensus 264 ~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 264 IKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred CCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 34467899999 8888776655 5678788877654
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=2.1e-14 Score=137.91 Aligned_cols=241 Identities=13% Similarity=0.166 Sum_probs=167.9
Q ss_pred CCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEE-ccC
Q psy15549 14 DPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRF-SPN 92 (621)
Q Consensus 14 ~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-spd 92 (621)
....+|++++++. ++++...++.|. +|+.... .... +.......+|...+.++++ .++
T Consensus 30 ~~p~~v~~~~~g~-----l~v~~~~~~~i~--------------~~d~~g~-~~~~-~~~~~~~~~~~~~p~~i~~~~~~ 88 (286)
T 1q7f_A 30 TEPSGVAVNAQND-----IIVADTNNHRIQ--------------IFDKEGR-FKFQ-FGECGKRDSQLLYPNRVAVVRNS 88 (286)
T ss_dssp SCEEEEEECTTCC-----EEEEEGGGTEEE--------------EECTTSC-EEEE-ECCBSSSTTCBSSEEEEEEETTT
T ss_pred CCCceEEECCCCC-----EEEEECCCCEEE--------------EECCCCc-EEEE-ecccCCCcccccCceEEEEEcCC
Confidence 4689999999997 888888899999 5554421 1100 0000011245567899999 578
Q ss_pred CCEEEEEc--CCceEEEEeccCccccccceeccccc-ccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q psy15549 93 GELLASGD--DVGKEIWYLTERESGIANVEFASDLS-RHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPS 169 (621)
Q Consensus 93 g~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 169 (621)
++++++.. ++.|.+|+. .+ .....+. .+...+..++++++|+++++...++.|.+||... +.+
T Consensus 89 g~l~v~~~~~~~~i~~~d~-~g-------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~----- 154 (286)
T 1q7f_A 89 GDIIVTERSPTHQIQIYNQ-YG-------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVL----- 154 (286)
T ss_dssp TEEEEEECGGGCEEEEECT-TS-------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE-----
T ss_pred CeEEEEcCCCCCEEEEECC-CC-------cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEE-----
Confidence 88877774 788999983 33 2222222 2445789999999999888888889999999643 221
Q ss_pred CCcccccccccceeeeeee--cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC--CcceEEEEEcCC
Q psy15549 170 SNLDEENVNKEHWIVTKIL--RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEH--KKFVQGVAWDPK 245 (621)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~l~~sp~ 245 (621)
..+ ..+...+..++++++|+++++...++.|++||. +++.+..+..+ ...+..++++++
T Consensus 155 ----------------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~ 217 (286)
T 1q7f_A 155 ----------------HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSN 217 (286)
T ss_dssp ----------------EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTT
T ss_pred ----------------EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCC
Confidence 122 244567899999999998887778899999997 56666666443 357889999999
Q ss_pred CCEEEEEeCCC-cEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCC
Q psy15549 246 NQYVATLSSDR-SLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENS 324 (621)
Q Consensus 246 ~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~ 324 (621)
|+++++...++ .|.+||. .++.+..+.... ....+.+++++|+|+++++ + .
T Consensus 218 G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~---------------------~~~~~~~i~~~~~g~l~vs-~-----~ 269 (286)
T 1q7f_A 218 GEILIADNHNNFNLTIFTQ-DGQLISALESKV---------------------KHAQCFDVALMDDGSVVLA-S-----K 269 (286)
T ss_dssp CCEEEEECSSSCEEEEECT-TSCEEEEEEESS---------------------CCSCEEEEEEETTTEEEEE-E-----T
T ss_pred CCEEEEeCCCCEEEEEECC-CCCEEEEEcccC---------------------CCCcceeEEECCCCcEEEE-C-----C
Confidence 99888877775 9999996 455555443211 1113468999999986665 5 5
Q ss_pred CCCCcceeee
Q psy15549 325 DSTRKPISVT 334 (621)
Q Consensus 325 d~~i~~~~~~ 334 (621)
++.+++|+..
T Consensus 270 ~~~v~v~~~~ 279 (286)
T 1q7f_A 270 DYRLYIYRYV 279 (286)
T ss_dssp TTEEEEEECS
T ss_pred CCeEEEEEcc
Confidence 7888888754
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=1.8e-15 Score=149.79 Aligned_cols=247 Identities=15% Similarity=0.125 Sum_probs=159.5
Q ss_pred CcEEEEEEccCCCEEEEEc----------CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCC-
Q psy15549 82 KAVNVVRFSPNGELLASGD----------DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE- 150 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~----------d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~d- 150 (621)
..+..+++ ||+.|+... +..+.+|++..+. . ..+ ..+..++|+|||++|+.++.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~-------~-~~l----~~~~~~~~SpDg~~la~~~~~~ 80 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA-------R-RFI----ENATMPRISPDGKKIAFMRANE 80 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC-------E-EEE----ESCEEEEECTTSSEEEEEEEET
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc-------e-EEc----ccCCCeEECCCCCEEEEEEecc
Confidence 35677778 899888642 3446777776642 1 122 468889999999999987654
Q ss_pred --C--cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCC-------------
Q psy15549 151 --S--TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVD------------- 213 (621)
Q Consensus 151 --g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~d------------- 213 (621)
+ .|.+|++.+++. ..+..+.. +..++|+|||+.|+.++.+
T Consensus 81 ~~~~~~l~~~~~~~g~~----------------------~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 81 EKKVSEIWVADLETLSS----------------------KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp TTTEEEEEEEETTTTEE----------------------EEEEEESE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred CCCcceEEEEECCCCce----------------------EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 3 377778776643 22222233 8999999999998887642
Q ss_pred --------------CeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCC-------cEEEEEccCceeeeec
Q psy15549 214 --------------NTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDR-------SLRTYSIQSKKVISRA 272 (621)
Q Consensus 214 --------------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~ 272 (621)
..|++||+.+++.+..+.. . .+..++|+|+| +++++..++ ...||.+.+++. ..+
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l 213 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKM 213 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEE
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEe
Confidence 5799999988877455544 3 78899999999 777776542 445555544433 222
Q ss_pred ccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCc
Q psy15549 273 CRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSL 352 (621)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 352 (621)
.. . ..+.. ++|||++|+.++. +..-.
T Consensus 214 ~~-----------------------~-~~~~~--~spdg~~l~~~~~-----~~~~~----------------------- 239 (347)
T 2gop_A 214 FE-----------------------K-VSFYA--VDSDGERILLYGK-----PEKKY----------------------- 239 (347)
T ss_dssp EE-----------------------E-ESEEE--EEECSSCEEEEEC-----CSSSC-----------------------
T ss_pred cc-----------------------C-cceee--ECCCCCEEEEEEc-----cccCC-----------------------
Confidence 10 0 11223 3899998877651 10000
Q ss_pred ccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEE-EEEcCCCCeEEEEe
Q psy15549 353 QYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTD-ITWSSDGKVLIASS 431 (621)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~-~~~spdg~~l~s~s 431 (621)
......|++|| +++. ..+...|...+.. +.|+ || ++++++
T Consensus 240 ----------------------------------~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~ 280 (347)
T 2gop_A 240 ----------------------------------MSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLF 280 (347)
T ss_dssp ----------------------------------CCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEE
T ss_pred ----------------------------------ccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EEEEEe
Confidence 00235678888 4443 3343456677886 9999 98 889999
Q ss_pred CCCcEEEEEecCCcCCcccCCCCCcccccCCCC
Q psy15549 432 TDGYCSIISFGDNEIGIPYVPPSGEESKENDPT 464 (621)
Q Consensus 432 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (621)
.++.++|| +.+++....+ .+...+..+.+++
T Consensus 281 ~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~ 311 (347)
T 2gop_A 281 EEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE 311 (347)
T ss_dssp ETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS
T ss_pred cCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC
Confidence 99999999 9866553333 3344555566666
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=3.7e-15 Score=146.70 Aligned_cols=263 Identities=11% Similarity=0.034 Sum_probs=174.3
Q ss_pred CcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccC
Q psy15549 82 KAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKT 160 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~ 160 (621)
..|.+++|++++..++... ++.++.|. . .....+..+...+.+++|+++|++++++..++.|.+||..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~ 75 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---A-------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET 75 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C-------EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred cccceeeecCCccceeEEeecccCcccc---c-------ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence 3467788999887666544 77888882 1 33444556667789999999999888888899999999887
Q ss_pred CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCC----CeEEEEECCCCcEEEEec--cCC
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVD----NTAIMWDVHKGKNLGILT--EHK 234 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~d----g~i~vwd~~~~~~~~~~~--~~~ 234 (621)
++.. .....+...+.+++++|+|+++++...+ +.|.+||..++.....+. .+.
T Consensus 76 ~~~~---------------------~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 134 (333)
T 2dg1_A 76 KEIK---------------------RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA 134 (333)
T ss_dssp CCEE---------------------EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred CcEE---------------------EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence 7531 2222456789999999999988877666 689999998776543332 234
Q ss_pred cceEEEEEcCCCCEEEEEeC------CCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeec
Q psy15549 235 KFVQGVAWDPKNQYVATLSS------DRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308 (621)
Q Consensus 235 ~~v~~l~~sp~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 308 (621)
..+..++++|+|+++++... .+.|..||..+++...... ....+..++|+
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------------------~~~~~~~i~~~ 190 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ------------------------NISVANGIALS 190 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE------------------------EESSEEEEEEC
T ss_pred CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec------------------------CCCcccceEEC
Confidence 56889999999988776543 2455556654443322110 01124678899
Q ss_pred CCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEE
Q psy15549 309 PDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVA 388 (621)
Q Consensus 309 pdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (621)
|+|++|+++. .
T Consensus 191 ~dg~~l~v~~---------------------------------------------------------------------~ 201 (333)
T 2dg1_A 191 TDEKVLWVTE---------------------------------------------------------------------T 201 (333)
T ss_dssp TTSSEEEEEE---------------------------------------------------------------------G
T ss_pred CCCCEEEEEe---------------------------------------------------------------------C
Confidence 9988665443 1
Q ss_pred cCCcEEEEeCCC-CceeEEE-------ecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCC-----
Q psy15549 389 TENNILLYDTQH-ASPFAFI-------ANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSG----- 455 (621)
Q Consensus 389 ~dg~i~iwd~~~-~~~~~~~-------~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~----- 455 (621)
.++.|++||..+ +..+..+ ..++ ..+..++++++|+++++...++.|.+|+. +++....+..+..
T Consensus 202 ~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~ 279 (333)
T 2dg1_A 202 TANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHM 279 (333)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCS
T ss_pred CCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccc
Confidence 234566666542 2221110 0112 36788999999998888878899999998 4555555544432
Q ss_pred -cccccCCCCCCCCcc
Q psy15549 456 -EESKENDPTKGEPVR 470 (621)
Q Consensus 456 -~~~~~~~~~~~~~~~ 470 (621)
....+.+.+++..+.
T Consensus 280 ~~~~~~~~~~dg~~L~ 295 (333)
T 2dg1_A 280 LRSTHPQFIPGTNQLI 295 (333)
T ss_dssp CBCCEEEECTTSCEEE
T ss_pred cCcceEEECCCCCEEE
Confidence 355566677765554
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.66 E-value=1e-14 Score=158.35 Aligned_cols=285 Identities=9% Similarity=-0.005 Sum_probs=182.3
Q ss_pred EccCCCEEEEEc-CC---ceEEEEeccCccccccceec-ccccccCCCeEEEEECCCCCEEEE-----EeCCCcEEEEEc
Q psy15549 89 FSPNGELLASGD-DV---GKEIWYLTERESGIANVEFA-SDLSRHQKAVNVVRFSPNGELLAS-----GDDESTIIVWKQ 158 (621)
Q Consensus 89 ~spdg~~las~~-d~---~v~iw~~~~~~~~~~~~~~~-~~~~~h~~~V~~i~~sp~g~~l~s-----~s~dg~i~vwd~ 158 (621)
.+|+|.+++... ++ .-.+|.....+.....+.-. ..-.+|...+..++|||||++||. |+.+..|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 358999988765 33 35678776432211111111 112346667999999999999984 444578999999
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCe-------------EEEEECCCCc
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNT-------------AIMWDVHKGK 225 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~-------------i~vwd~~~~~ 225 (621)
.+++.+.. ..+... ....++|+|||+.|+.++.+.. |++|++.++.
T Consensus 155 ~tg~~~~~-------------------~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~ 213 (695)
T 2bkl_A 155 DSGEWSKV-------------------DVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP 213 (695)
T ss_dssp TTCCBCSS-------------------CCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG
T ss_pred CCCCCcCC-------------------cccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCc
Confidence 99875310 011111 1257899999999999988766 9999998876
Q ss_pred ----EEEEeccCCcceEEEEEcCCCCEEEEEeCCC----cEEEEEccCceeeeecccCCCCCCCccccccccccccccCC
Q psy15549 226 ----NLGILTEHKKFVQGVAWDPKNQYVATLSSDR----SLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDT 297 (621)
Q Consensus 226 ----~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (621)
.+.....+...+..+.|+|||++|+..+.++ .|.+|+..++... .+..+
T Consensus 214 ~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~---------------------- 270 (695)
T 2bkl_A 214 SKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKG---------------------- 270 (695)
T ss_dssp GGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEEC----------------------
T ss_pred hhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecC----------------------
Confidence 3333344556788999999999998877665 5666655443321 11100
Q ss_pred cccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCc
Q psy15549 298 MKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLF 377 (621)
Q Consensus 298 ~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (621)
...+....+ ++|. ++..+. .
T Consensus 271 -~~~~~~~~~-~~g~-l~~~s~----~----------------------------------------------------- 290 (695)
T 2bkl_A 271 -VGAKYEVHA-WKDR-FYVLTD----E----------------------------------------------------- 290 (695)
T ss_dssp -SSCCEEEEE-ETTE-EEEEEC----T-----------------------------------------------------
T ss_pred -CCceEEEEe-cCCc-EEEEEC----C-----------------------------------------------------
Confidence 001122333 4444 333220 0
Q ss_pred cCCCcEEEEEEcCCcEEEEeCCCCce--eEEEeccc-ccceEEEEEcCCCCeEEEEeCCCcEEEEEec-CCcCCcccCCC
Q psy15549 378 KLPYRIVIAVATENNILLYDTQHASP--FAFIANIH-YTKLTDITWSSDGKVLIASSTDGYCSIISFG-DNEIGIPYVPP 453 (621)
Q Consensus 378 ~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~h-~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~-~~~~~~~~~~~ 453 (621)
...++.|++||+.++.. ...+...+ ...+..++|+ ++.++++...|+..+||.++ ++.....+..+
T Consensus 291 ---------~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~ 360 (695)
T 2bkl_A 291 ---------GAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLP 360 (695)
T ss_dssp ---------TCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCS
T ss_pred ---------CCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCC
Confidence 01357889999887753 23333323 4568889998 77788888999999999877 45544555554
Q ss_pred -CCcccccCCCCCCCCcc----cCCCcccHHHhcccCcc
Q psy15549 454 -SGEESKENDPTKGEPVR----SEDKPRSAEQAKGEGKV 487 (621)
Q Consensus 454 -~~~~~~~~~~~~~~~~~----s~~~~~~~~~w~~~~~~ 487 (621)
...+..+.+++++..++ +...++.++.|++....
T Consensus 361 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 361 GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 55566777888888777 66788999999876543
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=1e-14 Score=158.95 Aligned_cols=284 Identities=11% Similarity=0.072 Sum_probs=183.7
Q ss_pred cCCCEEEEEc-C-Cc--eEEEEeccCccccccc-eecccccccCCCeEEEEECCCCCEEEEEeCCC-----cEEEEEccC
Q psy15549 91 PNGELLASGD-D-VG--KEIWYLTERESGIANV-EFASDLSRHQKAVNVVRFSPNGELLASGDDES-----TIIVWKQKT 160 (621)
Q Consensus 91 pdg~~las~~-d-~~--v~iw~~~~~~~~~~~~-~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg-----~i~vwd~~~ 160 (621)
|+|++++... + +. -.+|...........+ .....-.+|...+..++|||||++||.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8999888765 2 22 2677765432211111 00111223555788999999999998776543 899999998
Q ss_pred CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCe----------------EEEEECCCC
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNT----------------AIMWDVHKG 224 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~----------------i~vwd~~~~ 224 (621)
++... ..+. ...+..++|+|||+.|+.++.++. |++|++.++
T Consensus 161 g~~~~--------------------~~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~ 218 (710)
T 2xdw_A 161 AKELP--------------------DVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD 218 (710)
T ss_dssp TEEEE--------------------EEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred CCCCc--------------------cccc--CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCC
Confidence 86431 1111 122567999999999999888765 999999887
Q ss_pred cE----EEEeccCCcceEEEEEcCCCCEEEEEeC-----CCcEEEEEccC------ce-eeeecccCCCCCCCccccccc
Q psy15549 225 KN----LGILTEHKKFVQGVAWDPKNQYVATLSS-----DRSLRTYSIQS------KK-VISRACRSKLPVDSSHELFDK 288 (621)
Q Consensus 225 ~~----~~~~~~~~~~v~~l~~sp~~~~l~s~~~-----dg~i~iwd~~~------~~-~~~~~~~~~~~~~~~~~~~~~ 288 (621)
+. +.....+...+..+.|+|||++|+..+. +..|.+||+.+ +. ....+..+
T Consensus 219 ~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~------------- 285 (710)
T 2xdw_A 219 QSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN------------- 285 (710)
T ss_dssp GGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS-------------
T ss_pred cccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC-------------
Confidence 62 2232334556789999999999988765 56899999876 32 12222111
Q ss_pred cccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeec
Q psy15549 289 VVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFEL 368 (621)
Q Consensus 289 ~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (621)
...+. ..|+|+|+.|+..+. .
T Consensus 286 ----------~~~~~-~~~s~dg~~l~~~s~-----~------------------------------------------- 306 (710)
T 2xdw_A 286 ----------FEGEY-DYVTNEGTVFTFKTN-----R------------------------------------------- 306 (710)
T ss_dssp ----------SSSCE-EEEEEETTEEEEEEC-----T-------------------------------------------
T ss_pred ----------CCcEE-EEEeccCCEEEEEEC-----C-------------------------------------------
Confidence 01111 247777777766541 0
Q ss_pred CCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCce--eEEEecccc-cceEEEEEcCCCCeEEEEeCCCcE--EEEEecC
Q psy15549 369 KPSDDKPLFKLPYRIVIAVATENNILLYDTQHASP--FAFIANIHY-TKLTDITWSSDGKVLIASSTDGYC--SIISFGD 443 (621)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~h~-~~v~~~~~spdg~~l~s~s~dg~i--~iw~~~~ 443 (621)
.+....|++||+.++.. ...+...+. ..+.+++|++++.++++...|+.. .+|++.+
T Consensus 307 ------------------~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~ 368 (710)
T 2xdw_A 307 ------------------HSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT 368 (710)
T ss_dssp ------------------TCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT
T ss_pred ------------------CCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC
Confidence 00235788899887642 344433222 268889999888888888888865 4556556
Q ss_pred CcCCcccCCCCCcccccCCCCCCCCcc----cCCCcccHHHhcccCc
Q psy15549 444 NEIGIPYVPPSGEESKENDPTKGEPVR----SEDKPRSAEQAKGEGK 486 (621)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----s~~~~~~~~~w~~~~~ 486 (621)
|+....+..+.+.+..+.+++++..++ +...++.++.|++...
T Consensus 369 g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 369 GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred CCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 776666776766666777888887555 5567888888886543
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=7.4e-15 Score=159.51 Aligned_cols=163 Identities=9% Similarity=-0.028 Sum_probs=110.7
Q ss_pred ccccCcEEEEEEccCCCEEEEEc------CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCC
Q psy15549 78 SRHQKAVNVVRFSPNGELLASGD------DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDES 151 (621)
Q Consensus 78 ~~h~~~V~~l~~spdg~~las~~------d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg 151 (621)
.+|...+.+++|||||++||.+. +..|++|++.++... ....+... ....++|+|||+.|+.++.|.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~-----~~~~~~~~--~~~~~~wspDg~~l~~~~~d~ 189 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS-----KVDVIEGG--KYATPKWTPDSKGFYYEWLPT 189 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC-----SSCCBSCC--TTCCCEECTTSSEEEEEECCC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc-----CCcccCcc--cccceEEecCCCEEEEEEecC
Confidence 35666799999999999999543 246899999876310 01111111 125789999999999998877
Q ss_pred c-------------EEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCC----
Q psy15549 152 T-------------IIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDN---- 214 (621)
Q Consensus 152 ~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg---- 214 (621)
. |++|++.++..... +......+...+..+.|+|||++|+.++.++
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~-----------------lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDT-----------------VVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN 252 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCE-----------------EEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred CCCCccccCCCCCEEEEEECCCCchhce-----------------EEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence 6 99999987753110 1122334556789999999999998877665
Q ss_pred eEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeC----CCcEEEEEccCce
Q psy15549 215 TAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSS----DRSLRTYSIQSKK 267 (621)
Q Consensus 215 ~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~----dg~i~iwd~~~~~ 267 (621)
.|++|+..++.. ..+..+...+....+ ++|. |+..+. ++.|.+||+.++.
T Consensus 253 ~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 253 DVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred EEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 677777655543 444455555666666 5666 554443 5789999987653
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=9.7e-14 Score=131.95 Aligned_cols=241 Identities=8% Similarity=0.008 Sum_probs=161.2
Q ss_pred cEEEEEEccCCCEEE-EEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccC
Q psy15549 83 AVNVVRFSPNGELLA-SGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKT 160 (621)
Q Consensus 83 ~V~~l~~spdg~~la-s~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~ 160 (621)
...+++++++|++++ +.. ++.|.+|+..... .......+...+.+++++++|+++++.. ++.|.+||...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-------TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc-------cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC
Confidence 678999999999777 433 6778888765431 1111122334678899999998666665 88999999776
Q ss_pred CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEE
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGV 240 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l 240 (621)
.... .........+..++++++|+++++...++.|.+|+..+.............+.++
T Consensus 97 ~~~~---------------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i 155 (270)
T 1rwi_B 97 NNQT---------------------VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV 155 (270)
T ss_dssp SCCE---------------------ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCE
T ss_pred ceEe---------------------eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeE
Confidence 5421 1111233568999999999977777778899999876554433332333467889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecccc
Q psy15549 241 AWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGC 320 (621)
Q Consensus 241 ~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~ 320 (621)
+++++|+++++...++.|.+||........... .....+.+++++++|..+++..
T Consensus 156 ~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-----------------------~~~~~p~~i~~d~~g~l~v~~~-- 210 (270)
T 1rwi_B 156 AVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF-----------------------TDITAPWGIAVDEAGTVYVTEH-- 210 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECTTTCCEEECCC-----------------------SSCCSEEEEEECTTCCEEEEET--
T ss_pred EEeCCCCEEEEECCCCEEEEEecCCCceEeecc-----------------------cCCCCceEEEECCCCCEEEEEC--
Confidence 999999977766667899999987654332111 0012346788888875444432
Q ss_pred ccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCC
Q psy15549 321 LENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQH 400 (621)
Q Consensus 321 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 400 (621)
.++.|.+||...
T Consensus 211 --------------------------------------------------------------------~~~~v~~~~~~~ 222 (270)
T 1rwi_B 211 --------------------------------------------------------------------NTNQVVKLLAGS 222 (270)
T ss_dssp --------------------------------------------------------------------TTSCEEEECTTC
T ss_pred --------------------------------------------------------------------CCCcEEEEcCCC
Confidence 345677777655
Q ss_pred CceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcC
Q psy15549 401 ASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEI 446 (621)
Q Consensus 401 ~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~ 446 (621)
..... ....+...+.+++++++|+.+++...++.|+++++...+.
T Consensus 223 ~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 223 TTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp SCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred Cccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 43322 2122335789999999999888888999999999886554
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=1.1e-13 Score=133.57 Aligned_cols=242 Identities=12% Similarity=0.127 Sum_probs=161.1
Q ss_pred cccccCcEEEEEEccCCC-EEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEE
Q psy15549 77 LSRHQKAVNVVRFSPNGE-LLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTII 154 (621)
Q Consensus 77 ~~~h~~~V~~l~~spdg~-~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~ 154 (621)
+..+.....+++|+|+|+ +++++. ++.|..|+...+ ...+..+...+.+++++++|+++++...++.|.
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---------eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 344556788999999998 566665 778999987753 223344667799999999999888877778999
Q ss_pred EEEccCCCCCCCCCCCCcccccccccceeeeeeecC-CCCCeEEEEECCCCCEEEEE----e-------------CCCeE
Q psy15549 155 VWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRG-HLEDVYDISWSPTSTHLISG----S-------------VDNTA 216 (621)
Q Consensus 155 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~spd~~~l~s~----~-------------~dg~i 216 (621)
+||..+++.... .....+ ....+..++++|+|+++++. + ..+.|
T Consensus 94 ~~d~~~g~~~~~------------------~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l 155 (296)
T 3e5z_A 94 RQREPGGEWESI------------------ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV 155 (296)
T ss_dssp EECSTTCCEEEE------------------ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred EEcCCCCcEEEE------------------eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEE
Confidence 999877653210 000111 12356789999999988873 2 13456
Q ss_pred EEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcc-Ccee---eeecccCCCCCCCccccccccccc
Q psy15549 217 IMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQ-SKKV---ISRACRSKLPVDSSHELFDKVVPL 292 (621)
Q Consensus 217 ~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 292 (621)
..++.. ++ +..+..+......++|+|+++.|++.+.++.|.+|++. ++.. ...+ .
T Consensus 156 ~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~------------------ 214 (296)
T 3e5z_A 156 FRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T------------------ 214 (296)
T ss_dssp EEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C------------------
T ss_pred EEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e------------------
Confidence 666654 44 34444566677899999999999777778899999986 4433 1111 0
Q ss_pred cccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCC
Q psy15549 293 FHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSD 372 (621)
Q Consensus 293 ~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (621)
.....+.+++++++|+++++
T Consensus 215 ----~~~~~p~~i~~d~~G~l~v~-------------------------------------------------------- 234 (296)
T 3e5z_A 215 ----VEPGKTDGLRVDAGGLIWAS-------------------------------------------------------- 234 (296)
T ss_dssp ----CSSSCCCSEEEBTTSCEEEE--------------------------------------------------------
T ss_pred ----CCCCCCCeEEECCCCCEEEE--------------------------------------------------------
Confidence 01112345566666553332
Q ss_pred CCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEE-cCCCCeEEEEeCCCcEEEEEecCCcC
Q psy15549 373 DKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITW-SSDGKVLIASSTDGYCSIISFGDNEI 446 (621)
Q Consensus 373 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~-spdg~~l~s~s~dg~i~iw~~~~~~~ 446 (621)
. ++.|.+||.. ++.+..+.. +.. +++++| +|+++.|++++.++ +.-++..+..+
T Consensus 235 ---------------~-~~~v~~~~~~-g~~~~~~~~-~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 235 ---------------A-GDGVHVLTPD-GDELGRVLT-PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp ---------------E-TTEEEEECTT-SCEEEEEEC-SSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred ---------------c-CCeEEEECCC-CCEEEEEEC-CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 2 5778999986 666666643 555 899999 68999898888763 44555555554
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.61 E-value=1.9e-13 Score=131.83 Aligned_cols=230 Identities=14% Similarity=0.097 Sum_probs=159.0
Q ss_pred eeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 7 EISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 7 ~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
+.+..+.....+++|+|+++ .+++++..++.|. .|+...+ . . .+..+...+.+
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~----~l~~~~~~~~~i~--------------~~~~~~~-~-~-------~~~~~~~~~~~ 73 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARS----AVIFSDVRQNRTW--------------AWSDDGQ-L-S-------PEMHPSHHQNG 73 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGT----EEEEEEGGGTEEE--------------EEETTSC-E-E-------EEESSCSSEEE
T ss_pred EEEecCCccccCCeEeCCCC----EEEEEeCCCCEEE--------------EEECCCC-e-E-------EEECCCCCcce
Confidence 44445666789999999996 3677888889998 8887655 1 1 13446678999
Q ss_pred EEEccCCCEEEEEc-CCceEEEEeccCccccccceecc-cccc-cCCCeEEEEECCCCCEEEEEeC--------------
Q psy15549 87 VRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFAS-DLSR-HQKAVNVVRFSPNGELLASGDD-------------- 149 (621)
Q Consensus 87 l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~-~~~~-h~~~V~~i~~sp~g~~l~s~s~-------------- 149 (621)
++++++|+++++.. ++.|.+|+...+.. .... .... ....+..++++|+|+++++.+.
T Consensus 74 l~~~~dg~l~v~~~~~~~i~~~d~~~g~~-----~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~ 148 (296)
T 3e5z_A 74 HCLNKQGHLIACSHGLRRLERQREPGGEW-----ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEM 148 (296)
T ss_dssp EEECTTCCEEEEETTTTEEEEECSTTCCE-----EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCC
T ss_pred eeECCCCcEEEEecCCCeEEEEcCCCCcE-----EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccc
Confidence 99999999888776 57899999865521 1111 1111 1235678999999998887321
Q ss_pred ---CCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CCc
Q psy15549 150 ---ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVH-KGK 225 (621)
Q Consensus 150 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~-~~~ 225 (621)
.+.|..++.. +. . ..+..+......++|+|+++.|++.+.++.|.+|++. ++.
T Consensus 149 ~~~~~~l~~~~~~-g~-~---------------------~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~ 205 (296)
T 3e5z_A 149 ELPGRWVFRLAPD-GT-L---------------------SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE 205 (296)
T ss_dssp CSSSCEEEEECTT-SC-E---------------------EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC
T ss_pred cCCCcEEEEECCC-CC-E---------------------EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc
Confidence 2345444443 22 1 2334556678899999999988777778999999986 555
Q ss_pred E---EEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccce
Q psy15549 226 N---LGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFF 302 (621)
Q Consensus 226 ~---~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 302 (621)
. ...+..+...+.+++++++|+++++. ++.|.+|+.. ++.+..+..+ .. +
T Consensus 206 ~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~-----------------------~~-~ 258 (296)
T 3e5z_A 206 TEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTP-----------------------QT-T 258 (296)
T ss_dssp EEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECS-----------------------SC-C
T ss_pred CcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECC-----------------------CC-c
Confidence 4 23333345567789999999876655 8889999986 5555554321 11 4
Q ss_pred eeeee-cCCCCeEEecc
Q psy15549 303 RRLTF-SPDGQLLIAPS 318 (621)
Q Consensus 303 ~~~~~-spdg~~l~~~s 318 (621)
.+++| +|+++.|++++
T Consensus 259 ~~~~f~~~d~~~L~v~t 275 (296)
T 3e5z_A 259 SNLCFGGPEGRTLYMTV 275 (296)
T ss_dssp CEEEEESTTSCEEEEEE
T ss_pred eeEEEECCCCCEEEEEc
Confidence 78899 68999888876
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.60 E-value=1.2e-13 Score=135.16 Aligned_cols=274 Identities=8% Similarity=0.036 Sum_probs=183.3
Q ss_pred CCceEEEEeccCccccccceecccc------cccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCccc
Q psy15549 101 DVGKEIWYLTERESGIANVEFASDL------SRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDE 174 (621)
Q Consensus 101 d~~v~iw~~~~~~~~~~~~~~~~~~------~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (621)
+++|.+||..++. ....+ .........+.+. +++++++...++.|.+||..+++.+
T Consensus 16 ~~~l~~~d~~t~~-------~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~---------- 77 (328)
T 3dsm_A 16 NATLSYYDPATCE-------VENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV---------- 77 (328)
T ss_dssp CBEEEEEETTTTE-------EECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE----------
T ss_pred CceEEEEECCCCE-------EhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE----------
Confidence 6779999988763 22211 0122345677774 3455666667899999999988754
Q ss_pred ccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCC-----cceEEEEEcCCCCEE
Q psy15549 175 ENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHK-----KFVQGVAWDPKNQYV 249 (621)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~l~~sp~~~~l 249 (621)
..+. .......++++++++.+++...++.|.+||+.+++....+.... .....+++ ++..|
T Consensus 78 -----------~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~l 143 (328)
T 3dsm_A 78 -----------GRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYV 143 (328)
T ss_dssp -----------EEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEE
T ss_pred -----------EEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEE
Confidence 2232 34668899999998544444478999999999998877665333 14567777 35555
Q ss_pred EEEe--CCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCC
Q psy15549 250 ATLS--SDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDST 327 (621)
Q Consensus 250 ~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~ 327 (621)
+++. .++.|.+||+.+++.+..+.... ....++++|+|++++++.+...
T Consensus 144 yv~~~~~~~~v~viD~~t~~~~~~i~~g~------------------------~p~~i~~~~dG~l~v~~~~~~~----- 194 (328)
T 3dsm_A 144 YVNCWSYQNRILKIDTETDKVVDELTIGI------------------------QPTSLVMDKYNKMWTITDGGYE----- 194 (328)
T ss_dssp EEEECTTCCEEEEEETTTTEEEEEEECSS------------------------CBCCCEECTTSEEEEEBCCBCT-----
T ss_pred EEEcCCCCCEEEEEECCCCeEEEEEEcCC------------------------CccceEEcCCCCEEEEECCCcc-----
Confidence 5555 48899999999998877664211 1257899999987666542100
Q ss_pred CcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEE
Q psy15549 328 RKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFI 407 (621)
Q Consensus 328 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 407 (621)
-..| ....+.|.++|..+++....+
T Consensus 195 ~~~~-------------------------------------------------------~~~~~~v~~id~~t~~v~~~~ 219 (328)
T 3dsm_A 195 GSPY-------------------------------------------------------GYEAPSLYRIDAETFTVEKQF 219 (328)
T ss_dssp TCSS-------------------------------------------------------CBCCCEEEEEETTTTEEEEEE
T ss_pred CCcc-------------------------------------------------------ccCCceEEEEECCCCeEEEEE
Confidence 0000 012478999999998877666
Q ss_pred ecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcc-cCC-CCCcccccCCCC-CCCCcccC----CCcccHHH
Q psy15549 408 ANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIP-YVP-PSGEESKENDPT-KGEPVRSE----DKPRSAEQ 480 (621)
Q Consensus 408 ~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~-~~~-~~~~~~~~~~~~-~~~~~~s~----~~~~~~~~ 480 (621)
..........++|+||+++|.++.. .|.+||..++++... +.. .......+.+.| ++...++. ..++.|.+
T Consensus 220 ~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v 297 (328)
T 3dsm_A 220 KFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR 297 (328)
T ss_dssp ECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEE
T ss_pred ecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEE
Confidence 4322347899999999999888755 899999998886432 111 123445567777 45555554 56888999
Q ss_pred hcccCccccccc
Q psy15549 481 AKGEGKVLGEKQ 492 (621)
Q Consensus 481 w~~~~~~~~~~~ 492 (621)
|+..++.+.++.
T Consensus 298 ~d~~g~~~~~i~ 309 (328)
T 3dsm_A 298 YSPQGKLIDEFY 309 (328)
T ss_dssp ECTTCCEEEEEE
T ss_pred ECCCCCEEEEEE
Confidence 998888776665
No 191
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.60 E-value=8.7e-14 Score=152.20 Aligned_cols=161 Identities=14% Similarity=0.043 Sum_probs=107.5
Q ss_pred cccCcEEEEEEccCCCEEEEEcC------CceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCc
Q psy15549 79 RHQKAVNVVRFSPNGELLASGDD------VGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDEST 152 (621)
Q Consensus 79 ~h~~~V~~l~~spdg~~las~~d------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~ 152 (621)
+|...+..++|||||++||.+.+ ..|++|++.++. .... ..+...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~-------~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~ 230 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK-------PLAD-ELKWVKFSGLAWLGN-DALLYSRFAEP 230 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC-------EEEE-EEEEEESCCCEESTT-SEEEEEECCCC
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-------CCCc-cCCCceeccEEEECC-CEEEEEEecCc
Confidence 34457889999999999998762 248999988763 1111 112222357899999 98988876654
Q ss_pred --------------EEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCC----
Q psy15549 153 --------------IIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDN---- 214 (621)
Q Consensus 153 --------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg---- 214 (621)
|++|++.++..... +......+...+..+.|+|||++|+..+.++
T Consensus 231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~-----------------lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 293 (741)
T 1yr2_A 231 KEGQAFQALNYNQTVWLHRLGTPQSADQ-----------------PVFATPELPKRGHGASVSSDGRWVVITSSEGTDPV 293 (741)
T ss_dssp --------CCCCCEEEEEETTSCGGGCE-----------------EEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSC
T ss_pred ccccccccCCCCCEEEEEECCCCchhCE-----------------EEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCc
Confidence 88898876642110 0111223444588999999999988877543
Q ss_pred -eEEEEECCCC--cEEEEeccCCcceEEEEEcCCCCEEEEEeCC----CcEEEEEccCc
Q psy15549 215 -TAIMWDVHKG--KNLGILTEHKKFVQGVAWDPKNQYVATLSSD----RSLRTYSIQSK 266 (621)
Q Consensus 215 -~i~vwd~~~~--~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~d----g~i~iwd~~~~ 266 (621)
.|++||+.++ ++...+..+...+... ++|+|+.|+..+.+ +.|.+||+.++
T Consensus 294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 294 NTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp CEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred ceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 8999999877 4144554555555555 34899998887764 45889998764
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.59 E-value=8.3e-14 Score=136.31 Aligned_cols=247 Identities=11% Similarity=-0.004 Sum_probs=162.9
Q ss_pred CcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccC
Q psy15549 82 KAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKT 160 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~ 160 (621)
.....+++.. ++++++.. ++.|.+||..++ +.+..+. .......++++++++++++...++.|.+||..+
T Consensus 44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~-------~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t 114 (328)
T 3dsm_A 44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTF-------KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT 114 (328)
T ss_dssp SCEEEEEEET-TEEEEEEGGGTEEEEEETTTC-------CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT
T ss_pred ccceEEEEEC-CEEEEEEcCCCEEEEEECccc-------EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 4467777743 44444444 788999999876 4444443 345688999999885545544789999999988
Q ss_pred CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe--CCCeEEEEECCCCcEEEEeccCCcceE
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS--VDNTAIMWDVHKGKNLGILTEHKKFVQ 238 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~ 238 (621)
++....++.. ...+.......+++ ++..|+++. .++.|.+||+.+++.+..+... ....
T Consensus 115 ~~~~~~i~~g----------------~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~ 175 (328)
T 3dsm_A 115 YEITGYIECP----------------DMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPT 175 (328)
T ss_dssp TEEEEEEECT----------------TCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBC
T ss_pred CeEEEEEEcC----------------CccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCcc
Confidence 7643211000 00011113456666 344555554 4889999999999888777543 3456
Q ss_pred EEEEcCCCCEEEEEeCC----------CcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeec
Q psy15549 239 GVAWDPKNQYVATLSSD----------RSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308 (621)
Q Consensus 239 ~l~~sp~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 308 (621)
.++++|+|++++++..+ +.|.++|..+++....+.... ......++|+
T Consensus 176 ~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~----------------------g~~p~~la~~ 233 (328)
T 3dsm_A 176 SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL----------------------GDWPSEVQLN 233 (328)
T ss_dssp CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT----------------------TCCCEEEEEC
T ss_pred ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC----------------------CCCceeEEEe
Confidence 88999999877766554 789999999888766553210 1134789999
Q ss_pred CCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEE
Q psy15549 309 PDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVA 388 (621)
Q Consensus 309 pdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (621)
|++++|+++.
T Consensus 234 ~d~~~lyv~~---------------------------------------------------------------------- 243 (328)
T 3dsm_A 234 GTRDTLYWIN---------------------------------------------------------------------- 243 (328)
T ss_dssp TTSCEEEEES----------------------------------------------------------------------
T ss_pred cCCCEEEEEc----------------------------------------------------------------------
Confidence 9998887754
Q ss_pred cCCcEEEEeCCCCceeEE-EecccccceEEEEEcCC-CCeEEEE----eCCCcEEEEEecCCcCCcccC
Q psy15549 389 TENNILLYDTQHASPFAF-IANIHYTKLTDITWSSD-GKVLIAS----STDGYCSIISFGDNEIGIPYV 451 (621)
Q Consensus 389 ~dg~i~iwd~~~~~~~~~-~~~~h~~~v~~~~~spd-g~~l~s~----s~dg~i~iw~~~~~~~~~~~~ 451 (621)
+.|++||..+++.... +...+......++++|+ +..+++. ..++.|.+|+.. ++++..+.
T Consensus 244 --~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 244 --NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp --SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred --cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 1567777777664321 11112456889999994 5555555 578999999988 77766653
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.59 E-value=3.8e-12 Score=126.21 Aligned_cols=295 Identities=10% Similarity=-0.047 Sum_probs=178.1
Q ss_pred EeccccccCCcceEEEEecC--Cc---eEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCC
Q psy15549 19 VDIQLKQEKDNCYRIVTGGA--DS---HVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNG 93 (621)
Q Consensus 19 l~~spd~~~~~~~~l~tg~~--dg---~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 93 (621)
+...|+++ ++++... .. .|. ++|..+++.. ..+.....+ .++|||||
T Consensus 26 ~~~~~~~~-----~~yv~~~~~~~~~~~v~--------------v~D~~t~~~~-------~~i~~g~~p--~i~~spDg 77 (373)
T 2mad_H 26 EAPGADGR-----RSYINLPAHHSAIIQQW--------------VLDAGSGSIL-------GHVNGGFLP--NPVAAHSG 77 (373)
T ss_pred ccCCCCCC-----EEEEeCCcccCCccEEE--------------EEECCCCeEE-------EEecCCCCC--CeEECCCC
Confidence 34557776 6666553 32 566 7777655432 123332333 89999999
Q ss_pred CEEEEEc-----------CCceEEEEeccCccccccceecccccc-------cCCCeEEEEECCCCCEEEEEeC--CCcE
Q psy15549 94 ELLASGD-----------DVGKEIWYLTERESGIANVEFASDLSR-------HQKAVNVVRFSPNGELLASGDD--ESTI 153 (621)
Q Consensus 94 ~~las~~-----------d~~v~iw~~~~~~~~~~~~~~~~~~~~-------h~~~V~~i~~sp~g~~l~s~s~--dg~i 153 (621)
++|+++. ++.|.+||..... ....+.- +......++|+|||++|+++.. ++.|
T Consensus 78 ~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~-------~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v 150 (373)
T 2mad_H 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFL-------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV 150 (373)
T ss_pred CEEEEEeccccccccCCCCCeEEEEECCCCc-------EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeE
Confidence 9998874 4568899987542 2222111 0123457999999999998874 4789
Q ss_pred EEEEccCCCCCCC-CCCCCcccccccccceeeeeeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEec
Q psy15549 154 IVWKQKTDQDLPE-FPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTS-THLISGSVDNTAIMWDVHKGKNLGILT 231 (621)
Q Consensus 154 ~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~-~~l~s~~~dg~i~vwd~~~~~~~~~~~ 231 (621)
.++| .+++.+.. + . ... ++.+.|++ +.+++.+.||.+.++|. +++......
T Consensus 151 ~viD-~t~~~~~~~i---------------------~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~ 203 (373)
T 2mad_H 151 GLVV-QGGSSDDQLL---------------------S-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL 203 (373)
T ss_pred EEEE-CCCCEEeEEc---------------------C-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence 9999 88875422 2 1 111 24455555 45566778999999999 887663321
Q ss_pred -----cCCcc-eEEEEEcCCCCEEEEEeCCCcEEEEEccCcee--eeecccCCCCCCCccccccccccccccCCccccee
Q psy15549 232 -----EHKKF-VQGVAWDPKNQYVATLSSDRSLRTYSIQSKKV--ISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFR 303 (621)
Q Consensus 232 -----~~~~~-v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 303 (621)
....+ .....+.+++..++..+..+.+.+.|+.+... +..+........ ..........
T Consensus 204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~-------------~~~~~p~g~~ 270 (373)
T 2mad_H 204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK-------------ADTWRPGGWQ 270 (373)
T ss_pred ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccc-------------ccceecCceE
Confidence 11112 12345677766655556788999999875432 221110000000 0000011123
Q ss_pred eeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcE
Q psy15549 304 RLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRI 383 (621)
Q Consensus 304 ~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (621)
.++++||++.++++.. .+. -+. +
T Consensus 271 ~~~~s~d~~~lyV~~~-----~~~--~~~-------------------~------------------------------- 293 (373)
T 2mad_H 271 QVAYLKSSDGIYLLTS-----EQS--AWK-------------------L------------------------------- 293 (373)
T ss_pred eEEECCCCCEEEEEec-----cCC--ccc-------------------c-------------------------------
Confidence 3566666666655431 000 000 0
Q ss_pred EEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCC-eEEEEe-CCCcEEEEEecCCcCCccc
Q psy15549 384 VIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGK-VLIASS-TDGYCSIISFGDNEIGIPY 450 (621)
Q Consensus 384 l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~s-~dg~i~iw~~~~~~~~~~~ 450 (621)
....+.|.++|..+++.+..+..++ ...+++|+|||+ +|+++. .++.|.+||+.+++....+
T Consensus 294 ---~~~~~~V~VID~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 294 ---HAAAKEVTSVTGLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ---cCCCCeEEEEECCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 0024689999999999998886433 688999999999 777776 5899999999999887663
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=1.9e-12 Score=124.92 Aligned_cols=269 Identities=13% Similarity=0.010 Sum_probs=175.1
Q ss_pred ccccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q psy15549 78 SRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVW 156 (621)
Q Consensus 78 ~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vw 156 (621)
..+...+.+++++++|+++++.. ++.|.+|+.. +.. .. ..+..+...+.+++++++|.++++...++.|..|
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-----~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 83 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-----TE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRI 83 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-----EE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-----EE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEE
Confidence 34456799999999999888776 6789999876 321 11 1122244678999999999988887778889999
Q ss_pred EccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE-eccCCc
Q psy15549 157 KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGI-LTEHKK 235 (621)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~ 235 (621)
+.. +. .. ...+......+.++++.+++.++++...++.|.+||. +++.... ......
T Consensus 84 ~~~-g~-~~-------------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~ 141 (299)
T 2z2n_A 84 TKK-GI-IK-------------------EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGS 141 (299)
T ss_dssp CTT-SC-EE-------------------EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTC
T ss_pred CCC-Cc-EE-------------------EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCC
Confidence 875 22 10 0112234567899999999988887777889999998 5554432 233455
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEE
Q psy15549 236 FVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLI 315 (621)
Q Consensus 236 ~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~ 315 (621)
.+.+++++++|+.+++...++.|..||. +++...... ......+.+++++++|.+++
T Consensus 142 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~----------------------~~~~~~~~~i~~~~~g~l~v 198 (299)
T 2z2n_A 142 YPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKI----------------------PTPASGPVGITKGNDDALWF 198 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC----------------------SSTTCCEEEEEECTTSSEEE
T ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeC----------------------CCCCCcceeEEECCCCCEEE
Confidence 6889999999988776666788999998 655432110 00112346777887776544
Q ss_pred eccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEE
Q psy15549 316 APSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILL 395 (621)
Q Consensus 316 ~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 395 (621)
+.. .++.|.+
T Consensus 199 ~~~----------------------------------------------------------------------~~~~i~~ 208 (299)
T 2z2n_A 199 VEI----------------------------------------------------------------------IGNKIGR 208 (299)
T ss_dssp EET----------------------------------------------------------------------TTTEEEE
T ss_pred Ecc----------------------------------------------------------------------CCceEEE
Confidence 432 2456777
Q ss_pred EeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcc-cCCCCCcccccCCCCCCCCccc
Q psy15549 396 YDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIP-YVPPSGEESKENDPTKGEPVRS 471 (621)
Q Consensus 396 wd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s 471 (621)
||. +++........+...+.+++++++|+.+++...++.|..|+. ++.+... +.........+.+ +++...++
T Consensus 209 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~ 282 (299)
T 2z2n_A 209 ITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFA 282 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEE
T ss_pred ECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEE
Confidence 777 554332212234567899999999997776667889999998 4443221 2222233344444 55554443
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=4.8e-13 Score=126.86 Aligned_cols=222 Identities=14% Similarity=0.102 Sum_probs=156.6
Q ss_pred EEEEecCCceEEeeeccCccccccceeEEeccccccccceeecccccccc-CcEEEEEEccCCCEEEEEcCCceEEEEec
Q psy15549 32 RIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQ-KAVNVVRFSPNGELLASGDDVGKEIWYLT 110 (621)
Q Consensus 32 ~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~d~~v~iw~~~ 110 (621)
+|++++.++.|. +||..+++.... +..+. ..+.++.++|+|++|+ +.++.|..|+.
T Consensus 7 ~lv~~~~~~~v~--------------~~d~~tG~~~w~-------~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~- 63 (276)
T 3no2_A 7 LLVGGSGWNKIA--------------IINKDTKEIVWE-------YPLEKGWECNSVAATKAGEILF-SYSKGAKMITR- 63 (276)
T ss_dssp EEEECTTCSEEE--------------EEETTTTEEEEE-------EECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-
T ss_pred EEEeeCCCCEEE--------------EEECCCCeEEEE-------eCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-
Confidence 999999999999 666655544322 33333 4688999999999999 45777888887
Q ss_pred cCccccccceeccccccc-CCCeEEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeee
Q psy15549 111 ERESGIANVEFASDLSRH-QKAVNVVRFSPNGELLASGDD-ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188 (621)
Q Consensus 111 ~~~~~~~~~~~~~~~~~h-~~~V~~i~~sp~g~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (621)
.+ +.+..+..+ ...+.++.+.++|++|++.+. ++.|..+|. +++.+..+. .....
T Consensus 64 ~G-------~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~---------------~~~~~ 120 (276)
T 3no2_A 64 DG-------RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTE---------------FETGI 120 (276)
T ss_dssp TS-------CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEE---------------ECCSC
T ss_pred CC-------CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEe---------------ccCCC
Confidence 44 344444443 346888999999999999887 777777775 444332110 00000
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCcee
Q psy15549 189 RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKV 268 (621)
Q Consensus 189 ~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 268 (621)
..+......+++.++|+++++...++.|..||.. |+.+..+... ..+.++.+.++|+.+++++.++.|..+|..+++.
T Consensus 121 ~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 121 ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred CcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 1222234566789999999999999999999987 9999888654 3456778899999999888888999999999999
Q ss_pred eeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecc
Q psy15549 269 ISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPS 318 (621)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s 318 (621)
+.++.....+- ..-..+..++..++|..+++..
T Consensus 199 ~w~~~~~~~~~-----------------~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 199 VRRVNANDIEG-----------------VQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEEGGGSBS-----------------CCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEecCCCCCC-----------------ccccccccceEcCCCCEEEEec
Confidence 88775321110 0012357788888888887754
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.58 E-value=3.4e-13 Score=128.12 Aligned_cols=237 Identities=8% Similarity=0.016 Sum_probs=160.0
Q ss_pred CeEEEeccccccCCcceEEE-EecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCC
Q psy15549 15 PVLSVDIQLKQEKDNCYRIV-TGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNG 93 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~-tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 93 (621)
...++++++++. +++ +...++.|. +|+......... ...+...+.+++++++|
T Consensus 25 ~p~~i~~~~~g~-----l~v~~~~~~~~i~--------------~~~~~~~~~~~~-------~~~~~~~p~~i~~~~~g 78 (270)
T 1rwi_B 25 SPSGVAVDSAGN-----VYVTSEGMYGRVV--------------KLATGSTGTTVL-------PFNGLYQPQGLAVDGAG 78 (270)
T ss_dssp CEEEEEECTTCC-----EEEEECSSSCEEE--------------EECC-----EEC-------CCCSCCSCCCEEECTTC
T ss_pred CccceEECCCCC-----EEEEccCCCCcEE--------------EecCCCcccceE-------eeCCcCCcceeEECCCC
Confidence 678999999997 777 557788888 666543322110 12233567889999999
Q ss_pred CEEEEEcCCceEEEEeccCccccccceeccccc-ccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCc
Q psy15549 94 ELLASGDDVGKEIWYLTERESGIANVEFASDLS-RHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNL 172 (621)
Q Consensus 94 ~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 172 (621)
+++++..++.|.+|+..... ...+. .....+..++++++|+++++...++.|.+|+..+....
T Consensus 79 ~l~v~~~~~~i~~~d~~~~~--------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-------- 142 (270)
T 1rwi_B 79 TVYVTDFNNRVVTLAAGSNN--------QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-------- 142 (270)
T ss_dssp CEEEEETTTEEEEECTTCSC--------CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE--------
T ss_pred CEEEEcCCCEEEEEeCCCce--------EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE--------
Confidence 97777667778888866531 11111 22356889999999998887777889999975443321
Q ss_pred ccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEE
Q psy15549 173 DEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATL 252 (621)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 252 (621)
.........+.+++++++|+++++...++.|.+||............+...+.+++++++|..+++.
T Consensus 143 -------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~ 209 (270)
T 1rwi_B 143 -------------VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTE 209 (270)
T ss_dssp -------------ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEE
T ss_pred -------------eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEE
Confidence 1112233457889999999977777778899999987766544333344668899999999777766
Q ss_pred eCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCccee
Q psy15549 253 SSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPIS 332 (621)
Q Consensus 253 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~ 332 (621)
..++.|.+|+........... .....+.+++++++|+.+++.. .++.+.+++
T Consensus 210 ~~~~~v~~~~~~~~~~~~~~~-----------------------~~~~~p~~i~~~~~g~l~v~~~-----~~~~v~~~~ 261 (270)
T 1rwi_B 210 HNTNQVVKLLAGSTTSTVLPF-----------------------TGLNTPLAVAVDSDRTVYVADR-----GNDRVVKLT 261 (270)
T ss_dssp TTTSCEEEECTTCSCCEECCC-----------------------CSCSCEEEEEECTTCCEEEEEG-----GGTEEEEEC
T ss_pred CCCCcEEEEcCCCCcceeecc-----------------------CCCCCceeEEECCCCCEEEEEC-----CCCEEEEEc
Confidence 678899999986543322110 0112458899999998777666 567777776
Q ss_pred ee
Q psy15549 333 VT 334 (621)
Q Consensus 333 ~~ 334 (621)
..
T Consensus 262 ~~ 263 (270)
T 1rwi_B 262 SL 263 (270)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.57 E-value=1.2e-13 Score=151.10 Aligned_cols=285 Identities=13% Similarity=0.081 Sum_probs=179.0
Q ss_pred EccCCCEEEEEc-CCc---eEEEEeccC---ccccccceec-ccccccCCCeEEEEECCCCCEEEEEeCC-----CcEEE
Q psy15549 89 FSPNGELLASGD-DVG---KEIWYLTER---ESGIANVEFA-SDLSRHQKAVNVVRFSPNGELLASGDDE-----STIIV 155 (621)
Q Consensus 89 ~spdg~~las~~-d~~---v~iw~~~~~---~~~~~~~~~~-~~~~~h~~~V~~i~~sp~g~~l~s~s~d-----g~i~v 155 (621)
.+|+|++++... +++ ..+|..... +.....+.-. ..-.+|...+..++|||||++||.++.+ ..|++
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 348999988765 333 677877643 2111111000 1112344578899999999999887643 36999
Q ss_pred EEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCe--------------EEEEEC
Q psy15549 156 WKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNT--------------AIMWDV 221 (621)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~--------------i~vwd~ 221 (621)
||+.+++.+. ...+...+..++|+|| +.|+.++.++. |++|++
T Consensus 194 ~dl~tg~~~~----------------------~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~l 250 (741)
T 1yr2_A 194 VGVADGKPLA----------------------DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRL 250 (741)
T ss_dssp EETTTCCEEE----------------------EEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEET
T ss_pred EECCCCCCCC----------------------ccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEEC
Confidence 9999887421 1111112357899999 98988876554 899999
Q ss_pred CCCc----EEEEeccCCcceEEEEEcCCCCEEEEEeCCC-----cEEEEEccCcee--eeecccCCCCCCCccccccccc
Q psy15549 222 HKGK----NLGILTEHKKFVQGVAWDPKNQYVATLSSDR-----SLRTYSIQSKKV--ISRACRSKLPVDSSHELFDKVV 290 (621)
Q Consensus 222 ~~~~----~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg-----~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 290 (621)
.++. .+.....+...+..+.|+|||++|+..+.++ .|++||+.++.. ...+....
T Consensus 251 gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-------------- 316 (741)
T 1yr2_A 251 GTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL-------------- 316 (741)
T ss_dssp TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS--------------
T ss_pred CCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC--------------
Confidence 8765 2222223334588999999999998877554 799999877621 22221110
Q ss_pred cccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCC
Q psy15549 291 PLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKP 370 (621)
Q Consensus 291 ~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (621)
...... ++|+|+.|+..+. +
T Consensus 317 ---------~~~~~~-~~~dg~~l~~~s~-----~--------------------------------------------- 336 (741)
T 1yr2_A 317 ---------KAQWDF-VDGVGDQLWFVSG-----D--------------------------------------------- 336 (741)
T ss_dssp ---------SSCEEE-EEEETTEEEEEEC-----T---------------------------------------------
T ss_pred ---------CceEEE-EeccCCEEEEEEC-----C---------------------------------------------
Confidence 011222 3477777766541 0
Q ss_pred CCCCCCccCCCcEEEEEEcCCcEEEEeCCCC-ceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEec-CCcCCc
Q psy15549 371 SDDKPLFKLPYRIVIAVATENNILLYDTQHA-SPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFG-DNEIGI 448 (621)
Q Consensus 371 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~-~~~~~~ 448 (621)
.+.++.|++||+.++ .....+...+...+.+++|+ ++.++++...||..+||.++ ++....
T Consensus 337 ----------------~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 399 (741)
T 1yr2_A 337 ----------------GAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG 399 (741)
T ss_dssp ----------------TCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred ----------------CCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence 012456888998775 23344434455567788887 56678888899998888776 455445
Q ss_pred ccCCC-CCcccccCCCCCCCCcc----cCCCcccHHHhcccCcc
Q psy15549 449 PYVPP-SGEESKENDPTKGEPVR----SEDKPRSAEQAKGEGKV 487 (621)
Q Consensus 449 ~~~~~-~~~~~~~~~~~~~~~~~----s~~~~~~~~~w~~~~~~ 487 (621)
.+..+ .+.+..+.+++++..++ +...++.++.|++....
T Consensus 400 ~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 400 AVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp ECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 55543 44566677888888776 66788999999876543
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.56 E-value=2e-11 Score=117.71 Aligned_cols=199 Identities=8% Similarity=-0.054 Sum_probs=137.6
Q ss_pred CCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccC
Q psy15549 13 RDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN 92 (621)
Q Consensus 13 ~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 92 (621)
...+.+|++++++. ++++...++.|. +|+.. +.... + .+..+...+.++++.++
T Consensus 19 ~~~p~~i~~d~~g~-----l~v~~~~~~~v~--------------~~~~~-~~~~~--~----~~~~~~~~~~~i~~~~~ 72 (300)
T 2qc5_A 19 DSGPYGITSSEDGK-----VWFTQHKANKIS--------------SLDQS-GRIKE--F----EVPTPDAKVMCLIVSSL 72 (300)
T ss_dssp TCCEEEEEECTTSC-----EEEEETTTTEEE--------------EECTT-SCEEE--E----ECSSTTCCEEEEEECTT
T ss_pred CCCcceeeECCCCC-----EEEEcCCCCeEE--------------EECCC-CceEE--E----ECCCCCCcceeEEECCC
Confidence 45789999999997 777777788888 66654 22111 0 12233467899999999
Q ss_pred CCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCC
Q psy15549 93 GELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSN 171 (621)
Q Consensus 93 g~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 171 (621)
|+++++.. ++.|..|+.. +.. . ...+......+.++++.++|+++++...++.|..|+.. ++..
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~-----~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~------- 137 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGF-----T-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY------- 137 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCE-----E-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-------
T ss_pred CCEEEEecCCCeEEEECCC-CCe-----E-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-------
Confidence 99888776 6678888766 321 1 11122234578999999999888877778889999876 4321
Q ss_pred cccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE-eccCCcceEEEEEcCCCCEEE
Q psy15549 172 LDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGI-LTEHKKFVQGVAWDPKNQYVA 250 (621)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~ 250 (621)
...+......+.++++.++++++++...++.|..||. +++.... ...+...+.+++++++|+.++
T Consensus 138 -------------~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v 203 (300)
T 2qc5_A 138 -------------EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWF 203 (300)
T ss_dssp -------------EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred -------------EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEE
Confidence 0112234567899999999997766666789999998 5654432 223445688999999998777
Q ss_pred EEeCCCcEEEEEccCce
Q psy15549 251 TLSSDRSLRTYSIQSKK 267 (621)
Q Consensus 251 s~~~dg~i~iwd~~~~~ 267 (621)
+....+.|.+|+. +++
T Consensus 204 ~~~~~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 204 VEIMGNKIGRITT-TGE 219 (300)
T ss_dssp EETTTTEEEEECT-TCC
T ss_pred EccCCCEEEEEcC-CCc
Confidence 6656778999998 444
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.54 E-value=1.9e-12 Score=122.80 Aligned_cols=231 Identities=12% Similarity=0.096 Sum_probs=161.5
Q ss_pred CCCEEEEEc-CCceEEEEeccCccccccceecccccccC-CCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q psy15549 92 NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQ-KAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPS 169 (621)
Q Consensus 92 dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~-~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 169 (621)
.+++|++++ ++.|.+||..++ +.+..+..+. ..+.++.++|+|++|+ +.++.|..||. +++.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG-------~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~----- 68 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK-------EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGREL----- 68 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT-------EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEE-----
T ss_pred CCcEEEeeCCCCEEEEEECCCC-------eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEE-----
Confidence 457788877 888999998777 5566666655 4688999999999888 34678999998 66643
Q ss_pred CCcccccccccceeeeeeecC-CCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCcEEEEecc------CCcceEEEE
Q psy15549 170 SNLDEENVNKEHWIVTKILRG-HLEDVYDISWSPTSTHLISGSV-DNTAIMWDVHKGKNLGILTE------HKKFVQGVA 241 (621)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~------~~~~v~~l~ 241 (621)
..+.. ....+.++.+.++|+++++.+. ++.|..+|. +|+.+..+.. +......++
T Consensus 69 ----------------W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 69 ----------------WNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp ----------------EEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred ----------------EEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence 22222 2346889999999999999887 778888885 7877766642 222455677
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccc
Q psy15549 242 WDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCL 321 (621)
Q Consensus 242 ~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~ 321 (621)
+.++|+++++...++.|.+||.. ++.+..+.... ...++.+.++|+.+++..
T Consensus 132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~------------------------~~~~~~~~~~g~~~v~~~--- 183 (276)
T 3no2_A 132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG------------------------TPFSSAFLDNGDCLVACG--- 183 (276)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS------------------------CCCEEEECTTSCEEEECB---
T ss_pred ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC------------------------CccceeEcCCCCEEEEeC---
Confidence 89999999999999999999997 88877764221 123455556666555433
Q ss_pred cCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCC
Q psy15549 322 ENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHA 401 (621)
Q Consensus 322 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 401 (621)
.++.|..+|..++
T Consensus 184 -------------------------------------------------------------------~~~~v~~~d~~tG 196 (276)
T 3no2_A 184 -------------------------------------------------------------------DAHCFVQLNLESN 196 (276)
T ss_dssp -------------------------------------------------------------------TTSEEEEECTTTC
T ss_pred -------------------------------------------------------------------CCCeEEEEeCcCC
Confidence 4567888888888
Q ss_pred ceeEEEecc-----cccceEEEEEcCCCCeEEEEeCC--------CcEEEEEec-CCcCCcc
Q psy15549 402 SPFAFIANI-----HYTKLTDITWSSDGKVLIASSTD--------GYCSIISFG-DNEIGIP 449 (621)
Q Consensus 402 ~~~~~~~~~-----h~~~v~~~~~spdg~~l~s~s~d--------g~i~iw~~~-~~~~~~~ 449 (621)
+.+..+... ....+..++..++|..+++.... +..+++.+. +|+++-.
T Consensus 197 ~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~ 258 (276)
T 3no2_A 197 RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQ 258 (276)
T ss_dssp CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEE
T ss_pred cEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEE
Confidence 877777421 11237888899999888876311 234566663 4554333
No 200
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.53 E-value=3.1e-11 Score=125.77 Aligned_cols=300 Identities=13% Similarity=0.017 Sum_probs=188.2
Q ss_pred CCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEec--cccccccceeeccccccccCcEEEEEEc-
Q psy15549 14 DPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLT--ERESGIANVEFASDLSRHQKAVNVVRFS- 90 (621)
Q Consensus 14 ~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~--~~~~~~~~~~~~~~~~~h~~~V~~l~~s- 90 (621)
..+..++|+|||+ +|++++.++.|. +||+. +.+.. ..+... .....++|+
T Consensus 197 ~~p~~v~~SpDGr-----~lyv~~~dg~V~--------------viD~~~~t~~~v-------~~i~~G-~~P~~ia~s~ 249 (567)
T 1qks_A 197 YAVHISRLSASGR-----YLFVIGRDGKVN--------------MIDLWMKEPTTV-------AEIKIG-SEARSIETSK 249 (567)
T ss_dssp SCEEEEEECTTSC-----EEEEEETTSEEE--------------EEETTSSSCCEE-------EEEECC-SEEEEEEECC
T ss_pred CCccceEECCCCC-----EEEEEcCCCeEE--------------EEECCCCCCcEe-------EEEecC-CCCceeEEcc
Confidence 3577999999998 999999999999 77764 32221 123322 245789999
Q ss_pred ---cCCCEEEEEc--CCceEEEEeccCccccccceeccccc----------ccCC-CeEEEEECCCCC-EEEEEeCCCcE
Q psy15549 91 ---PNGELLASGD--DVGKEIWYLTERESGIANVEFASDLS----------RHQK-AVNVVRFSPNGE-LLASGDDESTI 153 (621)
Q Consensus 91 ---pdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~----------~h~~-~V~~i~~sp~g~-~l~s~s~dg~i 153 (621)
|||++++++. .+.+.++|..+. +.+..+. .|.. .+..+.+++++. +++....+|.|
T Consensus 250 ~~~pDGk~l~v~n~~~~~v~ViD~~t~-------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 250 MEGWEDKYAIAGAYWPPQYVIMDGETL-------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp STTCTTTEEEEEEEETTEEEEEETTTC-------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ccCCCCCEEEEEEccCCeEEEEECCCC-------cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 6999999877 788999997654 2222221 1223 678889998766 44555677999
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCcEEEEecc
Q psy15549 154 IVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS-VDNTAIMWDVHKGKNLGILTE 232 (621)
Q Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 232 (621)
.++|......+. ............+.|+|++++|+++. .++.|.++|+.+++.+..+..
T Consensus 323 ~~vd~~~~~~~~--------------------v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 323 LLVDYTDLNNLK--------------------TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp EEEETTCSSEEE--------------------EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EEEecCCCccce--------------------eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence 999987654210 11112344577899999999987766 478999999999987766643
Q ss_pred -----CCcceEEEEEcCCCCEEE-EEe-CCCcEEEEEccC-------ceeeeecccCCCCCCCccccccccccccccCCc
Q psy15549 233 -----HKKFVQGVAWDPKNQYVA-TLS-SDRSLRTYSIQS-------KKVISRACRSKLPVDSSHELFDKVVPLFHDDTM 298 (621)
Q Consensus 233 -----~~~~v~~l~~sp~~~~l~-s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (621)
|.+.-..+ ++|++..+. +.. .++.|.++|..+ .+.++.+....
T Consensus 383 gg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g---------------------- 439 (567)
T 1qks_A 383 GGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG---------------------- 439 (567)
T ss_dssp SSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC----------------------
T ss_pred cCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC----------------------
Confidence 32212122 588755544 443 468999999987 44455443211
Q ss_pred ccceeeeeecCCCCeEEeccccccC--CCCCCcceeeeeeeeecccCCCceec--------CCcccceeeeeccceeeec
Q psy15549 299 KSFFRRLTFSPDGQLLIAPSGCLEN--SDSTRKPISVTHVFTRACLNKPAVCL--------PSLQYYSVAVKCCPVLFEL 368 (621)
Q Consensus 299 ~~~i~~~~~spdg~~l~~~s~~~~~--~d~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 368 (621)
..-..+..+|+++++.+....... ...++.++++...... ........+ ......+..+.|+|
T Consensus 440 -~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 512 (567)
T 1qks_A 440 -GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGD-GSDPEFKTLPIAEWAGITEGQPRVVQGEFNK----- 512 (567)
T ss_dssp -SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCS-SSCCCEEEECHHHHHTCCSSCCEEEEEEECT-----
T ss_pred -CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccc-ccCCCcEEeccccccccCCCCcceEeeeECC-----
Confidence 011347789999999886511000 0346677766532000 000111111 11123445555555
Q ss_pred CCCCCCCCccCCCcEEEEEEc-----CCcEEEEeCCCCceeEEEe
Q psy15549 369 KPSDDKPLFKLPYRIVIAVAT-----ENNILLYDTQHASPFAFIA 408 (621)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~ 408 (621)
+|..+.++.. ++.|.++|..+.+.+..+.
T Consensus 513 -----------~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 513 -----------DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp -----------TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred -----------CCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 6777766632 6899999999999888875
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=6.4e-12 Score=122.62 Aligned_cols=302 Identities=11% Similarity=0.024 Sum_probs=183.3
Q ss_pred EEEccCCCEEEEEc------CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe----------CC
Q psy15549 87 VRFSPNGELLASGD------DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD----------DE 150 (621)
Q Consensus 87 l~~spdg~~las~~------d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s----------~d 150 (621)
....|+++.+.+.. ++.|.++|..+. +.+..+.....+ .++++|||++++++. .+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~-------~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG-------RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT-------EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCC-------eEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCC
Confidence 34578998888764 346888888766 555555544444 499999999887765 36
Q ss_pred CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecC-----CCCCeEEEEECCCCCEEEEEeC--CCeEEEEECCC
Q psy15549 151 STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRG-----HLEDVYDISWSPTSTHLISGSV--DNTAIMWDVHK 223 (621)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~i~~spd~~~l~s~~~--dg~i~vwd~~~ 223 (621)
+.|.+||..+.+.+..++ +.. .......+.|+|||++|+++.. ++.|.++|+.+
T Consensus 109 ~~VsviD~~t~~v~~~I~-------------------v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t 169 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIE-------------------LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG 169 (386)
T ss_dssp EEEEEECTTTCCEEEEEE-------------------ETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred CEEEEEECCCCeEEEEEE-------------------CCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC
Confidence 789999999987543220 110 1224567999999999998874 68999999999
Q ss_pred CcEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccC-ceeeeecccCCCCCCCccccccccccccccCCcccce
Q psy15549 224 GKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQS-KKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFF 302 (621)
Q Consensus 224 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 302 (621)
++.+.++.... . ...+....+.+++.+.||.+.+.++.+ ++...... . .+.. .. ....
T Consensus 170 ~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~--~~~~------~~---------~~~~ 228 (386)
T 3sjl_D 170 KAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-E--VFHP------ED---------EFLI 228 (386)
T ss_dssp TEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-C--CCSC------TT---------SCBC
T ss_pred CcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-c--eecc------cc---------cccc
Confidence 99998885322 1 223333456777888899999999876 55432111 0 0000 00 0001
Q ss_pred eeeeec-CCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCC-CCCccCC
Q psy15549 303 RRLTFS-PDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDD-KPLFKLP 380 (621)
Q Consensus 303 ~~~~~s-pdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 380 (621)
....|. ++|+++++. .++.+.+.+...... ....+...+. .. .....|.| .+. ...+..+
T Consensus 229 ~~~~~~~~dG~~~~vs------~~g~V~v~d~~~~~~--~v~~~~~~~~-~~--~~~~g~~p-------~g~q~~a~~~~ 290 (386)
T 3sjl_D 229 NHPAYSQKAGRLVWPT------YTGKIHQIDLSSGDA--KFLPAVEALT-EA--ERADGWRP-------GGWQQVAYHRA 290 (386)
T ss_dssp SCCEEETTTTEEEEEB------TTSEEEEEECTTSSC--EECCCEESSC-HH--HHHTTEEE-------CSSSCEEEETT
T ss_pred ccceeEcCCCcEEEEe------CCCEEEEEECCCCcc--eeecceeccc-cc--cccccccC-------CCcceeeECCC
Confidence 223553 677655433 345555554321000 0000000000 00 00000111 000 0111224
Q ss_pred CcEEEEEEc----------CCcEEEEeCCCCceeEEEecccccceEEEEEcCCCC-eEEEE-eCCCcEEEEEecCCcCCc
Q psy15549 381 YRIVIAVAT----------ENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGK-VLIAS-STDGYCSIISFGDNEIGI 448 (621)
Q Consensus 381 ~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~-s~dg~i~iw~~~~~~~~~ 448 (621)
++.+++... .+.|.++|+.+++.+..+..++ .+.+|++++|++ +|+++ ..++.|.++|..+++.+.
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 555655542 2579999999999999987543 788999999997 66665 458999999999999988
Q ss_pred ccCCCCCcc
Q psy15549 449 PYVPPSGEE 457 (621)
Q Consensus 449 ~~~~~~~~~ 457 (621)
.+.......
T Consensus 369 ~i~~~~~p~ 377 (386)
T 3sjl_D 369 SVNQLGHGP 377 (386)
T ss_dssp EECCCCSSC
T ss_pred EecCCCCCc
Confidence 887765443
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.50 E-value=4.7e-13 Score=131.24 Aligned_cols=179 Identities=13% Similarity=0.065 Sum_probs=135.2
Q ss_pred CeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccc----cceeeccccccccCcEEEEEEc
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGI----ANVEFASDLSRHQKAVNVVRFS 90 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~----~~~~~~~~~~~h~~~V~~l~~s 90 (621)
++..+++++... ++++|+.++.+ +|++....... ...+.. ....+.. |+.|+|
T Consensus 39 ~~nlLais~~~g-----ll~a~~~~~l~---------------v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f- 95 (388)
T 1xip_A 39 SLQNLDISNSKS-----LFVAASGSKAV---------------VGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF- 95 (388)
T ss_dssp CCBCEEEETTTT-----EEEEEETTEEE---------------EEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE-
T ss_pred cccEEEEcCCCC-----EEEEeCCCEEE---------------EEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE-
Confidence 699999999998 99999998766 67655433100 001111 1224556 999999
Q ss_pred cCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCC
Q psy15549 91 PNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSS 170 (621)
Q Consensus 91 pdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 170 (621)
|+++|+++.++.|++|++.... .......|...+.++.+.+.. +++++.||.|.+||+.++...
T Consensus 96 -d~~~L~v~~~~~l~v~dv~sl~-------~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~------ 159 (388)
T 1xip_A 96 -HGDQVLVSTRNALYSLDLEELS-------EFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK------ 159 (388)
T ss_dssp -ETTEEEEEESSEEEEEESSSTT-------CEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE------
T ss_pred -CCCEEEEEcCCcEEEEEchhhh-------ccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc------
Confidence 9999999988999999998753 222344566778888887653 888999999999999977631
Q ss_pred CcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcE--EEEe------c---cCCcceEE
Q psy15549 171 NLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKN--LGIL------T---EHKKFVQG 239 (621)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~--~~~~------~---~~~~~v~~ 239 (621)
.+...|+|++|||+| ++.|..||.+++|+...+.. ..++ . +|...|.+
T Consensus 160 -------------------~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~s 218 (388)
T 1xip_A 160 -------------------QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLS 218 (388)
T ss_dssp -------------------EEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEE
T ss_pred -------------------cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEE
Confidence 144589999999999 77899999999999887774 5555 2 37788999
Q ss_pred EEEcCCCCEEEEEe
Q psy15549 240 VAWDPKNQYVATLS 253 (621)
Q Consensus 240 l~~sp~~~~l~s~~ 253 (621)
+.|.+++.+|++-.
T Consensus 219 I~wl~~~~flv~y~ 232 (388)
T 1xip_A 219 VTILSPQDFLAVFG 232 (388)
T ss_dssp EEESSSSEEEEEEE
T ss_pred EEEecCCeEEEEEc
Confidence 99999999988643
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.49 E-value=1.2e-11 Score=123.04 Aligned_cols=291 Identities=12% Similarity=0.056 Sum_probs=181.1
Q ss_pred cCCCEEEEEc--C----CceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe----------CCCcEE
Q psy15549 91 PNGELLASGD--D----VGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD----------DESTII 154 (621)
Q Consensus 91 pdg~~las~~--d----~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s----------~dg~i~ 154 (621)
++++.+++.. + +.|.++|..+. +.+..+.....+ .++++|||++|+++. .++.|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~-------~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs 152 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTG-------RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVE 152 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTT-------EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCC-------EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence 5777666654 2 57899998876 555555544455 899999999888775 367899
Q ss_pred EEEccCCCCCCCCCCCCcccccccccceeeeeeec--C---CCCCeEEEEECCCCCEEEEEeC--CCeEEEEECCCCcEE
Q psy15549 155 VWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILR--G---HLEDVYDISWSPTSTHLISGSV--DNTAIMWDVHKGKNL 227 (621)
Q Consensus 155 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~v~~i~~spd~~~l~s~~~--dg~i~vwd~~~~~~~ 227 (621)
++|..+.+.+..++ +. . .......+.|+|||++|+++.. ++.|.++|+.+++.+
T Consensus 153 viD~~t~~vv~~I~-------------------v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 153 VFDPVTFLPIADIE-------------------LPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD 213 (426)
T ss_dssp EECTTTCCEEEEEE-------------------ETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred EEECCCCcEEEEEE-------------------CCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE
Confidence 99999987643220 11 0 1233567899999999999875 578999999999988
Q ss_pred EEeccCCcceEEEEEcCCC-CEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeee
Q psy15549 228 GILTEHKKFVQGVAWDPKN-QYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLT 306 (621)
Q Consensus 228 ~~~~~~~~~v~~l~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 306 (621)
..+..... ....|++ +.+++.+.||.+.+.+..+++...... ....+ .. ......+.
T Consensus 214 ~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~~v----------------~~-~p~~~~~~ 271 (426)
T 3c75_H 214 RMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-EVFHT----------------ED-ELLINHPA 271 (426)
T ss_dssp EEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-CCCSC----------------TT-SCBCSCCE
T ss_pred EEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-eeecc----------------CC-CceeeEee
Confidence 88754221 2334443 556667788888888886655443211 00000 00 00112457
Q ss_pred ecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCC-CCCCccCCCcEEE
Q psy15549 307 FSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSD-DKPLFKLPYRIVI 385 (621)
Q Consensus 307 ~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 385 (621)
|++++..++..+ ..+.+.+.+....... ............. ...+.| .+ ....+.++++.++
T Consensus 272 ~~~dg~~~~~~s-----~~g~V~ViD~~~~~~~--v~~~~~~~~~~~i---~~g~~p-------~g~~~va~s~dg~rly 334 (426)
T 3c75_H 272 FSLRSGRLVWPT-----YTGKIFQADLTAEGAT--FRAPIEALTEAER---ADDWRP-------GGWQQTAYHRQSDRIY 334 (426)
T ss_dssp ECTTTCEEEEEB-----TTSEEEEEEECSSCEE--ECCCEESSCTTTG---GGTEEE-------CSSSCEEEEGGGTEEE
T ss_pred ecCCCCEEEEEe-----CCCcEEEEeccCCceE--Eeeeeeecccccc---cccccc-------CCceeeEEcCCCCEEE
Confidence 788888777766 4555555554211000 0000000000000 000000 00 0012223556655
Q ss_pred EEEc----------CCcEEEEeCCCCceeEEEecccccceEEEEEcCCCC-eEEEEe-CCCcEEEEEecCCcCCccc
Q psy15549 386 AVAT----------ENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGK-VLIASS-TDGYCSIISFGDNEIGIPY 450 (621)
Q Consensus 386 ~~~~----------dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~s-~dg~i~iw~~~~~~~~~~~ 450 (621)
+... .+.|.++|..+.+.+..+..+. ....++|+|||+ +|+++. .++.|.++|+.+++....+
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 5542 3579999999999999986533 588999999999 888887 5999999999999988776
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.48 E-value=6.5e-11 Score=114.09 Aligned_cols=243 Identities=12% Similarity=0.021 Sum_probs=162.1
Q ss_pred ccCcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q psy15549 80 HQKAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQ 158 (621)
Q Consensus 80 h~~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~ 158 (621)
....+.++++.++|++.++.. ++.|.+|+.. +.. .. ..+..+...+.++++.++|.++++...++.|..||.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-----~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~ 90 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-----KE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK 90 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-----EE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-----EE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence 346789999999999888775 7789999876 321 11 112233467899999999988877777788999987
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE-eccCCcce
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGI-LTEHKKFV 237 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v 237 (621)
. ++.. ..........+.++++.++++++++...++.|..||.. ++.... +......+
T Consensus 91 ~-g~~~--------------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~ 148 (300)
T 2qc5_A 91 K-GGFT--------------------EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYP 148 (300)
T ss_dssp T-SCEE--------------------EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred C-CCeE--------------------EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCc
Confidence 7 4321 01122234678999999999888877768899999987 654422 33345678
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEec
Q psy15549 238 QGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAP 317 (621)
Q Consensus 238 ~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 317 (621)
.+++++++++.+++...++.|..||. +++... +.. ......+..++++++|..+++.
T Consensus 149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~---------------------~~~~~~~~~i~~d~~g~l~v~~ 205 (300)
T 2qc5_A 149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPL---------------------PTNAAAPVGITSGNDGALWFVE 205 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC---------------------SSTTCCEEEEEECTTSSEEEEE
T ss_pred eeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeC---------------------CCCCCCcceEEECCCCCEEEEc
Confidence 89999999996666555788999988 544332 110 0011234677777777655443
Q ss_pred cccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEe
Q psy15549 318 SGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYD 397 (621)
Q Consensus 318 s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 397 (621)
. ..+.|.+||
T Consensus 206 ~----------------------------------------------------------------------~~~~i~~~~ 215 (300)
T 2qc5_A 206 I----------------------------------------------------------------------MGNKIGRIT 215 (300)
T ss_dssp T----------------------------------------------------------------------TTTEEEEEC
T ss_pred c----------------------------------------------------------------------CCCEEEEEc
Confidence 2 234566666
Q ss_pred CCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcC
Q psy15549 398 TQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEI 446 (621)
Q Consensus 398 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~ 446 (621)
. +++........+...+.+++++++|+.+++...++.|..|+. ++..
T Consensus 216 ~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 262 (300)
T 2qc5_A 216 T-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTI 262 (300)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCE
T ss_pred C-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcE
Confidence 6 333332221224467889999999997777666789999997 4443
No 205
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.48 E-value=1.5e-12 Score=127.68 Aligned_cols=188 Identities=11% Similarity=0.076 Sum_probs=138.1
Q ss_pred cEEEEEEccCCCEEEEEcCCceEEEEeccCccc----cccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q psy15549 83 AVNVVRFSPNGELLASGDDVGKEIWYLTERESG----IANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQ 158 (621)
Q Consensus 83 ~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~----~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~ 158 (621)
.++.+++++...++++|+.+++++|++...... ...+.... ...+.. |++++| ++++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999999889999997654210 00012111 223556 999999 89999999 8899999999
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceE
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQ 238 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 238 (621)
.+.... .....|...+.++.+.+. .+++++.||.|.+||+.++.... +...|+
T Consensus 114 ~sl~~~---------------------~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs 166 (388)
T 1xip_A 114 EELSEF---------------------RTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVT 166 (388)
T ss_dssp SSTTCE---------------------EEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEE
T ss_pred hhhhcc---------------------CccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCce
Confidence 887632 334556677888887754 38888999999999999887653 446799
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCcee--eeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEe
Q psy15549 239 GVAWDPKNQYVATLSSDRSLRTYSIQSKKV--ISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIA 316 (621)
Q Consensus 239 ~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~ 316 (621)
|++|||+| ++.|..||.+++|+...+.. ...+.... .+.....+...|.++.|.+++.++++
T Consensus 167 ~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp--------------~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 167 SFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPS--------------ELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCH--------------HHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCc--------------ccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999999 67799999999999887775 44442110 00000123567899999999999886
Q ss_pred cc
Q psy15549 317 PS 318 (621)
Q Consensus 317 ~s 318 (621)
-.
T Consensus 231 y~ 232 (388)
T 1xip_A 231 FG 232 (388)
T ss_dssp EE
T ss_pred Ec
Confidence 44
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.47 E-value=1.1e-11 Score=120.57 Aligned_cols=244 Identities=10% Similarity=0.090 Sum_probs=157.6
Q ss_pred CCCCeEEEeccccccCCcceEEEE-------ecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcE
Q psy15549 12 NRDPVLSVDIQLKQEKDNCYRIVT-------GGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAV 84 (621)
Q Consensus 12 h~~~v~~l~~spd~~~~~~~~l~t-------g~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V 84 (621)
.-....+++|++++. ++++ +..++.|. +|+..+++.... . .....++...+
T Consensus 16 ~~~~~~~~~~~~~g~-----l~~~~~~~~~~~~~~~~i~--------------~~d~~~g~~~~~--~-~~~~~~~~~~~ 73 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGD-----FYIVAPEVEVNGKPAGEIL--------------RIDLKTGKKTVI--C-KPEVNGYGGIP 73 (314)
T ss_dssp CCTTCEEEEECTTSC-----EEEEETTCEETTEECCEEE--------------EECTTTCCEEEE--E-CCEETTEECCE
T ss_pred cCCCccCceECCCCC-----EEEEEeccccCCCCCCEEE--------------EEeCCCCcEEEE--E-ecccCCCCCCC
Confidence 344678999999997 7777 66788888 666554432111 0 00112355679
Q ss_pred EEEEEccC-CCEEEEEcCCceEEEEeccCccccccceec-cc-cc-ccCCCeEEEEECCCCCEEEEEeCC----------
Q psy15549 85 NVVRFSPN-GELLASGDDVGKEIWYLTERESGIANVEFA-SD-LS-RHQKAVNVVRFSPNGELLASGDDE---------- 150 (621)
Q Consensus 85 ~~l~~spd-g~~las~~d~~v~iw~~~~~~~~~~~~~~~-~~-~~-~h~~~V~~i~~sp~g~~l~s~s~d---------- 150 (621)
.+++++++ |+++++...+++.+|+.. +.. ... .. .. .....+.+++++++|+++++...+
T Consensus 74 ~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~-----~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~ 147 (314)
T 1pjx_A 74 AGCQCDRDANQLFVADMRLGLLVVQTD-GTF-----EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEETT-SCE-----EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred ceEEEecCCCcEEEEECCCCEEEEeCC-CCE-----EEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence 99999999 877777666688889877 421 111 11 11 122458899999999888776654
Q ss_pred -----CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEEC----CCCCEEEEE-eCCCeEEEEE
Q psy15549 151 -----STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWS----PTSTHLISG-SVDNTAIMWD 220 (621)
Q Consensus 151 -----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s----pd~~~l~s~-~~dg~i~vwd 220 (621)
+.|..|+.. ++. ..+..+......++|+ |+++.|+.+ ..++.|.+||
T Consensus 148 ~~~~~~~l~~~~~~-g~~----------------------~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~ 204 (314)
T 1pjx_A 148 MQEKFGSIYCFTTD-GQM----------------------IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYD 204 (314)
T ss_dssp TSSSCEEEEEECTT-SCE----------------------EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEE
T ss_pred ccCCCCeEEEECCC-CCE----------------------EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEE
Confidence 456666644 221 1122233456889999 999766555 4678999999
Q ss_pred CC-CCc-----EEEEeccCC-cceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCcccccccccccc
Q psy15549 221 VH-KGK-----NLGILTEHK-KFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLF 293 (621)
Q Consensus 221 ~~-~~~-----~~~~~~~~~-~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (621)
+. +++ ....+..+. ..+..++++++|+++++...++.|.+||..+++.+..+..+
T Consensus 205 ~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~------------------ 266 (314)
T 1pjx_A 205 IKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP------------------ 266 (314)
T ss_dssp EEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS------------------
T ss_pred CCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC------------------
Confidence 86 443 223333343 56789999999998887778899999998866654443211
Q ss_pred ccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceee
Q psy15549 294 HDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISV 333 (621)
Q Consensus 294 ~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~ 333 (621)
...+.+++|+++|++|++++. .++.+..++.
T Consensus 267 -----~~~~~~i~~~~dg~~l~v~~~----~~~~l~~~~~ 297 (314)
T 1pjx_A 267 -----FEKPSNLHFKPQTKTIFVTEH----ENNAVWKFEW 297 (314)
T ss_dssp -----SSCEEEEEECTTSSEEEEEET----TTTEEEEEEC
T ss_pred -----CCCceeEEECCCCCEEEEEeC----CCCeEEEEeC
Confidence 134688999999996665542 3445555443
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.45 E-value=5.6e-11 Score=115.46 Aligned_cols=247 Identities=12% Similarity=0.139 Sum_probs=154.7
Q ss_pred cCcEEEEEEccCCCEEEE-------E-cCCceEEEEeccCccccccceecc--cccccCCCeEEEEECCC-CCEEEEEeC
Q psy15549 81 QKAVNVVRFSPNGELLAS-------G-DDVGKEIWYLTERESGIANVEFAS--DLSRHQKAVNVVRFSPN-GELLASGDD 149 (621)
Q Consensus 81 ~~~V~~l~~spdg~~las-------~-~d~~v~iw~~~~~~~~~~~~~~~~--~~~~h~~~V~~i~~sp~-g~~l~s~s~ 149 (621)
-....+++|+++|+++++ + .++.|.+|+...+.. .... ...++...+.+++++++ |+++++..
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-----~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~- 90 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-----TVICKPEVNGYGGIPAGCQCDRDANQLFVADM- 90 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-----EEEECCEETTEECCEEEEEECSSSSEEEEEET-
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-----EEEEecccCCCCCCCceEEEecCCCcEEEEEC-
Confidence 345789999999998888 3 377899998765521 1111 01124567899999999 76555544
Q ss_pred CCcEEEEEccCCCCCCC-CCCCCcccccccccceeeeeeec-CCCCCeEEEEECCCCCEEEEEeCC--------------
Q psy15549 150 ESTIIVWKQKTDQDLPE-FPSSNLDEENVNKEHWIVTKILR-GHLEDVYDISWSPTSTHLISGSVD-------------- 213 (621)
Q Consensus 150 dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~spd~~~l~s~~~d-------------- 213 (621)
.+.|.+||.. ++.... . .... .....+.+++++++|+++++...+
T Consensus 91 ~~~l~~~d~~-g~~~~~~~------------------~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~ 151 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAK------------------KDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp TTEEEEEETT-SCEEECCS------------------BCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred CCCEEEEeCC-CCEEEEEe------------------ccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCC
Confidence 4478999987 542110 0 0000 122457899999999888776654
Q ss_pred -CeEEEEECCCCcEEEEeccCCcceEEEEEc----CCCCEEEEE-eCCCcEEEEEcc-CceeeeecccCCCCCCCccccc
Q psy15549 214 -NTAIMWDVHKGKNLGILTEHKKFVQGVAWD----PKNQYVATL-SSDRSLRTYSIQ-SKKVISRACRSKLPVDSSHELF 286 (621)
Q Consensus 214 -g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s----p~~~~l~s~-~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 286 (621)
+.|..|+.. ++..... .+......++|+ |+++.|+.+ ..++.|.+||+. +++.......
T Consensus 152 ~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~------------ 217 (314)
T 1pjx_A 152 FGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVW------------ 217 (314)
T ss_dssp CEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEE------------
T ss_pred CCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEE------------
Confidence 567777765 5543322 333456789999 999766655 457899999986 3432110000
Q ss_pred cccccccccCCcc-cceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeecccee
Q psy15549 287 DKVVPLFHDDTMK-SFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVL 365 (621)
Q Consensus 287 ~~~~~~~~~~~~~-~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (621)
....... .....++++++|+++++
T Consensus 218 ------~~~~~~~~~~p~~i~~d~~G~l~v~------------------------------------------------- 242 (314)
T 1pjx_A 218 ------GHIPGTHEGGADGMDFDEDNNLLVA------------------------------------------------- 242 (314)
T ss_dssp ------EECCCCSSCEEEEEEEBTTCCEEEE-------------------------------------------------
T ss_pred ------EECCCCCCCCCCceEECCCCCEEEE-------------------------------------------------
Confidence 0000000 22345666666654443
Q ss_pred eecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEE-EEeCCCcEEEEEecC
Q psy15549 366 FELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLI-ASSTDGYCSIISFGD 443 (621)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~-s~s~dg~i~iw~~~~ 443 (621)
...++.|.+||..+++.+..+. .+...+.+++|+|+|+.|. +...++.|..|++..
T Consensus 243 ---------------------~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 243 ---------------------NWGSSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ---------------------EETTTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ---------------------EcCCCEEEEEcCCCCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 2346788899988777666653 3557899999999999555 445668899999874
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.43 E-value=7.4e-11 Score=113.56 Aligned_cols=232 Identities=11% Similarity=0.078 Sum_probs=154.5
Q ss_pred ecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEE
Q psy15549 10 WHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRF 89 (621)
Q Consensus 10 ~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 89 (621)
..+..--.+..|+|++. .++++...++.|. .|+..++... .......+.++++
T Consensus 9 ~~~~~~~Egp~w~~~~~----~l~~~d~~~~~i~--------------~~d~~~~~~~---------~~~~~~~~~~i~~ 61 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSN----SLLFVDIPAKKVC--------------RWDSFTKQVQ---------RVTMDAPVSSVAL 61 (297)
T ss_dssp CCCCSBEEEEEEETTTT----EEEEEETTTTEEE--------------EEETTTCCEE---------EEECSSCEEEEEE
T ss_pred ccCCccccCCeEECCCC----EEEEEECCCCEEE--------------EEECCCCcEE---------EEeCCCceEEEEE
Confidence 33444667899999654 3777777888998 7777655321 1123467999999
Q ss_pred ccCCCEEEEEcCCceEEEEeccCccccccceeccccc--ccCCCeEEEEECCCCCEEEEEeCC---------CcEEEEEc
Q psy15549 90 SPNGELLASGDDVGKEIWYLTERESGIANVEFASDLS--RHQKAVNVVRFSPNGELLASGDDE---------STIIVWKQ 158 (621)
Q Consensus 90 spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~--~h~~~V~~i~~sp~g~~l~s~s~d---------g~i~vwd~ 158 (621)
+++|+++++ .+++|.+|+...+.. ..+.... .....++.++++|+|+++++.... ..-.||.+
T Consensus 62 ~~dG~l~v~-~~~~l~~~d~~~g~~-----~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~ 135 (297)
T 3g4e_A 62 RQSGGYVAT-IGTKFCALNWKEQSA-----VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSL 135 (297)
T ss_dssp BTTSSEEEE-ETTEEEEEETTTTEE-----EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEE
T ss_pred CCCCCEEEE-ECCeEEEEECCCCcE-----EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEE
Confidence 999996555 477899998876521 2121111 122457899999999977654321 33456665
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEE-EeCCCeEEEEEC--CCCcE-----EEEe
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLIS-GSVDNTAIMWDV--HKGKN-----LGIL 230 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s-~~~dg~i~vwd~--~~~~~-----~~~~ 230 (621)
...... ..+..+......++|+||++.|+. .+.++.|.+|++ .++.. ...+
T Consensus 136 d~~g~~---------------------~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~ 194 (297)
T 3g4e_A 136 FPDHHV---------------------KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL 194 (297)
T ss_dssp CTTSCE---------------------EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC
T ss_pred ECCCCE---------------------EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC
Confidence 533221 112223345688999999987654 455789999997 45543 2223
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeec-C
Q psy15549 231 TEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS-P 309 (621)
Q Consensus 231 ~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-p 309 (621)
..+...+..++++++|++.++....+.|.+||..+++.+..+..+ ...+++++|. |
T Consensus 195 ~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p-----------------------~~~~t~~~f~g~ 251 (297)
T 3g4e_A 195 EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP-----------------------VDKTTSCCFGGK 251 (297)
T ss_dssp CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS-----------------------SSBEEEEEEESG
T ss_pred CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC-----------------------CCCceEEEEeCC
Confidence 334456789999999988877777888999999888877766422 1246899998 8
Q ss_pred CCCeEEecc
Q psy15549 310 DGQLLIAPS 318 (621)
Q Consensus 310 dg~~l~~~s 318 (621)
+++.|++++
T Consensus 252 d~~~L~vt~ 260 (297)
T 3g4e_A 252 NYSEMYVTC 260 (297)
T ss_dssp GGCEEEEEE
T ss_pred CCCEEEEEc
Confidence 988887766
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.37 E-value=1.6e-10 Score=114.55 Aligned_cols=275 Identities=8% Similarity=-0.062 Sum_probs=166.6
Q ss_pred EECCCCCEEEEEeC--CC---cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q psy15549 136 RFSPNGELLASGDD--ES---TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISG 210 (621)
Q Consensus 136 ~~sp~g~~l~s~s~--dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~ 210 (621)
...|++++++++.. .. .|.+||..+++.+ ..+.....+ .++++|||++|+++
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~---------------------~~i~~g~~p--~i~~spDg~~lyv~ 83 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL---------------------GHVNGGFLP--NPVAAHSGSEFALA 83 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEE---------------------EEecCCCCC--CeEECCCCCEEEEE
Confidence 34467777777653 22 7899999888753 222322233 89999999999988
Q ss_pred e----------CCCeEEEEECCCCcEEEEeccC-------CcceEEEEEcCCCCEEEEEeC--CCcEEEEEccCceeeee
Q psy15549 211 S----------VDNTAIMWDVHKGKNLGILTEH-------KKFVQGVAWDPKNQYVATLSS--DRSLRTYSIQSKKVISR 271 (621)
Q Consensus 211 ~----------~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~l~~sp~~~~l~s~~~--dg~i~iwd~~~~~~~~~ 271 (621)
. .++.|.+||..+.+.+..+... ......++|+|||++|+++.. ++.|.++| .+++.+..
T Consensus 84 n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 84 STSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred eccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 6 3678999999998887766432 123458899999999998874 47899999 99888766
Q ss_pred -cccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeE-EeccccccCCCCCCcceeeeeeeeecccCCCceec
Q psy15549 272 -ACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLL-IAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349 (621)
Q Consensus 272 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l-~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 349 (621)
+... .++.+.|++... ++.+ .|+.+..++. ........... ...
T Consensus 163 ~i~~~---------------------------~~~~~~~~~~~~~~~~~-----~dg~~~~vd~-~g~~~~~~~~~-~~~ 208 (373)
T 2mad_H 163 LLSSP---------------------------TCYHIHPGAPSTFYLLC-----AQGGLAKTDH-AGGAAGAGLVG-AML 208 (373)
T ss_pred EcCCC---------------------------ceEEEEeCCCceEEEEc-----CCCCEEEEEC-CCcEEEEEecc-ccc
Confidence 5311 123344444322 2222 3444444443 11100000000 000
Q ss_pred CCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCce--eEEEec---------ccccceEEE
Q psy15549 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASP--FAFIAN---------IHYTKLTDI 418 (621)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~---------~h~~~v~~~ 418 (621)
........ .+.+..+++.++..+..+.+.+.|+..... +..+.. ........+
T Consensus 209 ~~~~p~~~----------------~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~ 272 (373)
T 2mad_H 209 TAAQNLLT----------------QPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV 272 (373)
T ss_pred cCCcceee----------------cceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence 00000000 011122334444445778999999876532 222110 011224457
Q ss_pred EEcCCCCeEEEEeC----------CCcEEEEEecCCcCCcccCCCCCcccccCCCCCCC-CcccCC-CcccHHHhcccC
Q psy15549 419 TWSSDGKVLIASST----------DGYCSIISFGDNEIGIPYVPPSGEESKENDPTKGE-PVRSED-KPRSAEQAKGEG 485 (621)
Q Consensus 419 ~~spdg~~l~s~s~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~-~~~~~~~w~~~~ 485 (621)
+++||++.|.++.. ++.|.++|+.+++....+.... ....+.+++||+ .+.... .++.+.+++...
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 89999998877653 3579999999999888875433 567789999999 666665 578888888654
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.36 E-value=5.3e-10 Score=112.38 Aligned_cols=158 Identities=11% Similarity=-0.003 Sum_probs=104.2
Q ss_pred CcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCC--cEEEEEc
Q psy15549 82 KAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDES--TIIVWKQ 158 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg--~i~vwd~ 158 (621)
.....|+|+++|+++++.. ++.|++|+...+ ........ ..... ++|+++++.|+++..++ .|.+|+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g-------~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~ 201 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN-------KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMK 201 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT-------EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC-------EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEc
Confidence 4678999999999777766 677999998765 22222222 22233 89999999998888766 7888887
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeee-cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE----eccC
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKIL-RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGI----LTEH 233 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~ 233 (621)
........ ...+ ......+.+++++|++..|+++..++.|+.||..++..... ..++
T Consensus 202 ~~~~~~~~------------------~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~ 263 (409)
T 3hrp_A 202 ASGWAPTR------------------IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS 263 (409)
T ss_dssp GGTTCEEE------------------EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC
T ss_pred CCCceeEE------------------eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC
Confidence 66543110 0111 22456678899999555666677789999999987764332 2222
Q ss_pred Ccce-E-EEEEcCC-CCEEEEEeCCCcEEEEEccCc
Q psy15549 234 KKFV-Q-GVAWDPK-NQYVATLSSDRSLRTYSIQSK 266 (621)
Q Consensus 234 ~~~v-~-~l~~sp~-~~~l~s~~~dg~i~iwd~~~~ 266 (621)
...- . .++|+|+ +.++++-..++.|+.|+....
T Consensus 264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~ 299 (409)
T 3hrp_A 264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE 299 (409)
T ss_dssp CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC
Confidence 2222 3 8999996 444555556788999987543
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.35 E-value=3.7e-11 Score=118.28 Aligned_cols=284 Identities=12% Similarity=0.052 Sum_probs=165.0
Q ss_pred CcEEEEEEccCCCEEEEEc---CCceEEEEeccCcccccccee-cccccccCCCeEEEEECCCCCEEEEEeC-----CCc
Q psy15549 82 KAVNVVRFSPNGELLASGD---DVGKEIWYLTERESGIANVEF-ASDLSRHQKAVNVVRFSPNGELLASGDD-----EST 152 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~---d~~v~iw~~~~~~~~~~~~~~-~~~~~~h~~~V~~i~~sp~g~~l~s~s~-----dg~ 152 (621)
..+..++++++|+++++.. ++.+.||.+..+. ...+.. ......|...+..++++++++++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 6789999999999998864 2336777776321 110000 0122345678999999999876665433 578
Q ss_pred EEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEE-EEEe---CCCeEEEEECCCCcEEE
Q psy15549 153 IIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHL-ISGS---VDNTAIMWDVHKGKNLG 228 (621)
Q Consensus 153 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l-~s~~---~dg~i~vwd~~~~~~~~ 228 (621)
|.+||+.+++.+..+... .....+...+..+++++++..+ ++-. .++.|.+||+.+++...
T Consensus 95 i~~~d~~tg~~~~~~~~~---------------~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r 159 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLP---------------PPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR 159 (343)
T ss_dssp EEEEETTTTEEEEEEECC---------------TTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred EEEEECCCCeEEEEEECC---------------hhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence 999999887643221000 0001233456889999865454 4444 57899999999888777
Q ss_pred EeccCCcceE-EEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeee
Q psy15549 229 ILTEHKKFVQ-GVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTF 307 (621)
Q Consensus 229 ~~~~~~~~v~-~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 307 (621)
.+..|..... ...+.++|..+.+.+.++.++.|.. .+..++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~-------------------------------------~~~gia~ 202 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL-------------------------------------GVNGIVL 202 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC-------------------------------------CEEEEEE
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceeceec-------------------------------------ccceeEe
Confidence 6655422110 1345556777777778887765532 1267999
Q ss_pred cCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEE
Q psy15549 308 SPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAV 387 (621)
Q Consensus 308 spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (621)
+|||+.|+++. ..+. ++|.+................. .+.... ........++..++..+++.
T Consensus 203 s~dg~~ly~~~-----~~~~-~l~~~~~~~~~~~~~~~~~~~~----~~~~~g-------~~g~pdgia~d~~G~l~va~ 265 (343)
T 2qe8_A 203 DAENEWLYLSP-----MHST-SMYRIKSADLSNLQLTDAELGS----KIERYS-------EKPICDGISIDKDHNIYVGD 265 (343)
T ss_dssp CTTSCEEEEEE-----SSCS-EEEEEEHHHHTCTTCCHHHHHT----TCEEEE-------ECCSCSCEEECTTCCEEEEE
T ss_pred ccCCCEEEEEe-----CCCC-eEEEEEHHHhcCCCCChhhhhc----ceEecc-------cCCCCceEEECCCCCEEEEc
Confidence 99999888876 3332 4444431100000000000000 000000 00001112334466777777
Q ss_pred EcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcE
Q psy15549 388 ATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYC 436 (621)
Q Consensus 388 ~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i 436 (621)
..++.|.+||..+++........+...+++++|.++|+++++.+..+.+
T Consensus 266 ~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 266 LAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp GGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred cCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 7789999999866654333322234568999999999888877654443
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.34 E-value=3.6e-10 Score=108.69 Aligned_cols=230 Identities=10% Similarity=0.042 Sum_probs=139.2
Q ss_pred CCeEEEEECCCC-CEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q psy15549 130 KAVNVVRFSPNG-ELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLI 208 (621)
Q Consensus 130 ~~V~~i~~sp~g-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~ 208 (621)
.-.-+..|++++ .++++...++.|..||..++.. .. ......+.+++++++|++++
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------~~-~~~~~~~~~i~~~~dG~l~v 69 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----------------------QR-VTMDAPVSSVALRQSGGYVA 69 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----------------------EE-EECSSCEEEEEEBTTSSEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----------------------EE-EeCCCceEEEEECCCCCEEE
Confidence 345678999954 4566666788999999887652 11 12346789999999999555
Q ss_pred EEeCCCeEEEEECCCCcEEEEecc----CCcceEEEEEcCCCCEEEEEeCC---------CcEEEEEccC-ceeeeeccc
Q psy15549 209 SGSVDNTAIMWDVHKGKNLGILTE----HKKFVQGVAWDPKNQYVATLSSD---------RSLRTYSIQS-KKVISRACR 274 (621)
Q Consensus 209 s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~l~~sp~~~~l~s~~~d---------g~i~iwd~~~-~~~~~~~~~ 274 (621)
+ . ++.|.+||..+++....... ....+..++++|+|+++++.... ..-.+|.+.. ++......
T Consensus 70 ~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~- 146 (297)
T 3g4e_A 70 T-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD- 146 (297)
T ss_dssp E-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-
T ss_pred E-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee-
Confidence 4 4 56899999988765433221 12457889999999976654322 2335555443 22211110
Q ss_pred CCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeee--eeeeecccCCCceecCCc
Q psy15549 275 SKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVT--HVFTRACLNKPAVCLPSL 352 (621)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~--~~~~~~~~~~~~~~~~~~ 352 (621)
.......++|+||++.|+++.. ..+.+..|++. ...... ......+...
T Consensus 147 -----------------------~~~~pngi~~spdg~~lyv~~~----~~~~i~~~~~d~~~G~~~~--~~~~~~~~~~ 197 (297)
T 3g4e_A 147 -----------------------QVDISNGLDWSLDHKIFYYIDS----LSYSVDAFDYDLQTGQISN--RRSVYKLEKE 197 (297)
T ss_dssp -----------------------EESBEEEEEECTTSCEEEEEEG----GGTEEEEEEECTTTCCEEE--EEEEEECCGG
T ss_pred -----------------------ccccccceEEcCCCCEEEEecC----CCCcEEEEeccCCCCcccC--cEEEEECCCC
Confidence 0112368999999998766542 34556666542 000000 0000001111
Q ss_pred ccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEc-CCCCeEEEEe
Q psy15549 353 QYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWS-SDGKVLIASS 431 (621)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~l~s~s 431 (621)
......+.+ ..++...++....+.|..||..+++.+..+.. +...+++++|. ||++.|..++
T Consensus 198 ~~~p~g~~~----------------d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~-p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 198 EQIPDGMCI----------------DAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL-PVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp GCEEEEEEE----------------BTTSCEEEEEETTTEEEEECTTTCCEEEEEEC-SSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCCCeeEE----------------CCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC-CCCCceEEEEeCCCCCEEEEEc
Confidence 111222222 23566666666778899999999998888753 55689999998 8988766554
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.34 E-value=2.9e-10 Score=109.87 Aligned_cols=161 Identities=11% Similarity=0.036 Sum_probs=107.5
Q ss_pred cccccCcEEEEEEccCCCEE-EEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEE
Q psy15549 77 LSRHQKAVNVVRFSPNGELL-ASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTII 154 (621)
Q Consensus 77 ~~~h~~~V~~l~~spdg~~l-as~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~ 154 (621)
+..+........|+|+|+.| +++. ++.|..|+.. +. ...+..+...+..++++++|+++++...++.|.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--------EEEEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 33445567889999999954 4444 6778888763 21 223334566789999999999777666667899
Q ss_pred EEEccCCCCCCCCCCCCcccccccccceeeeeeecC-CCCCeEEEEECCCCCEEEE----EeC-------------CCeE
Q psy15549 155 VWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRG-HLEDVYDISWSPTSTHLIS----GSV-------------DNTA 216 (621)
Q Consensus 155 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~spd~~~l~s----~~~-------------dg~i 216 (621)
+|+.. ++.. .+ .....+ ....+..+++.|+|+++++ |.. .+.|
T Consensus 111 ~~~~~-g~~~-~~-----------------~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v 171 (305)
T 3dr2_A 111 RSDAD-GQAH-LL-----------------VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSV 171 (305)
T ss_dssp EECTT-SCEE-EE-----------------ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred EECCC-CCEE-EE-----------------EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeE
Confidence 99875 3311 00 001111 1234678999999998886 332 2567
Q ss_pred EEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCC------CcEEEEEccCce
Q psy15549 217 IMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSD------RSLRTYSIQSKK 267 (621)
Q Consensus 217 ~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~d------g~i~iwd~~~~~ 267 (621)
..||..+++..... .......++|+|+++.|+.+... +.|.+|++..+.
T Consensus 172 ~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 172 YRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp EEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred EEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 88887666654333 33456789999999988877665 689999987654
No 214
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.34 E-value=6.6e-11 Score=115.46 Aligned_cols=278 Identities=11% Similarity=0.049 Sum_probs=171.4
Q ss_pred CeEEEeccccccCCcceEEEEecC-----CceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEE
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGA-----DSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRF 89 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~-----dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 89 (621)
........|++. .+++... ++.|. +.|..+.+... ++.....+ . +++
T Consensus 34 ~~~~~~~~pd~~-----~vyV~~~~~~~~~~~V~--------------ViD~~t~~v~~-------~I~vG~~P-~-va~ 85 (386)
T 3sjl_D 34 PRILEAPAPDAR-----RVYVNDPAHFAAVTQQF--------------VIDGEAGRVIG-------MIDGGFLP-N-PVV 85 (386)
T ss_dssp CCBCCCCCCCTT-----EEEEEECGGGCSSEEEE--------------EEETTTTEEEE-------EEEECSSC-E-EEE
T ss_pred cceeeccCCCCC-----EEEEEcCcccCCCCEEE--------------EEECCCCeEEE-------EEECCCCC-c-EEE
Confidence 344566789997 6666544 67888 66655544322 23322333 3 999
Q ss_pred ccCCCEEEEEc-----------CCceEEEEeccCccccccceeccccccc-------CCCeEEEEECCCCCEEEEEeC--
Q psy15549 90 SPNGELLASGD-----------DVGKEIWYLTERESGIANVEFASDLSRH-------QKAVNVVRFSPNGELLASGDD-- 149 (621)
Q Consensus 90 spdg~~las~~-----------d~~v~iw~~~~~~~~~~~~~~~~~~~~h-------~~~V~~i~~sp~g~~l~s~s~-- 149 (621)
+|||++|+++. ++.|.+||..+. +....+.-. ......++|+|||++|+++..
T Consensus 86 spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~-------~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~ 158 (386)
T 3sjl_D 86 ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL-------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP 158 (386)
T ss_dssp CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred CCCCCEEEEEcccccccccCCCCCEEEEEECCCC-------eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC
Confidence 99999887664 456999998876 333333211 123557899999999888764
Q ss_pred CCcEEEEEccCCCCCCCCCCCCccc-cccc---------ccceeee---------e----eecCCCCCeE-EEEEC-CCC
Q psy15549 150 ESTIIVWKQKTDQDLPEFPSSNLDE-ENVN---------KEHWIVT---------K----ILRGHLEDVY-DISWS-PTS 204 (621)
Q Consensus 150 dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~---------~----~~~~~~~~v~-~i~~s-pd~ 204 (621)
++.|.++|+.+++.+..++...... .... ...+... . .+......+. ...|. ++|
T Consensus 159 ~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 159 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred CCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 6899999999998776664322100 0000 0000000 0 0000011111 13443 566
Q ss_pred CEEEEEeCCCeEEEEECCCCcE--EEEec--------c--CCcceEEEEEcCCCCEEEEEeC----------CCcEEEEE
Q psy15549 205 THLISGSVDNTAIMWDVHKGKN--LGILT--------E--HKKFVQGVAWDPKNQYVATLSS----------DRSLRTYS 262 (621)
Q Consensus 205 ~~l~s~~~dg~i~vwd~~~~~~--~~~~~--------~--~~~~v~~l~~sp~~~~l~s~~~----------dg~i~iwd 262 (621)
++++ .+.+|.|++.|+.+... +..+. . .......++++++++.++.... .+.|.++|
T Consensus 239 ~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD 317 (386)
T 3sjl_D 239 RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 317 (386)
T ss_dssp EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence 5444 56689999999976542 22221 0 1123445788999999887653 24799999
Q ss_pred ccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCC-eEEeccccccCCCCCCcceeeeeeeeecc
Q psy15549 263 IQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQ-LLIAPSGCLENSDSTRKPISVTHVFTRAC 341 (621)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~-~l~~~s~~~~~~d~~i~~~~~~~~~~~~~ 341 (621)
+.+++.+..+.. ...+.++++++|++ +|+++.
T Consensus 318 ~~t~kv~~~i~v------------------------g~~~~~lavs~D~~~~ly~tn----------------------- 350 (386)
T 3sjl_D 318 AKTGERLAKFEM------------------------GHEIDSINVSQDEKPLLYALS----------------------- 350 (386)
T ss_dssp TTTCCEEEEEEE------------------------EEEECEEEECSSSSCEEEEEE-----------------------
T ss_pred CCCCeEEEEEEC------------------------CCCcceEEECCCCCeEEEEEc-----------------------
Confidence 999999888742 22457899999997 555533
Q ss_pred cCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEc
Q psy15549 342 LNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWS 421 (621)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~s 421 (621)
..++.|.++|..+++.+..+.. ...-+.|.++
T Consensus 351 ----------------------------------------------~~~~~VsViD~~t~k~~~~i~~--~~~p~~l~~s 382 (386)
T 3sjl_D 351 ----------------------------------------------TGDKTLYIHDAESGEELRSVNQ--LGHGPQVITT 382 (386)
T ss_dssp ----------------------------------------------TTTTEEEEEETTTCCEEEEECC--CCSSCCEEEE
T ss_pred ----------------------------------------------CCCCeEEEEECCCCcEEEEecC--CCCCceeEEC
Confidence 1468899999999999998854 2345566777
Q ss_pred CC
Q psy15549 422 SD 423 (621)
Q Consensus 422 pd 423 (621)
+|
T Consensus 383 ~d 384 (386)
T 3sjl_D 383 AD 384 (386)
T ss_dssp CC
T ss_pred Cc
Confidence 66
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.34 E-value=6.1e-10 Score=108.63 Aligned_cols=225 Identities=13% Similarity=0.032 Sum_probs=145.0
Q ss_pred CeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCC
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 94 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 94 (621)
...+.+|+|++. .++++...++.|. .|+..++.... + .....+.+++|+++|+
T Consensus 50 ~~egp~~~~~~~----~l~~~d~~~~~i~--------------~~d~~~~~~~~--------~-~~~~~v~~i~~~~dg~ 102 (326)
T 2ghs_A 50 LGEGPTFDPASG----TAWWFNILERELH--------------ELHLASGRKTV--------H-ALPFMGSALAKISDSK 102 (326)
T ss_dssp BEEEEEEETTTT----EEEEEEGGGTEEE--------------EEETTTTEEEE--------E-ECSSCEEEEEEEETTE
T ss_pred CCcCCeEeCCCC----EEEEEECCCCEEE--------------EEECCCCcEEE--------E-ECCCcceEEEEeCCCe
Confidence 457889999754 3677777788888 77766543211 1 1235799999999999
Q ss_pred EEEEEcCCceEEEEeccCccccccceeccccc--ccCCCeEEEEECCCCCEEEEEeCC----CcEEEEEccCCCCCCCCC
Q psy15549 95 LLASGDDVGKEIWYLTERESGIANVEFASDLS--RHQKAVNVVRFSPNGELLASGDDE----STIIVWKQKTDQDLPEFP 168 (621)
Q Consensus 95 ~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~--~h~~~V~~i~~sp~g~~l~s~s~d----g~i~vwd~~~~~~~~~~~ 168 (621)
++++. .+++.+|+...+.. ..+.... .....+..++++|+|+++++...+ +...||.+.+++.
T Consensus 103 l~v~~-~~gl~~~d~~~g~~-----~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~----- 171 (326)
T 2ghs_A 103 QLIAS-DDGLFLRDTATGVL-----TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV----- 171 (326)
T ss_dssp EEEEE-TTEEEEEETTTCCE-----EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE-----
T ss_pred EEEEE-CCCEEEEECCCCcE-----EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcE-----
Confidence 88765 55688888765521 1111111 112468899999999977655421 2344444443221
Q ss_pred CCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECC--CC-c-----EEEEeccCCcceEE
Q psy15549 169 SSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISG-SVDNTAIMWDVH--KG-K-----NLGILTEHKKFVQG 239 (621)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~-~~dg~i~vwd~~--~~-~-----~~~~~~~~~~~v~~ 239 (621)
..+..+......++|+||++.|+.+ +.++.|.+|++. ++ . ....+......+..
T Consensus 172 -----------------~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~g 234 (326)
T 2ghs_A 172 -----------------TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG 234 (326)
T ss_dssp -----------------EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred -----------------EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCe
Confidence 1122233456789999999877655 456899999986 55 3 22233334456788
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeec-CCCCeEEecc
Q psy15549 240 VAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS-PDGQLLIAPS 318 (621)
Q Consensus 240 l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-pdg~~l~~~s 318 (621)
++++++|+++++...++.|.+||. +++.+..+... ...+.+++|+ ++++.|++++
T Consensus 235 i~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~-----------------------~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 235 SVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP-----------------------GKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS-----------------------CSBEEEEEEESTTSCEEEEEE
T ss_pred eEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC-----------------------CCCcEEEEEecCCCCEEEEEe
Confidence 999999987776666788999998 56555544211 1246899998 8988776655
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.33 E-value=9.5e-11 Score=126.85 Aligned_cols=245 Identities=12% Similarity=0.047 Sum_probs=154.2
Q ss_pred cccCcEEEEEEccCCCEEEEEc------CCceEEEEeccCccccccceecc-cccccCCCeEEEEECCCCCEEEEEeCCC
Q psy15549 79 RHQKAVNVVRFSPNGELLASGD------DVGKEIWYLTERESGIANVEFAS-DLSRHQKAVNVVRFSPNGELLASGDDES 151 (621)
Q Consensus 79 ~h~~~V~~l~~spdg~~las~~------d~~v~iw~~~~~~~~~~~~~~~~-~~~~h~~~V~~i~~sp~g~~l~s~s~dg 151 (621)
+|...+..++|||||++||.+. ...|++||+.++. .+. .+.. .....++|+ ||+.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-------~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~ 195 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-------PLETPLKD--VKFSGISWL-GNEGFFYSSYDK 195 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-------EEEEEEEE--EESCCCEEE-TTTEEEEEESSC
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC-------CCccccCC--ceeccEEEe-CCCEEEEEEecC
Confidence 4566789999999999999653 1347899998763 111 1111 113567899 999999888774
Q ss_pred -------------cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecC-CCCCeEEEEECCCCCEEEEEeC----C
Q psy15549 152 -------------TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRG-HLEDVYDISWSPTSTHLISGSV----D 213 (621)
Q Consensus 152 -------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~spd~~~l~s~~~----d 213 (621)
.|++|++.+...... .+..... |...+..+.|+|||++|+.... .
T Consensus 196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~-----------------~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 196 PDGSELSARTDQHKVYFHRLGTAQEDDR-----------------LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSG 258 (693)
T ss_dssp CC-------CCCCEEEEEETTSCGGGCE-----------------EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSC
T ss_pred cccccccccCCCcEEEEEECCCCcccce-----------------EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCC
Confidence 399999877643110 0111223 4456788999999998865443 3
Q ss_pred CeEEEEECCCCc-EEEEeccCCcceEEEEEcCCCCEEEEEeC-C---CcEEEEEccCcee--eeecccCCCCCCCccccc
Q psy15549 214 NTAIMWDVHKGK-NLGILTEHKKFVQGVAWDPKNQYVATLSS-D---RSLRTYSIQSKKV--ISRACRSKLPVDSSHELF 286 (621)
Q Consensus 214 g~i~vwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~~~-d---g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~ 286 (621)
..|+++|+.++. ....+..+....... |+++|..|+..+. + +.|..+|+.++.. ...+..+
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~----------- 326 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE----------- 326 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC-----------
T ss_pred cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC-----------
Confidence 589999998763 345555565555554 6677776665544 2 5688888876542 1111100
Q ss_pred cccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceee
Q psy15549 287 DKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLF 366 (621)
Q Consensus 287 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (621)
...+. .|++++++|+...
T Consensus 327 ------------~~~~~--~~s~~g~~lv~~~------------------------------------------------ 344 (693)
T 3iuj_A 327 ------------RQQVL--TVHSGSGYLFAEY------------------------------------------------ 344 (693)
T ss_dssp ------------CSSCE--EEEEETTEEEEEE------------------------------------------------
T ss_pred ------------CCCEE--EEEEECCEEEEEE------------------------------------------------
Confidence 01111 6666666665543
Q ss_pred ecCCCCCCCCccCCCcEEEEEEcCC--cEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCC----CcEEEEE
Q psy15549 367 ELKPSDDKPLFKLPYRIVIAVATEN--NILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTD----GYCSIIS 440 (621)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~d----g~i~iw~ 440 (621)
..++ .|++||+..+ ....+...+...+..+.++++++.|+....+ +.|+.||
T Consensus 345 ---------------------~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 345 ---------------------MVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp ---------------------EETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred ---------------------EECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 1233 6788888744 3344433344567888889998877765444 7899999
Q ss_pred ecCCcC
Q psy15549 441 FGDNEI 446 (621)
Q Consensus 441 ~~~~~~ 446 (621)
+.+++.
T Consensus 403 ~~~g~~ 408 (693)
T 3iuj_A 403 PKSGAI 408 (693)
T ss_dssp TTTCCE
T ss_pred CCCCeE
Confidence 887753
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.31 E-value=2.4e-10 Score=123.77 Aligned_cols=202 Identities=7% Similarity=0.033 Sum_probs=129.2
Q ss_pred CCCCeEEEeccccccCCcceEEEEe-----cCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 12 NRDPVLSVDIQLKQEKDNCYRIVTG-----GADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 12 h~~~v~~l~~spd~~~~~~~~l~tg-----~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
|...+..++|||||+ +||.+ +....|+ +||+.+++.... .+.+ .....
T Consensus 127 ~~~~l~~~~~SpDg~-----~lAy~~~~~G~~~~~i~--------------v~dl~tg~~~~~------~~~~--~k~~~ 179 (693)
T 3iuj_A 127 GTTALDQLSFSRDGR-----ILAYSLSLAGSDWREIH--------------LMDVESKQPLET------PLKD--VKFSG 179 (693)
T ss_dssp SCCEEEEEEECTTSS-----EEEEEEECSSCCEEEEE--------------EEETTTCSEEEE------EEEE--EESCC
T ss_pred CcEEEEEEEECCCCC-----EEEEEEecCCCceEEEE--------------EEECCCCCCCcc------ccCC--ceecc
Confidence 445788999999998 88843 3335666 888887753211 1111 11356
Q ss_pred EEEccCCCEEEEEc-CC-------------ceEEEEeccCccccccceecccccc-cCCCeEEEEECCCCCEEEEEeC--
Q psy15549 87 VRFSPNGELLASGD-DV-------------GKEIWYLTERESGIANVEFASDLSR-HQKAVNVVRFSPNGELLASGDD-- 149 (621)
Q Consensus 87 l~~spdg~~las~~-d~-------------~v~iw~~~~~~~~~~~~~~~~~~~~-h~~~V~~i~~sp~g~~l~s~s~-- 149 (621)
++|+ ||+.|+.++ +. .|.+|++.+.... -..+..... |...+..+.|+|||++|+....
T Consensus 180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~---~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 255 (693)
T 3iuj_A 180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED---DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS 255 (693)
T ss_dssp CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG---CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc---ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC
Confidence 7899 999988876 42 2677776654221 022333334 5556788999999998865432
Q ss_pred --CCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeC-C---CeEEEEECCC
Q psy15549 150 --ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSV-D---NTAIMWDVHK 223 (621)
Q Consensus 150 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~-d---g~i~vwd~~~ 223 (621)
...|+++|+.++... ...+..+....... |+++|..|+..+. + +.|..+|+.+
T Consensus 256 ~~~~~i~~~d~~~~~~~--------------------~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~ 314 (693)
T 3iuj_A 256 TSGNRLYVKDLSQENAP--------------------LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN 314 (693)
T ss_dssp SSCCEEEEEETTSTTCC--------------------CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred CCCcEEEEEECCCCCCc--------------------eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 348999998776421 13344555555554 6666666655443 3 6899999987
Q ss_pred CcE--EEEeccCCcceEEEEEcCCCCEEEEEeCCC---cEEEEEccCce
Q psy15549 224 GKN--LGILTEHKKFVQGVAWDPKNQYVATLSSDR---SLRTYSIQSKK 267 (621)
Q Consensus 224 ~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg---~i~iwd~~~~~ 267 (621)
+.. ...+..|...+. .|++++++|+....++ .|++|++..+.
T Consensus 315 ~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 315 PGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp CCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred CCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe
Confidence 654 344555665554 8999999887766543 68889887543
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.30 E-value=4.2e-10 Score=113.17 Aligned_cols=243 Identities=11% Similarity=0.033 Sum_probs=145.5
Q ss_pred CeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCC
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 94 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 94 (621)
....|+|+++++ ++++...++.|+ +||..++..... ... ..... ++|+++++
T Consensus 132 ~P~~la~d~~g~-----lyv~d~~~~~I~--------------~id~~~g~~~~~-------~~~-~~~~~-ia~~~~g~ 183 (409)
T 3hrp_A 132 YMWGIAAVGNNT-----VLAYQRDDPRVR--------------LISVDDNKVTTV-------HPG-FKGGK-PAVTKDKQ 183 (409)
T ss_dssp CEEEEEECSTTE-----EEEEETTTTEEE--------------EEETTTTEEEEE-------EET-CCBCB-CEECTTSS
T ss_pred CceEEEEeCCCC-----EEEEecCCCcEE--------------EEECCCCEEEEe-------ecc-CCCCc-eeEecCCC
Confidence 578999999997 888888888999 777765433211 111 22233 89999999
Q ss_pred EEEEEc-CC--ceEEEEeccCccccccceecccccc-cCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCC
Q psy15549 95 LLASGD-DV--GKEIWYLTERESGIANVEFASDLSR-HQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSS 170 (621)
Q Consensus 95 ~las~~-d~--~v~iw~~~~~~~~~~~~~~~~~~~~-h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 170 (621)
.|+++. ++ .|.+|+...... ......+.. ....+.+++++|++..|+.+..++.|+.||..++.... +.
T Consensus 184 ~l~~~d~~~~~~I~~~d~~~~~~----~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~-~~-- 256 (409)
T 3hrp_A 184 RVYSIGWEGTHTVYVYMKASGWA----PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL-IK-- 256 (409)
T ss_dssp EEEEEBSSTTCEEEEEEGGGTTC----EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE-EE--
T ss_pred cEEEEecCCCceEEEEEcCCCce----eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE-Ee--
Confidence 888877 34 455665543311 011111112 34567889999955556567778899999988664210 00
Q ss_pred CcccccccccceeeeeeecCCCCCe-E-EEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEeccCC-------------
Q psy15549 171 NLDEENVNKEHWIVTKILRGHLEDV-Y-DISWSPT-STHLISGSVDNTAIMWDVHKGKNLGILTEHK------------- 234 (621)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~v-~-~i~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------- 234 (621)
.....++...- . .++|+|+ +.++++-...+.|+.|+.... +..+.++.
T Consensus 257 --------------~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~ 320 (409)
T 3hrp_A 257 --------------QLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEA 320 (409)
T ss_dssp --------------ECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGC
T ss_pred --------------cccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCccccc
Confidence 00011222211 3 8999995 555555566789999987543 23332221
Q ss_pred --cceEEEEEcCCCCEEEEEe-CCCcEEEEEccCceeeeecccCCC-CCCCccccccccccccccCCcccceeeeeecCC
Q psy15549 235 --KFVQGVAWDPKNQYVATLS-SDRSLRTYSIQSKKVISRACRSKL-PVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPD 310 (621)
Q Consensus 235 --~~v~~l~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd 310 (621)
.....++++|+|+++++-. .++.|+.|++.++........... ....+. .....-.....++++++
T Consensus 321 ~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~----------~~~~~~~~P~giavd~~ 390 (409)
T 3hrp_A 321 LFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGT----------PLEATFNYPYDICYDGE 390 (409)
T ss_dssp BCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBS----------TTTCCBSSEEEEEECSS
T ss_pred EeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCC----------hhceEeCCceEEEEcCC
Confidence 3478999999999777766 788999999877764332211000 000000 00011124578999999
Q ss_pred CCeEEecc
Q psy15549 311 GQLLIAPS 318 (621)
Q Consensus 311 g~~l~~~s 318 (621)
|.++++-.
T Consensus 391 g~lyVad~ 398 (409)
T 3hrp_A 391 GGYWIAEA 398 (409)
T ss_dssp SEEEEEES
T ss_pred CCEEEEEC
Confidence 87776655
No 219
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.29 E-value=3.8e-09 Score=103.62 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=105.2
Q ss_pred EEc--cCCCEEEEEc--CCceEEEEeccCccccccceeccccc------c-cCCCeEEEEECCCCCEEEEEeCC------
Q psy15549 88 RFS--PNGELLASGD--DVGKEIWYLTERESGIANVEFASDLS------R-HQKAVNVVRFSPNGELLASGDDE------ 150 (621)
Q Consensus 88 ~~s--pdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~------~-h~~~V~~i~~sp~g~~l~s~s~d------ 150 (621)
.++ +++++|+..+ ++.|.++|+....... +....+. . ....-..+..+|+| +++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p---~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP---KIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGP 163 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC---EEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSC
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCc---eeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCC
Confidence 457 8899998876 7889999986442211 2222221 1 11244567889999 77776555
Q ss_pred CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe-------------------
Q psy15549 151 STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS------------------- 211 (621)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~------------------- 211 (621)
|.|.++|..+.+.+..++.. .....--+.+-|+|+++.+++..
T Consensus 164 g~v~vlD~~T~~v~~~~~~~------------------~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~ 225 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEID------------------RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDR 225 (462)
T ss_dssp CEEEEECTTTCCEEEECCSB------------------CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred CeEEEEECCCCeEEEEEccC------------------CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhc
Confidence 78999999988865333100 01112234688899999888875
Q ss_pred CCCeEEEEECCCCcEEEEeccC--CcceEEEEE--cCCCCEEEEEeC------CCcEEEEEccCce
Q psy15549 212 VDNTAIMWDVHKGKNLGILTEH--KKFVQGVAW--DPKNQYVATLSS------DRSLRTYSIQSKK 267 (621)
Q Consensus 212 ~dg~i~vwd~~~~~~~~~~~~~--~~~v~~l~~--sp~~~~l~s~~~------dg~i~iwd~~~~~ 267 (621)
....|.+||+.+++.+.++... ......+.| +|+++++++++. +++|.+|....+.
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~ 291 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK 291 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc
Confidence 3689999999998888877542 133455656 999999887774 5688887776543
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.28 E-value=4.4e-09 Score=102.49 Aligned_cols=148 Identities=11% Similarity=-0.014 Sum_probs=95.3
Q ss_pred EEEEEEccCCCEEE-EEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCC
Q psy15549 84 VNVVRFSPNGELLA-SGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTD 161 (621)
Q Consensus 84 V~~l~~spdg~~la-s~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~ 161 (621)
..+.+|+|++..|+ +.. ++.|.+|+...+. . ..+ .....+.+++|+++|+++++. .+ .|.+||..++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-------~-~~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g 119 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGR-------K-TVH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATG 119 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-------E-EEE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-------E-EEE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCC
Confidence 45678999865544 444 6778888877542 1 111 124579999999999877765 44 4999998776
Q ss_pred CCCCCCCCCCcccccccccceeeeeeec--CCCCCeEEEEECCCCCEEEEEeC------CCeEEEEECCCCcEEEEeccC
Q psy15549 162 QDLPEFPSSNLDEENVNKEHWIVTKILR--GHLEDVYDISWSPTSTHLISGSV------DNTAIMWDVHKGKNLGILTEH 233 (621)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~i~~spd~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~ 233 (621)
+... + .... .....+..++++|+|+++++... .+.|..++ +++.. .+..+
T Consensus 120 ~~~~-~------------------~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~ 177 (326)
T 2ghs_A 120 VLTL-H------------------AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD 177 (326)
T ss_dssp CEEE-E------------------ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE
T ss_pred cEEE-E------------------eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC
Confidence 5310 0 0011 11245889999999987665442 24566666 45433 33233
Q ss_pred CcceEEEEEcCCCCEEEEEe-CCCcEEEEEcc
Q psy15549 234 KKFVQGVAWDPKNQYVATLS-SDRSLRTYSIQ 264 (621)
Q Consensus 234 ~~~v~~l~~sp~~~~l~s~~-~dg~i~iwd~~ 264 (621)
......++|+|+++.|+.+. .++.|.+|++.
T Consensus 178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 34567899999999876554 46889999985
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.26 E-value=1.3e-09 Score=105.29 Aligned_cols=230 Identities=9% Similarity=0.023 Sum_probs=148.5
Q ss_pred ceeeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEE
Q psy15549 6 PEISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVN 85 (621)
Q Consensus 6 ~~~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 85 (621)
++.+..+.....+.+|+|+++ .+++++..++.|. .|+.. +.. . .+..+...+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~----~l~~~d~~~~~i~--------------~~~~~-g~~-~-------~~~~~~~~~~ 89 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQR----TLVWSDLVGRRVL--------------GWRED-GTV-D-------VLLDATAFTN 89 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGT----EEEEEETTTTEEE--------------EEETT-SCE-E-------EEEESCSCEE
T ss_pred eEEEecCCcCccCCeEeCCCC----EEEEEECCCCEEE--------------EEeCC-CCE-E-------EEeCCCCccc
Confidence 344555566788999999996 4667777888888 77653 221 1 2334566789
Q ss_pred EEEEccCCCEEEEEc-CCceEEEEeccCccccccceec-ccccc-cCCCeEEEEECCCCCEEEE----EeC---------
Q psy15549 86 VVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFA-SDLSR-HQKAVNVVRFSPNGELLAS----GDD--------- 149 (621)
Q Consensus 86 ~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~-~~~~~-h~~~V~~i~~sp~g~~l~s----~s~--------- 149 (621)
.++++++|+++++.. ++.|.+|+.. +.. ..+ ....+ ....+..+++.++|+++++ |..
T Consensus 90 gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~-----~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~ 163 (305)
T 3dr2_A 90 GNAVDAQQRLVHCEHGRRAITRSDAD-GQA-----HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPAD 163 (305)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCE-----EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCC
T ss_pred eeeECCCCCEEEEECCCCEEEEECCC-CCE-----EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccc
Confidence 999999999777665 5678888764 311 111 11111 1234678999999998886 332
Q ss_pred ----CCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCC------CeEEEE
Q psy15549 150 ----ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVD------NTAIMW 219 (621)
Q Consensus 150 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~d------g~i~vw 219 (621)
.+.|..||..+++.. .+. .......++|+||++.|+.+... +.|.+|
T Consensus 164 ~~~~~~~v~~~d~~~g~~~----------------------~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~ 220 (305)
T 3dr2_A 164 PELAHHSVYRLPPDGSPLQ----------------------RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAF 220 (305)
T ss_dssp CSSSCEEEEEECSSSCCCE----------------------EEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEE
T ss_pred cccCCCeEEEEcCCCCcEE----------------------EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEE
Confidence 245666666555421 112 33456889999999988877665 789999
Q ss_pred ECCCCcEE--EEe-ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccC
Q psy15549 220 DVHKGKNL--GIL-TEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDD 296 (621)
Q Consensus 220 d~~~~~~~--~~~-~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (621)
++..+... ..+ .........++++++|++.+ ++.+ .|.+|+. .++.+..+...
T Consensus 221 ~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~~~~~~~~--------------------- 276 (305)
T 3dr2_A 221 AWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQLLGHIPTP--------------------- 276 (305)
T ss_dssp EEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCEEEEEECS---------------------
T ss_pred EecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCEEEEEECC---------------------
Confidence 98765411 111 11234456789999999544 4444 4999998 45555544321
Q ss_pred CcccceeeeeecCCCCeEEecc
Q psy15549 297 TMKSFFRRLTFSPDGQLLIAPS 318 (621)
Q Consensus 297 ~~~~~i~~~~~spdg~~l~~~s 318 (621)
..+.+++|+++++.|++++
T Consensus 277 ---~~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 277 ---GTASNCTFDQAQQRLFITG 295 (305)
T ss_dssp ---SCCCEEEECTTSCEEEEEE
T ss_pred ---CceeEEEEeCCCCEEEEEc
Confidence 1247899999998887766
No 222
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.26 E-value=1.7e-10 Score=117.16 Aligned_cols=214 Identities=9% Similarity=0.044 Sum_probs=136.5
Q ss_pred ccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccc------------cc------cCcE
Q psy15549 23 LKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLS------------RH------QKAV 84 (621)
Q Consensus 23 pd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~------------~h------~~~V 84 (621)
|-|+.|.++.+.+|+..|.++||=+.+.+.+..|-+++......--..-+....|. .+ .+..
T Consensus 8 ~~g~~d~~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~ 87 (595)
T 1fwx_A 8 APGQLDDYYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDL 87 (595)
T ss_dssp CTTCCCSEEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCB
T ss_pred CCCCcccEEEEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCC
Confidence 44556778899999999999999999998888777777653221000000001111 01 1222
Q ss_pred EEEEEcc-----CCCEEEEEc--CCceEEEEeccCccccccceecc--cccccCCCeEEEEE-C-CCCCEEEEEeC----
Q psy15549 85 NVVRFSP-----NGELLASGD--DVGKEIWYLTERESGIANVEFAS--DLSRHQKAVNVVRF-S-PNGELLASGDD---- 149 (621)
Q Consensus 85 ~~l~~sp-----dg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~--~~~~h~~~V~~i~~-s-p~g~~l~s~s~---- 149 (621)
.....|. ||++|..+. ++.|.+.|+... +... .+.. ...+..+++ + |+++++++++.
T Consensus 88 hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~-------~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p 159 (595)
T 1fwx_A 88 HHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVM-------KCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETP 159 (595)
T ss_dssp CCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTT-------EEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEE
T ss_pred CccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCc-------eEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccc
Confidence 2345555 889988877 445888888876 3333 2221 235778888 5 89999988852
Q ss_pred --------------CCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCC-
Q psy15549 150 --------------ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDN- 214 (621)
Q Consensus 150 --------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg- 214 (621)
++.+.++|..+.+....+ .-+. ....++++|+|+++++.+.+.
T Consensus 160 ~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI--------------------~Vgg--~pd~~~~spdGk~~~vt~~~se 217 (595)
T 1fwx_A 160 LVNDGTNMEDVANYVNVFTAVDADKWEVAWQV--------------------LVSG--NLDNCDADYEGKWAFSTSYNSE 217 (595)
T ss_dssp SSCSSSSTTCGGGEEEEEEEEETTTTEEEEEE--------------------EESS--CCCCEEECSSSSEEEEEESCTT
T ss_pred cCCCCcccccccccCceEEEEECCCCeEEEEE--------------------EeCC--CccceEECCCCCEEEEEecCcc
Confidence 356888888876543211 1111 345577888888888877543
Q ss_pred -------------------------------------eEEEEECCC--CcE-EEEeccCCcceEEEEEcCCCCEEEEEe-
Q psy15549 215 -------------------------------------TAIMWDVHK--GKN-LGILTEHKKFVQGVAWDPKNQYVATLS- 253 (621)
Q Consensus 215 -------------------------------------~i~vwd~~~--~~~-~~~~~~~~~~v~~l~~sp~~~~l~s~~- 253 (621)
.|.|.|..+ ++. +..+.. .....++.++|||+++++++
T Consensus 218 ~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~ 296 (595)
T 1fwx_A 218 KGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGK 296 (595)
T ss_dssp CCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECT
T ss_pred cCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCC
Confidence 366777766 444 344432 23456899999999987665
Q ss_pred CCCcEEEEEccCce
Q psy15549 254 SDRSLRTYSIQSKK 267 (621)
Q Consensus 254 ~dg~i~iwd~~~~~ 267 (621)
.+.+|.++|+.+.+
T Consensus 297 ~s~~VsVid~~~~~ 310 (595)
T 1fwx_A 297 LSPTVTVLDVTRFD 310 (595)
T ss_dssp TSSBEEEEEGGGHH
T ss_pred CCCeEEEEECcccc
Confidence 47899999998653
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.19 E-value=2.2e-09 Score=105.55 Aligned_cols=260 Identities=9% Similarity=0.033 Sum_probs=147.8
Q ss_pred CCeEEEeccccccCCcceEEEEec--CCceEEeeeccCccccccceeEEecccccccccee-eccccccccCcEEEEEEc
Q psy15549 14 DPVLSVDIQLKQEKDNCYRIVTGG--ADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVE-FASDLSRHQKAVNVVRFS 90 (621)
Q Consensus 14 ~~v~~l~~spd~~~~~~~~l~tg~--~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~-~~~~~~~h~~~V~~l~~s 90 (621)
.....|+++|+|+ ++++.. .++.++ ||.+.++... .+. .......|...+..++++
T Consensus 17 ~~p~~va~~~~g~-----~~v~~~~~~~~~~~--------------l~~~~~g~~~--~~p~~~~~~~~~~~~p~gv~~d 75 (343)
T 2qe8_A 17 LAPGNITLTPDGR-----LFLSLHQFYQPEMQ--------------VAELTQDGLI--PFPPQSGNAIITFDTVLGIKSD 75 (343)
T ss_dssp SCEEEEEECTTSC-----EEEEECGGGCCSCS--------------EEEEETTEEE--ESCCCCSSCCCCCSCEEEEEEC
T ss_pred CCcceEEECCCCC-----EEEEeCCCCCCceE--------------EEEECCCCee--cCCCcccCcccceeEeeEEEEc
Confidence 6799999999998 887753 234355 5555422110 000 001123466789999999
Q ss_pred cCCCEEEEEc------CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEE-EEEe---CCCcEEEEEccC
Q psy15549 91 PNGELLASGD------DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELL-ASGD---DESTIIVWKQKT 160 (621)
Q Consensus 91 pdg~~las~~------d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l-~s~s---~dg~i~vwd~~~ 160 (621)
++|+++++.. +..|.+||+.++.. ...+........+...+..+++++++..+ ++.. .++.|.+||+.+
T Consensus 76 ~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~ 154 (343)
T 2qe8_A 76 GNGIVWMLDNGNQSKSVPKLVAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT 154 (343)
T ss_dssp SSSEEEEEECHHHHTSCCEEEEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred CCCcEEEEcCCCCcCCCCeEEEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence 9998777643 36788999876521 00000001111233457899999865444 4544 578999999987
Q ss_pred CCCCCCCCCC-Cccc--ccc--cccceeee---eeecCCCCCeEEEEECCCCCEEEEEeCCC-eEEEEECC---CCc---
Q psy15549 161 DQDLPEFPSS-NLDE--ENV--NKEHWIVT---KILRGHLEDVYDISWSPTSTHLISGSVDN-TAIMWDVH---KGK--- 225 (621)
Q Consensus 161 ~~~~~~~~~~-~~~~--~~~--~~~~~~~~---~~~~~~~~~v~~i~~spd~~~l~s~~~dg-~i~vwd~~---~~~--- 225 (621)
++....+... .... ... ....+... .........+..|+|+||++.|+++...+ .+..++.. .+.
T Consensus 155 g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~ 234 (343)
T 2qe8_A 155 GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTD 234 (343)
T ss_dssp CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCH
T ss_pred CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCCh
Confidence 7543322110 0000 000 00000000 00000113468899999999888887765 55555432 111
Q ss_pred -----EEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCccc
Q psy15549 226 -----NLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKS 300 (621)
Q Consensus 226 -----~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (621)
.+.. .++......++++++|+++++...++.|.+||..+++...... ...-.
T Consensus 235 ~~~~~~~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----------------------~~~~~ 291 (343)
T 2qe8_A 235 AELGSKIER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----------------------DEKLS 291 (343)
T ss_dssp HHHHTTCEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----------------------CGGGS
T ss_pred hhhhcceEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----------------------CCcee
Confidence 0011 1233345679999999988888889999999985555322211 01122
Q ss_pred ceeeeeecCCCCeEEecc
Q psy15549 301 FFRRLTFSPDGQLLIAPS 318 (621)
Q Consensus 301 ~i~~~~~spdg~~l~~~s 318 (621)
...+++|.++|.++++.+
T Consensus 292 ~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 292 WTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp CEEEEEECTTSCEEEEEC
T ss_pred cCCeeEECCCCcEEEEeC
Confidence 457899999998777765
No 224
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.18 E-value=1.7e-09 Score=107.55 Aligned_cols=202 Identities=12% Similarity=0.013 Sum_probs=123.4
Q ss_pred EEEEccCCCEEEEEc-----------CCceEEEEeccCccccccceeccccccc-------CCCeEEEEECCCCCEEEEE
Q psy15549 86 VVRFSPNGELLASGD-----------DVGKEIWYLTERESGIANVEFASDLSRH-------QKAVNVVRFSPNGELLASG 147 (621)
Q Consensus 86 ~l~~spdg~~las~~-----------d~~v~iw~~~~~~~~~~~~~~~~~~~~h-------~~~V~~i~~sp~g~~l~s~ 147 (621)
.++++|||++|+++. ++.|.++|..+. +....+.-. ......++|+|||++|+++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~-------~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~ 194 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF-------LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFY 194 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-------CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC-------cEEEEEECCCccccccCCCcceEEEcCCCCEEEEE
Confidence 799999999887764 456888988776 223322110 1234568999999999988
Q ss_pred eC--CCcEEEEEccCCCCCCCCCCCCccc-cccc---------ccceeeeee------------ecCCCCC-eEEEEECC
Q psy15549 148 DD--ESTIIVWKQKTDQDLPEFPSSNLDE-ENVN---------KEHWIVTKI------------LRGHLED-VYDISWSP 202 (621)
Q Consensus 148 s~--dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~------------~~~~~~~-v~~i~~sp 202 (621)
.. ++.|.+.|+.+.+.+..++...... .... ...+..... +...... ...+.|.+
T Consensus 195 n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~ 274 (426)
T 3c75_H 195 QFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSL 274 (426)
T ss_dssp ECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECT
T ss_pred ecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecC
Confidence 74 5789999999998776664422100 0000 000000000 0000000 01245688
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEE--Eec---c-------CCcceEEEEEcCCCCEEEEEeC----------CCcEEE
Q psy15549 203 TSTHLISGSVDNTAIMWDVHKGKNLG--ILT---E-------HKKFVQGVAWDPKNQYVATLSS----------DRSLRT 260 (621)
Q Consensus 203 d~~~l~s~~~dg~i~vwd~~~~~~~~--~~~---~-------~~~~v~~l~~sp~~~~l~s~~~----------dg~i~i 260 (621)
++..++..+..+.|.+.|+....... .+. . .......++++|+++++++... ++.|.+
T Consensus 275 dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsV 354 (426)
T 3c75_H 275 RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVV 354 (426)
T ss_dssp TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEE
Confidence 88877777788899999986543211 110 0 0111223789999988777643 357999
Q ss_pred EEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCC-eEEecc
Q psy15549 261 YSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQ-LLIAPS 318 (621)
Q Consensus 261 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~-~l~~~s 318 (621)
+|+.+.+.+..+... ....+++|+|||+ +++++.
T Consensus 355 ID~~T~kvv~~I~vg------------------------~~P~gia~spDg~~~lyv~n 389 (426)
T 3c75_H 355 LNAETGERINKIELG------------------------HEIDSINVSQDAEPLLYALS 389 (426)
T ss_dssp EETTTCCEEEEEEEE------------------------EEECEEEECCSSSCEEEEEE
T ss_pred EECCCCeEEEEEECC------------------------CCcCeEEEccCCCEEEEEEc
Confidence 999999988877422 1247899999998 666544
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=1.4e-09 Score=106.37 Aligned_cols=274 Identities=10% Similarity=-0.079 Sum_probs=161.2
Q ss_pred ceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe----------CCCcEEEEEccCCCCCCCCCCCCc
Q psy15549 103 GKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD----------DESTIIVWKQKTDQDLPEFPSSNL 172 (621)
Q Consensus 103 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~~ 172 (621)
.|.++|..+. +.+..+.....+ .+.++||+++++++. .++.|.+||+.+.+.+..++
T Consensus 47 ~vsvID~~t~-------~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~---- 113 (368)
T 1mda_H 47 ENWVSCAGCG-------VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE---- 113 (368)
T ss_dssp EEEEEETTTT-------EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE----
T ss_pred eEEEEECCCC-------eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE----
Confidence 6778888776 555666555555 799999999888876 36789999999998653321
Q ss_pred ccccccccceeeeeeec-CC----CCCeEEEEECCCCCEEEEEeC--CCeEEE--EECCCCcEEEEeccCCcceEEEEEc
Q psy15549 173 DEENVNKEHWIVTKILR-GH----LEDVYDISWSPTSTHLISGSV--DNTAIM--WDVHKGKNLGILTEHKKFVQGVAWD 243 (621)
Q Consensus 173 ~~~~~~~~~~~~~~~~~-~~----~~~v~~i~~spd~~~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~v~~l~~s 243 (621)
+. +. ......++++|||++|+++.. ...|.+ +|+.+ +..+... +. +.+.
T Consensus 114 ---------------v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~ 171 (368)
T 1mda_H 114 ---------------LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIH 171 (368)
T ss_dssp ---------------ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCE
T ss_pred ---------------CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEc
Confidence 11 00 123567999999999999875 467888 98877 3444221 11 1233
Q ss_pred CCC-CEEEEEeCCCcEEEEEccC-----ceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEec
Q psy15549 244 PKN-QYVATLSSDRSLRTYSIQS-----KKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAP 317 (621)
Q Consensus 244 p~~-~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 317 (621)
|++ ..+++.+.||.+.+.|+.+ ++...... ...++ . ..+. . ++++..++..
T Consensus 172 p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i~v----------------g--~~P~---~-~~~~~~~~~v 228 (368)
T 1mda_H 172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-GAQNC----------------S--SQAA---Q-ANYPGMLVWA 228 (368)
T ss_dssp EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-TTSCB----------------C--SCCE---E-ETTTTEEEEC
T ss_pred cCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-eeeeC----------------C--CCcc---c-cccCCEEEEE
Confidence 544 3455566788888888876 44322110 00000 0 0111 3 5666666665
Q ss_pred cccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCC-CCccCCCcEEEEEEc-------
Q psy15549 318 SGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDK-PLFKLPYRIVIAVAT------- 389 (621)
Q Consensus 318 s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~------- 389 (621)
+ . +.+.+.+........ .... .+.. .......+.| .+.. ..+.++++.++++..
T Consensus 229 s-----~-~~V~viD~~~~~~~v--~~~~-~~~~--~~~~~~~~~p-------~g~~~v~~s~dg~~lyV~~~~~~~~~~ 290 (368)
T 1mda_H 229 V-----A-SSILQGDIPAAGATM--KAAI-DGNE--SGRKADNFRS-------AGFQMVAKLKNTDGIMILTVEHSRSCL 290 (368)
T ss_dssp B-----S-SCCEEEECCSSCCEE--ECCC-CSSC--THHHHTTEEE-------CSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred c-----C-CEEEEEECCCCcceE--EEEE-Eecc--cccccccccc-------CcceeeEEcCCCCEEEEEeccccCccc
Confidence 5 4 555555542100000 0000 0000 0000000000 0000 113336666666543
Q ss_pred --CCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCe-EEEEe-CCCcEEEEEecCCcCCcccCCCC
Q psy15549 390 --ENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKV-LIASS-TDGYCSIISFGDNEIGIPYVPPS 454 (621)
Q Consensus 390 --dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~-l~s~s-~dg~i~iw~~~~~~~~~~~~~~~ 454 (621)
++.+.++|+.+.+.+..+..+. ....|+|+|||++ +++.. .++.|.++|+.+++....+....
T Consensus 291 ~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 291 AAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred ccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence 2356699999999988886433 6889999999984 55666 59999999999999888776544
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.15 E-value=9.3e-10 Score=118.22 Aligned_cols=390 Identities=13% Similarity=0.093 Sum_probs=193.8
Q ss_pred EEEEecCCceEEeeeccCccccccceeEEeccccccccceeecccccccc-CcE-EEEEEccCCCEEEEEc-CCceEEEE
Q psy15549 32 RIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQ-KAV-NVVRFSPNGELLASGD-DVGKEIWY 108 (621)
Q Consensus 32 ~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~spdg~~las~~-d~~v~iw~ 108 (621)
.|++++.++.|..+|..+.+. +|.......... ..... ..+ ..+++ .+..|+.++ ++.+..+|
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~-----~W~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlD 137 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRL-----IWKYDPQSDRHR-------AGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAID 137 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCE-----EEEECCCCCGGG-------GGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCce-----eEEEcCCCCccc-------cccccccCCCCccEE--ECCEEEEEccCCEEEEEE
Confidence 777788888999777776654 777654322110 00000 000 11111 234455554 77788888
Q ss_pred eccCccccccceecccccc--cCCCeEEEEECC---CCCEEEEEe------CCCcEEEEEccCCCCCCCCCCCC--cccc
Q psy15549 109 LTERESGIANVEFASDLSR--HQKAVNVVRFSP---NGELLASGD------DESTIIVWKQKTDQDLPEFPSSN--LDEE 175 (621)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~--h~~~V~~i~~sp---~g~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~~--~~~~ 175 (621)
..++.. +..... +......+..+| ++ .++.++ .+|.|+.||..+++.+-.+.... ....
T Consensus 138 a~TG~~-------~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~ 209 (689)
T 1yiq_A 138 AKTGQR-------AWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLP 209 (689)
T ss_dssp TTTCCE-------EEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC
T ss_pred CCCCCE-------eeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccc
Confidence 776632 211111 100001111112 44 444443 36899999999998754332100 0000
Q ss_pred ----c--ccccceeee--eeecCCCCCeEEEEECCCCCEEEEEeCCCe-------------------EEEEECCCCcEEE
Q psy15549 176 ----N--VNKEHWIVT--KILRGHLEDVYDISWSPTSTHLISGSVDNT-------------------AIMWDVHKGKNLG 228 (621)
Q Consensus 176 ----~--~~~~~~~~~--~~~~~~~~~v~~i~~spd~~~l~s~~~dg~-------------------i~vwd~~~~~~~~ 228 (621)
. .....|.-. ....++......++++|++.+++.++.++. |..||..+|+.+.
T Consensus 210 ~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W 289 (689)
T 1yiq_A 210 PEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVW 289 (689)
T ss_dssp CCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEE
T ss_pred cccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeE
Confidence 0 000000000 000011222236788898889998887763 9999999999988
Q ss_pred Eecc--CC-------cceEEEEEcCCCC---EEEEEeCCCcEEEEEccCceeeeecccCCCCCCC------ccccccccc
Q psy15549 229 ILTE--HK-------KFVQGVAWDPKNQ---YVATLSSDRSLRTYSIQSKKVISRACRSKLPVDS------SHELFDKVV 290 (621)
Q Consensus 229 ~~~~--~~-------~~v~~l~~sp~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 290 (621)
.+.. |. ..+.......+|+ .++.++.+|.++++|..+|+.+............ .........
T Consensus 290 ~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~ 369 (689)
T 1yiq_A 290 HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEEN 369 (689)
T ss_dssp EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHH
T ss_pred eeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhh
Confidence 7753 21 1122222223564 7888999999999999999988654332211000 000000000
Q ss_pred cc-ccc-------C--CcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCccccee-ee
Q psy15549 291 PL-FHD-------D--TMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSV-AV 359 (621)
Q Consensus 291 ~~-~~~-------~--~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 359 (621)
.. +.. . ........++|+|+..++++.. .+.....+.... .+..........+. .+
T Consensus 370 ~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~-----~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~ 436 (689)
T 1yiq_A 370 AAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPA-----HIMSAYYEHIPE--------APKRNPFKSMYQLGLRT 436 (689)
T ss_dssp HCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEE-----EECCEEEECCSS--------CCCCCSCTTSCCCSSEE
T ss_pred ccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEec-----cccceeeeeccc--------cccccccccccccCccc
Confidence 00 000 0 0001123478899888887765 221111111100 00000000000000 00
Q ss_pred eccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEE
Q psy15549 360 KCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSII 439 (621)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw 439 (621)
...| .. ..+........+|.|+.||+.+++.+-.+.. ..++....++..|.++++++.||.|+.|
T Consensus 437 ~~~p-------~~------~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~gt~dg~l~a~ 501 (689)
T 1yiq_A 437 GMMP-------EG------AEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--VTIFNGGTLSTAGNLVFEGSADGRVIAY 501 (689)
T ss_dssp CCCC-------SS------HHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred cccC-------cc------cccCCCCCCCcceeEEEEECCCCCeEeEccC--CCCccCccceECCCEEEEECCCCcEEEE
Confidence 0000 00 0000000000247899999999998877743 2334444666678899999999999999
Q ss_pred EecCCcCCcccCCCCCcc-cccCCCCCCCCccc
Q psy15549 440 SFGDNEIGIPYVPPSGEE-SKENDPTKGEPVRS 471 (621)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s 471 (621)
|..+|+.+-.+..+.+.. .-+.+..+|+..+.
T Consensus 502 D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 502 AADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 999999887776654433 33444577774443
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.10 E-value=8.2e-09 Score=100.84 Aligned_cols=301 Identities=8% Similarity=-0.002 Sum_probs=171.5
Q ss_pred EEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCCEEE
Q psy15549 18 SVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLA 97 (621)
Q Consensus 18 ~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 97 (621)
++.+..++ .|.+++.++.|. .|| .+++.... ...+...+.++...++|.+++
T Consensus 24 ~~~~d~~g------~l~v~t~~~~l~--------------~~d-~~g~~~~~-------~~~~~~~~~~~~~~~~g~l~v 75 (330)
T 3hxj_A 24 SPILAKNG------TIYLGSSNKNLY--------------AIN-TDGSVKWF-------FKSGEIIECRPSIGKDGTIYF 75 (330)
T ss_dssp CCEECTTS------CEECSSTTTTTE--------------EEC-TTSCEEES-------SCGGGEEEECCEETTTTEECC
T ss_pred CceEccCC------eEEEEcCCCEEE--------------EEC-CCCcEEEE-------EecCCCcccceEEecCCcEEE
Confidence 34454555 677777788777 555 33332111 122334567777777776544
Q ss_pred EEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccc
Q psy15549 98 SGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENV 177 (621)
Q Consensus 98 s~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 177 (621)
++.+ +..++. .+ .....+...........+. +..|..++.++.|..+|.. ++..
T Consensus 76 -~t~~-l~~~d~-~g-------~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~------------- 129 (330)
T 3hxj_A 76 -GSDK-VYAINP-DG-------TEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEK------------- 129 (330)
T ss_dssp -SSCE-EEEECC-CG-------GGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEE-------------
T ss_pred -ecCc-EEEECC-CC-------cEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEE-------------
Confidence 4444 666664 22 1122222222222223333 4567778888999999987 5432
Q ss_pred cccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCCc
Q psy15549 178 NKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRS 257 (621)
Q Consensus 178 ~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~ 257 (621)
.....+...+.++...+++. |..++.++.|..||.. ++.+..+......+.++.+.+++..++ ++ +.
T Consensus 130 --------~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~ 196 (330)
T 3hxj_A 130 --------WRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DK 196 (330)
T ss_dssp --------EEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SS
T ss_pred --------EEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CE
Confidence 12222334455666777776 6667778999999998 877777665566677788878887554 44 78
Q ss_pred EEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeee
Q psy15549 258 LRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVF 337 (621)
Q Consensus 258 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~ 337 (621)
|..|| .+++.+...... ...+.++...++|...+... ++.+..++....
T Consensus 197 l~~~d-~~g~~~~~~~~~-----------------------~~~~~~~~~~~~g~l~v~t~------~~gl~~~~~~g~- 245 (330)
T 3hxj_A 197 VYAIN-PDGTEKWNFYAG-----------------------YWTVTRPAISEDGTIYVTSL------DGHLYAINPDGT- 245 (330)
T ss_dssp EEEEC-TTSCEEEEECCS-----------------------SCCCSCCEECTTSCEEEEET------TTEEEEECTTSC-
T ss_pred EEEEC-CCCcEEEEEccC-----------------------CcceeceEECCCCeEEEEcC------CCeEEEECCCCC-
Confidence 99999 666655444211 12356778888876555432 333333321100
Q ss_pred eecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEE
Q psy15549 338 TRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTD 417 (621)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~ 417 (621)
........... ........++.+.+++.+|.|+.+|. +++.+..... ....+.+
T Consensus 246 -------~~~~~~~~~~~-----------------~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~-~~~~~~~ 299 (330)
T 3hxj_A 246 -------EKWRFKTGKRI-----------------ESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFET-GSWIIAT 299 (330)
T ss_dssp -------EEEEEECSSCC-----------------CSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEEC-SSCCCSC
T ss_pred -------EeEEeeCCCCc-----------------cccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEc-CCccccc
Confidence 00000000000 00011123467888888889999996 6766665532 4456778
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEEecC
Q psy15549 418 ITWSSDGKVLIASSTDGYCSIISFGD 443 (621)
Q Consensus 418 ~~~spdg~~l~s~s~dg~i~iw~~~~ 443 (621)
+...++|+ |..++.+|.+++.....
T Consensus 300 ~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 300 PVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp CEECTTCC-EEEECTTSCEEEEEC--
T ss_pred eEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 88888886 55688999999887653
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.08 E-value=1.2e-08 Score=100.19 Aligned_cols=254 Identities=13% Similarity=0.137 Sum_probs=146.5
Q ss_pred eecCCCC-----eEEEecc--ccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeec--cccc-
Q psy15549 9 SWHNRDP-----VLSVDIQ--LKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFA--SDLS- 78 (621)
Q Consensus 9 ~~~h~~~-----v~~l~~s--pd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~--~~~~- 78 (621)
..||.++ ..+.+++ ++++ .+++.|..++.|. |.|+.+........+.+ .++.
T Consensus 72 e~HH~gwn~css~~~~~~~~~~~r~----~l~v~~l~s~~I~--------------viD~~t~p~~p~~~k~ie~~~~~~ 133 (462)
T 2ece_A 72 ELHHFGWNACSSALCPNGKPNIERR----FLIVPGLRSSRIY--------------IIDTKPNPREPKIIKVIEPEEVKK 133 (462)
T ss_dssp CBCCCEESCCGGGGSTTCCTTCCSC----EEEEEBTTTCCEE--------------EEECCSCTTSCEEEEEECHHHHHH
T ss_pred cccccchhhhhhhcccccCCCccCC----EEEEccCCCCeEE--------------EEECCCCCCCceeeeeechhhccc
Confidence 3566543 3444567 7777 5666677889999 55543322111101111 0010
Q ss_pred -cccCcEEEEEEccCCCEEEEEc-C------CceEEEEeccCccccccceecccccc--cC-CCeEEEEECCCCCEEEEE
Q psy15549 79 -RHQKAVNVVRFSPNGELLASGD-D------VGKEIWYLTERESGIANVEFASDLSR--HQ-KAVNVVRFSPNGELLASG 147 (621)
Q Consensus 79 -~h~~~V~~l~~spdg~~las~~-d------~~v~iw~~~~~~~~~~~~~~~~~~~~--h~-~~V~~i~~sp~g~~l~s~ 147 (621)
.....-..+..+|+| +++++. + +++.++|..+. +.+..+.. .. ..-..+.|+|+++.+++.
T Consensus 134 ~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~-------~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS 205 (462)
T 2ece_A 134 VSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF-------EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSS 205 (462)
T ss_dssp HHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC-------CEEEECCSBCTTCCCCCCEEEETTTTEEEEC
T ss_pred ccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC-------eEEEEEccCCCCccccceEEECCCCCEEEEc
Confidence 011234567788999 666543 3 57888888765 33333331 21 223458889999988887
Q ss_pred e-------------------CCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecC--CCCCeEEEEE--CCCC
Q psy15549 148 D-------------------DESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRG--HLEDVYDISW--SPTS 204 (621)
Q Consensus 148 s-------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~--spd~ 204 (621)
. .+.+|.+||+.+++.+. .+.. .......+.| +|++
T Consensus 206 ~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~---------------------tI~vg~~g~~P~~i~f~~~Pdg 264 (462)
T 2ece_A 206 EWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH---------------------SLTLGEENRMALELRPLHDPTK 264 (462)
T ss_dssp BCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE---------------------EEESCTTEEEEEEEEECSSTTC
T ss_pred cCcCccccccccchhhhhhccCCEEEEEECCCCcEee---------------------EEecCCCCCccceeEeeECCCC
Confidence 4 36799999999865432 2221 1223455555 9999
Q ss_pred CEEEEEeC------CCeEEEEECCCCcE--EEE--eccC----------------CcceEEEEEcCCCCEEEEEeC-CCc
Q psy15549 205 THLISGSV------DNTAIMWDVHKGKN--LGI--LTEH----------------KKFVQGVAWDPKNQYVATLSS-DRS 257 (621)
Q Consensus 205 ~~l~s~~~------dg~i~vwd~~~~~~--~~~--~~~~----------------~~~v~~l~~sp~~~~l~s~~~-dg~ 257 (621)
+++++++. +++|.+|....+.. .+. +... ......+.++|||++|+++.. .+.
T Consensus 265 ~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~ 344 (462)
T 2ece_A 265 LMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGE 344 (462)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTE
T ss_pred CEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCE
Confidence 98888774 56888776655421 111 1110 234678999999999988776 689
Q ss_pred EEEEEccC---ceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecc
Q psy15549 258 LRTYSIQS---KKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPS 318 (621)
Q Consensus 258 i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s 318 (621)
|.+||+.. .+.+..+.....- ...+ .. ........-+.++++|||++|+++.
T Consensus 345 VavfdV~d~~~~~lv~~I~tGG~~-----~~~~---~~-~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 345 VRQYDISNPFKPVLTGKVKLGGIF-----HRAD---HP-AGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEECSSTTSCEEEEEEECBTTT-----TCBC---CT-TSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEecCCCCcEEEEEEEeCCee-----cccc---cc-ccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999863 3444443321100 0000 00 0011122347899999999999876
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.07 E-value=9.2e-08 Score=95.27 Aligned_cols=309 Identities=11% Similarity=0.037 Sum_probs=164.5
Q ss_pred EEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCCEEEEEcCCceEEEEecc
Q psy15549 32 RIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGKEIWYLTE 111 (621)
Q Consensus 32 ~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~d~~v~iw~~~~ 111 (621)
.|++++.++.|..||..+.+. +|.......... .......+.+.-...++.+++...++.+..+|..+
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~-----~W~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~t 122 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKE-----IWSVSLAEKDGW-------FSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSD 122 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCE-----EEEEECCC---C-------CSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCCeEEEEEccCCce-----eeeecCcccccc-------ccccCcccccCceEeCCEEEEEcCCCEEEEEECCC
Confidence 788888899999666655543 565543221000 00001223222222344444444477888888877
Q ss_pred CccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCC
Q psy15549 112 RESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGH 191 (621)
Q Consensus 112 ~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (621)
+. ................. .+..++.++.++.|..+|..+++.+..+..... .......
T Consensus 123 G~-------~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~------------~~~~~~~ 181 (376)
T 3q7m_A 123 GT-------VAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMP------------SLSLRGE 181 (376)
T ss_dssp CC-------EEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----------------CCC
T ss_pred CC-------EEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC------------ceeecCC
Confidence 63 22222211111111112 245788888899999999988875421100000 0000001
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcc----------e-EEEEEcCCCCEEEEEeCCCcEEE
Q psy15549 192 LEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKF----------V-QGVAWDPKNQYVATLSSDRSLRT 260 (621)
Q Consensus 192 ~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----------v-~~l~~sp~~~~l~s~~~dg~i~i 260 (621)
.. ... .+..+++++.++.|..+|..+++.+......... + ..... .+..++.++.++.+..
T Consensus 182 ~~----~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 182 SA----PTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTA 253 (376)
T ss_dssp CC----CEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEE
T ss_pred CC----cEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEE
Confidence 11 111 1346788888999999999999987766432110 0 11111 2566777888999999
Q ss_pred EEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeec
Q psy15549 261 YSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRA 340 (621)
Q Consensus 261 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~ 340 (621)
+|..+++.+...... ....+.. ++..+++++ .++.+..++.......-
T Consensus 254 ~d~~tG~~~w~~~~~-------------------------~~~~~~~--~~~~l~~~~-----~~g~l~~~d~~tG~~~w 301 (376)
T 3q7m_A 254 LDLRSGQIMWKRELG-------------------------SVNDFIV--DGNRIYLVD-----QNDRVMALTIDGGVTLW 301 (376)
T ss_dssp EETTTCCEEEEECCC-------------------------CEEEEEE--ETTEEEEEE-----TTCCEEEEETTTCCEEE
T ss_pred EECCCCcEEeeccCC-------------------------CCCCceE--ECCEEEEEc-----CCCeEEEEECCCCcEEE
Confidence 999999877654311 0122222 244555555 45555555532111000
Q ss_pred ccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceE-EEE
Q psy15549 341 CLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLT-DIT 419 (621)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~-~~~ 419 (621)
........ ....|. ..++.+++++.+|.|+.+|..+++.+..... ....+. ...
T Consensus 302 -------~~~~~~~~---~~~~~~--------------~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~-~~~~~~~~~~ 356 (376)
T 3q7m_A 302 -------TQSDLLHR---LLTSPV--------------LYNGNLVVGDSEGYLHWINVEDGRFVAQQKV-DSSGFQTEPV 356 (376)
T ss_dssp -------EECTTTTS---CCCCCE--------------EETTEEEEECTTSEEEEEETTTCCEEEEEEC-CTTCBCSCCE
T ss_pred -------eecccCCC---cccCCE--------------EECCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCcceeCCE
Confidence 00000000 000011 1246788888999999999999998877643 222222 222
Q ss_pred EcCCCCeEEEEeCCCcEEEEE
Q psy15549 420 WSSDGKVLIASSTDGYCSIIS 440 (621)
Q Consensus 420 ~spdg~~l~s~s~dg~i~iw~ 440 (621)
. .+..|+.++.+|.|+.|+
T Consensus 357 ~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 357 A--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp E--ETTEEEEEBTTSCEEEEE
T ss_pred E--ECCEEEEEeCCCEEEEEe
Confidence 2 245788888999999987
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.03 E-value=1.5e-08 Score=108.65 Aligned_cols=388 Identities=11% Similarity=0.036 Sum_probs=197.1
Q ss_pred EEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCCEEEEEc-CCceEEEEec
Q psy15549 32 RIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-DVGKEIWYLT 110 (621)
Q Consensus 32 ~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-d~~v~iw~~~ 110 (621)
.|++++.++.|..+|..+.+. +|.......... ......+ .....+++ ++..|+.++ ++.+..+|..
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~-----~W~~~~~~~~~~----~~~~~~~-~~~~~~a~--~~~~v~v~~~dg~l~alD~~ 146 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNR-----IWTYDPQIDRST----GFKGCCD-VVNRGVAL--WKGKVYVGAWDGRLIALDAA 146 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEE-----EEEECCCCCGGG----GGGSSSC-SCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred EEEEECCCCeEEEEECCCCcE-----EEEEcCCCCccc----ccccccc-CCCCCceE--ECCEEEEEcCCCEEEEEECC
Confidence 677777788888777766654 777654432110 0000000 00011222 244555544 7778888877
Q ss_pred cCccccccceeccccccc-C----CCeEE-EEECCCCCEEEEEeC------CCcEEEEEccCCCCCCCCCCCCccc-cc-
Q psy15549 111 ERESGIANVEFASDLSRH-Q----KAVNV-VRFSPNGELLASGDD------ESTIIVWKQKTDQDLPEFPSSNLDE-EN- 176 (621)
Q Consensus 111 ~~~~~~~~~~~~~~~~~h-~----~~V~~-i~~sp~g~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~-~~- 176 (621)
++. .+..+..+ . ..+.. ... .+..++.++. ++.|+.||..+++.+-.+....... ..
T Consensus 147 tG~-------~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~ 217 (677)
T 1kb0_A 147 TGK-------EVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPF 217 (677)
T ss_dssp TCC-------EEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred CCC-------EEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccc
Confidence 663 22222211 0 11111 111 2345555543 6899999999998764332111000 00
Q ss_pred ------ccccceee-eeee--cCCCCCeEEEEECCCCCEEEEEeCCC-------------------eEEEEECCCCcEEE
Q psy15549 177 ------VNKEHWIV-TKIL--RGHLEDVYDISWSPTSTHLISGSVDN-------------------TAIMWDVHKGKNLG 228 (621)
Q Consensus 177 ------~~~~~~~~-~~~~--~~~~~~v~~i~~spd~~~l~s~~~dg-------------------~i~vwd~~~~~~~~ 228 (621)
.....|.. ...+ .+.......++++|++.+++.++.++ .|..+|..+|+.+.
T Consensus 218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W 297 (677)
T 1kb0_A 218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW 297 (677)
T ss_dssp SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEE
Confidence 00001100 0000 01222234678889888888887664 59999999999987
Q ss_pred Eecc--CC-------cceEEEEEcCCC---CEEEEEeCCCcEEEEEccCceeeeecccCCCCCC-----Cccccccccc-
Q psy15549 229 ILTE--HK-------KFVQGVAWDPKN---QYVATLSSDRSLRTYSIQSKKVISRACRSKLPVD-----SSHELFDKVV- 290 (621)
Q Consensus 229 ~~~~--~~-------~~v~~l~~sp~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~- 290 (621)
.+.. |. .....+....+| ..++.++.+|.|+++|..+++.+..+.....+.. .+........
T Consensus 298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~ 377 (677)
T 1kb0_A 298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAAR 377 (677)
T ss_dssp EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGG
T ss_pred EEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccC
Confidence 7643 21 112223333467 6788999999999999999999877653322110 0000000000
Q ss_pred ------cccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcc-cceeeeeccc
Q psy15549 291 ------PLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQ-YYSVAVKCCP 363 (621)
Q Consensus 291 ------~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 363 (621)
.++-.......-..++|+|++.++++.. .+.....+... .+.. ........... .......+..
T Consensus 378 ~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~-----~~~~~~~~~~~-~~~~---g~~~~~~~~~~~~~~~g~~~~~ 448 (677)
T 1kb0_A 378 DGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPA-----QNVPVNLMDDK-KWEF---NQAGPGKPQSGTGWNTAKFFNA 448 (677)
T ss_dssp CTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEE-----EECCCEEEECT-TCCT---TCCCTTSTTGGGTCCCCEEECS
T ss_pred cCCCccEECcCcccccCCCCceEcCCCCEEEEeC-----hhcceeeeccc-cccc---cccccccccccccccccccccc
Confidence 0000000001113688999988888765 22211111110 0000 00000000000 0000000000
Q ss_pred eeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecC
Q psy15549 364 VLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGD 443 (621)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~ 443 (621)
.+ .+ ....+.|..||+.+++.+-.+. +..++....++.++..++.++.||.+++||..+
T Consensus 449 -----~~--------~~------~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 449 -----EP--------PK------SKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp -----SC--------CC------SCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred -----cc--------CC------CCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence 00 00 0124789999999999887774 334555666777888899999999999999999
Q ss_pred CcCCcccCCCCCc-ccccCCCCCCCCcc
Q psy15549 444 NEIGIPYVPPSGE-ESKENDPTKGEPVR 470 (621)
Q Consensus 444 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 470 (621)
|+.+..+..+.+. ...+.+..+|+.++
T Consensus 508 G~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 508 GEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp CCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 9988877665432 22233346666444
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.03 E-value=4.1e-08 Score=105.24 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=47.1
Q ss_pred CCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEE-EEeC----------------CCcEEEEEec
Q psy15549 380 PYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLI-ASST----------------DGYCSIISFG 442 (621)
Q Consensus 380 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~-s~s~----------------dg~i~iw~~~ 442 (621)
.++.++.++.+|.+++||..+++.+..+..++.....-+.|..+|+.++ +.+. .+.+.+|.+.
T Consensus 487 ~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 4577888888999999999999999988765544445567778887544 3322 3677777776
Q ss_pred C
Q psy15549 443 D 443 (621)
Q Consensus 443 ~ 443 (621)
.
T Consensus 567 ~ 567 (677)
T 1kb0_A 567 G 567 (677)
T ss_dssp C
T ss_pred c
Confidence 4
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.02 E-value=1e-07 Score=102.30 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=38.9
Q ss_pred CCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCe-EEEE
Q psy15549 380 PYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKV-LIAS 430 (621)
Q Consensus 380 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~-l~s~ 430 (621)
.++.++.++.|+.|+.||..+|+.+..+..++.....-+.|..+|+. +++.
T Consensus 485 agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 485 AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 45788888999999999999999998886544444455777889874 4444
No 233
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.99 E-value=1.7e-08 Score=98.79 Aligned_cols=213 Identities=7% Similarity=-0.112 Sum_probs=122.0
Q ss_pred eEEeccccccccceeeccccccccCcEEEEEEccCCCEEEEEc-----------CCceEEEEeccCccccccceeccccc
Q psy15549 58 IWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-----------DVGKEIWYLTERESGIANVEFASDLS 126 (621)
Q Consensus 58 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-----------d~~v~iw~~~~~~~~~~~~~~~~~~~ 126 (621)
+.|..+.+... ++.....+ .+.++|||++++++. ++.|.+||..+. +....+.
T Consensus 50 vID~~t~~v~~-------~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~-------~vv~~I~ 113 (368)
T 1mda_H 50 VSCAGCGVTLG-------HSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF-------LPIADIE 113 (368)
T ss_dssp EEETTTTEEEE-------EEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC-------CEEEEEE
T ss_pred EEECCCCeEEE-------EEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC-------CEEEEEE
Confidence 66666554322 23333344 799999999888874 567999999887 3344443
Q ss_pred cc-------CCCeEEEEECCCCCEEEEEeC--CCcEEE--EEccCCCCCCCCCCCCc-cccccccc---------ceeee
Q psy15549 127 RH-------QKAVNVVRFSPNGELLASGDD--ESTIIV--WKQKTDQDLPEFPSSNL-DEENVNKE---------HWIVT 185 (621)
Q Consensus 127 ~h-------~~~V~~i~~sp~g~~l~s~s~--dg~i~v--wd~~~~~~~~~~~~~~~-~~~~~~~~---------~~~~~ 185 (621)
-+ ......++|+|||++|+++.. +..|.+ +|+.+ +..++.... ........ .+...
T Consensus 114 v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~v 190 (368)
T 1mda_H 114 LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAAS 190 (368)
T ss_dssp ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEE
T ss_pred CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEE
Confidence 22 123557999999999998864 457888 88866 222211100 00000000 00000
Q ss_pred e-----------------eecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCc--EEEEecc-------CC---cc
Q psy15549 186 K-----------------ILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGK--NLGILTE-------HK---KF 236 (621)
Q Consensus 186 ~-----------------~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~-------~~---~~ 236 (621)
. ...-...+. . ++++..++..+. +.|.+.|+.+.. .+..+.. +. ..
T Consensus 191 d~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 191 DLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp ECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred ECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 0 000011122 2 555566666666 899999986532 2222211 11 11
Q ss_pred eEEEEEcCCCCEEEEEeC-C--------CcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeee
Q psy15549 237 VQGVAWDPKNQYVATLSS-D--------RSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTF 307 (621)
Q Consensus 237 v~~l~~sp~~~~l~s~~~-d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 307 (621)
...++++|++++++++.. . +.+.++|+.+++.+..+... .....++|
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg------------------------~~p~gi~~ 321 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG------------------------HDSDAIIA 321 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE------------------------EEECEEEE
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC------------------------CCcceEEE
Confidence 222789999998887643 2 35669999999988776422 13478999
Q ss_pred cCCCCeEEecc
Q psy15549 308 SPDGQLLIAPS 318 (621)
Q Consensus 308 spdg~~l~~~s 318 (621)
+|||++++++.
T Consensus 322 s~Dg~~l~va~ 332 (368)
T 1mda_H 322 AQDGASDNYAN 332 (368)
T ss_dssp CCSSSCEEEEE
T ss_pred CCCCCEEEEEc
Confidence 99998665543
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=6e-11 Score=117.75 Aligned_cols=188 Identities=12% Similarity=0.034 Sum_probs=107.1
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy15549 140 NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMW 219 (621)
Q Consensus 140 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vw 219 (621)
++..+++++.||.|+.||..+++.+. . +.. ..+.+..+..++..+++++.||.|+.|
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W-----------------~----~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~ 64 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW-----------------T----LKE--DPVLQVPTHVEEPAFLPDPNDGSLYTL 64 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE-----------------E----EEC--CCSCCCC-----CCEEECTTTCCEEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE-----------------E----ecC--CCceecceEcCCCEEEEeCCCCEEEEE
Confidence 57789999999999999999998642 1 122 334444455677788888899999999
Q ss_pred ECCCCcEEEEeccCCcc-eE-EEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCC
Q psy15549 220 DVHKGKNLGILTEHKKF-VQ-GVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDT 297 (621)
Q Consensus 220 d~~~~~~~~~~~~~~~~-v~-~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (621)
|..+|+.+..+..+... +. +..+. .+..|++++.++.|+.||..+|+.+..+..+.
T Consensus 65 d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--------------------- 122 (369)
T 2hz6_A 65 GSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF--------------------- 122 (369)
T ss_dssp -----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------------------
T ss_pred ECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---------------------
Confidence 99999887666443211 11 11111 34567788889999999999988765442100
Q ss_pred cccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCc
Q psy15549 298 MKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLF 377 (621)
Q Consensus 298 ~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (621)
...++|
T Consensus 123 ------~~~~~p-------------------------------------------------------------------- 128 (369)
T 2hz6_A 123 ------ADSLSP-------------------------------------------------------------------- 128 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------cccccc--------------------------------------------------------------------
Confidence 011112
Q ss_pred cCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCC---CeEEEEeCCCcEEEEEecCCcCCcccC
Q psy15549 378 KLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDG---KVLIASSTDGYCSIISFGDNEIGIPYV 451 (621)
Q Consensus 378 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg---~~l~s~s~dg~i~iw~~~~~~~~~~~~ 451 (621)
.++.+++++.++.|+.||..+++.+..+.. + .....+++.++ ..+++++.||.|+.||..+|+..-...
T Consensus 129 --~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 129 --STSLLYLGRTEYTITMYDTKTRELRWNATY-F--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp ------EEEEEEEEEEECCCSSSSSCCCEEEE-E--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred --cCCEEEEEecCCEEEEEECCCCCEEEeEec-c--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 124566677788999999999987665532 1 12233444432 567788899999999999998765544
No 235
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.95 E-value=1.8e-06 Score=81.27 Aligned_cols=156 Identities=12% Similarity=0.054 Sum_probs=99.6
Q ss_pred CcEEEEEEccCCCEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEE-EeCCCcEEEEEc
Q psy15549 82 KAVNVVRFSPNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLAS-GDDESTIIVWKQ 158 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s-~s~dg~i~vwd~ 158 (621)
..+..++|++++..|..+. .+.|..++..... ....+.........+++++++..|+. -...+.|.++++
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~ 108 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM 108 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-------cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEc
Confidence 4578999999777666655 5678888876432 11111122246789999997655554 445678999998
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEECCCCcEEEEe-ccCC
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSV---DNTAIMWDVHKGKNLGIL-TEHK 234 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~---dg~i~vwd~~~~~~~~~~-~~~~ 234 (621)
+..... ............++++|++..|+.+.. .+.|..+++... ....+ ....
T Consensus 109 ~g~~~~---------------------~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~ 166 (267)
T 1npe_A 109 DGTQRR---------------------VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNL 166 (267)
T ss_dssp TSCSCE---------------------EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTC
T ss_pred CCCCEE---------------------EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCC
Confidence 654311 111122245789999997666665554 368888887543 22222 2233
Q ss_pred cceEEEEEcCCCCEEEEEeC-CCcEEEEEccCc
Q psy15549 235 KFVQGVAWDPKNQYVATLSS-DRSLRTYSIQSK 266 (621)
Q Consensus 235 ~~v~~l~~sp~~~~l~s~~~-dg~i~iwd~~~~ 266 (621)
.....++++|++..|+.+.. .+.|.++|+...
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~ 199 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP 199 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence 45789999998877766554 578999998653
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.92 E-value=5.6e-10 Score=110.75 Aligned_cols=147 Identities=12% Similarity=0.118 Sum_probs=74.2
Q ss_pred CCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCC
Q psy15549 92 NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSS 170 (621)
Q Consensus 92 dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 170 (621)
++..|++++ ++.+..||..++ +....+.. +.+.+..+..++..+++++.||.|+.||..+++.+..+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG-------~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG-------SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC-------CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred eCCEEEEEcCCCEEEEEECCCC-------CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence 456666666 888999998877 33333333 34545555667778888889999999999888764222100
Q ss_pred CcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEE
Q psy15549 171 NLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVA 250 (621)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 250 (621)
. .... ...++ +. ++..+++++.++.|+.||..+|+.+..+..+. ...++|++..++
T Consensus 79 ~--------------~~~~-~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~ 134 (369)
T 2hz6_A 79 I--------------PELV-QASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLY 134 (369)
T ss_dssp H--------------HHHH-TTCSC----C------CCCCEEEEEEEEECCC--------------------------EE
T ss_pred C--------------cccc-ccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEE
Confidence 0 0000 01111 11 34467788889999999999999887776543 234567888999
Q ss_pred EEeCCCcEEEEEccCceeeee
Q psy15549 251 TLSSDRSLRTYSIQSKKVISR 271 (621)
Q Consensus 251 s~~~dg~i~iwd~~~~~~~~~ 271 (621)
+++.|+.|+.||..+++.+..
T Consensus 135 ~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 135 LGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp EEEEEEEEECCCSSSSSCCCE
T ss_pred EEecCCEEEEEECCCCCEEEe
Confidence 999999999999998876543
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.89 E-value=1.4e-07 Score=94.05 Aligned_cols=240 Identities=7% Similarity=-0.028 Sum_probs=134.4
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy15549 140 NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMW 219 (621)
Q Consensus 140 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vw 219 (621)
++..++.++.++.|..+|..+++.+..+ ............ .+..+++++.++.|..+
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~---------------------~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~ 158 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQT---------------------KVAGEALSRPVV--SDGLVLIHTSNGQLQAL 158 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEE---------------------ECSSCCCSCCEE--ETTEEEEECTTSEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEE---------------------eCCCceEcCCEE--ECCEEEEEcCCCeEEEE
Confidence 4567888888999999999988754111 111110111111 24478888889999999
Q ss_pred ECCCCcEEEEeccCCcce-----EEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccc
Q psy15549 220 DVHKGKNLGILTEHKKFV-----QGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFH 294 (621)
Q Consensus 220 d~~~~~~~~~~~~~~~~v-----~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (621)
|..+|+.+.......... ...... +..+++++.++.|..+|..+++.+..............
T Consensus 159 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~----------- 225 (376)
T 3q7m_A 159 NEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEI----------- 225 (376)
T ss_dssp ETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC------------------
T ss_pred ECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccc-----------
Confidence 999999887765432211 122222 45677788899999999999988766542211000000
Q ss_pred cCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCC
Q psy15549 295 DDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDK 374 (621)
Q Consensus 295 ~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (621)
...........+ .+..+++++ .++.+..++.......- ...... ... +
T Consensus 226 -~~~~~~~~~p~~--~~~~v~~~~-----~~g~l~~~d~~tG~~~w-------~~~~~~--~~~----~----------- 273 (376)
T 3q7m_A 226 -DRLSDVDTTPVV--VNGVVFALA-----YNGNLTALDLRSGQIMW-------KRELGS--VND----F----------- 273 (376)
T ss_dssp -----CCCCCCEE--ETTEEEEEC-----TTSCEEEEETTTCCEEE-------EECCCC--EEE----E-----------
T ss_pred -ccccccCCCcEE--ECCEEEEEe-----cCcEEEEEECCCCcEEe-------eccCCC--CCC----c-----------
Confidence 000000000111 123444444 34444444432110000 000000 000 1
Q ss_pred CCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCC
Q psy15549 375 PLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVP 452 (621)
Q Consensus 375 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 452 (621)
...++.+++++.++.|+.+|..+++.+..........+..... .+..|+.++.+|.|.++|..++++......
T Consensus 274 ---~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 274 ---IVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp ---EEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ---eEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 0134778888899999999999999877664222223333333 256788898999999999999987665544
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.89 E-value=3.2e-08 Score=100.68 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=70.9
Q ss_pred CCCEEEEEeC-CCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeec-CCCCCeEEEEE-C-CCCCEEEEEe----
Q psy15549 140 NGELLASGDD-ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILR-GHLEDVYDISW-S-PTSTHLISGS---- 211 (621)
Q Consensus 140 ~g~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~-s-pd~~~l~s~~---- 211 (621)
||++|+.+.. ++.|.+.|+.+.+.. ..+. .....+..+++ + |+++++++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~---------------------~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~ 158 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCD---------------------AILEIPNAKGIHGLRPQKWPRSNYVFCNGEDET 158 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEE---------------------EEEECSSCCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEe---------------------eEEeCCCCCCCcceeeeecCCCcEEEEeccccc
Confidence 7888877665 457999999998754 2111 23345788888 5 8999998885
Q ss_pred --------------CCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCC
Q psy15549 212 --------------VDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDR 256 (621)
Q Consensus 212 --------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg 256 (621)
.++.+.++|..+.+.+.++.-.. ....++++|+|+++++.+.+.
T Consensus 159 p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~s 216 (595)
T 1fwx_A 159 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNS 216 (595)
T ss_dssp ESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCT
T ss_pred ccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCc
Confidence 24679999999998888875333 456788999999999888653
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.87 E-value=2.8e-06 Score=93.56 Aligned_cols=335 Identities=10% Similarity=0.061 Sum_probs=188.0
Q ss_pred CCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCC
Q psy15549 14 DPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNG 93 (621)
Q Consensus 14 ~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 93 (621)
..|.+|...++|. |..|+.+| +. .||..+..-... . .........|.++...++|
T Consensus 88 n~I~~i~~d~~g~------lWigT~~G-l~--------------~yd~~~~~f~~~--~--~~~~~~~~~i~~i~~d~~g 142 (795)
T 4a2l_A 88 DISRIVKTDSQGR------VWIGTRDG-LS--------------RYDEEKDIFQNF--F--YEKNGKHLQVNGIEEISPE 142 (795)
T ss_dssp SCEEEEEECTTSC------EEEEESSC-EE--------------EEETTTTEEEEE--C--CEETTEECCCCEEEEEETT
T ss_pred cceeEEEECCCCC------EEEEeCCc-hh--------------eeCCCCCeEEec--c--ccccCCCceEEEEEECCCC
Confidence 4699999999984 55566666 45 566543321100 0 0000000128889888888
Q ss_pred CEEEEEcCCceEEEEeccCccccccceeccccccc-CCC-eEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCC
Q psy15549 94 ELLASGDDVGKEIWYLTERESGIANVEFASDLSRH-QKA-VNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSN 171 (621)
Q Consensus 94 ~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h-~~~-V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 171 (621)
.+.+... +++.+|+...+ ........+ ... |.++...+++.+.+ ++.++.|..|+..+++....
T Consensus 143 ~lwi~t~-~gl~~~~~~~~-------~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~----- 208 (795)
T 4a2l_A 143 QLLISTP-EGLIMFDIKES-------KFIDDSFSTAMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKV----- 208 (795)
T ss_dssp EEEEEET-TEEEEEETTTT-------EEECSSSCHHHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCCEEEC-----
T ss_pred CEEEEEC-CceEEEECCCC-------EEEeccCCCCCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEe-----
Confidence 8776554 77888886554 111111111 123 88888887776554 55554588898776542100
Q ss_pred cccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEecc-------CCcceEEEEEcC
Q psy15549 172 LDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTE-------HKKFVQGVAWDP 244 (621)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~l~~sp 244 (621)
....+...|.++...+++.+.+ |+.++-|.+||..+++....... ....|.++...+
T Consensus 209 ---------------~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~ 272 (795)
T 4a2l_A 209 ---------------IPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS 272 (795)
T ss_dssp ---------------C----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT
T ss_pred ---------------cCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC
Confidence 0012345688888887776444 55444589999877654433221 135699999998
Q ss_pred CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCC
Q psy15549 245 KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENS 324 (621)
Q Consensus 245 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~ 324 (621)
+|.+.+ |+.+ -|.+||..++...........+ .......|.++...++|...+...
T Consensus 273 ~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~i~~i~~D~~g~lWigt~------ 328 (795)
T 4a2l_A 273 QNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVEN----------------GSLSQRSVRSIFMDSQGGMWLGTY------ 328 (795)
T ss_dssp TSCEEE-EESS-CEEEEETTTTEEEEECCCTTST----------------TSCSSSCEEEEEECTTSCEEEEES------
T ss_pred CCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCC----------------CCCCCCcEEEEEEeCCcCEEEEEC------
Confidence 888655 5555 5889998776543322110000 011234578999999998666443
Q ss_pred CCCCcceeeeee-eeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCce
Q psy15549 325 DSTRKPISVTHV-FTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASP 403 (621)
Q Consensus 325 d~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 403 (621)
++.+..++.... +...........+ ....+.++... .++.+.+|+.++-|..||..++..
T Consensus 329 ~~Gl~~~~~~~~~~~~~~~~~~~~~l--~~~~V~~i~~d-----------------~~g~lWiGt~~~Gl~~~~~~~~~~ 389 (795)
T 4a2l_A 329 FGGLNYYHPIRNRFKNIRNIPYKNSL--SDNVVSCIVED-----------------KDKNLWIGTNDGGLNLYNPITQRF 389 (795)
T ss_dssp SSCEEEECGGGGSSEEECCCTTSSSC--SCSSEEEEEEC-----------------TTSCEEEEESSSCEEEECTTTCCE
T ss_pred CCCeEEeCCCcccceEEcCCCCCCCC--CCCeeEEEEEC-----------------CCCCEEEEECCCCeEEEcCCCCcE
Confidence 333444432110 0000000000000 11122222221 235577788888899999887754
Q ss_pred eEEEec-------ccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcC
Q psy15549 404 FAFIAN-------IHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEI 446 (621)
Q Consensus 404 ~~~~~~-------~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~ 446 (621)
...... .....|.+++..++|+.|..|+.++-|.+|+..+++.
T Consensus 390 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 390 TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 333211 1235799999999998566677777799999887654
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.87 E-value=1.5e-06 Score=81.70 Aligned_cols=150 Identities=12% Similarity=0.009 Sum_probs=90.5
Q ss_pred CCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCCC
Q psy15549 93 GELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASG-DDESTIIVWKQKTDQDLPEFPSSN 171 (621)
Q Consensus 93 g~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~ 171 (621)
|.+|+.+..+.|+.+++........ .....+......+..++|++++..|+.+ ...+.|.++++......
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~--~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~------- 71 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKT--EAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT------- 71 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGG--GCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-------
T ss_pred CcEEEEEcCCeEEEEEecCcccccc--cceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-------
Confidence 4566666666777787765421100 0001111122457789999976655544 45789999998765421
Q ss_pred cccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEE
Q psy15549 172 LDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS-VDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVA 250 (621)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 250 (621)
............+++++++..|+.+. ..+.|.++++..................++++|++..|+
T Consensus 72 --------------~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~ly 137 (267)
T 1npe_A 72 --------------TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLY 137 (267)
T ss_dssp --------------EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEE
T ss_pred --------------EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEE
Confidence 11222235678999999766555554 467999999864433222222224568999999777666
Q ss_pred EEeC---CCcEEEEEccC
Q psy15549 251 TLSS---DRSLRTYSIQS 265 (621)
Q Consensus 251 s~~~---dg~i~iwd~~~ 265 (621)
.+.. .+.|..+++..
T Consensus 138 v~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 138 WTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp EEECCSSSCEEEEEETTS
T ss_pred EEECCCCCcEEEEEecCC
Confidence 5554 36788887753
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.83 E-value=5.5e-08 Score=94.89 Aligned_cols=270 Identities=10% Similarity=0.004 Sum_probs=151.8
Q ss_pred EEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCC
Q psy15549 86 VVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLP 165 (621)
Q Consensus 86 ~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~ 165 (621)
++.+..+|.+.+...++++..|+ ..+ ........+...+.++...+++. |..++.+ |..+|. +++...
T Consensus 24 ~~~~d~~g~l~v~t~~~~l~~~d-~~g-------~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~ 91 (330)
T 3hxj_A 24 SPILAKNGTIYLGSSNKNLYAIN-TDG-------SVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKW 91 (330)
T ss_dssp CCEECTTSCEECSSTTTTTEEEC-TTS-------CEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGG
T ss_pred CceEccCCeEEEEcCCCEEEEEC-CCC-------cEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEE
Confidence 34455677665555588899999 655 22333333344556777777765 4455544 888885 444332
Q ss_pred CCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCC
Q psy15549 166 EFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPK 245 (621)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~ 245 (621)
.+ ...........+. +..|..++.++.|..+|.. ++.......+...+.++...++
T Consensus 92 ~~---------------------~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~ 147 (330)
T 3hxj_A 92 RF---------------------DTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSED 147 (330)
T ss_dssp GS---------------------CC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTT
T ss_pred EE---------------------ECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCC
Confidence 21 1111111122222 4567788889999999988 7777666655556677777777
Q ss_pred CCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCC
Q psy15549 246 NQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSD 325 (621)
Q Consensus 246 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d 325 (621)
+. |+.++.++.|..||.. ++.+..+... ...+.++.+.+++..++.. +
T Consensus 148 g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~-----------------------~~~~~~~~~d~~g~l~v~t-~------ 195 (330)
T 3hxj_A 148 GT-IYVGSNDNYLYAINPD-GTEKWRFKTN-----------------------DAITSAASIGKDGTIYFGS-D------ 195 (330)
T ss_dssp SC-EEEECTTSEEEEECTT-SCEEEEEECS-----------------------SCCCSCCEECTTCCEEEES-S------
T ss_pred CE-EEEEcCCCEEEEECCC-CCEeEEEecC-----------------------CCceeeeEEcCCCEEEEEe-C------
Confidence 77 5557788999999988 7665544311 1123566777777766543 2
Q ss_pred CCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeE
Q psy15549 326 STRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFA 405 (621)
Q Consensus 326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 405 (621)
.+..++.. . ............+. .+....++.+.+++.++.|..+|. +++.+.
T Consensus 196 -~l~~~d~~-g-------~~~~~~~~~~~~~~-----------------~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~ 248 (330)
T 3hxj_A 196 -KVYAINPD-G-------TEKWNFYAGYWTVT-----------------RPAISEDGTIYVTSLDGHLYAINP-DGTEKW 248 (330)
T ss_dssp -SEEEECTT-S-------CEEEEECCSSCCCS-----------------CCEECTTSCEEEEETTTEEEEECT-TSCEEE
T ss_pred -EEEEECCC-C-------cEEEEEccCCccee-----------------ceEECCCCeEEEEcCCCeEEEECC-CCCEeE
Confidence 22222200 0 00000000000011 111123346777888889999974 555555
Q ss_pred EEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCC
Q psy15549 406 FIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPP 453 (621)
Q Consensus 406 ~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 453 (621)
.+.. ....+..+.+.++| .|..++.+|.|..++. +++....+...
T Consensus 249 ~~~~-~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~ 293 (330)
T 3hxj_A 249 RFKT-GKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG 293 (330)
T ss_dssp EEEC-SSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS
T ss_pred EeeC-CCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC
Confidence 5432 33344556666666 4667778888999985 56655444433
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.81 E-value=1.2e-06 Score=80.85 Aligned_cols=201 Identities=12% Similarity=0.069 Sum_probs=129.6
Q ss_pred CeEEEEECCCCCEEEEEeC--CCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q psy15549 131 AVNVVRFSPNGELLASGDD--ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLI 208 (621)
Q Consensus 131 ~V~~i~~sp~g~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~ 208 (621)
....+.|++++.++++.+. ++.|+++|+.+++.+..+ .+ +.......+++. +..|+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i-------------------~l-~~~~fgeGi~~~--g~~ly 79 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH-------------------KM-DDSYFGEGLTLL--NEKLY 79 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE-------------------EC-CTTCCEEEEEEE--TTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE-------------------ec-CCCcceEEEEEe--CCEEE
Confidence 3578999998755555443 579999999999864322 11 111222345554 44555
Q ss_pred EEe-CCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCcccccc
Q psy15549 209 SGS-VDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFD 287 (621)
Q Consensus 209 s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (621)
.+. .++.+.++|..+++.+.++...... ...+++||+.|+++..++.|.++|..+.+.+..+.....+
T Consensus 80 v~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~--------- 148 (266)
T 2iwa_A 80 QVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG--------- 148 (266)
T ss_dssp EEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT---------
T ss_pred EEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC---------
Confidence 444 5789999999999999888533111 2345667887777777889999999998877665321100
Q ss_pred ccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeee
Q psy15549 288 KVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFE 367 (621)
Q Consensus 288 ~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (621)
..-..+..+.|. +|. +++
T Consensus 149 ---------~p~~~~nele~~-dg~-lyv--------------------------------------------------- 166 (266)
T 2iwa_A 149 ---------HRVIRLNELEYI-NGE-VWA--------------------------------------------------- 166 (266)
T ss_dssp ---------EECCCEEEEEEE-TTE-EEE---------------------------------------------------
T ss_pred ---------cccccceeEEEE-CCE-EEE---------------------------------------------------
Confidence 000012334444 332 221
Q ss_pred cCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEecc-c-----------ccceEEEEEcCCCCe-EEEEeCCC
Q psy15549 368 LKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANI-H-----------YTKLTDITWSSDGKV-LIASSTDG 434 (621)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-h-----------~~~v~~~~~spdg~~-l~s~s~dg 434 (621)
....++.|.+.|..+++.+..+..+ . ......|+|+|+++. ++++...+
T Consensus 167 ------------------n~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 167 ------------------NIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp ------------------EETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred ------------------ecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence 1124578999999999988888532 1 135689999999874 55666788
Q ss_pred cEEEEEecCC
Q psy15549 435 YCSIISFGDN 444 (621)
Q Consensus 435 ~i~iw~~~~~ 444 (621)
.|+..++...
T Consensus 229 ~v~~i~l~~~ 238 (266)
T 2iwa_A 229 KLFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEEecc
Confidence 9999998864
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.78 E-value=7.2e-05 Score=82.28 Aligned_cols=343 Identities=8% Similarity=0.016 Sum_probs=190.5
Q ss_pred CCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCC
Q psy15549 14 DPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNG 93 (621)
Q Consensus 14 ~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 93 (621)
..|.++...++|. |..|+.+| |. +|+..++..............-....|.++...++|
T Consensus 263 ~~i~~i~~d~~g~------lWigt~~G-l~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g 321 (795)
T 4a2l_A 263 NYIRSLAMDSQNR------LWIGTFND-LN--------------IYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG 321 (795)
T ss_dssp SBEEEEEECTTSC------EEEEESSC-EE--------------EEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS
T ss_pred CeEEEEEEcCCCC------EEEEeCCh-hh--------------eEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc
Confidence 4689999988884 44455555 55 555433221100000000011124679999999999
Q ss_pred CEEEEEcCCceEEEEeccCccccccceecccc----cccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q psy15549 94 ELLASGDDVGKEIWYLTERESGIANVEFASDL----SRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPS 169 (621)
Q Consensus 94 ~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~----~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 169 (621)
.+-+...++++.+|+.....- ...... .-....|.++...++|.+ ..|+.++-|..|+..++....-...
T Consensus 322 ~lWigt~~~Gl~~~~~~~~~~-----~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~ 395 (795)
T 4a2l_A 322 GMWLGTYFGGLNYYHPIRNRF-----KNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQ 395 (795)
T ss_dssp CEEEEESSSCEEEECGGGGSS-----EEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC
T ss_pred CEEEEECCCCeEEeCCCcccc-----eEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecC
Confidence 987766688999998654321 111110 012356999999888864 4567776799998776542100000
Q ss_pred CCcccccccccceeeeeee-cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEec----cCCcceEEEEEcC
Q psy15549 170 SNLDEENVNKEHWIVTKIL-RGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILT----EHKKFVQGVAWDP 244 (621)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~l~~sp 244 (621)
. .... .-....|.++...++++.|..|+.++-|.+||..+++...... .....|.++...+
T Consensus 396 ~--------------~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~ 461 (795)
T 4a2l_A 396 E--------------DESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG 461 (795)
T ss_dssp --------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS
T ss_pred C--------------CCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC
Confidence 0 0000 0123569999998888757778877789999998876543321 1345789999988
Q ss_pred CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCC
Q psy15549 245 KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENS 324 (621)
Q Consensus 245 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~ 324 (621)
+|.+.+ |+.+ -|.+||..+++....... ..+ .......|.++...++|...+...
T Consensus 462 ~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~-~~~----------------~~~~~~~i~~i~~d~~g~lWigt~------ 516 (795)
T 4a2l_A 462 EGNLWL-GTLS-ALVRFNPEQRSFTTIEKE-KDG----------------TPVVSKQITTLFRDSHKRLWIGGE------ 516 (795)
T ss_dssp SSCEEE-EESS-CEEEEETTTTEEEECCBC-TTC----------------CBCCCCCEEEEEECTTCCEEEEES------
T ss_pred CCCEEE-EecC-ceeEEeCCCCeEEEcccc-ccc----------------cccCCceEEEEEECCCCCEEEEeC------
Confidence 888655 4454 488899877654332110 000 001124578889999998666543
Q ss_pred CCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCcee
Q psy15549 325 DSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPF 404 (621)
Q Consensus 325 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 404 (621)
+.+..++...... . ..............+.++... .++.+..++.. .|..||..+++..
T Consensus 517 -~Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d-----------------~~g~lWigT~~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 517 -EGLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIYEA-----------------SNGIIWVGTRE-GFYCFNEKDKQIK 575 (795)
T ss_dssp -SCEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEEEC-----------------TTSCEEEEESS-CEEEEETTTTEEE
T ss_pred -CceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEEEC-----------------CCCCEEEEeCC-CceeECCCCCcEE
Confidence 2344444321100 0 000000000011122222222 22445555554 6888998776433
Q ss_pred EEEecc---cccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcC
Q psy15549 405 AFIANI---HYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEI 446 (621)
Q Consensus 405 ~~~~~~---h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~ 446 (621)
. +... ....|.++...++|.+.+++ . +-|..|+..++.+
T Consensus 576 ~-~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~ 617 (795)
T 4a2l_A 576 R-YNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKF 617 (795)
T ss_dssp E-ECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEE
T ss_pred E-eCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcE
Confidence 2 2221 23468999999999866655 3 4577788776543
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.67 E-value=2.2e-05 Score=83.97 Aligned_cols=52 Identities=8% Similarity=0.096 Sum_probs=35.8
Q ss_pred CCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCC-eEEEEe
Q psy15549 380 PYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGK-VLIASS 431 (621)
Q Consensus 380 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~s 431 (621)
.++.+++++.|+.++.||..+++.+..+..+..-.-.-+.+..+|+ +++.++
T Consensus 468 ~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 4578888889999999999999999887543221112344456777 555554
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.65 E-value=1.2e-06 Score=93.82 Aligned_cols=363 Identities=12% Similarity=0.071 Sum_probs=180.4
Q ss_pred EEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccc-cCcE-EEEEEccCCCEEEEEc-CCceEEEE
Q psy15549 32 RIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRH-QKAV-NVVRFSPNGELLASGD-DVGKEIWY 108 (621)
Q Consensus 32 ~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h-~~~V-~~l~~spdg~~las~~-d~~v~iw~ 108 (621)
.|++++.++.|.-+|..+.+. +|.......... .... ...+ ..+++ .+..|+.++ ++.+..+|
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~-----~W~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD 133 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKE-----LWRYDPEVAKVK-------ARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALD 133 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCE-----EEEECCCCCGGG-------GGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEE
T ss_pred EEEEECCCCeEEEEECCCChh-----ceEECCCCCccc-------cccccccCCccceEE--ECCEEEEEcCCCEEEEEE
Confidence 677777788888777766655 777654322111 0000 0000 11112 133444444 77777777
Q ss_pred eccCccccccceeccccccc----CCCeEE-EEECCCCCEEEEEeC------CCcEEEEEccCCCCCCCCCCCC--cccc
Q psy15549 109 LTERESGIANVEFASDLSRH----QKAVNV-VRFSPNGELLASGDD------ESTIIVWKQKTDQDLPEFPSSN--LDEE 175 (621)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~h----~~~V~~-i~~sp~g~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~--~~~~ 175 (621)
..++. .+...... ...+.+ ... .++ .++.+.. +|.|..+|..+++.+-.+.... ....
T Consensus 134 ~~tG~-------~~W~~~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~ 204 (668)
T 1kv9_A 134 AKTGK-------AIWSQQTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALP 204 (668)
T ss_dssp TTTCC-------EEEEEECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC
T ss_pred CCCCC-------EeeeeccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcc
Confidence 76653 11111110 000100 011 133 4555432 5899999999998764432100 0000
Q ss_pred c------ccccceeeee--eecCCCCCeEEEEECCCCCEEEEEeCCC-------------------eEEEEECCCCcEEE
Q psy15549 176 N------VNKEHWIVTK--ILRGHLEDVYDISWSPTSTHLISGSVDN-------------------TAIMWDVHKGKNLG 228 (621)
Q Consensus 176 ~------~~~~~~~~~~--~~~~~~~~v~~i~~spd~~~l~s~~~dg-------------------~i~vwd~~~~~~~~ 228 (621)
. .....|.-.. ...++......+++.|+..+++.++.++ .|..+|..+|+.+.
T Consensus 205 ~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W 284 (668)
T 1kv9_A 205 YEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAW 284 (668)
T ss_dssp CSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred ccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceee
Confidence 0 0000000000 0001222233578888888888887765 49999999999987
Q ss_pred Eecc--CC-------cceEEEEEcCCCC---EEEEEeCCCcEEEEEccCceeeeecccCCCCC------CCccccccccc
Q psy15549 229 ILTE--HK-------KFVQGVAWDPKNQ---YVATLSSDRSLRTYSIQSKKVISRACRSKLPV------DSSHELFDKVV 290 (621)
Q Consensus 229 ~~~~--~~-------~~v~~l~~sp~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 290 (621)
.+.. |. .+.....+..+|+ .++.++.+|.+.++|..+|+.+........+- ...........
T Consensus 285 ~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~ 364 (668)
T 1kv9_A 285 HYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGV 364 (668)
T ss_dssp EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTT
T ss_pred EeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccc
Confidence 7753 22 2222223334665 68889999999999999999886544322110 00000000000
Q ss_pred c-------ccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccc
Q psy15549 291 P-------LFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCP 363 (621)
Q Consensus 291 ~-------~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (621)
. .+........-..++++|+...+++... +..... ... ... ..+ . ... .+...
T Consensus 365 ~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~-----~~~~~~-~~~----~~~-~~~-----~-~~~--~~g~~- 424 (668)
T 1kv9_A 365 RYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQ-----EVPGVY-RNE----GKD-FVT-----R-KAF--NTAAG- 424 (668)
T ss_dssp TCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEE-----ECCEEE-CCC----GGG-CCC-----C-SSC--CCSSC-
T ss_pred cccCCeeEECCCCccccCCCcceECCCCCEEEEecc-----ccceEe-eee----ccc-ccc-----c-ccc--ccCcc-
Confidence 0 0000000001134678888777766441 100000 000 000 000 0 000 00000
Q ss_pred eeeecCCCCCCCCccCCCcEEE-EEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEec
Q psy15549 364 VLFELKPSDDKPLFKLPYRIVI-AVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFG 442 (621)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~ 442 (621)
......+ ....+|.|+-||+.+++.+-.... ...+....+...|.++++++.||.|++||..
T Consensus 425 ---------------~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~ 487 (668)
T 1kv9_A 425 ---------------FADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSAD 487 (668)
T ss_dssp ---------------GGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred ---------------ccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence 0000001 112458899999999998777643 2334444455578889999999999999999
Q ss_pred CCcCCcccCCCC
Q psy15549 443 DNEIGIPYVPPS 454 (621)
Q Consensus 443 ~~~~~~~~~~~~ 454 (621)
+|+.+..+..+.
T Consensus 488 tG~~l~~~~~~~ 499 (668)
T 1kv9_A 488 KGEALWQFEAQS 499 (668)
T ss_dssp TCCEEEEEECSS
T ss_pred cChhheEecCCC
Confidence 999887776654
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.64 E-value=1.6e-06 Score=78.78 Aligned_cols=114 Identities=12% Similarity=0.151 Sum_probs=78.5
Q ss_pred eEEEEECCCCCEEEEEeCCC--cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCe--EEEEECCCCCEE
Q psy15549 132 VNVVRFSPNGELLASGDDES--TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDV--YDISWSPTSTHL 207 (621)
Q Consensus 132 V~~i~~sp~g~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~spd~~~l 207 (621)
...+.|+ ++.++.+.+.+| .|+++|+.+++.+.. ..-. ... ..+++ ++..|
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~---------------------~~l~-~~~FgeGit~--~g~~l 99 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ---------------------IELG-KRYFGEGISD--WKDKI 99 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE---------------------EECC-TTCCEEEEEE--ETTEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE---------------------EecC-CccceeEEEE--eCCEE
Confidence 4788898 677777777766 899999999986422 2211 222 23444 34455
Q ss_pred EEEe-CCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecc
Q psy15549 208 ISGS-VDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRAC 273 (621)
Q Consensus 208 ~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 273 (621)
.... .++.+.+||..+.+.+.++..... -..+ .++++.|+....++.|.++|..+.+.+..+.
T Consensus 100 y~ltw~~~~v~v~D~~t~~~~~ti~~~~e-G~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~ 163 (262)
T 3nol_A 100 VGLTWKNGLGFVWNIRNLRQVRSFNYDGE-GWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTIT 163 (262)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECSSC-CCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEE
T ss_pred EEEEeeCCEEEEEECccCcEEEEEECCCC-ceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEE
Confidence 5544 588999999999999998864332 2233 4567777766667889999999988776653
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.63 E-value=1.8e-06 Score=79.54 Aligned_cols=198 Identities=12% Similarity=0.039 Sum_probs=121.9
Q ss_pred eEEEeccccccCCcceEEEEec--CCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCC
Q psy15549 16 VLSVDIQLKQEKDNCYRIVTGG--ADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNG 93 (621)
Q Consensus 16 v~~l~~spd~~~~~~~~l~tg~--~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 93 (621)
...++|+||+. ++++.+ .++.|+ +.|+.+++.... + .+..+. ....+++. +
T Consensus 23 ~~Gl~~~~dg~-----Lyvstg~~~~s~v~--------------~iD~~tg~v~~~-i----~l~~~~-fgeGi~~~--g 75 (266)
T 2iwa_A 23 TQGLVYAENDT-----LFESTGLYGRSSVR--------------QVALQTGKVENI-H----KMDDSY-FGEGLTLL--N 75 (266)
T ss_dssp EEEEEECSTTE-----EEEEECSTTTCEEE--------------EEETTTCCEEEE-E----ECCTTC-CEEEEEEE--T
T ss_pred cccEEEeCCCe-----EEEECCCCCCCEEE--------------EEECCCCCEEEE-E----ecCCCc-ceEEEEEe--C
Confidence 57999999875 555443 367899 666655543221 0 011111 11234444 5
Q ss_pred CEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCC
Q psy15549 94 ELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSN 171 (621)
Q Consensus 94 ~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 171 (621)
..|..+. ++.+.++|..+. +.+..+...... ...+++||+.|+++..++.|.++|..+.+....++.
T Consensus 76 ~~lyv~t~~~~~v~viD~~t~-------~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V-- 144 (266)
T 2iwa_A 76 EKLYQVVWLKNIGFIYDRRTL-------SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNV-- 144 (266)
T ss_dssp TEEEEEETTCSEEEEEETTTT-------EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEEC--
T ss_pred CEEEEEEecCCEEEEEECCCC-------cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEE--
Confidence 5666555 778899998765 444444322111 133555788777777788999999988775432210
Q ss_pred cccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC-------------CcceE
Q psy15549 172 LDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEH-------------KKFVQ 238 (621)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~ 238 (621)
..-...-..++.+.|. ++...+....++.|.+.|..+++.+..+... .....
T Consensus 145 --------------g~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~n 209 (266)
T 2iwa_A 145 --------------KYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLN 209 (266)
T ss_dssp --------------EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEE
T ss_pred --------------CCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceE
Confidence 0000111246778888 7755555556789999999999998887532 12457
Q ss_pred EEEEcCCCCEEEE-EeCCCcEEEEEccCc
Q psy15549 239 GVAWDPKNQYVAT-LSSDRSLRTYSIQSK 266 (621)
Q Consensus 239 ~l~~sp~~~~l~s-~~~dg~i~iwd~~~~ 266 (621)
.++|+|+++.|++ +...+.|...++...
T Consensus 210 GIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 210 GIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999876554 546788888887653
No 248
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.60 E-value=5e-06 Score=75.58 Aligned_cols=117 Identities=9% Similarity=-0.050 Sum_probs=81.2
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q psy15549 131 AVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISG 210 (621)
Q Consensus 131 ~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~ 210 (621)
....+.|+ ++.++++.+.+|.|+++|+.+++.+.. .+.. ...-..+++.. +++.+..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~--------------------~l~~-~~FgeGit~~g-~~Ly~lt 112 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWM--------------------ERLG-NIFAEGLASDG-ERLYQLT 112 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEE--------------------EECT-TCCEEEEEECS-SCEEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeE--------------------ECCC-CcceeEEEEeC-CEEEEEE
Confidence 34688887 456777888889999999999986521 1221 11123355543 2344445
Q ss_pred eCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecc
Q psy15549 211 SVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRAC 273 (621)
Q Consensus 211 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 273 (621)
-.++.+.+||..+++.+.++.... .-..++ ++++.|+.+..++.|.++|..+.+.+..+.
T Consensus 113 w~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~ 172 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQ 172 (268)
T ss_dssp SSSCEEEEEETTTTEEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred ccCCEEEEEECCcCcEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence 568999999999999999886432 223444 568888877778899999999988777654
No 249
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=0.00048 Score=75.53 Aligned_cols=299 Identities=8% Similarity=-0.019 Sum_probs=161.3
Q ss_pred CcEEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccc-----cccCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q psy15549 82 KAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDL-----SRHQKAVNVVRFSPNGELLASGDDESTIIVW 156 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~-----~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vw 156 (621)
..|.++...++|.+.+.... ++.+|+...... ...... .-....|.++...++|. |..|+..+-|.++
T Consensus 211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~-----~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~ 283 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTETF-----TNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMIL 283 (781)
T ss_dssp SSEEEEEECTTCCEEEEETT-EEEEEETTTTEE-----EC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEE
T ss_pred CceeEEEEcCCCCEEEEeCC-cHheECCCCCcE-----EEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEE
Confidence 56999999999887776555 898998765421 111100 11235699999888876 4455554558889
Q ss_pred EccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----
Q psy15549 157 KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILT----- 231 (621)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~----- 231 (621)
+..+....... ...+..... ......-....|.++...++|. |-.|+.++-|..|+..+........
T Consensus 284 ~~~~~~~~~~~-~~~f~~~~~------~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 355 (781)
T 3v9f_A 284 DLQQNQFLLPE-QIRFEFIRE------GDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQM 355 (781)
T ss_dssp ETTCC----------CEEECB------CSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CC
T ss_pred CCCCCeeeeee-ccccccccC------CCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccc
Confidence 88765432100 000000000 0000012346799999998886 5567767778899887654322210
Q ss_pred ----cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeee
Q psy15549 232 ----EHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTF 307 (621)
Q Consensus 232 ----~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 307 (621)
.....|.++...++|.+. .|+.++-|..|+..++.... +.. . .......|.++..
T Consensus 356 ~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~-~~~-~------------------~~~~~~~v~~i~~ 414 (781)
T 3v9f_A 356 NESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIY-NKE-N------------------RELLSNSVLCSLK 414 (781)
T ss_dssp CSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEEC-C------------------------CCCSBEEEEEE
T ss_pred ccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEE-ccC-C------------------CCCCCcceEEEEE
Confidence 123568999988887754 56666668899986654321 110 0 0011245788888
Q ss_pred cCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEE
Q psy15549 308 SPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAV 387 (621)
Q Consensus 308 spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (621)
.++|.+.+... ++.+..++........ .... ......+.++... .++.+.++
T Consensus 415 d~~g~lWigt~------~~Gl~~~~~~~~~~~~-~~~~----~~~~~~v~~i~~d-----------------~~g~lwig 466 (781)
T 3v9f_A 415 DSEGNLWFGTY------LGNISYYNTRLKKFQI-IELE----KNELLDVRVFYED-----------------KNKKIWIG 466 (781)
T ss_dssp CTTSCEEEEET------TEEEEEECSSSCEEEE-CCST----TTCCCCEEEEEEC-----------------TTSEEEEE
T ss_pred CCCCCEEEEec------cCCEEEEcCCCCcEEE-eccC----CCCCCeEEEEEEC-----------------CCCCEEEE
Confidence 88887666432 2233333321100000 0000 0011122222211 23456666
Q ss_pred EcCCcEEEEeCCCCceeEEEecc----cccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcC
Q psy15549 388 ATENNILLYDTQHASPFAFIANI----HYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEI 446 (621)
Q Consensus 388 ~~dg~i~iwd~~~~~~~~~~~~~----h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~ 446 (621)
+. +.|..||..+++........ ....|.+++..++|.+.+.. .++-|..|+..++..
T Consensus 467 t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 467 TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLV 527 (781)
T ss_dssp ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEE
T ss_pred EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeE
Confidence 66 67999998877654433111 13579999999999865544 433477787765543
No 250
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.55 E-value=0.00017 Score=69.03 Aligned_cols=153 Identities=12% Similarity=0.100 Sum_probs=88.7
Q ss_pred CcEEEEEEccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCC--cEEEEEc
Q psy15549 82 KAVNVVRFSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDES--TIIVWKQ 158 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg--~i~vwd~ 158 (621)
.....++|+++|+++++.. .+.|..|+..... ... + .....+..+++.++|+++++..... .|..++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~------~~~--~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ------QIH--A-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE------EEE--E-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce------EEE--E-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence 4577899999999777764 6667777654321 111 1 1234688999999999666554332 4666666
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEec------
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGK-NLGILT------ 231 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~-~~~~~~------ 231 (621)
.+++.. . .... ........++..+++..+++-..++.|+++|..++. .+....
T Consensus 103 ~~g~~~-~------------------~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 103 SDGTVE-T------------------LLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp TTSCEE-E------------------EEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred CCCeEE-E------------------EEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccc
Confidence 555421 0 0111 112223455555555545554458899999987653 121110
Q ss_pred ---cCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEccC
Q psy15549 232 ---EHKKFVQGVAWDPKNQYVATLS-SDRSLRTYSIQS 265 (621)
Q Consensus 232 ---~~~~~v~~l~~sp~~~~l~s~~-~dg~i~iwd~~~ 265 (621)
........+ +|++++|+.+. ..+.|..|++..
T Consensus 163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence 111234455 78888776655 467899999864
No 251
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.54 E-value=6.3e-05 Score=78.67 Aligned_cols=51 Identities=8% Similarity=-0.035 Sum_probs=35.8
Q ss_pred CCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCC-eEEEE
Q psy15549 380 PYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGK-VLIAS 430 (621)
Q Consensus 380 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~ 430 (621)
.++.++.++.|+.++.||..+++.+..+..+......-+.+..+|+ |+++.
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence 4577888889999999999999998887543322223355667886 44443
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.51 E-value=4.6e-05 Score=79.76 Aligned_cols=49 Identities=14% Similarity=0.042 Sum_probs=33.8
Q ss_pred CCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEE
Q psy15549 380 PYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLI 428 (621)
Q Consensus 380 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~ 428 (621)
.++.+++++.|+.|+.||..+++.+..+..+....-.-+.+..+|+.++
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 3467888889999999999999999888654322222234556776444
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.49 E-value=1.2e-05 Score=77.82 Aligned_cols=220 Identities=9% Similarity=0.026 Sum_probs=121.8
Q ss_pred CeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccc-c-ceeeccccccccCcEEEEEEcc-
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGI-A-NVEFASDLSRHQKAVNVVRFSP- 91 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~-~-~~~~~~~~~~h~~~V~~l~~sp- 91 (621)
.-.++++++++. +++++..++.|..|+....... .|......... . .-............+..+++.+
T Consensus 20 ~p~~i~~d~~g~-----~l~v~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~ 90 (322)
T 2fp8_A 20 APNSFTFDSTNK-----GFYTSVQDGRVIKYEGPNSGFV----DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ 90 (322)
T ss_dssp CCCCEECCTTCS-----SEEEECTTSEEEEECCTTTCEE----EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred CceEEEEcCCCC-----EEEEEcCCCeEEEECCCCCceE----EEecccccccccccccccchhccccCCCCceEEEcCC
Confidence 467889999986 7888888999983433221100 11110000000 0 0000000011224578999998
Q ss_pred CCCEEEEEcCCceEEEEeccCccccccceecc-cccc-cCCCeEEEEECC-CCCEEEEEeC-----------------CC
Q psy15549 92 NGELLASGDDVGKEIWYLTERESGIANVEFAS-DLSR-HQKAVNVVRFSP-NGELLASGDD-----------------ES 151 (621)
Q Consensus 92 dg~~las~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~-h~~~V~~i~~sp-~g~~l~s~s~-----------------dg 151 (621)
+|+++++...+++..++...+.. ..+. ...+ .......+++.+ +|++.++-.. ++
T Consensus 91 ~g~l~v~d~~~~i~~~d~~~g~~-----~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 91 NNQLYIVDCYYHLSVVGSEGGHA-----TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp TTEEEEEETTTEEEEECTTCEEC-----EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred CCcEEEEECCCCEEEEeCCCCEE-----EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence 67666665566677776543211 1111 1111 123467899999 8987666432 35
Q ss_pred cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCc--EEE
Q psy15549 152 TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISG-SVDNTAIMWDVHKGK--NLG 228 (621)
Q Consensus 152 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~-~~dg~i~vwd~~~~~--~~~ 228 (621)
.|..||..++.. ..+.........++|+|++++|+.+ ...+.|.+|++.... ...
T Consensus 166 ~v~~~d~~~~~~----------------------~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~ 223 (322)
T 2fp8_A 166 RLIKYDPSTKET----------------------TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE 223 (322)
T ss_dssp EEEEEETTTTEE----------------------EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE
T ss_pred eEEEEeCCCCEE----------------------EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc
Confidence 677777655432 1111111234679999999876665 456899999987421 111
Q ss_pred EeccCCcceEEEEEcCCCCEEEEEeC----------CCcEEEEEccCceeeeec
Q psy15549 229 ILTEHKKFVQGVAWDPKNQYVATLSS----------DRSLRTYSIQSKKVISRA 272 (621)
Q Consensus 229 ~~~~~~~~v~~l~~sp~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~ 272 (621)
.+....+ ...++++++|++.++... .+.|..+|.. ++.+..+
T Consensus 224 ~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~ 275 (322)
T 2fp8_A 224 VLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVI 275 (322)
T ss_dssp EEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEE
T ss_pred eEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEE
Confidence 2211223 678999999987665544 4568888863 5555544
No 254
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.48 E-value=2e-05 Score=76.23 Aligned_cols=255 Identities=13% Similarity=0.072 Sum_probs=134.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCC-ccc-ccccccceeeeeeecCCCCCeEEEEECC-CCCEE
Q psy15549 131 AVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSN-LDE-ENVNKEHWIVTKILRGHLEDVYDISWSP-TSTHL 207 (621)
Q Consensus 131 ~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~sp-d~~~l 207 (621)
...+++|.+++++++++..++.|..|+..++... .+.... ... ...... . ..........+..+++.+ ++ .|
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~p~gi~~~~~~g-~l 94 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENS-T--DAEKRPLCGRTYDISYNLQNN-QL 94 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTC-C--CGGGHHHHCCEEEEEEETTTT-EE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccc-c--chhccccCCCCceEEEcCCCC-cE
Confidence 3456889999987888888899999987654321 000000 000 000000 0 000000123578999998 55 45
Q ss_pred EEEeCCCeEEEEECCCCcEEEEecc-----CCcceEEEEEcC-CCCEEEEEeC-----------------CCcEEEEEcc
Q psy15549 208 ISGSVDNTAIMWDVHKGKNLGILTE-----HKKFVQGVAWDP-KNQYVATLSS-----------------DRSLRTYSIQ 264 (621)
Q Consensus 208 ~s~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~l~~sp-~~~~l~s~~~-----------------dg~i~iwd~~ 264 (621)
+.+...+.|..+|..++.. ..+.. .......+++.+ +|++.++-.. ++.|..||..
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 5565556688888765532 22211 112467899999 8987665432 3668888876
Q ss_pred CceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCC
Q psy15549 265 SKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNK 344 (621)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~ 344 (621)
+++....... ......++|+|+|++|+++.. ..+.+..+++.... . .
T Consensus 174 ~~~~~~~~~~------------------------~~~p~gia~~~dg~~lyv~d~----~~~~I~~~~~~~~~----~-~ 220 (322)
T 2fp8_A 174 TKETTLLLKE------------------------LHVPGGAEVSADSSFVLVAEF----LSHQIVKYWLEGPK----K-G 220 (322)
T ss_dssp TTEEEEEEEE------------------------ESCCCEEEECTTSSEEEEEEG----GGTEEEEEESSSTT----T-T
T ss_pred CCEEEEeccC------------------------CccCcceEECCCCCEEEEEeC----CCCeEEEEECCCCc----C-C
Confidence 6653221110 011257999999997766531 33445544433100 0 0
Q ss_pred CceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEc----------CCcEEEEeCCCCceeEEEeccc---
Q psy15549 345 PAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVAT----------ENNILLYDTQHASPFAFIANIH--- 411 (621)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~h--- 411 (621)
....+. ...- |.-. .+..++..+++... .+.|..+|.. ++.+..+....
T Consensus 221 ~~~~~~-------~~~g-P~gi---------~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~ 282 (322)
T 2fp8_A 221 TAEVLV-------KIPN-PGNI---------KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA 282 (322)
T ss_dssp CEEEEE-------ECSS-EEEE---------EECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT
T ss_pred ccceEE-------eCCC-CCCe---------EECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCc
Confidence 000000 0000 2111 22235555555544 4678888874 66666654322
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEEEecC
Q psy15549 412 YTKLTDITWSSDGKVLIASSTDGYCSIISFGD 443 (621)
Q Consensus 412 ~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~ 443 (621)
...++++++ .+|+++++....+.|..+++..
T Consensus 283 ~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 283 GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred cccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 245777777 4666666666788899998763
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.48 E-value=1.5e-05 Score=71.89 Aligned_cols=118 Identities=8% Similarity=-0.012 Sum_probs=78.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCC--cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEE
Q psy15549 130 KAVNVVRFSPNGELLASGDDES--TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHL 207 (621)
Q Consensus 130 ~~V~~i~~sp~g~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l 207 (621)
.....+.|++ +.++.+.+.+| .|+++|+.+++.+..+ .+..+ ..-..+++. ++.|
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-------------------~l~~~-~fgeGi~~~--~~~l 77 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-------------------EVPPP-YFGAGIVAW--RDRL 77 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-------------------ECCTT-CCEEEEEEE--TTEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-------------------eCCCC-cceeEEEEe--CCEE
Confidence 3466899986 56666666654 8999999999864221 11111 111233443 3444
Q ss_pred E-EEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecc
Q psy15549 208 I-SGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRAC 273 (621)
Q Consensus 208 ~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 273 (621)
. ..-.++.+.+||..+.+.+.++..... -..++ +++..|+.+..++.|.++|..+.+.+..+.
T Consensus 78 y~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~ 141 (243)
T 3mbr_X 78 IQLTWRNHEGFVYDLATLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIK 141 (243)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred EEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEE
Confidence 4 445689999999999999999865332 23444 567777766678899999999988776653
No 256
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.47 E-value=0.00086 Score=64.73 Aligned_cols=194 Identities=10% Similarity=0.128 Sum_probs=104.2
Q ss_pred CCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeecc-ccccccCcEEEEEEcc
Q psy15549 13 RDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFAS-DLSRHQKAVNVVRFSP 91 (621)
Q Consensus 13 ~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp 91 (621)
...+.+|.|.+++. .+++|. .|.| ++..+.++. ++... ........+.+|.|.+
T Consensus 35 ~~~~~~v~~~~~~~-----~~~~G~-~g~i---------------~~s~DgG~t----W~~~~~~~~~~~~~~~~i~~~~ 89 (327)
T 2xbg_A 35 TATILDMSFIDRHH-----GWLVGV-NATL---------------METRDGGQT----WEPRTLVLDHSDYRFNSVSFQG 89 (327)
T ss_dssp SSCEEEEEESSSSC-----EEEEET-TTEE---------------EEESSTTSS----CEECCCCCSCCCCEEEEEEEET
T ss_pred CCcEEEEEECCCCc-----EEEEcC-CCeE---------------EEeCCCCCC----CeECCCCCCCCCccEEEEEecC
Confidence 45799999987776 667554 5544 222222221 11111 0112244688999986
Q ss_pred CCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCC
Q psy15549 92 NGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSN 171 (621)
Q Consensus 92 dg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 171 (621)
+..++++..+ .|+....++.. +..+.....+...+..+.+.+++..++.+ .+|.|.. ..+.++
T Consensus 90 -~~~~~~g~~g--~i~~S~DgG~t---W~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~--------- 152 (327)
T 2xbg_A 90 -NEGWIVGEPP--IMLHTTDGGQS---WSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGK--------- 152 (327)
T ss_dssp -TEEEEEEETT--EEEEESSTTSS---CEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTS---------
T ss_pred -CeEEEEECCC--eEEEECCCCCC---ceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCC---------
Confidence 5555555454 34444443321 12222111233457778877777666555 4554422 112222
Q ss_pred cccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC--CCCcEEEEeccCCcceEEEEEcCCCCEE
Q psy15549 172 LDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDV--HKGKNLGILTEHKKFVQGVAWDPKNQYV 249 (621)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~l 249 (621)
.|.. ........+..+.+.+++.+++++...+..+-+|- .+.+.+. ......+..+.+.+++..+
T Consensus 153 ---------tW~~--~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~ 219 (327)
T 2xbg_A 153 ---------NWQA--LVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW 219 (327)
T ss_dssp ---------SEEE--EECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE
T ss_pred ---------CCEE--eecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE
Confidence 1322 22345567899999999888776654433333442 2233332 2345678889999988765
Q ss_pred EEEeCCCcEEEEE
Q psy15549 250 ATLSSDRSLRTYS 262 (621)
Q Consensus 250 ~s~~~dg~i~iwd 262 (621)
+ ++.+|.+++.+
T Consensus 220 ~-~~~~G~~~~s~ 231 (327)
T 2xbg_A 220 M-IVNGGKIAFSD 231 (327)
T ss_dssp E-EETTTEEEEEE
T ss_pred E-EeCCceEEEec
Confidence 4 55678777664
No 257
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.45 E-value=2.1e-05 Score=85.57 Aligned_cols=157 Identities=15% Similarity=0.082 Sum_probs=92.9
Q ss_pred cccC-cEEEEEEc-cCCCEEEEEcC--C----ceEEEEeccC-ccccccceecccccccCCCeEEEEECCCCCEEEEEeC
Q psy15549 79 RHQK-AVNVVRFS-PNGELLASGDD--V----GKEIWYLTER-ESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDD 149 (621)
Q Consensus 79 ~h~~-~V~~l~~s-pdg~~las~~d--~----~v~iw~~~~~-~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~ 149 (621)
+|.. .+...+|| |||++||.+.+ + .|.++++.++ .. ....+.. ....++|+|||+.|+....
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~------l~~~~~~---~~~~~~WspDg~~l~y~~~ 240 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT------IADKVSG---TNGEIVWGPDHTSLFYVTK 240 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC------CCCCEEE---ECSCCEECSSTTEEEEEEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe------CCccccC---ceeeEEEecCCCEEEEEEE
Confidence 4443 68889999 99999997652 1 2778887765 31 0111111 1346889999998887766
Q ss_pred C-----CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeec-CCCCCeEEEEECCCCCEEEEEeC---CCeEEEEE
Q psy15549 150 E-----STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILR-GHLEDVYDISWSPTSTHLISGSV---DNTAIMWD 220 (621)
Q Consensus 150 d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~spd~~~l~s~~~---dg~i~vwd 220 (621)
+ ..|.++++.++.... ...+. ........+.|+|||++|+..+. ...|+++|
T Consensus 241 d~~~~~~~v~~~~lgt~~~~~-------------------~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d 301 (751)
T 2xe4_A 241 DETLRENKVWRHVMGKLQSED-------------------VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLD 301 (751)
T ss_dssp CTTCCEEEEEEEETTSCGGGC-------------------EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred CCCCCCCEEEEEECCCCchhc-------------------EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEE
Confidence 5 257777876653210 01111 22334678899999998887653 35788899
Q ss_pred CCCCc-EE--EEec-cCCcceEEEEEcCCCCEEEEEeC-C--C--cEEEEEcc
Q psy15549 221 VHKGK-NL--GILT-EHKKFVQGVAWDPKNQYVATLSS-D--R--SLRTYSIQ 264 (621)
Q Consensus 221 ~~~~~-~~--~~~~-~~~~~v~~l~~sp~~~~l~s~~~-d--g--~i~iwd~~ 264 (621)
+.++. .. ..+. ........+.|+. |..|+..+. + + .|..+++.
T Consensus 302 ~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 302 LRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp SSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETT
T ss_pred CCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCC
Confidence 98752 22 3333 3334445555544 555554443 3 2 45555554
No 258
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=0.00082 Score=73.68 Aligned_cols=300 Identities=10% Similarity=0.023 Sum_probs=163.1
Q ss_pred CcEEEEEEccCCCEEEEEcCCceEEEEeccCccccccceeccc-----ccccCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q psy15549 82 KAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASD-----LSRHQKAVNVVRFSPNGELLASGDDESTIIVW 156 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~-----~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vw 156 (621)
..|.++...++|.+.+...++++..|+...... ..... ..-....|.++...++|.+.+. +.+ -|.+|
T Consensus 163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~-----~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~ 235 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYIGHVEGGLSILSLNDKSV-----KHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALF 235 (781)
T ss_dssp CCEEEEEEEETTEEEEEETTTEEEEEETTTTEE-----EEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCeEEEcCCCCce-----EeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheE
Confidence 468888888888877765566888888665411 11100 0012356889998888876554 444 58889
Q ss_pred EccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----
Q psy15549 157 KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILT----- 231 (621)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~----- 231 (621)
|..++.... +.... ..........|.++...++|. |..|+..+-|.++|..++.......
T Consensus 236 d~~~~~~~~-~~~~~-------------~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~ 300 (781)
T 3v9f_A 236 NANTETFTN-FHNNP-------------GNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEF 300 (781)
T ss_dssp ETTTTEEEC-------------------------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEE
T ss_pred CCCCCcEEE-EEcCC-------------CccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeecccccc
Confidence 976654211 10000 000011245699999988875 5556665568899987665322111
Q ss_pred ---------cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccce
Q psy15549 232 ---------EHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFF 302 (621)
Q Consensus 232 ---------~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 302 (621)
.....|.++...++|.+ ..|+.++-|..|+..+............. . ........|
T Consensus 301 ~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~--~------------~~~l~~~~v 365 (781)
T 3v9f_A 301 IREGDNNYSLSNASARYIFQDSFNNI-WIGTWGGGINFISNAPPTFHTWSYSPTQM--N------------ESSLSNKVV 365 (781)
T ss_dssp ECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBSSCEEEECSSCCSCEEEC----CC--C------------SSCCSSSCE
T ss_pred ccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecCCeEEEeCCCCCcceeeccCcccc--c------------cCCCCCcce
Confidence 12456899999988874 45776777888887654432211000000 0 000112357
Q ss_pred eeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCc
Q psy15549 303 RRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYR 382 (621)
Q Consensus 303 ~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (621)
.++...++|.+.+.. .++.+..++........ ...+ . ......+.++... .++
T Consensus 366 ~~i~~d~~g~lWigt------~~~Gl~~~~~~~~~~~~-~~~~-~--~~~~~~v~~i~~d-----------------~~g 418 (781)
T 3v9f_A 366 SSVCDDGQGKLWIGT------DGGGINVFENGKRVAIY-NKEN-R--ELLSNSVLCSLKD-----------------SEG 418 (781)
T ss_dssp EEEEECTTSCEEEEE------BSSCEEEEETTEEEEEC-C--------CCCSBEEEEEEC-----------------TTS
T ss_pred EEEEEcCCCCEEEEe------CCCcEEEEECCCCeEEE-ccCC-C--CCCCcceEEEEEC-----------------CCC
Confidence 888888888766543 23344444432211000 0000 0 0111222332221 234
Q ss_pred EEEEEEcCCcEEEEeCCCCceeEEEe-cccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCC
Q psy15549 383 IVIAVATENNILLYDTQHASPFAFIA-NIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIG 447 (621)
Q Consensus 383 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~ 447 (621)
.|.+++.++.|..||..+++...... ......|.++...++|.+.+. +. +-|.+|+..+++..
T Consensus 419 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 419 NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVI 482 (781)
T ss_dssp CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCC
T ss_pred CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEE
Confidence 56667777789999988775332211 113467999999988875554 44 55888998876653
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.43 E-value=2.5e-05 Score=83.65 Aligned_cols=75 Identities=9% Similarity=0.126 Sum_probs=49.4
Q ss_pred CcEEEEEEccCCCEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe-CC-----CcE
Q psy15549 82 KAVNVVRFSPNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-DE-----STI 153 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s-~d-----g~i 153 (621)
....++++..+|++++.|+ +..+.+||...... ..+..+..... -.+++..+++++++.|+ .+ ..+
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W-----~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~ 316 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW-----IPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNG 316 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE-----EECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCE
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCce-----eECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccc
Confidence 3344577889999999988 44689999876632 22222222211 23456667899999988 34 468
Q ss_pred EEEEccCCC
Q psy15549 154 IVWKQKTDQ 162 (621)
Q Consensus 154 ~vwd~~~~~ 162 (621)
.+||..+..
T Consensus 317 e~yd~~t~~ 325 (656)
T 1k3i_A 317 EVYSPSSKT 325 (656)
T ss_dssp EEEETTTTE
T ss_pred eEeCCCCCc
Confidence 899987654
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.41 E-value=5.5e-05 Score=79.12 Aligned_cols=217 Identities=10% Similarity=0.039 Sum_probs=117.0
Q ss_pred EEEECCCCCEEEEEeCC----------------CeEEEEECCCCcEEEEeccCCc---------ceEEEEEc-CCC---C
Q psy15549 197 DISWSPTSTHLISGSVD----------------NTAIMWDVHKGKNLGILTEHKK---------FVQGVAWD-PKN---Q 247 (621)
Q Consensus 197 ~i~~spd~~~l~s~~~d----------------g~i~vwd~~~~~~~~~~~~~~~---------~v~~l~~s-p~~---~ 247 (621)
.+++.++..+++.+..+ +.|..+|..+|+.+..++.... ...-+... .+| .
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~ 324 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK 324 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence 35566677777777654 3899999999999877653211 11112222 567 4
Q ss_pred EEEEEeCCCcEEEEEccCceeeeecccCCCC-----C--CCccccccc---------cccccccCCcccceeeeeecCCC
Q psy15549 248 YVATLSSDRSLRTYSIQSKKVISRACRSKLP-----V--DSSHELFDK---------VVPLFHDDTMKSFFRRLTFSPDG 311 (621)
Q Consensus 248 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~--~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~spdg 311 (621)
.++.++.+|.+.++|..+++.+......... + ..+...... ...++-...-...-..++++|+.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 404 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR 404 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence 6777889999999999999988765432200 0 000000000 00000000000112467889988
Q ss_pred CeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcE-EEEE--E
Q psy15549 312 QLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRI-VIAV--A 388 (621)
Q Consensus 312 ~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~--~ 388 (621)
.++++.. .+.....+ .. . .....+. ..+ . ..+ +... +
T Consensus 405 ~~~yv~~-----~~~~~~~~-~~---~-------~~~~~g~-~~~-g----------------------~~~~~~~~p~~ 444 (599)
T 1w6s_A 405 ELFFMGI-----NHICMDWE-PF---M-------LPYKAGQ-FFV-G----------------------ATLNMYPGPKG 444 (599)
T ss_dssp TEEEEEE-----ECEEEEEE-EC---C-------CCCCTTS-CCC-C----------------------EEEEEEECTTS
T ss_pred CEEEEec-----cccceeee-cc---c-------ccccCCc-cee-c----------------------ccceeccCCcC
Confidence 8887765 11110000 00 0 0000000 000 0 000 0000 1
Q ss_pred ------cCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCC
Q psy15549 389 ------TENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSG 455 (621)
Q Consensus 389 ------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~ 455 (621)
..|.|.-||+.+++.+-....+ .++..-.....|..++.++.||.++.||..+|+.+-.+..+..
T Consensus 445 ~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g 515 (599)
T 1w6s_A 445 DRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG 515 (599)
T ss_dssp BTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred CcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence 3578999999999887766432 2222211223566788899999999999999998877765543
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.40 E-value=8.2e-06 Score=74.19 Aligned_cols=188 Identities=10% Similarity=0.104 Sum_probs=114.8
Q ss_pred cCCCC--eEEEeccccccCCcceEEEEecCCc--eEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 11 HNRDP--VLSVDIQLKQEKDNCYRIVTGGADS--HVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 11 ~h~~~--v~~l~~spd~~~~~~~~l~tg~~dg--~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
.|... ...|.|+ ++. ++++.+.+| .|+ ++|+.+++.... +.- ......
T Consensus 38 phd~~~ftqGL~~~-~~~-----LyestG~~g~S~v~--------------~vD~~Tgkv~~~-------~~l-~~~~Fg 89 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NGY-----FYESTGLNGRSSIR--------------KVDIESGKTLQQ-------IEL-GKRYFG 89 (262)
T ss_dssp ECCTTCEEEEEEEE-TTE-----EEEEEEETTEEEEE--------------EECTTTCCEEEE-------EEC-CTTCCE
T ss_pred cCCCCcccceEEEE-CCE-----EEEECCCCCCceEE--------------EEECCCCcEEEE-------Eec-CCccce
Confidence 45443 4788888 665 666666655 888 666655543222 110 122333
Q ss_pred EEEccCCCEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q psy15549 87 VRFSPNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDL 164 (621)
Q Consensus 87 l~~spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~ 164 (621)
.-..+++..|.... ++.+.+||..+. +.+.++...... +.++ ++++.|+.+..++.|.++|..+.+.+
T Consensus 90 eGit~~g~~ly~ltw~~~~v~v~D~~t~-------~~~~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~ 159 (262)
T 3nol_A 90 EGISDWKDKIVGLTWKNGLGFVWNIRNL-------RQVRSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESLTPV 159 (262)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEETTTC-------CEEEEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTCSEE
T ss_pred eEEEEeCCEEEEEEeeCCEEEEEECccC-------cEEEEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCCeEE
Confidence 22333455555554 778899998876 444444332221 2333 56777777666788999999888754
Q ss_pred CCCCCCCcccccccccceeeeeeecCCC-CCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC----------
Q psy15549 165 PEFPSSNLDEENVNKEHWIVTKILRGHL-EDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEH---------- 233 (621)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---------- 233 (621)
..+. ....+.. ..++.+.|. +|...+..-.++.|.+.|..+++.+..+...
T Consensus 160 ~~I~-----------------V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~ 221 (262)
T 3nol_A 160 RTIT-----------------VTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLP 221 (262)
T ss_dssp EEEE-----------------CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCC
T ss_pred EEEE-----------------eccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccccc
Confidence 3321 0011112 345567776 7765655556889999999999998877431
Q ss_pred --CcceEEEEEcCCCCEEEEEeC
Q psy15549 234 --KKFVQGVAWDPKNQYVATLSS 254 (621)
Q Consensus 234 --~~~v~~l~~sp~~~~l~s~~~ 254 (621)
......++|+|+++.|++.+.
T Consensus 222 ~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 222 SPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSCCCEEEEEEETTTTEEEEEET
T ss_pred CcCCceEEEEEcCCCCEEEEECC
Confidence 134579999999888877765
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.40 E-value=3.2e-05 Score=80.95 Aligned_cols=220 Identities=13% Similarity=0.030 Sum_probs=115.7
Q ss_pred EEEECCCCCEEEEEeCC----------------CeEEEEECCCCcEEEEecc--CC--------cceEEEEEcCCCC---
Q psy15549 197 DISWSPTSTHLISGSVD----------------NTAIMWDVHKGKNLGILTE--HK--------KFVQGVAWDPKNQ--- 247 (621)
Q Consensus 197 ~i~~spd~~~l~s~~~d----------------g~i~vwd~~~~~~~~~~~~--~~--------~~v~~l~~sp~~~--- 247 (621)
.+++.++...++.++.+ +.|..+|..+|+.+..++. |. .++ -+...++|+
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEE
Confidence 35566666666666532 3699999999998877643 21 111 122234674
Q ss_pred EEEEEeCCCcEEEEEccCceeeeecccCC-CCC------CCccccccc-cc------cccccCC--cccceeeeeecCCC
Q psy15549 248 YVATLSSDRSLRTYSIQSKKVISRACRSK-LPV------DSSHELFDK-VV------PLFHDDT--MKSFFRRLTFSPDG 311 (621)
Q Consensus 248 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~------~~~~~~~~~-~~------~~~~~~~--~~~~i~~~~~spdg 311 (621)
.++.++.+|.+.++|..+++.+....... ... ..+...... .. ....... ....-..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 57778889999999999999887654322 000 000000000 00 0000000 00011467888988
Q ss_pred CeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCccc--ceeeeeccceeeecCCCCCCCCccCCCcEEEEEEc
Q psy15549 312 QLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQY--YSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVAT 389 (621)
Q Consensus 312 ~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (621)
.++++.+ .+....++..... ...+... ....+..+| . +. ....
T Consensus 398 g~~yv~~-----~~~~~~~~~~~~~-----------~~~g~~~~g~~~~~~~~~-------~---------~~---~~~~ 442 (571)
T 2ad6_A 398 RTLYAGL-----NHICMDWEPFMLP-----------YRAGQFFVGATLAMYPGP-------N---------GP---TKKE 442 (571)
T ss_dssp TEEEEEE-----ECEEEEEEECCCC-----------CCTTSCCCCEEEEEEECT-------T---------ST---TSCC
T ss_pred CEEEEEc-----hhccccccccccc-----------cccCCccccccceeccCc-------c---------cc---CCCC
Confidence 8887765 2211111110000 0000000 000000000 0 00 0013
Q ss_pred CCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCC
Q psy15549 390 ENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPS 454 (621)
Q Consensus 390 dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 454 (621)
++.|+.||..+++.+-..... ..+....+...+..++.++.||.|+.||..+|+.+-.+....
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCeEEEEECCCCCEEEEecCC--CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 578999999999987776432 233333333346677889999999999999999887766543
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.39 E-value=0.00038 Score=67.87 Aligned_cols=153 Identities=10% Similarity=0.056 Sum_probs=92.7
Q ss_pred cEEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEE-eCCCcEEEEEccCC
Q psy15549 83 AVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASG-DDESTIIVWKQKTD 161 (621)
Q Consensus 83 ~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~-s~dg~i~vwd~~~~ 161 (621)
...|.+..+ ..+|+.+....|+..++.... ... +......+..++|++....|+.+ ...+.|..+++...
T Consensus 35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~-------~~~-~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~ 105 (349)
T 3v64_C 35 RRSCKALGP-EPVLLFANRIDIRQVLPHRSE-------YTL-LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS 105 (349)
T ss_dssp SSCEEESSS-CCEEEEECBSCEEEECTTSCC-------EEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCccccccc-CceeEeecccceEEEeCCCCe-------eEE-eecCCCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence 345555555 456666666667666665431 111 11223457899999866555544 46678999988765
Q ss_pred CCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCcEEEEeccCCcceEEE
Q psy15549 162 QDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHL-ISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGV 240 (621)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l 240 (621)
... ............+++.+.+..| ++-...+.|.+.++........+.........+
T Consensus 106 ~~~---------------------~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~i 164 (349)
T 3v64_C 106 NVE---------------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI 164 (349)
T ss_dssp SCE---------------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEE
T ss_pred Cce---------------------EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceE
Confidence 421 1122222345778888755544 444556889999986554333343344567899
Q ss_pred EEcCCCCEEEEEeC-C-CcEEEEEccC
Q psy15549 241 AWDPKNQYVATLSS-D-RSLRTYSIQS 265 (621)
Q Consensus 241 ~~sp~~~~l~s~~~-d-g~i~iwd~~~ 265 (621)
+++|.+..|+.... . +.|..+++..
T Consensus 165 avdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 165 ALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred EEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 99997766665544 3 6787777754
No 264
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.36 E-value=0.00027 Score=64.69 Aligned_cols=212 Identities=14% Similarity=0.119 Sum_probs=122.7
Q ss_pred CCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccC
Q psy15549 13 RDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN 92 (621)
Q Consensus 13 ~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 92 (621)
.+.+..++|+|++. .++++...++.|. ..|.. +..... + .+.+ ....-.|++.++
T Consensus 26 ~~~lSGla~~~~~~----~L~aV~d~~~~I~--------------~ld~~-g~v~~~-i----~l~g-~~D~EGIa~~~~ 80 (255)
T 3qqz_A 26 TNNISSLTWSAQSN----TLFSTINKPAAIV--------------EMTTN-GDLIRT-I----PLDF-VKDLETIEYIGD 80 (255)
T ss_dssp CSCEEEEEEETTTT----EEEEEEETTEEEE--------------EEETT-CCEEEE-E----ECSS-CSSEEEEEECST
T ss_pred ccCcceeEEeCCCC----EEEEEECCCCeEE--------------EEeCC-CCEEEE-E----ecCC-CCChHHeEEeCC
Confidence 35799999999865 3555577788877 44443 221111 0 1222 245777888898
Q ss_pred CCEEEEEc-CCceEEEEeccCccccccceecc-cc--cccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q psy15549 93 GELLASGD-DVGKEIWYLTERESGIANVEFAS-DL--SRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFP 168 (621)
Q Consensus 93 g~~las~~-d~~v~iw~~~~~~~~~~~~~~~~-~~--~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~ 168 (621)
+.++++.. ++.+.++.+..... ........ .+ .......-.++|+|.++.|+++.+.....||.+........+
T Consensus 81 g~~~vs~E~~~~l~~~~v~~~~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l- 158 (255)
T 3qqz_A 81 NQFVISDERDYAIYVISLTPNSE-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL- 158 (255)
T ss_dssp TEEEEEETTTTEEEEEEECTTCC-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC-
T ss_pred CEEEEEECCCCcEEEEEcCCCCe-eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce-
Confidence 88766653 66788888766532 00011111 11 124556789999999887777776666667766521000000
Q ss_pred CCCcccccccccceeeeeeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEeccCC---------cceE
Q psy15549 169 SSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTS-THLISGSVDNTAIMWDVHKGKNLGILTEHK---------KFVQ 238 (621)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~ 238 (621)
.. ..... ..-..+...+.+++++|.. .+++.+.....|.++|.. ++.+..+.-.. ....
T Consensus 159 ----~i--~~~~~----~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpE 227 (255)
T 3qqz_A 159 ----HI--SKDKA----LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAE 227 (255)
T ss_dssp ----EE--EECHH----HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEE
T ss_pred ----ee--ecchh----hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCC
Confidence 00 00000 0001233457899999954 555666667889999964 66655543221 2467
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEc
Q psy15549 239 GVAWDPKNQYVATLSSDRSLRTYSI 263 (621)
Q Consensus 239 ~l~~sp~~~~l~s~~~dg~i~iwd~ 263 (621)
.|+|.++|+..+ .++.+.++.|.-
T Consensus 228 Gia~d~~G~lyI-vsE~n~~y~f~~ 251 (255)
T 3qqz_A 228 GVAMDASGNIYI-VSEPNRFYRFTP 251 (255)
T ss_dssp EEEECTTCCEEE-EETTTEEEEEEC
T ss_pred eeEECCCCCEEE-EcCCceEEEEEe
Confidence 999999998544 577776666643
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.36 E-value=0.00081 Score=64.58 Aligned_cols=147 Identities=10% Similarity=0.078 Sum_probs=87.1
Q ss_pred CEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCCCc
Q psy15549 94 ELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASG-DDESTIIVWKQKTDQDLPEFPSSNL 172 (621)
Q Consensus 94 ~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~ 172 (621)
.+|+.+..+.|+..++.... ....+ .....+..++|++.+..|+.+ ...+.|..+++.........
T Consensus 2 ~~ll~~~~~~I~~i~~~~~~-------~~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~----- 68 (316)
T 1ijq_A 2 AYLFFTNRHEVRKMTLDRSE-------YTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY----- 68 (316)
T ss_dssp CEEEEECBSSEEEEETTSCC-------CEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C-----
T ss_pred CEEEEECCCeEEEEECCCcc-------eEehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc-----
Confidence 35667777788888877642 11111 223467899999866555544 45688999998762100000
Q ss_pred ccccccccceeeeeeecCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEE
Q psy15549 173 DEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHL-ISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVAT 251 (621)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 251 (621)
...+.........+++.+.+..| ++-...+.|.++++........+.........++++|.+.+|+.
T Consensus 69 ------------~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~ 136 (316)
T 1ijq_A 69 ------------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW 136 (316)
T ss_dssp ------------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE
T ss_pred ------------EEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEE
Confidence 01122222345788888755545 44456789999998654433333333456789999997776665
Q ss_pred EeCC--CcEEEEEccC
Q psy15549 252 LSSD--RSLRTYSIQS 265 (621)
Q Consensus 252 ~~~d--g~i~iwd~~~ 265 (621)
+... +.|..+++..
T Consensus 137 ~d~~~~~~I~~~~~dG 152 (316)
T 1ijq_A 137 TDWGTPAKIKKGGLNG 152 (316)
T ss_dssp EECSSSCEEEEEETTS
T ss_pred EccCCCCeEEEEcCCC
Confidence 5543 6777777743
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.34 E-value=0.0003 Score=69.74 Aligned_cols=152 Identities=11% Similarity=0.053 Sum_probs=91.6
Q ss_pred EEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEE-EEeCCCcEEEEEccCCC
Q psy15549 84 VNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLA-SGDDESTIIVWKQKTDQ 162 (621)
Q Consensus 84 V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~-s~s~dg~i~vwd~~~~~ 162 (621)
-.|.+..+ ..+|+.+....|+.+++.... ...+......+..++|.+.+..|+ +-...+.|..+++....
T Consensus 79 ~~C~~~~~-~~~l~~~~~~~I~~i~~~~~~--------~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 149 (386)
T 3v65_B 79 RSCKALGP-EPVLLFANRIDIRQVLPHRSE--------YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN 149 (386)
T ss_dssp SCEEECSS-CCEEEEECBSCEEEECTTSCC--------CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred CeECCccc-cceeEeecCccceeeccCCCc--------EEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC
Confidence 34444444 456666666777777765431 111122234578999998655555 44466789999987654
Q ss_pred CCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEECCCCcEEEEeccCCcceEEEE
Q psy15549 163 DLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLI-SGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVA 241 (621)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~ 241 (621)
.. ............+++.+.+..|+ +-...+.|.+.++........+.........++
T Consensus 150 ~~---------------------~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~gia 208 (386)
T 3v65_B 150 VE---------------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 208 (386)
T ss_dssp EE---------------------EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEE
T ss_pred cE---------------------EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEE
Confidence 21 11222223456788887555554 444567888888865443334443445678999
Q ss_pred EcCCCCEEEEEeC-C-CcEEEEEccC
Q psy15549 242 WDPKNQYVATLSS-D-RSLRTYSIQS 265 (621)
Q Consensus 242 ~sp~~~~l~s~~~-d-g~i~iwd~~~ 265 (621)
++|.+.+|+.... . +.|..+++..
T Consensus 209 vdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 209 LHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTS
T ss_pred EEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 9997777665554 3 5677777654
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.33 E-value=0.0003 Score=67.38 Aligned_cols=232 Identities=12% Similarity=0.037 Sum_probs=129.4
Q ss_pred CCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCC
Q psy15549 14 DPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNG 93 (621)
Q Consensus 14 ~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 93 (621)
.....++|+++++ ++++-..++.|. .|+...... . .......+..+++.++|
T Consensus 32 ~~pegia~~~~g~-----lyv~d~~~~~I~--------------~~d~~g~~~--~-------~~~~~~~p~gia~~~dG 83 (306)
T 2p4o_A 32 TFLENLASAPDGT-----IFVTNHEVGEIV--------------SITPDGNQQ--I-------HATVEGKVSGLAFTSNG 83 (306)
T ss_dssp CCEEEEEECTTSC-----EEEEETTTTEEE--------------EECTTCCEE--E-------EEECSSEEEEEEECTTS
T ss_pred CCcceEEECCCCC-----EEEEeCCCCeEE--------------EECCCCceE--E-------EEeCCCCceeEEEcCCC
Confidence 4678899999987 777777788888 555443211 0 01112458899999999
Q ss_pred CEEEEEc-CCc--eEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCC-CCCCCC
Q psy15549 94 ELLASGD-DVG--KEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQD-LPEFPS 169 (621)
Q Consensus 94 ~~las~~-d~~--v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~-~~~~~~ 169 (621)
+++++.. .+. +..++...+. +..+..+. .......++..+++..+++-..++.|.++|..++.. +.....
T Consensus 84 ~l~vad~~~~~~~v~~~d~~~g~-----~~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~ 157 (306)
T 2p4o_A 84 DLVATGWNADSIPVVSLVKSDGT-----VETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHP 157 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTSC-----EEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECG
T ss_pred cEEEEeccCCcceEEEEcCCCCe-----EEEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECC
Confidence 9766654 334 4444444431 11111111 122234555555555555554678888888764311 000000
Q ss_pred CCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCC-CcE--EEEeccCCcceEEEEEcCC
Q psy15549 170 SNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS-VDNTAIMWDVHK-GKN--LGILTEHKKFVQGVAWDPK 245 (621)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~-~dg~i~vwd~~~-~~~--~~~~~~~~~~v~~l~~sp~ 245 (621)
... .......-.....+ +++++.|+.+. ..+.|..|++.. +.. ...+.. ......++++++
T Consensus 158 -~~~-----------~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~d 222 (306)
T 2p4o_A 158 -MLA-----------RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVE 222 (306)
T ss_dssp -GGS-----------CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTT
T ss_pred -ccc-----------cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCC
Confidence 000 00001111234555 77887666554 468999999864 321 111111 133567899999
Q ss_pred CCEEEEEeCCCcEEEEEccCceeee--ecccCCCCCCCccccccccccccccCCcccceeeeeec---CCCCeEEecc
Q psy15549 246 NQYVATLSSDRSLRTYSIQSKKVIS--RACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS---PDGQLLIAPS 318 (621)
Q Consensus 246 ~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---pdg~~l~~~s 318 (621)
|+++++....+.|.++|.. ++... .+.. .-...++++|. |+++.|++++
T Consensus 223 G~l~va~~~~~~V~~~~~~-G~~~~~~~~~~-----------------------~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 223 GNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ-----------------------GVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp CCEEEECBTTCCEEEECTT-CCEEEEECGGG-----------------------TCTTEEEEEECCSTTTTTEEEEEE
T ss_pred CCEEEEeCCCCeEEEECCC-CCEEEEeeccc-----------------------ccCCceEEEEecccCCCCEEEEEC
Confidence 9877666667889999975 44322 1210 01235789998 8988887766
No 268
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.31 E-value=3.4e-05 Score=70.15 Aligned_cols=181 Identities=9% Similarity=0.012 Sum_probs=112.5
Q ss_pred eEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE--EEEccCC
Q psy15549 16 VLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV--VRFSPNG 93 (621)
Q Consensus 16 v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~--l~~spdg 93 (621)
...|.|+. +. ++++.+.+|.|+ ++|+.+++..... +. ..... +++. +
T Consensus 57 tqGL~~~~-~~-----Ly~stG~~g~v~--------------~iD~~Tgkv~~~~------l~---~~~FgeGit~~--g 105 (268)
T 3nok_A 57 TQGLVFHQ-GH-----FFESTGHQGTLR--------------QLSLESAQPVWME------RL---GNIFAEGLASD--G 105 (268)
T ss_dssp EEEEEEET-TE-----EEEEETTTTEEE--------------ECCSSCSSCSEEE------EC---TTCCEEEEEEC--S
T ss_pred cceEEEEC-CE-----EEEEcCCCCEEE--------------EEECCCCcEEeEE------CC---CCcceeEEEEe--C
Confidence 36888874 44 777888888999 6666655543320 11 12222 4443 4
Q ss_pred CEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCC
Q psy15549 94 ELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSN 171 (621)
Q Consensus 94 ~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 171 (621)
..|.... ++.+.+||..+. +.+.++..... -+.++ ++++.|+.+..++.|.++|..+.+.+..+..
T Consensus 106 ~~Ly~ltw~~~~v~V~D~~Tl-------~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V-- 173 (268)
T 3nok_A 106 ERLYQLTWTEGLLFTWSGMPP-------QRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQV-- 173 (268)
T ss_dssp SCEEEEESSSCEEEEEETTTT-------EEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEEC--
T ss_pred CEEEEEEccCCEEEEEECCcC-------cEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEe--
Confidence 4444433 888999998876 44444443222 23444 4678887777788999999998876533210
Q ss_pred cccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC-------------CcceE
Q psy15549 172 LDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEH-------------KKFVQ 238 (621)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~ 238 (621)
..-...-..++.+.|. +|...+....+..|.+.|..+++.+..+... ..-..
T Consensus 174 --------------~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlN 238 (268)
T 3nok_A 174 --------------KLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLN 238 (268)
T ss_dssp --------------EETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEE
T ss_pred --------------CCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceE
Confidence 0000111245667777 7765555556889999999999988877421 13568
Q ss_pred EEEEcCCCCEEEEEeC
Q psy15549 239 GVAWDPKNQYVATLSS 254 (621)
Q Consensus 239 ~l~~sp~~~~l~s~~~ 254 (621)
.|+|+|+++.|++.+.
T Consensus 239 GIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 239 GIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEECTTTCCEEEEET
T ss_pred EEEEcCCCCEEEEeCC
Confidence 9999998766665553
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.30 E-value=0.00016 Score=75.65 Aligned_cols=91 Identities=12% Similarity=0.012 Sum_probs=57.5
Q ss_pred cCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcccCCCCCcccc-cCCCCCCC
Q psy15549 389 TENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPYVPPSGEESK-ENDPTKGE 467 (621)
Q Consensus 389 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 467 (621)
.+|.|.-||+.+++.+-..... .++..-.....|.+++.++.||.++.||..+|+.+-.+..+...... +.+..+|+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CcceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence 3688999999999987766432 22222222224667888999999999999999988877765543322 23335666
Q ss_pred CcccC--CCcccHHHh
Q psy15549 468 PVRSE--DKPRSAEQA 481 (621)
Q Consensus 468 ~~~s~--~~~~~~~~w 481 (621)
..+.. ...+.+-+|
T Consensus 542 qYv~~~~G~gg~~~~~ 557 (582)
T 1flg_A 542 QYLGVTVGYGGAVPLW 557 (582)
T ss_dssp EEEEEEECCCSHHHHH
T ss_pred EEEEEEccCCCccccc
Confidence 43332 223445555
No 270
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.29 E-value=0.00037 Score=72.97 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=36.2
Q ss_pred CCcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCC-eEEEE
Q psy15549 380 PYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGK-VLIAS 430 (621)
Q Consensus 380 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~ 430 (621)
.++.++.++.|+.++.||..+++.+..+..+......-+.|..+|+ |+++.
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 3577888889999999999999999888653322222366667887 44443
No 271
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.26 E-value=0.00028 Score=64.52 Aligned_cols=214 Identities=10% Similarity=0.120 Sum_probs=125.4
Q ss_pred eeecCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEECCCCcEEEEecc-CCcceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy15549 186 KILRGHLEDVYDISWSPTSTHLI-SGSVDNTAIMWDVHKGKNLGILTE-HKKFVQGVAWDPKNQYVATLSSDRSLRTYSI 263 (621)
Q Consensus 186 ~~~~~~~~~v~~i~~spd~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~ 263 (621)
+.+.+-...+..++|+|++..|+ +...++.|...|+. ++.+..+.- .......+++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 34566667899999999776555 57778899999997 887777632 2356788999998887776556788999988
Q ss_pred cCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceeeeeeeeecccC
Q psy15549 264 QSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLN 343 (621)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~ 343 (621)
.....+........+. .....+.....++|+|+++.|+++. ......+|........
T Consensus 99 ~~~~~i~~~~~~~~~~--------------~~~~~N~g~EGLA~d~~~~~L~va~-----E~~p~~i~~~~g~~~~---- 155 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPL--------------QESPTNCGFEGLAYSRQDHTFWFFK-----EKNPIEVYKVNGLLSS---- 155 (255)
T ss_dssp CTTCCEEEEEEEECCC--------------SSCCCSSCCEEEEEETTTTEEEEEE-----ESSSEEEEEEESTTCS----
T ss_pred CCCCeeeeeeeecccc--------------ccccccCCcceEEEeCCCCEEEEEE-----CcCCceEEEEcccccC----
Confidence 6654322111111000 0112233468999999998888776 3333455554310000
Q ss_pred CCceec-------CCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCcEEEEeCCCCceeEEEec--cc---
Q psy15549 344 KPAVCL-------PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN--IH--- 411 (621)
Q Consensus 344 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~h--- 411 (621)
...... ........++.+.| ..+.+++.......+.++|... +.+..+.- +.
T Consensus 156 ~~l~i~~~~~~~~~~~~~d~S~l~~dp---------------~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l 219 (255)
T 3qqz_A 156 NELHISKDKALQRQFTLDDVSGAEFNQ---------------QKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGL 219 (255)
T ss_dssp SCCEEEECHHHHHTCCSSCCCEEEEET---------------TTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGC
T ss_pred CceeeecchhhccccccCCceeEEEcC---------------CCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCc
Confidence 000000 00011123333333 1334555555677888998664 44444422 11
Q ss_pred ---ccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q psy15549 412 ---YTKLTDITWSSDGKVLIASSTDGYCSIIS 440 (621)
Q Consensus 412 ---~~~v~~~~~spdg~~l~s~s~dg~i~iw~ 440 (621)
-..--.|+|.++|+..++ +..+.++.|.
T Consensus 220 ~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 220 SHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp SSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred ccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 125689999999985555 6666555554
No 272
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.26 E-value=4.5e-05 Score=81.70 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=76.1
Q ss_pred EEEECC-CCCEEEEEeCCC-----------cEEEEEccCCCCCCCCCCCCcccccccccceeeeeee-cCCCCCeEEEEE
Q psy15549 134 VVRFSP-NGELLASGDDES-----------TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL-RGHLEDVYDISW 200 (621)
Q Consensus 134 ~i~~sp-~g~~l~s~s~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~ 200 (621)
++++.+ ++++++.|+.+. .+.+||..+++-.. ...+ ..+.....++++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~-------------------~~~~~~~~~~~~~~~~~ 250 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD-------------------RTVTVTKHDMFCPGISM 250 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC-------------------CEEEECSCCCSSCEEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe-------------------CcccCCCCCCccccccC
Confidence 566777 888888887543 57889988776321 1122 223333446778
Q ss_pred CCCCCEEEEEeC-CCeEEEEECCCCcEEEEeccCCc-ceEEEEEcCCCCEEEEEe-CC-----CcEEEEEccCcee
Q psy15549 201 SPTSTHLISGSV-DNTAIMWDVHKGKNLGILTEHKK-FVQGVAWDPKNQYVATLS-SD-----RSLRTYSIQSKKV 268 (621)
Q Consensus 201 spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~s~~-~d-----g~i~iwd~~~~~~ 268 (621)
..+++++++|+. +..+.+||..+.+-...-..+.. .-.+++..++++.++.|+ .+ ..+.+||..+.+-
T Consensus 251 ~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 251 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred CCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 889999999985 46899999987654332211111 123456667899999988 34 4699999987664
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.21 E-value=0.0016 Score=64.72 Aligned_cols=177 Identities=10% Similarity=0.028 Sum_probs=104.9
Q ss_pred CEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCCCc
Q psy15549 94 ELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASG-DDESTIIVWKQKTDQDLPEFPSSNL 172 (621)
Q Consensus 94 ~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~ 172 (621)
.+|+.+....|+..++..... . .+......+..++|++.+..|+.+ ...+.|+.+++.........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~-----~---~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~----- 150 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEY-----T---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY----- 150 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSC-----E---EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC-----
T ss_pred ceeEEeccceeEEEccCCcce-----e---EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc-----
Confidence 466677777787777765421 1 122234568899999866655554 45678988888653210000
Q ss_pred ccccccccceeeeeeecCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEE
Q psy15549 173 DEENVNKEHWIVTKILRGHLEDVYDISWSPTST-HLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVAT 251 (621)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 251 (621)
.............+++.+.+. ++++-...+.|.+.++........+.........++++|.+.+|+.
T Consensus 151 ------------~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~ 218 (400)
T 3p5b_L 151 ------------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW 218 (400)
T ss_dssp ------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEE
T ss_pred ------------eEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEE
Confidence 122233445678899987444 4445455789999998765544444444456789999997777766
Q ss_pred EeC--CCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecc
Q psy15549 252 LSS--DRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPS 318 (621)
Q Consensus 252 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s 318 (621)
... .+.|...++........+. . .-.....+++++++..|+.+.
T Consensus 219 td~~~~~~I~~~~~dG~~~~~~~~-~----------------------~l~~P~glavd~~~~~lY~aD 264 (400)
T 3p5b_L 219 TDWGTPAKIKKGGLNGVDIYSLVT-E----------------------NIQWPNGITLDLLSGRLYWVD 264 (400)
T ss_dssp EECSSSCCEEEEETTSCSCEEEEC-S----------------------SCSCEEEEEEETTTTEEEEEE
T ss_pred EeCCCCCEEEEEeCCCCccEEEEE-C----------------------CCCceEEEEEEeCCCEEEEEE
Confidence 553 3678888875432221111 0 011236788888877776654
No 274
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.21 E-value=0.0096 Score=62.76 Aligned_cols=201 Identities=9% Similarity=0.007 Sum_probs=117.7
Q ss_pred CeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCC
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 94 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 94 (621)
...+|+|++.+. ..+++-..++.|. .+++....... .+.........+++.+.+.
T Consensus 38 ~~~~l~~d~~~~----~lywtD~~~~~I~--------------r~~~~g~~~~~-------v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 38 EASALDFDVTDN----RIYWTDISLKTIS--------------RAFMNGSALEH-------VVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp CEEEEEEETTTT----EEEEEETTTTEEE--------------EEETTSCSCEE-------EECSSCSCCCEEEEETTTT
T ss_pred ceEEEEEECCCC----EEEEEECCCCeEE--------------EEECCCCCcEE-------EEeCCCCCcceEEEEeCCC
Confidence 466778887554 2444555566666 55554322111 0111224567888988766
Q ss_pred EEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe--CCCcEEEEEccCCCCCCCCCCC
Q psy15549 95 LLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD--DESTIIVWKQKTDQDLPEFPSS 170 (621)
Q Consensus 95 ~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~ 170 (621)
.|..+. .+.|.+.++..... ..+ +...-.....|++.|...+|+.+. ..+.|...+++....
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~~-----~~l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------- 158 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQHR-----QVL--VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------- 158 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTTC-----EEE--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-------
T ss_pred EEEEEECCCCEEEEEecCCCcE-----EEE--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-------
Confidence 666555 45566666654311 111 112234578999998655555554 256777777765542
Q ss_pred CcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEE
Q psy15549 171 NLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSV-DNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYV 249 (621)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 249 (621)
..+...-.....|++++++..|+.+.. .+.|..+|+..... ..+........++++.. + .|
T Consensus 159 ---------------~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~-~l 220 (628)
T 4a0p_A 159 ---------------TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-D-YI 220 (628)
T ss_dssp ---------------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-T-EE
T ss_pred ---------------EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-C-EE
Confidence 122234456789999998777776654 57899999865443 33333334456778764 3 44
Q ss_pred EEEe-CCCcEEEEEccCceeeeec
Q psy15549 250 ATLS-SDRSLRTYSIQSKKVISRA 272 (621)
Q Consensus 250 ~s~~-~dg~i~iwd~~~~~~~~~~ 272 (621)
+.+. ..+.|...|..+++....+
T Consensus 221 y~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 221 YWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEecCCCCEEEEEECCCCCceEEE
Confidence 4444 4788998997777654444
No 275
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.20 E-value=0.00015 Score=65.37 Aligned_cols=188 Identities=11% Similarity=0.065 Sum_probs=113.6
Q ss_pred cCCC--CeEEEeccccccCCcceEEEEecCC--ceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEE
Q psy15549 11 HNRD--PVLSVDIQLKQEKDNCYRIVTGGAD--SHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNV 86 (621)
Q Consensus 11 ~h~~--~v~~l~~spd~~~~~~~~l~tg~~d--g~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~ 86 (621)
.|.. -...+.|++ +. ++.+.+.+ ..|+ .+|+.+++.... . .+. .....
T Consensus 16 phd~~~ftqGL~~~~-~~-----LyestG~~g~S~v~--------------~vD~~tgkv~~~-~----~l~---~~~fg 67 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GH-----LYESTGETGRSSVR--------------KVDLETGRILQR-A----EVP---PPYFG 67 (243)
T ss_dssp ECCTTCCEEEEEEET-TE-----EEEEECCTTSCEEE--------------EEETTTCCEEEE-E----ECC---TTCCE
T ss_pred CCCCccccccEEEEC-CE-----EEEECCCCCCceEE--------------EEECCCCCEEEE-E----eCC---CCcce
Confidence 4543 356899987 43 66666654 4888 666665544322 0 111 12222
Q ss_pred EEEccCCCEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q psy15549 87 VRFSPNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDL 164 (621)
Q Consensus 87 l~~spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~ 164 (621)
.....++..|.... ++.+.+||..+. +.+.++...... +.++ ++++.|+.+..++.|.++|..+.+.+
T Consensus 68 eGi~~~~~~ly~ltw~~~~v~v~D~~tl-------~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~ 137 (243)
T 3mbr_X 68 AGIVAWRDRLIQLTWRNHEGFVYDLATL-------TPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQV 137 (243)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEETTTT-------EEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEE
T ss_pred eEEEEeCCEEEEEEeeCCEEEEEECCcC-------cEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEE
Confidence 22223345555544 788899998876 445554433222 3444 46676766667889999999988754
Q ss_pred CCCCCCCcccccccccceeeeeeecCC-CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC----------
Q psy15549 165 PEFPSSNLDEENVNKEHWIVTKILRGH-LEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEH---------- 233 (621)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---------- 233 (621)
..+. ....+. -..++.+.|. +|+.++..-.+..|.+.|..+++.+..+...
T Consensus 138 ~~I~-----------------V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~ 199 (243)
T 3mbr_X 138 GSIK-----------------VTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALT 199 (243)
T ss_dssp EEEE-----------------CEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCC
T ss_pred EEEE-----------------EccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccccc
Confidence 3321 000111 1345667765 6766655556889999999999998876421
Q ss_pred ---CcceEEEEEcCCCCEEEEEeC
Q psy15549 234 ---KKFVQGVAWDPKNQYVATLSS 254 (621)
Q Consensus 234 ---~~~v~~l~~sp~~~~l~s~~~ 254 (621)
..-...++++|+++.|++.+.
T Consensus 200 ~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 200 DSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp CTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCcCCceEEEEEcCCCCEEEEECC
Confidence 134679999998887776664
No 276
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.19 E-value=0.00015 Score=78.94 Aligned_cols=198 Identities=11% Similarity=0.088 Sum_probs=105.5
Q ss_pred CeEEEecc-ccccCCcceEEEEecC-C----ceEEeeeccCccccccceeEEeccc-cccccceeeccccccccCcEEEE
Q psy15549 15 PVLSVDIQ-LKQEKDNCYRIVTGGA-D----SHVFDYLLKIPHRLKTGKIWYLTER-ESGIANVEFASDLSRHQKAVNVV 87 (621)
Q Consensus 15 ~v~~l~~s-pd~~~~~~~~l~tg~~-d----g~v~~~d~~~~~~~~~~~iw~~~~~-~~~~~~~~~~~~~~~h~~~V~~l 87 (621)
.+...+|| |||+ +||.+.. + ..|+ ++|+.++ +.... .+. .....+
T Consensus 175 ~~~~~~~S~PDG~-----~lAy~~~~~G~~~~~l~--------------v~dl~~g~~~l~~------~~~---~~~~~~ 226 (751)
T 2xe4_A 175 DVMEVKPAPPEHD-----LVAFSVDMSGNEVYTIE--------------FKRISDPSQTIAD------KVS---GTNGEI 226 (751)
T ss_dssp EEEEEEECTTTTC-----EEEEEEESSSSSCEEEE--------------EEETTCTTCCCCC------CEE---EECSCC
T ss_pred EEeeeEecCCCCC-----EEEEEEeCCCCceEEEE--------------EEECCCCCEeCCc------ccc---CceeeE
Confidence 57889999 9998 7775432 2 2466 8888776 42111 111 123468
Q ss_pred EEccCCCEEEEEc-CC-----ceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeC---CCcEEEEEc
Q psy15549 88 RFSPNGELLASGD-DV-----GKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDD---ESTIIVWKQ 158 (621)
Q Consensus 88 ~~spdg~~las~~-d~-----~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~---dg~i~vwd~ 158 (621)
+|+|||+.|+... +. .|.++++.++... . ..+... ........+.|+|||++|+..+. ...|.++|+
T Consensus 227 ~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~--~-~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 227 VWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSE--D-VCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp EECSSTTEEEEEEECTTCCEEEEEEEETTSCGGG--C-EEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEES
T ss_pred EEecCCCEEEEEEECCCCCCCEEEEEECCCCchh--c-EEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 8999999888766 32 2444444332110 0 111111 22234668899999998887653 346888888
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCC----CeEEEEECCCCcEEEE-eccC
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVD----NTAIMWDVHKGKNLGI-LTEH 233 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~d----g~i~vwd~~~~~~~~~-~~~~ 233 (621)
.++..... +.............+.|+..+.+++....+ ..|..+++.++..... +..+
T Consensus 303 ~~~~~~~~-----------------~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~ 365 (751)
T 2xe4_A 303 RKGNAHNT-----------------LEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH 365 (751)
T ss_dssp SSCTTCCC-----------------EEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC
T ss_pred CCCCCCce-----------------eEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC
Confidence 76521100 001122334455666665444444444433 3677778765322122 2223
Q ss_pred Cc--ceEEEEEcCCCCE-EEEEeCCCcEE--EEEc
Q psy15549 234 KK--FVQGVAWDPKNQY-VATLSSDRSLR--TYSI 263 (621)
Q Consensus 234 ~~--~v~~l~~sp~~~~-l~s~~~dg~i~--iwd~ 263 (621)
.. .+..+.+. +.. +++...++..+ ++++
T Consensus 366 ~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 366 SEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp CSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred CCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence 33 34555554 444 45566677544 4554
No 277
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.16 E-value=0.0039 Score=65.68 Aligned_cols=161 Identities=9% Similarity=-0.039 Sum_probs=93.7
Q ss_pred CcEEEEEEccCCCEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeC--CCcEEEEE
Q psy15549 82 KAVNVVRFSPNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDD--ESTIIVWK 157 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~--dg~i~vwd 157 (621)
.....+++.+.+..|..+. .+.|.+.++..... . ..+...-.....|++.|.+.+|+.+.. .+.|...+
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-----~--~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~ 156 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-----K--VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 156 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----E--EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-----E--EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEE
Confidence 5688999999766666654 56677777764311 1 111122345678999997655555542 45676666
Q ss_pred ccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCcEEEEeccCCcc
Q psy15549 158 QKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSV-DNTAIMWDVHKGKNLGILTEHKKF 236 (621)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~ 236 (621)
++..... ......-.....|++++++..|+.+.. .+.|..+|+...............
T Consensus 157 ~dG~~~~---------------------~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~ 215 (619)
T 3s94_A 157 MDGSSRF---------------------IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPH 215 (619)
T ss_dssp TTSCSCE---------------------EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------
T ss_pred CCCCceE---------------------EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCC
Confidence 6544321 112223456789999997777766654 578888888644332222212223
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEEccCceeeeec
Q psy15549 237 VQGVAWDPKNQYVATLS-SDRSLRTYSIQSKKVISRA 272 (621)
Q Consensus 237 v~~l~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 272 (621)
..++++..+ .|+.+. ..+.|...|..+++....+
T Consensus 216 P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 216 PFALTLFED--ILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred ceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEE
Confidence 346777654 455444 4678999998887655444
No 278
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=0.00027 Score=71.05 Aligned_cols=153 Identities=12% Similarity=0.109 Sum_probs=92.5
Q ss_pred CeEEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q psy15549 131 AVNVVRFSP-NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLIS 209 (621)
Q Consensus 131 ~V~~i~~sp-~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s 209 (621)
....++|+| ++..|+.+...+.|+.+|+..+.. ..+.........++|++++++|++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v----------------------~~~~~~~~~P~~ia~d~~G~~lyv 195 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV----------------------STVYSGLSKVRTICWTHEADSMII 195 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE----------------------EEEECCCSCEEEEEECTTSSEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE----------------------EEEecCCCCcceEEEeCCCCEEEE
Confidence 456889998 455666666557888999876542 222234556889999999996666
Q ss_pred EeCC-C----eEEEEECCCCcEE--EEeccCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCC
Q psy15549 210 GSVD-N----TAIMWDVHKGKNL--GILTEHKKFVQGVAWDP-KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDS 281 (621)
Q Consensus 210 ~~~d-g----~i~vwd~~~~~~~--~~~~~~~~~v~~l~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 281 (621)
+... + .+.+++. .+... ..+.. ......++++| ++.++++-..++.|..|+...+.........
T Consensus 196 ad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~------ 267 (430)
T 3tc9_A 196 TNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ------ 267 (430)
T ss_dssp EECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS------
T ss_pred EeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC------
Confidence 6542 1 3444443 33221 22221 23356788999 6666665556788999998766542211100
Q ss_pred ccccccccccccccCCcccceeeeeecCCCCeEEeccccccCCCCCCcceee
Q psy15549 282 SHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISV 333 (621)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~~~d~~i~~~~~ 333 (621)
.......++|+|+|++|+++.. ....+..++.
T Consensus 268 ----------------~~~~P~gia~~pdG~~lyv~d~----~~~~I~~~~~ 299 (430)
T 3tc9_A 268 ----------------DSGWEFHIQFHPSGNYAYIVVV----NQHYILRSDY 299 (430)
T ss_dssp ----------------SSSCCEEEEECTTSSEEEEEET----TTTEEEEEEE
T ss_pred ----------------CCCcceeEEEcCCCCEEEEEEC----CCCEEEEEeC
Confidence 0112368999999996666542 3445555543
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.14 E-value=0.0014 Score=62.75 Aligned_cols=146 Identities=12% Similarity=0.057 Sum_probs=87.4
Q ss_pred CEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEE-EEEeCCCcEEEEEccCCCCCCCCCCCCc
Q psy15549 94 ELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELL-ASGDDESTIIVWKQKTDQDLPEFPSSNL 172 (621)
Q Consensus 94 ~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 172 (621)
.+|+.+....|+.+++...... ...+......+.+++|.+.+..| .+-...+.|..+++.......
T Consensus 5 p~ll~~~~~~I~~i~l~~~~~~------~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~------- 71 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGKEN------ATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------- 71 (318)
T ss_dssp CEEEEECEEEEEEEETTCTTSC------CEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-------
T ss_pred cEEEEEccCeEEEEECCCCceE------EEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-------
Confidence 3566666677888887654211 11111122356789999855544 444566789999887653211
Q ss_pred ccccccccceeeeeeecCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEE
Q psy15549 173 DEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHL-ISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVAT 251 (621)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 251 (621)
......-.....+++.+.+..| ++-...+.|.++++........+.........++++|.+.+|+.
T Consensus 72 -------------~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~ 138 (318)
T 3sov_A 72 -------------NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW 138 (318)
T ss_dssp -------------EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEE
T ss_pred -------------EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEE
Confidence 1111222345678888754444 45455789999998654433333344456789999997777666
Q ss_pred EeC--CCcEEEEEccC
Q psy15549 252 LSS--DRSLRTYSIQS 265 (621)
Q Consensus 252 ~~~--dg~i~iwd~~~ 265 (621)
+.. .+.|..+++..
T Consensus 139 td~~~~~~I~r~~~dG 154 (318)
T 3sov_A 139 TDWGEVPKIERAGMDG 154 (318)
T ss_dssp EECSSSCEEEEEETTS
T ss_pred EecCCCCEEEEEEcCC
Confidence 653 46777777753
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.08 E-value=0.0021 Score=62.57 Aligned_cols=162 Identities=9% Similarity=-0.060 Sum_probs=96.4
Q ss_pred CcEEEEEEccCCCEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe-CC-CcEEEEE
Q psy15549 82 KAVNVVRFSPNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-DE-STIIVWK 157 (621)
Q Consensus 82 ~~V~~l~~spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s-~d-g~i~vwd 157 (621)
.....+++.+.+..|..+. .+.|.+.+..... ....+...-.....+++.|.+..|+.+. .. +.|..++
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 3457889988665555443 5667777765431 1111222334578999999665555443 44 6788888
Q ss_pred ccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCcEEEEeccCCcc
Q psy15549 158 QKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSV-DNTAIMWDVHKGKNLGILTEHKKF 236 (621)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~ 236 (621)
++..... ......-.....++++|++..|+.+.. .+.|..+|+........+......
T Consensus 189 ~dG~~~~---------------------~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~ 247 (349)
T 3v64_C 189 MDGSGRR---------------------IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH 247 (349)
T ss_dssp TTSCSCE---------------------ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSS
T ss_pred CCCCCcE---------------------EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCC
Confidence 7654321 111223345789999987777666654 578999998654333333333445
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeec
Q psy15549 237 VQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRA 272 (621)
Q Consensus 237 v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 272 (621)
...+++. .+..+++-...+.|..++..+++....+
T Consensus 248 P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 248 PFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred ceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 6677773 3444444445677888886666654444
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.07 E-value=0.00088 Score=67.31 Aligned_cols=143 Identities=11% Similarity=0.082 Sum_probs=83.5
Q ss_pred CeEEEEECCC--CCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q psy15549 131 AVNVVRFSPN--GELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLI 208 (621)
Q Consensus 131 ~V~~i~~sp~--g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~ 208 (621)
....++|+|+ ...|+.+...+.|+.++..++.. ..+.........++|+++|+ |+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v----------------------~~~~~~~~~P~giavd~dG~-ly 196 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV----------------------DIKTTNIGQCADVNFTLNGD-MV 196 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE----------------------EEECCCCSCEEEEEECTTCC-EE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEE----------------------EEeecCCCCccEEEECCCCC-EE
Confidence 4568999984 44555555448899999876652 22333455689999999999 44
Q ss_pred EEeCCC-----eEEEEECCCCcE-EEEeccCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEccCceeeeecccCCCCCCC
Q psy15549 209 SGSVDN-----TAIMWDVHKGKN-LGILTEHKKFVQGVAWDP-KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDS 281 (621)
Q Consensus 209 s~~~dg-----~i~vwd~~~~~~-~~~~~~~~~~v~~l~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 281 (621)
.+...+ .+..++...+.. ...+. .......++++| +|.++++-..++.|+.+|..++.....+....
T Consensus 197 Vad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~----- 270 (433)
T 4hw6_A 197 VVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD----- 270 (433)
T ss_dssp EEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-----
T ss_pred EEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-----
Confidence 444321 233333322211 01111 223356788999 66655555567889999987666522221100
Q ss_pred ccccccccccccccCCcccceeeeeecCCCCeEEecc
Q psy15549 282 SHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPS 318 (621)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s 318 (621)
. ...-..++|+|+|++|+++.
T Consensus 271 ---------------~-~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 271 ---------------T-KGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp ---------------C-CSSCEEEEECTTSSEEEEEE
T ss_pred ---------------C-CCCcccEEEeCCCCEEEEEe
Confidence 0 01113699999999666654
No 282
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.01 E-value=0.0015 Score=64.74 Aligned_cols=161 Identities=9% Similarity=-0.063 Sum_probs=95.5
Q ss_pred cEEEEEEccCCCEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe-CC-CcEEEEEc
Q psy15549 83 AVNVVRFSPNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-DE-STIIVWKQ 158 (621)
Q Consensus 83 ~V~~l~~spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s-~d-g~i~vwd~ 158 (621)
....+++.+.+..|..+. .+.|.+.++.... ....+...-.....+++.|.+..|+.+. .. +.|..+++
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 456788888666555544 4555555554321 1111222334678999998766655544 33 67888887
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCcEEEEeccCCcce
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSV-DNTAIMWDVHKGKNLGILTEHKKFV 237 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v 237 (621)
+..... ......-.....|+|+|++..|+.+.. .+.|..+|+........+.......
T Consensus 233 dG~~~~---------------------~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P 291 (386)
T 3v65_B 233 DGSGRR---------------------IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHP 291 (386)
T ss_dssp TSCSCE---------------------EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSE
T ss_pred CCCCcE---------------------EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCc
Confidence 654321 112223345789999987766666554 5789999986544333333334456
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeec
Q psy15549 238 QGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRA 272 (621)
Q Consensus 238 ~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 272 (621)
..+++. .+..+++-...+.|..++..+++....+
T Consensus 292 ~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 292 FAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 778883 3444445555678888886676655544
No 283
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.00 E-value=0.0035 Score=60.38 Aligned_cols=156 Identities=13% Similarity=0.145 Sum_probs=89.6
Q ss_pred cCcEEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccC
Q psy15549 81 QKAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKT 160 (621)
Q Consensus 81 ~~~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~ 160 (621)
.+.+..+.+.+++..++++.++. ||....++.. +..+ ...+...+..+.+.+++.+++.+...+..+-+|- .
T Consensus 121 ~~~~~~i~~~~~~~~~~~~~~g~--v~~S~DgG~t---W~~~--~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-g 192 (327)
T 2xbg_A 121 PGSPRLIKALGNGSAEMITNVGA--IYRTKDSGKN---WQAL--VQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-G 192 (327)
T ss_dssp SSCEEEEEEEETTEEEEEETTCC--EEEESSTTSS---EEEE--ECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-T
T ss_pred CCCeEEEEEECCCCEEEEeCCcc--EEEEcCCCCC---CEEe--ecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-C
Confidence 34577888888888887776554 4444443321 1211 2234557889999999888776654333333331 1
Q ss_pred CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEec-c---CCcc
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILT-E---HKKF 236 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~---~~~~ 236 (621)
+.. |... .......+..+.+.+++.+++ ++.+|.+++.+...++.-..+. . +...
T Consensus 193 G~t------------------W~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~ 251 (327)
T 2xbg_A 193 QTA------------------WEPH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVG 251 (327)
T ss_dssp CSS------------------CEEE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSC
T ss_pred CCc------------------eeEC--CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcc
Confidence 211 2111 123456788999999887654 4567887776533233322222 1 2235
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEccCce
Q psy15549 237 VQGVAWDPKNQYVATLSSDRSLRTYSIQSKK 267 (621)
Q Consensus 237 v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~ 267 (621)
+.++.+.+++..++++ .+|.| .+....++
T Consensus 252 ~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQ 280 (327)
T ss_dssp EEEEEESSSSCEEEEE-STTCE-EEESSTTS
T ss_pred eEEEEecCCCEEEEEe-CCCeE-EEeCCCCc
Confidence 8889999887766654 56766 34444443
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=0.0019 Score=64.83 Aligned_cols=155 Identities=10% Similarity=0.099 Sum_probs=89.1
Q ss_pred CeEEEeccc-cccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCC
Q psy15549 15 PVLSVDIQL-KQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNG 93 (621)
Q Consensus 15 ~v~~l~~sp-d~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 93 (621)
....|+++| ++. .|.++...+.|+ .+|+..+.... +.........++|+++|
T Consensus 138 ~P~~lavdp~~~g-----~Lyv~d~~~~I~--------------~id~~~~~v~~--------~~~~~~~P~~ia~d~~G 190 (430)
T 3tc9_A 138 GAVWLSFDPKNHN-----HLYLVGEQHPTR--------------LIDFEKEYVST--------VYSGLSKVRTICWTHEA 190 (430)
T ss_dssp CCCEEEEETTEEE-----EEEEEEBTEEEE--------------EEETTTTEEEE--------EECCCSCEEEEEECTTS
T ss_pred CCCEEEECCCCCC-----eEEEEeCCCcEE--------------EEECCCCEEEE--------EecCCCCcceEEEeCCC
Confidence 346788887 343 455544446666 66655432211 12234568899999999
Q ss_pred CEEEEEcC--Cc---eEEEEeccCccccccceecccccccCCCeEEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCC
Q psy15549 94 ELLASGDD--VG---KEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP-NGELLASGDDESTIIVWKQKTDQDLPEF 167 (621)
Q Consensus 94 ~~las~~d--~~---v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp-~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 167 (621)
++|..+.. +. ..+|....+.. .....+. .......++++| +|.++++-...+.|..++.......
T Consensus 191 ~~lyvad~~~~~~~~~v~~~~~~g~~-----~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--- 261 (430)
T 3tc9_A 191 DSMIITNDQNNNDRPNNYILTRESGF-----KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--- 261 (430)
T ss_dssp SEEEEEECCSCTTSEEEEEEEGGGTS-----CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE---
T ss_pred CEEEEEeCCCCcccceEEEEeCCCce-----eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE---
Confidence 96665542 21 23333333211 1001111 123456788999 6776666667788999998755321
Q ss_pred CCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECC
Q psy15549 168 PSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISG-SVDNTAIMWDVH 222 (621)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~-~~dg~i~vwd~~ 222 (621)
.....+.......++|+|+|++|+.+ ...+.|..++..
T Consensus 262 -----------------~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 262 -----------------PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp -----------------EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred -----------------EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 00111122446789999999955555 457889998765
No 285
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.91 E-value=0.01 Score=56.83 Aligned_cols=206 Identities=10% Similarity=-0.053 Sum_probs=116.7
Q ss_pred CCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccc---cccccceeeccccccccCcEEEEEEc
Q psy15549 14 DPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTER---ESGIANVEFASDLSRHQKAVNVVRFS 90 (621)
Q Consensus 14 ~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~---~~~~~~~~~~~~~~~h~~~V~~l~~s 90 (621)
....+++|++++. .++++-...+.|. .+++... ..... .+...-.....+++.
T Consensus 30 ~~p~g~~~d~~~~----~ly~~D~~~~~I~--------------~~~~~g~~~~~~~~~------~~~~~~~~p~glavd 85 (316)
T 1ijq_A 30 RNVVALDTEVASN----RIYWSDLSQRMIC--------------STQLDRAHGVSSYDT------VISRDIQAPDGLAVD 85 (316)
T ss_dssp SSEEEEEEETTTT----EEEEEETTTTEEE--------------EEEC--------CEE------EECSSCSCCCEEEEE
T ss_pred CceEEEEEEeCCC----EEEEEECCCCcEE--------------EEECCCCCCCcccEE------EEeCCCCCcCEEEEe
Confidence 3567888887654 2455555567777 5555431 11000 011222356788998
Q ss_pred cCCCEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeC-C-CcEEEEEccCCCCCCC
Q psy15549 91 PNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDD-E-STIIVWKQKTDQDLPE 166 (621)
Q Consensus 91 pdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~-d-g~i~vwd~~~~~~~~~ 166 (621)
+.+..|..+. .+.|.+++..... ....+...-.....+++.|.+..|+.+.. . +.|...+++.....
T Consensus 86 ~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~-- 156 (316)
T 1ijq_A 86 WIHSNIYWTDSVLGTVSVADTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-- 156 (316)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSS-------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE--
T ss_pred ecCCeEEEEECCCCEEEEEeCCCCc-------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE--
Confidence 7655554443 6678888765431 11111222346789999996665555543 2 67888877543210
Q ss_pred CCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCcEEEEec--cCCcceEEEEEc
Q psy15549 167 FPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSV-DNTAIMWDVHKGKNLGILT--EHKKFVQGVAWD 243 (621)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~s 243 (621)
......-.....+++++++..|+.+.. .+.|..+|+.......... ........+++.
T Consensus 157 -------------------~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~ 217 (316)
T 1ijq_A 157 -------------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 217 (316)
T ss_dssp -------------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE
T ss_pred -------------------EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE
Confidence 111223345789999998777766654 5789999986433222222 122345677775
Q ss_pred CCCCEEEEEeCCCcEEEEEccCceeeeec
Q psy15549 244 PKNQYVATLSSDRSLRTYSIQSKKVISRA 272 (621)
Q Consensus 244 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 272 (621)
.+..+++-...+.|..++..+++.+..+
T Consensus 218 -~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 218 -EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp -TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred -CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 3444445555678999988777655444
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.86 E-value=0.01 Score=64.00 Aligned_cols=148 Identities=10% Similarity=0.048 Sum_probs=87.8
Q ss_pred CEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEE-EEeCCCcEEEEEccCCCCCCCCCCCCc
Q psy15549 94 ELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLA-SGDDESTIIVWKQKTDQDLPEFPSSNL 172 (621)
Q Consensus 94 ~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~ 172 (621)
.+|+.+....|+..++.... ...+......+..++|.+....|+ +-...+.|+.+++........
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~--------~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~------ 461 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSE--------YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS------ 461 (791)
T ss_dssp CEEEEECBSSEEEECTTSCC--------CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------
T ss_pred cccccccccceeEeeccCCc--------ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc------
Confidence 35666666677776665431 111222345678999998555444 445567888888875321100
Q ss_pred ccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEE
Q psy15549 173 DEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISG-SVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVAT 251 (621)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 251 (621)
....+.........|++.+.++.|+.+ ...+.|.+.++........+.........|+++|.+.+|+.
T Consensus 462 -----------~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYw 530 (791)
T 3m0c_C 462 -----------YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW 530 (791)
T ss_dssp -----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE
T ss_pred -----------eeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEE
Confidence 012223234456788888777555544 45789999998755444444344456789999998777766
Q ss_pred EeC--CCcEEEEEccCc
Q psy15549 252 LSS--DRSLRTYSIQSK 266 (621)
Q Consensus 252 ~~~--dg~i~iwd~~~~ 266 (621)
... .+.|...++...
T Consensus 531 tD~g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 531 TDWGTPAKIKKGGLNGV 547 (791)
T ss_dssp EECSSSCEEEEEETTSC
T ss_pred ecCCCCCeEEEEecCCC
Confidence 653 267888887543
No 287
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.86 E-value=0.0088 Score=57.18 Aligned_cols=205 Identities=9% Similarity=-0.033 Sum_probs=117.1
Q ss_pred CeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCC
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGE 94 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 94 (621)
...+|+|++.+. .++++-...+.|. .+++........ .+...-.....+++.+.+.
T Consensus 36 ~~~~ld~d~~~~----~lyw~D~~~~~I~--------------r~~~~g~~~~~~------~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 36 DAAAVDFVFSHG----LIYWSDVSEEAIK--------------RTEFNKTESVQN------VVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEEGGGT----EEEEEETTTTEEE--------------EEETTSSSCCCE------EEEECCSCCCEEEEETTTT
T ss_pred ccEEEEEEeCCC----EEEEEECCCCcEE--------------EEEccCCCceEE------EEcCCCCCccEEEEEcCCC
Confidence 355777777543 2444445556666 555544321110 0112223567788987555
Q ss_pred EEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe--CCCcEEEEEccCCCCCCCCCCC
Q psy15549 95 LLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD--DESTIIVWKQKTDQDLPEFPSS 170 (621)
Q Consensus 95 ~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~ 170 (621)
.|..+. .+.|.+++...... . ..+.........+++.|.+.+|+.+. ..+.|...+++.....
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~-----~--~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~------ 158 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLR-----K--VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF------ 158 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSC-----E--EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE------
T ss_pred eEEEEECCCCEEEEEECCCCcE-----E--EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE------
Confidence 555443 56677777664311 1 11123334578999998766666554 3577888877643321
Q ss_pred CcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEE
Q psy15549 171 NLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSV-DNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYV 249 (621)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 249 (621)
......-.....+++++++..|+.+.. .+.|..+|+........+.........+++.. +..+
T Consensus 159 ---------------~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~ly 222 (318)
T 3sov_A 159 ---------------IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILY 222 (318)
T ss_dssp ---------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEE
T ss_pred ---------------EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEE
Confidence 111222345689999997777766654 67899999864333223332344556777753 3344
Q ss_pred EEEeCCCcEEEEEccCceeeeec
Q psy15549 250 ATLSSDRSLRTYSIQSKKVISRA 272 (621)
Q Consensus 250 ~s~~~dg~i~iwd~~~~~~~~~~ 272 (621)
.+-...+.|..++..+++....+
T Consensus 223 wtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 223 WTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEETTTTEEEEEETTTCCSCEEE
T ss_pred EEecCCCeEEEEECCCCCceEEE
Confidence 44445678999998777655444
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.84 E-value=0.0031 Score=63.32 Aligned_cols=164 Identities=15% Similarity=0.157 Sum_probs=91.6
Q ss_pred ccCcEEEEEEccCCCEEEEEcCC---ceEEEEeccCccccccceecccccccCCCeEEEEECC-CCCEEEEEeCCCcEEE
Q psy15549 80 HQKAVNVVRFSPNGELLASGDDV---GKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP-NGELLASGDDESTIIV 155 (621)
Q Consensus 80 h~~~V~~l~~spdg~~las~~d~---~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp-~g~~l~s~s~dg~i~v 155 (621)
.......++|+++|+++++...+ ...++.+...... .....+. .-.....++++| +|.++++-..++.|+.
T Consensus 180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~----~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~ 254 (433)
T 4hw6_A 180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF----TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISS 254 (433)
T ss_dssp CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT----CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEE
T ss_pred CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe----ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEE
Confidence 34568999999999955554322 1222222221110 1001111 123456688999 6766666666788999
Q ss_pred EEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECC--CCcE--EEEe
Q psy15549 156 WKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS-VDNTAIMWDVH--KGKN--LGIL 230 (621)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~-~dg~i~vwd~~--~~~~--~~~~ 230 (621)
++..++.....+ . ..+....-..++|+|++++|+.+. ..+.|+.+++. ++.. ...+
T Consensus 255 ~d~~~g~~~~~~------------------~-~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ 315 (433)
T 4hw6_A 255 YDPATGTLTEEE------------------V-MMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIV 315 (433)
T ss_dssp ECTTTCCEEEEE------------------E-ECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEE
T ss_pred EECCCCeEEEEE------------------e-ccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEE
Confidence 988765431000 0 111122235799999999665554 46789998865 2321 1122
Q ss_pred ccC---------------CcceEEEEE---------cCCCCEEEEEeCCCcEEEEEccCcee
Q psy15549 231 TEH---------------KKFVQGVAW---------DPKNQYVATLSSDRSLRTYSIQSKKV 268 (621)
Q Consensus 231 ~~~---------------~~~v~~l~~---------sp~~~~l~s~~~dg~i~iwd~~~~~~ 268 (621)
.+. -.....+++ .++|.++++-...+.|+.++. ++..
T Consensus 316 ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v 376 (433)
T 4hw6_A 316 CGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV 376 (433)
T ss_dssp EECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE
T ss_pred EecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE
Confidence 111 123567899 667776666566778999985 4543
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.83 E-value=0.00012 Score=78.46 Aligned_cols=118 Identities=9% Similarity=0.087 Sum_probs=67.2
Q ss_pred CCeEEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCC-CEE
Q psy15549 130 KAVNVVRFSPNGELLASGD-DESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTS-THL 207 (621)
Q Consensus 130 ~~V~~i~~sp~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~-~~l 207 (621)
..+..++|.+.+..|+.+. ..+.|+.+++......... ...+.........|++.+.+ +++
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~-----------------~~~i~~~~~~P~glavD~~~g~LY 468 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-----------------DTVISRDIQAPDGLAVDWIHSNIY 468 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCC-----------------CCBCCSCC--CCCEECCCSSSBCE
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcce-----------------EEEEeCCCCCcceEEEEeeCCcEE
Confidence 3466789998766666554 5578999998752100000 01111112234567887644 444
Q ss_pred EEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeC--CCcEEEEEcc
Q psy15549 208 ISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSS--DRSLRTYSIQ 264 (621)
Q Consensus 208 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~--dg~i~iwd~~ 264 (621)
++-...+.|.++++........+.........++++|.+.+|+.+.. .+.|..+++.
T Consensus 469 ~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d 527 (699)
T 1n7d_A 469 WTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 527 (699)
T ss_dssp ECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred EEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence 44445688999998755444333333345678899997666555443 2567666664
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.81 E-value=0.0024 Score=60.74 Aligned_cols=99 Identities=14% Similarity=0.268 Sum_probs=61.2
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC----CC---EEEEEeC
Q psy15549 140 NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT----ST---HLISGSV 212 (621)
Q Consensus 140 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd----~~---~l~s~~~ 212 (621)
...+++.....+-+.+||+ +++.+ ..+.. +.++.+..-|+ |+ ++++...
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l---------------------~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R 94 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKML---------------------HSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNR 94 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEE---------------------EEECC--SCEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEE---------------------EEccC--CCcccEEEecccccCCceEeEEEEeCC
Confidence 3446666677788999999 66643 23322 45666666552 22 2333333
Q ss_pred ---CCeEEEEECC--CCcEEEEecc------CC-cceEEEEE--cCC-CC-EEEEEeCCCcEEEEEc
Q psy15549 213 ---DNTAIMWDVH--KGKNLGILTE------HK-KFVQGVAW--DPK-NQ-YVATLSSDRSLRTYSI 263 (621)
Q Consensus 213 ---dg~i~vwd~~--~~~~~~~~~~------~~-~~v~~l~~--sp~-~~-~l~s~~~dg~i~iwd~ 263 (621)
+++|.+|++. ++. +..+.. .. ..+..+|+ +|. +. ++++...+|.+..|++
T Consensus 95 ~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l 160 (355)
T 3amr_A 95 SEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYEL 160 (355)
T ss_dssp STTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEE
T ss_pred CCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEE
Confidence 4789999773 333 444421 11 45667777 774 44 5777888899999988
No 291
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.79 E-value=0.021 Score=56.63 Aligned_cols=163 Identities=9% Similarity=-0.068 Sum_probs=97.8
Q ss_pred cCcEEEEEEccCCCEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe--CCCcEEEE
Q psy15549 81 QKAVNVVRFSPNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD--DESTIIVW 156 (621)
Q Consensus 81 ~~~V~~l~~spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s--~dg~i~vw 156 (621)
......+++.+.+..|..+. .+.|.+.++.... ....+...-.....|++.|.+.+|+... ..+.|...
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~ 230 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 230 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence 45678899998555555544 5566666665431 1111222334578999999666665554 23678888
Q ss_pred EccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCcEEEEecc--C
Q psy15549 157 KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSV-DNTAIMWDVHKGKNLGILTE--H 233 (621)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~--~ 233 (621)
+++..... ......-.....|++++++..|+.+.. .+.|..+|+........+.. .
T Consensus 231 ~~dG~~~~---------------------~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~ 289 (400)
T 3p5b_L 231 GLNGVDIY---------------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 289 (400)
T ss_dssp ETTSCSCE---------------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSST
T ss_pred eCCCCccE---------------------EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCC
Confidence 87654321 122233356789999998877777654 57899999865433222222 2
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeec
Q psy15549 234 KKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRA 272 (621)
Q Consensus 234 ~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 272 (621)
.....++++. .+..+++-...+.|..+|..+++.+..+
T Consensus 290 l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 290 LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp TSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 2344567763 2334444555678998997777665544
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.68 E-value=0.034 Score=56.04 Aligned_cols=161 Identities=11% Similarity=0.150 Sum_probs=88.9
Q ss_pred cEEEEEEcc-CCCEEEEEcC--CceEEEEeccCccccccceecccc-cccCCCeEEEEE-------CCCCCEEEEEeCCC
Q psy15549 83 AVNVVRFSP-NGELLASGDD--VGKEIWYLTERESGIANVEFASDL-SRHQKAVNVVRF-------SPNGELLASGDDES 151 (621)
Q Consensus 83 ~V~~l~~sp-dg~~las~~d--~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~i~~-------sp~g~~l~s~s~dg 151 (621)
....|+|+| +...|..+.+ +.|++.|...+. +..+... .........++| +++|++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-----EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-----EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 356899998 4555555543 446666655541 1111111 112335889999 99999666665443
Q ss_pred -------cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECC-
Q psy15549 152 -------TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT-STHLISGSVDNTAIMWDVH- 222 (621)
Q Consensus 152 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd-~~~l~s~~~dg~i~vwd~~- 222 (621)
.|.+++.......... ..+.....+ .....++++|+ +.++++-..++.|..+|+.
T Consensus 215 ~~~~~~~~V~~i~r~~~G~~~~~------------~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~ 278 (496)
T 3kya_A 215 GKGDESPSVYIIKRNADGTFDDR------------SDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLVD 278 (496)
T ss_dssp TTGGGEEEEEEEECCTTSCCSTT------------SCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHHH
T ss_pred CCcccCceEEEEecCCCCceeec------------ccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEeccc
Confidence 2555553331111000 000001111 23456788995 4555555667889999997
Q ss_pred ------CCcE-----------EEE-e-ccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEcc
Q psy15549 223 ------KGKN-----------LGI-L-TEHKKFVQGVAWDPKNQYVATLS-SDRSLRTYSIQ 264 (621)
Q Consensus 223 ------~~~~-----------~~~-~-~~~~~~v~~l~~sp~~~~l~s~~-~dg~i~iwd~~ 264 (621)
++.. ... + .........++|+|+|++|+.+. ....|+.++..
T Consensus 279 ~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 279 YFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 5543 111 1 12234467899999999765554 45778886653
No 293
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.68 E-value=0.03 Score=54.42 Aligned_cols=105 Identities=9% Similarity=0.061 Sum_probs=59.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC---CCE
Q psy15549 130 KAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT---STH 206 (621)
Q Consensus 130 ~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd---~~~ 206 (621)
.....++|.|+|+++ .+..+|.|++++. .+. ..+. -.............|+++|+ +..
T Consensus 29 ~~P~~ia~~pdG~l~-V~e~~g~I~~~d~-~G~--~~~~---------------~~~v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYL-VTERPGRLVLISP-SGK--KLVA---------------SFDVANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp SCEEEEEEEETTEEE-EEETTTEEEEECS-SCE--EEEE---------------ECCCCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCeEEEEcCCCeEE-EEeCCCEEEEEeC-CCc--eEee---------------ccceeecCCCceeeEEeCCCCCcCCE
Confidence 356789999999754 4456699998863 222 1110 00011122356889999997 445
Q ss_pred EEEEeC----C----CeEEEEECCCC--c-----EE-EEec-cCCcceEEEEEcCCCCEEEEEe
Q psy15549 207 LISGSV----D----NTAIMWDVHKG--K-----NL-GILT-EHKKFVQGVAWDPKNQYVATLS 253 (621)
Q Consensus 207 l~s~~~----d----g~i~vwd~~~~--~-----~~-~~~~-~~~~~v~~l~~sp~~~~l~s~~ 253 (621)
|+++.. + +.|..|+.... . .+ ..+. ........++|.|+|.++++.+
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 554433 2 56777876543 1 11 1122 1112346799999998666543
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.59 E-value=0.084 Score=55.59 Aligned_cols=174 Identities=10% Similarity=-0.023 Sum_probs=104.1
Q ss_pred CEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEE-EeCCCcEEEEEccCCCCCCCCCCCCc
Q psy15549 94 ELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLAS-GDDESTIIVWKQKTDQDLPEFPSSNL 172 (621)
Q Consensus 94 ~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~ 172 (621)
.+|+.+....|+..++..... .....+. .-..+..++|++.+..|+. -..++.|..+++......
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~-----~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~-------- 72 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNN-----NVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE-------- 72 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTC-----EEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--------
T ss_pred cEEEEEeCCcEEEEECCCCCc-----ceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--------
Confidence 466666777888888875421 1111121 2345789999996665554 446788998888754321
Q ss_pred ccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEE
Q psy15549 173 DEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISG-SVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVAT 251 (621)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 251 (621)
............+++.+.+..|+.+ ...+.|.+.++........+...-.....++++|...+|+.
T Consensus 73 -------------~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~ 139 (628)
T 4a0p_A 73 -------------HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYW 139 (628)
T ss_dssp -------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEE
T ss_pred -------------EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEE
Confidence 1222222346678887765555444 45688999998654433333334455789999997666666
Q ss_pred EeC--CCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecc
Q psy15549 252 LSS--DRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPS 318 (621)
Q Consensus 252 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s 318 (621)
... .+.|...++.......... .-.....+++++++..|+.+.
T Consensus 140 tD~g~~~~I~r~~~dG~~~~~l~~------------------------~~~~P~GlalD~~~~~LY~aD 184 (628)
T 4a0p_A 140 TEWGGKPKIDRAAMDGSERTTLVP------------------------NVGRANGLTIDYAKRRLYWTD 184 (628)
T ss_dssp EECSSSCEEEEEETTSCSCEEEEC------------------------SCSSEEEEEEETTTTEEEEEE
T ss_pred eCCCCCCEEEEEeCCCCceEEEEC------------------------CCCCcceEEEccccCEEEEEE
Confidence 553 4567777765433221111 011346889999877777654
No 295
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.58 E-value=0.036 Score=51.66 Aligned_cols=226 Identities=8% Similarity=0.073 Sum_probs=133.7
Q ss_pred EeccccccCCcceEEEEecCCceEEeeeccCccccc-------------------------cceeEEeccccccccceee
Q psy15549 19 VDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLK-------------------------TGKIWYLTERESGIANVEF 73 (621)
Q Consensus 19 l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~-------------------------~~~iw~~~~~~~~~~~~~~ 73 (621)
.-.+|..+ .||.-. ...+.+|++.+.++++ .+--|++.....+..-++.
T Consensus 72 AIMnP~~~-----ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 72 AIMNPASK-----VIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp EEECSSSS-----EEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEEC
T ss_pred eeeCCCcc-----EEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeec
Confidence 34577776 666655 6678888877654442 3334555442222222222
Q ss_pred ccccccccCcEEEEEEccCCCEEEEEc----C----CceEEEEeccCccccccceecccccccCCCeEEEEECCC---CC
Q psy15549 74 ASDLSRHQKAVNVVRFSPNGELLASGD----D----VGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN---GE 142 (621)
Q Consensus 74 ~~~~~~h~~~V~~l~~spdg~~las~~----d----~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~---g~ 142 (621)
...+. ...|..-..+++.++++..+ + |.+++|..+.+ ..+.+.+|......+.+.-+ .+
T Consensus 146 ~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--------~sQ~ieGhaa~F~~~~~~g~~~~~~ 215 (365)
T 2xzh_A 146 HSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--------VSQPIEGHAASFAQFKMEGNAEEST 215 (365)
T ss_dssp CGGGT--TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT--------EEEEECCSEEEEEEECCTTCSSCEE
T ss_pred chhcc--cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc--------ccceeeeeeeeeEEEecCCCCCCce
Confidence 22332 35677778899999887643 2 44688888763 45567788655433333211 12
Q ss_pred EEEEEeC---CCcEEEEEccCC-CCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q psy15549 143 LLASGDD---ESTIIVWKQKTD-QDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIM 218 (621)
Q Consensus 143 ~l~s~s~---dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~v 218 (621)
+|+.+.. .+.++|.++... .....++. +.-.+...-.....-..++..++.-..+..-+.-|.|++
T Consensus 216 lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~k----------k~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihl 285 (365)
T 2xzh_A 216 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK----------KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHL 285 (365)
T ss_dssp EEEEEEEETTEEEEEEEECSSCCTTCCCCCC----------EEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCCCCCCCccc----------ccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEE
Confidence 4444432 258999998654 12222210 000000111123445678888888888999999999999
Q ss_pred EECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeee
Q psy15549 219 WDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVIS 270 (621)
Q Consensus 219 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 270 (621)
||++++.++..-+--...|-.-+.+....=++.....|.|.--.+.....+.
T Consensus 286 yDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ivp 337 (365)
T 2xzh_A 286 YDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 337 (365)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHHH
T ss_pred EEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccEeh
Confidence 9999999998776556666555555444456666688887777776655443
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.53 E-value=0.01 Score=56.44 Aligned_cols=174 Identities=14% Similarity=0.178 Sum_probs=103.7
Q ss_pred CcEEEEEEcc----CCCE--EEEEc--C---CceEEEEeccCccccccceecccc--c-ccC-CCeEEEEE--CCC-CC-
Q psy15549 82 KAVNVVRFSP----NGEL--LASGD--D---VGKEIWYLTERESGIANVEFASDL--S-RHQ-KAVNVVRF--SPN-GE- 142 (621)
Q Consensus 82 ~~V~~l~~sp----dg~~--las~~--d---~~v~iw~~~~~~~~~~~~~~~~~~--~-~h~-~~V~~i~~--sp~-g~- 142 (621)
+.++.+..-| .|+. |+.++ + +.+.+|++...... +..+... . +.. ..+..+|+ +|. +.
T Consensus 68 g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~ 144 (355)
T 3amr_A 68 GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---LQSMTDPDHPIATAINEVYGFTLYHSQKTGKY 144 (355)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---EEECSCTTSCEECCCSSCCCEEEEECTTTCCE
T ss_pred CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---eeeccccccCcCCCCCCeeEEEEEecCCCCcE
Confidence 4566666555 2322 34333 3 56899988533221 1222111 0 111 45667777 774 44
Q ss_pred EEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC
Q psy15549 143 LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVH 222 (621)
Q Consensus 143 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~ 222 (621)
++++...+|.+..|++.....-. ......+.+. ..+.+..|...+...+|+.+-++.-|..|+.+
T Consensus 145 yafV~~k~G~~~q~~l~~~~~g~--------------~~~~lVR~f~-lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 145 YAMVTGKEGEFEQYELKADKNGY--------------ISGKKVRAFK-MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEEECSSSEEEEEEEEECTTSC--------------EEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred EEEEECCCCeEEEEEEEeCCCCc--------------ccceEEEEec-CCCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 67788889999999985421100 0011123333 24578899999988899999999778888865
Q ss_pred -----CCcEEEEec-cC-CcceEEEEE--cCCCC-EEEEEe-CCCcEEEEEcc-Cceeeeecc
Q psy15549 223 -----KGKNLGILT-EH-KKFVQGVAW--DPKNQ-YVATLS-SDRSLRTYSIQ-SKKVISRAC 273 (621)
Q Consensus 223 -----~~~~~~~~~-~~-~~~v~~l~~--sp~~~-~l~s~~-~dg~i~iwd~~-~~~~~~~~~ 273 (621)
+++.+..+. ++ ...+..|++ .++++ +|++.+ .++++.+||.. +.+.+..+.
T Consensus 210 p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 210 PDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp TTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred cCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 345555542 22 236788887 45566 676666 46799999996 566665554
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.52 E-value=0.0055 Score=57.70 Aligned_cols=177 Identities=10% Similarity=0.125 Sum_probs=105.6
Q ss_pred CCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCcEEEEeccC-------CcceEEEEE---cCCCCEEEEEeC----
Q psy15549 190 GHLEDVYDISWSPTSTHLISGS-VDNTAIMWDVHKGKNLGILTEH-------KKFVQGVAW---DPKNQYVATLSS---- 254 (621)
Q Consensus 190 ~~~~~v~~i~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~l~~---sp~~~~l~s~~~---- 254 (621)
.......+++|++....|..++ ..+.|..||...+......... ...+..+.| .|+++++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 3444456789988666666666 6899999999766443332221 113579999 688777775432
Q ss_pred ---------CCcEEEEEcc---CceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEecccccc
Q psy15549 255 ---------DRSLRTYSIQ---SKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLE 322 (621)
Q Consensus 255 ---------dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~s~~~~ 322 (621)
+..|..||+. +++.+......... +...+. ..........++..++|+..++.+.
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~--------~~~~~~--~g~~~~~~nDvavD~~GnaYVt~s~--- 156 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQ--------DEFEKK--AGKRPFGVVQSAQDRDGNSYVAFAL--- 156 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHH--------HHHHHH--HSSCCEEEEEEEECTTSCEEEEEEE---
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCcccc--------cccccc--ccccccCCceeEECCCCCEEEeCCC---
Confidence 5779999998 77665443211000 000000 0001123678999999998876551
Q ss_pred CCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEEcCCc-EEEEeCCCC
Q psy15549 323 NSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENN-ILLYDTQHA 401 (621)
Q Consensus 323 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~ 401 (621)
. ...|+-.+-||. +..|.+...
T Consensus 157 --~-------------------------------------------------------~~~I~rV~pdG~~~~~~~~~~~ 179 (334)
T 2p9w_A 157 --G-------------------------------------------------------MPAIARVSADGKTVSTFAWESG 179 (334)
T ss_dssp --S-------------------------------------------------------SCEEEEECTTSCCEEEEEECCC
T ss_pred --C-------------------------------------------------------CCeEEEEeCCCCEEeeeeecCC
Confidence 1 011222223332 455654332
Q ss_pred ceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEec
Q psy15549 402 SPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFG 442 (621)
Q Consensus 402 ~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~ 442 (621)
. .......+.|+++|+|..|++....|.|..+|+.
T Consensus 180 ~------~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 180 N------GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp C------SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred C------cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1 1122347799999999999988779999999987
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=0.026 Score=56.85 Aligned_cols=222 Identities=10% Similarity=0.065 Sum_probs=110.7
Q ss_pred CeEEEeccc-cccCCcceEEEEec-CCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEE---
Q psy15549 15 PVLSVDIQL-KQEKDNCYRIVTGG-ADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRF--- 89 (621)
Q Consensus 15 ~v~~l~~sp-d~~~~~~~~l~tg~-~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--- 89 (621)
.-..|+|+| +.. .|+++. ..+.|+ +.|+..+..... ...-.........++|
T Consensus 140 ~p~~la~dp~~~~-----~Lyv~~~~~~~i~--------------~ID~~~~~v~~l----~~~~~~~~~~p~~ia~~~~ 196 (496)
T 3kya_A 140 DNGRLAFDPLNKD-----HLYICYDGHKAIQ--------------LIDLKNRMLSSP----LNINTIPTNRIRSIAFNKK 196 (496)
T ss_dssp SEEEEEEETTEEE-----EEEEEEETEEEEE--------------EEETTTTEEEEE----ECCTTSSCSBEEEEEECCC
T ss_pred CCCEEEEccCCCC-----EEEEEECCCCeEE--------------EEECCCCEEEEE----EccCccccCCCcEEEEeec
Confidence 356889998 343 444443 345566 555554322111 0001112346899999
Q ss_pred ----ccCCCEEEEEcCCc------eEEEEeccCc-ccccc---ceecccccccCCCeEEEEECCC-CCEEEEEeCCCcEE
Q psy15549 90 ----SPNGELLASGDDVG------KEIWYLTERE-SGIAN---VEFASDLSRHQKAVNVVRFSPN-GELLASGDDESTII 154 (621)
Q Consensus 90 ----spdg~~las~~d~~------v~iw~~~~~~-~~~~~---~~~~~~~~~h~~~V~~i~~sp~-g~~l~s~s~dg~i~ 154 (621)
+++|.+|+++.+.. ..++.+.... ..... ...+..+ .....++++|+ +.++++-..++.|.
T Consensus 197 ~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~ 272 (496)
T 3kya_A 197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVF 272 (496)
T ss_dssp BTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEE
Confidence 99999777665322 2333332211 11100 0111111 23456788994 55555666788899
Q ss_pred EEEcc-------CCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECC--CC
Q psy15549 155 VWKQK-------TDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS-VDNTAIMWDVH--KG 224 (621)
Q Consensus 155 vwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~-~dg~i~vwd~~--~~ 224 (621)
.+|+. ++..-...... ... ....... .+.....+.|+|+|+|++|+.+. ..+.|+.++.. ++
T Consensus 273 r~d~~~~~~~~~tg~~~tp~~~~-----~~g--~~~~l~~-~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~ 344 (496)
T 3kya_A 273 RLDLVDYFKTIKNGGSWDPIVKN-----NPN--TFKQLFT-IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK 344 (496)
T ss_dssp EECHHHHHHHHHTTCCCCCBGGG-----CTT--TEEEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred EEecccccccccCceeecccccc-----ccc--ccceeEe-cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence 99997 44420000000 000 0000011 12234468999999999655554 56788886653 33
Q ss_pred cE--EEEeccC---C------------cceE-EEEEc-------CCCCEEEEEeCCCcEEEEEccCceeeeecc
Q psy15549 225 KN--LGILTEH---K------------KFVQ-GVAWD-------PKNQYVATLSSDRSLRTYSIQSKKVISRAC 273 (621)
Q Consensus 225 ~~--~~~~~~~---~------------~~v~-~l~~s-------p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 273 (621)
.. ...+.+. . .... .++.. +++.++++-.....|+.++ .++. +.++.
T Consensus 345 ~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~Tia 416 (496)
T 3kya_A 345 EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYA 416 (496)
T ss_dssp EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEE
T ss_pred eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEe
Confidence 21 0122111 0 1233 44554 4556555555678899998 3553 44443
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.51 E-value=0.027 Score=54.70 Aligned_cols=104 Identities=10% Similarity=0.154 Sum_probs=60.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC---CCEE
Q psy15549 131 AVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT---STHL 207 (621)
Q Consensus 131 ~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd---~~~l 207 (621)
....++|.|+|+++++ ..+|.|.+++ .+.. ..+ .-.............|+|+|+ +..|
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~---------------~~~~v~~~g~~~p~gia~~pdf~~~g~l 92 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STY---------------AELSVYHRGESGLLGLALHPRFPQEPYV 92 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEE---------------EECCCCCSTTCSEEEEEECTTTTTSCEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEe---------------ecceEeecCCCCceeEEECCCCCCCCEE
Confidence 4678999999985554 5669999988 3321 000 000011223456899999998 5555
Q ss_pred EEEeC-C-----CeEEEEECCCCc-----EE-EEec---cCCcceEEEEEcCCCCEEEEEe
Q psy15549 208 ISGSV-D-----NTAIMWDVHKGK-----NL-GILT---EHKKFVQGVAWDPKNQYVATLS 253 (621)
Q Consensus 208 ~s~~~-d-----g~i~vwd~~~~~-----~~-~~~~---~~~~~v~~l~~sp~~~~l~s~~ 253 (621)
+++.. . +.|..|+...+. .+ ..+. ........++|.|+|.+.++.+
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 55443 2 678888876431 11 1132 1112346899999997665543
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.49 E-value=0.039 Score=59.60 Aligned_cols=162 Identities=9% Similarity=-0.070 Sum_probs=97.7
Q ss_pred cCcEEEEEEccCCCEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe-C-CCcEEEE
Q psy15549 81 QKAVNVVRFSPNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-D-ESTIIVW 156 (621)
Q Consensus 81 ~~~V~~l~~spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s-~-dg~i~vw 156 (621)
......|++.+.+..|+.+. .+.|.+.++.... ....+...-.....|++.|.+.+|+.+. . .+.|.+.
T Consensus 470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~ 542 (791)
T 3m0c_C 470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 542 (791)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence 45667899998887666655 5567777766431 1111222334578999999766665554 2 2678888
Q ss_pred EccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCcEEEEecc--C
Q psy15549 157 KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSV-DNTAIMWDVHKGKNLGILTE--H 233 (621)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~--~ 233 (621)
++...... ......-.....|++.+.+..|+.+.. .+.|..+++........+.. .
T Consensus 543 ~~dG~~~~---------------------~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~ 601 (791)
T 3m0c_C 543 GLNGVDIY---------------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 601 (791)
T ss_dssp ETTSCCEE---------------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT
T ss_pred ecCCCceE---------------------EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCc
Confidence 87654321 222233456889999987777776654 56899999865443333322 1
Q ss_pred CcceEEEEEcCCCCEEEEEe-CCCcEEEEEccCceeeeec
Q psy15549 234 KKFVQGVAWDPKNQYVATLS-SDRSLRTYSIQSKKVISRA 272 (621)
Q Consensus 234 ~~~v~~l~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 272 (621)
-....+|++. +.+|+.+. ..+.|...+..+++.+..+
T Consensus 602 l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 602 LAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred cCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 2234466664 44555554 4567887887777554443
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.45 E-value=0.032 Score=54.18 Aligned_cols=108 Identities=7% Similarity=0.020 Sum_probs=56.7
Q ss_pred CeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccC--
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN-- 92 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-- 92 (621)
.-..|+|.|||+ ++++ ..+|.|. +++ .+.. ..+.-...+.........|+|+|+
T Consensus 32 ~P~~ia~~pdG~-----l~V~-e~~g~I~--------------~i~--~g~~--~~~~~~~v~~~g~~~p~gia~~pdf~ 87 (352)
T 2ism_A 32 VPWALAFLPDGG-----MLIA-ERPGRIR--------------LFR--EGRL--STYAELSVYHRGESGLLGLALHPRFP 87 (352)
T ss_dssp CEEEEEECTTSC-----EEEE-ETTTEEE--------------EEE--TTEE--EEEEECCCCCSTTCSEEEEEECTTTT
T ss_pred CceEEEEcCCCe-----EEEE-eCCCeEE--------------EEE--CCCc--cEeecceEeecCCCCceeEEECCCCC
Confidence 467999999996 5555 4458887 555 2211 000000111223456889999998
Q ss_pred -CCEEEEEc--C-----CceEEEEeccCccccccce-eccccc---ccCCCeEEEEECCCCCEEEEEe
Q psy15549 93 -GELLASGD--D-----VGKEIWYLTERESGIANVE-FASDLS---RHQKAVNVVRFSPNGELLASGD 148 (621)
Q Consensus 93 -g~~las~~--d-----~~v~iw~~~~~~~~~~~~~-~~~~~~---~h~~~V~~i~~sp~g~~l~s~s 148 (621)
+..|..+. . +.|..|+..... ....+ .+..+. +.......++|.|+|.++++.+
T Consensus 88 ~~g~lYv~~~~~~~~~~~~v~r~~~~~~~--~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 88 QEPYVYAYRTVAEGGLRNQVVRLRHLGER--GVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEEECSSC--EEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCCEEEEEEecCCCCCccEEEEEEeCCCC--cCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 55444433 2 456666665321 10001 111122 1112235899999997666643
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.42 E-value=0.037 Score=53.25 Aligned_cols=156 Identities=12% Similarity=0.156 Sum_probs=90.2
Q ss_pred cCcEEEEEEcc--CCC-EEEEEc----CCceEEEEeccCccccccceeccccccc-CCCeEEEEECCCCCEEEEEeC---
Q psy15549 81 QKAVNVVRFSP--NGE-LLASGD----DVGKEIWYLTERESGIANVEFASDLSRH-QKAVNVVRFSPNGELLASGDD--- 149 (621)
Q Consensus 81 ~~~V~~l~~sp--dg~-~las~~----d~~v~iw~~~~~~~~~~~~~~~~~~~~h-~~~V~~i~~sp~g~~l~s~s~--- 149 (621)
......+.+.+ +|. +|..+. +..+.+|++...... ...+..+.+. -...+.+.+.++|.+.++...
T Consensus 111 ~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~---~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ft 187 (355)
T 3sre_A 111 SFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS---LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFI 187 (355)
T ss_dssp GCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE---EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCS
T ss_pred ceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE---EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeC
Confidence 34566666655 454 344442 456889988765432 2333334332 235789999999987776541
Q ss_pred C------------CcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeE
Q psy15549 150 E------------STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS-VDNTA 216 (621)
Q Consensus 150 d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~-~dg~i 216 (621)
| ..=.||.+..++ . ..+...-...+.++|+||++.|+.+. ..+.|
T Consensus 188 d~~~~~~e~~~~~~~g~vyr~d~~~-~---------------------~~~~~~l~~pNGia~spDg~~lYvadt~~~~I 245 (355)
T 3sre_A 188 DPYLKSWEMHLGLAWSFVTYYSPND-V---------------------RVVAEGFDFANGINISPDGKYVYIAELLAHKI 245 (355)
T ss_dssp SHHHHHHHHHTTCCCEEEEEECTTC-C---------------------EEEEEEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred CcccccchhhccCCccEEEEEECCe-E---------------------EEeecCCcccCcceECCCCCEEEEEeCCCCeE
Confidence 1 122333333322 1 22222334568999999998877765 46899
Q ss_pred EEEECCC-CcE--EEEeccCCcceEEEEEcC-CCCEEEEEeCC-CcEEEEE
Q psy15549 217 IMWDVHK-GKN--LGILTEHKKFVQGVAWDP-KNQYVATLSSD-RSLRTYS 262 (621)
Q Consensus 217 ~vwd~~~-~~~--~~~~~~~~~~v~~l~~sp-~~~~l~s~~~d-g~i~iwd 262 (621)
..|++.. +.. ...+ ...+..-.+++.+ +|++.+++..+ +.|..|+
T Consensus 246 ~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 246 HVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred EEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 9999863 322 2233 2245567788888 58877766544 2344344
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.40 E-value=0.0013 Score=70.40 Aligned_cols=162 Identities=9% Similarity=-0.086 Sum_probs=90.3
Q ss_pred cEEEEEEccCCCEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeC--CCcEEEEEc
Q psy15549 83 AVNVVRFSPNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDD--ESTIIVWKQ 158 (621)
Q Consensus 83 ~V~~l~~spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~--dg~i~vwd~ 158 (621)
....|++.+.+..|+.+. .+.|.++++.... ....+.........+++.|.+.+|+.+.. .+.|.++++
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~ 526 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 526 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCc-------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence 355678886554444433 6677777765431 11111112234567889986655554432 267777776
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCcEEEEecc--CCc
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS-VDNTAIMWDVHKGKNLGILTE--HKK 235 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~--~~~ 235 (621)
...... ......-.....|+|+|++..|+.+. ..+.|.++++........+.. ...
T Consensus 527 dG~~~~---------------------~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~ 585 (699)
T 1n7d_A 527 NGVDIY---------------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 585 (699)
T ss_dssp SSCCCC---------------------EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCS
T ss_pred CCCCee---------------------EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCC
Confidence 543221 11112223456799999766555554 467899999864333222221 122
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeecc
Q psy15549 236 FVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRAC 273 (621)
Q Consensus 236 ~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 273 (621)
....|++..+ .++++....+.|..++..+++.+..+.
T Consensus 586 ~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 586 HPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp SCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 3345666543 334444456789999988888776653
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.40 E-value=0.11 Score=50.49 Aligned_cols=227 Identities=8% Similarity=0.061 Sum_probs=135.8
Q ss_pred EeccccccCCcceEEEEecCCceEEeeeccCcccc-------------------------ccceeEEeccccccccceee
Q psy15549 19 VDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRL-------------------------KTGKIWYLTERESGIANVEF 73 (621)
Q Consensus 19 l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~-------------------------~~~~iw~~~~~~~~~~~~~~ 73 (621)
.-.+|..+ .||.-. ...+.+||+.+.+.+ ..+--|++.....+..-++.
T Consensus 71 AIMnP~~~-----iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 71 AIMNPASK-----VIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp EEECSSSS-----CEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEEC
T ss_pred eeeCCCCc-----EEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheec
Confidence 34566665 565554 667888888654433 23334555432222221222
Q ss_pred ccccccccCcEEEEEEccCCCEEEEEc--------CCceEEEEeccCccccccceecccccccCCCeEEEEECCCC---C
Q psy15549 74 ASDLSRHQKAVNVVRFSPNGELLASGD--------DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNG---E 142 (621)
Q Consensus 74 ~~~~~~h~~~V~~l~~spdg~~las~~--------d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g---~ 142 (621)
...+. ...|..-..+++.++++..+ .|.+++|..+.. ..+.+.||......+.+.-+. +
T Consensus 145 ~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--------~sQ~ieGhaa~F~~~~~~g~~~~~~ 214 (494)
T 1bpo_A 145 HSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--------VSQPIEGHAASFAQFKMEGNAEEST 214 (494)
T ss_dssp CGGGT--TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--------CEEEECCSEEEEEEEECTTCSSEEE
T ss_pred chhcc--cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--------ccchheeeeeeeEEEecCCCCCCce
Confidence 22232 35677778899999987543 244688988874 355677887655444443211 2
Q ss_pred EEEEEeC---CCcEEEEEccCC-CCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q psy15549 143 LLASGDD---ESTIIVWKQKTD-QDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIM 218 (621)
Q Consensus 143 ~l~s~s~---dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~v 218 (621)
+|+.+.. .+.++|.++... .....++. ..-.+...-.....-..++..++.-..+..-+.-|.|++
T Consensus 215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k----------k~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~l 284 (494)
T 1bpo_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK----------KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHL 284 (494)
T ss_dssp EEEEEECSTTCCEEEEEECSCCCTTCCCCCC----------EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCccCCCCccc----------eeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEE
Confidence 4444443 278999998654 12112210 000000011123445678889998889999999999999
Q ss_pred EECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeee
Q psy15549 219 WDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISR 271 (621)
Q Consensus 219 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 271 (621)
||++++.++..-+--...|-.-+.+....=++.....|.|.--.+.....+..
T Consensus 285 yDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivpy 337 (494)
T 1bpo_A 285 YDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPY 337 (494)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHHH
T ss_pred EecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccchhh
Confidence 99999999987765566665555555555566677888877777766555443
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.40 E-value=0.086 Score=49.17 Aligned_cols=246 Identities=10% Similarity=0.116 Sum_probs=148.4
Q ss_pred EEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC
Q psy15549 87 VRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPE 166 (621)
Q Consensus 87 l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~ 166 (621)
.-.+|..+.||.-....++|++++.. ..+..+.- ...|.-=.|-.+. .|+-.+. ..|.-|++......
T Consensus 72 AIMnP~~~ViALrag~~LQiFnletK-------~klks~~~-~e~VvfWkWis~~-~L~lVT~-taVyHWs~~~~s~P-- 139 (365)
T 2xzh_A 72 AIMNPASKVIALKAGKTLQIFNIEMK-------SKMKAHTM-TDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQP-- 139 (365)
T ss_dssp EEECSSSSEEEEEETTEEEEEETTTT-------EEEEEEEC-SSCEEEEEECSSS-EEEEEES-SEEEEEESSTTCCC--
T ss_pred eeeCCCccEEEEecCCeEEEechHHh-------hhhcceec-CCccEEEEecCCC-eEEEEcC-CcEEEEcccCCCCC--
Confidence 34689999998877788999999986 33333322 3567777887544 4554443 47999999764321
Q ss_pred CCCCCcccccccccceeeeeeecCC----CCCeEEEEECCCCCEEEEEeC-------CCeEEEEECCCCcEEEEeccCCc
Q psy15549 167 FPSSNLDEENVNKEHWIVTKILRGH----LEDVYDISWSPTSTHLISGSV-------DNTAIMWDVHKGKNLGILTEHKK 235 (621)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~i~~spd~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~ 235 (621)
.+.+..| ...|..-..+++.++++..+- .|.+.+|..+.+ .-+.+.+|.+
T Consensus 140 ------------------~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa 200 (365)
T 2xzh_A 140 ------------------VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 200 (365)
T ss_dssp ------------------EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEE
T ss_pred ------------------ceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeee
Confidence 1233322 356777788889998776442 378899998654 4567778866
Q ss_pred ceEEEEEcCC---CCEEEEEeCC---CcEEEEEccCce-eeeecccCCCCCCCccccccccccccccCCcccceeeeeec
Q psy15549 236 FVQGVAWDPK---NQYVATLSSD---RSLRTYSIQSKK-VISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308 (621)
Q Consensus 236 ~v~~l~~sp~---~~~l~s~~~d---g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 308 (621)
....+.+.-+ ...|+.+... +.++|-++.... -.. ........+-|.
T Consensus 201 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~--------------------------~f~kk~vdi~fp 254 (365)
T 2xzh_A 201 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ--------------------------PFPKKAVDVFFP 254 (365)
T ss_dssp EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCC--------------------------CCCCEEEEECCC
T ss_pred eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCC--------------------------CcccccceeeCC
Confidence 5544333211 1234433332 466676663310 000 001112233444
Q ss_pred CCC--CeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEE
Q psy15549 309 PDG--QLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIA 386 (621)
Q Consensus 309 pdg--~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 386 (621)
|+. .+=+ ++.. +..++.++.
T Consensus 255 pea~~DFPV------------------------------------------amqv----------------s~kygviyv 276 (365)
T 2xzh_A 255 PEAQNDFPV------------------------------------------AMQI----------------SEKHDVVFL 276 (365)
T ss_dssp TTCTTCCEE------------------------------------------EEEE----------------ETTTTEEEE
T ss_pred ccccCCceE------------------------------------------EEEe----------------cccCCEEEE
Confidence 431 1111 0111 113477888
Q ss_pred EEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCc
Q psy15549 387 VATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGI 448 (621)
Q Consensus 387 ~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~ 448 (621)
.+.-|.|++||+.++.++..-. .-...|...+-+....-++.....|.|.--.++...++.
T Consensus 277 iTK~G~ihlyDleTgt~i~~nr-IS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ivp 337 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 337 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHHH
T ss_pred EeCCcEEEEEEcccCcEEEEec-cCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccEeh
Confidence 8899999999999999988764 355677766666555556666789998888888765543
No 306
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.40 E-value=0.1 Score=50.60 Aligned_cols=111 Identities=11% Similarity=0.015 Sum_probs=56.5
Q ss_pred CCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccC-
Q psy15549 14 DPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN- 92 (621)
Q Consensus 14 ~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 92 (621)
..-.+|+|.|||+ ++++ ..+|.|. +++. .+. ..+.-.............|+|+|+
T Consensus 29 ~~P~~ia~~pdG~-----l~V~-e~~g~I~--------------~~d~-~G~---~~~~~~~v~~~g~~g~~gia~~pdf 84 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-----YLVT-ERPGRLV--------------LISP-SGK---KLVASFDVANVGEAGLLGLALHPEF 84 (354)
T ss_dssp SCEEEEEEEETTE-----EEEE-ETTTEEE--------------EECS-SCE---EEEEECCCCCSTTCSEEEEEECTTT
T ss_pred CCCeEEEEcCCCe-----EEEE-eCCCEEE--------------EEeC-CCc---eEeeccceeecCCCceeeEEeCCCC
Confidence 4568999999995 5544 5558887 5542 221 101000011222356889999997
Q ss_pred ---CCEEEEEcC--------CceEEEEeccCccccccceec-cccc-ccCCCeEEEEECCCCCEEEEEe
Q psy15549 93 ---GELLASGDD--------VGKEIWYLTERESGIANVEFA-SDLS-RHQKAVNVVRFSPNGELLASGD 148 (621)
Q Consensus 93 ---g~~las~~d--------~~v~iw~~~~~~~~~~~~~~~-~~~~-~h~~~V~~i~~sp~g~~l~s~s 148 (621)
+.+.++-.. +.|..|+...........+.+ ..+. ........++|.|+|.++++.+
T Consensus 85 ~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 85 PKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp TTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred CcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 444443322 445556654431111111111 1111 1111245799999998766644
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.37 E-value=0.008 Score=56.58 Aligned_cols=156 Identities=8% Similarity=0.149 Sum_probs=102.4
Q ss_pred cEEEEEEccCCCEEEEEc--CCceEEEEeccCccccccceecccccc----c--CCCeEEEEE---CCCCCEEEEEe---
Q psy15549 83 AVNVVRFSPNGELLASGD--DVGKEIWYLTERESGIANVEFASDLSR----H--QKAVNVVRF---SPNGELLASGD--- 148 (621)
Q Consensus 83 ~V~~l~~spdg~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~----h--~~~V~~i~~---sp~g~~l~s~s--- 148 (621)
---+++|.+....|..++ .+.|..|+...+.. ..+ .+.+ . ...+..+.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-----~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-----FNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-----EEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-----EEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 345678987555555544 88899998764421 111 2221 1 124578999 68877777543
Q ss_pred ----------CCCcEEEEEcc---CCCCCCCCCCCCcccccccccceeeeeeec----------C-CCCCeEEEEECCCC
Q psy15549 149 ----------DESTIIVWKQK---TDQDLPEFPSSNLDEENVNKEHWIVTKILR----------G-HLEDVYDISWSPTS 204 (621)
Q Consensus 149 ----------~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~v~~i~~spd~ 204 (621)
.+..|..+|+. +++.+... .+. + -...+..++..++|
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-------------------dL~~~~~~~~~~~g~~~~~~nDvavD~~G 148 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSV-------------------NFEKVQDEFEKKAGKRPFGVVQSAQDRDG 148 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-------------------ESHHHHHHHHHHHSSCCEEEEEEEECTTS
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEe-------------------cCccccccccccccccccCCceeEECCCC
Confidence 25779999998 66654211 111 1 11347899999999
Q ss_pred CEEEEEeCC-CeEEEEECCCCcEEEEec------cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q psy15549 205 THLISGSVD-NTAIMWDVHKGKNLGILT------EHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQ 264 (621)
Q Consensus 205 ~~l~s~~~d-g~i~vwd~~~~~~~~~~~------~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~ 264 (621)
+..++++.. +.|..++.. ++.+..+. ........|+++|+|+.|++....|.|..+|+.
T Consensus 149 naYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 149 NSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 999999888 888777764 33333221 112236689999999999988779999999987
No 308
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.35 E-value=0.089 Score=55.29 Aligned_cols=146 Identities=12% Similarity=0.047 Sum_probs=84.3
Q ss_pred CEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCCCc
Q psy15549 94 ELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD-DESTIIVWKQKTDQDLPEFPSSNL 172 (621)
Q Consensus 94 ~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~ 172 (621)
.+|+-+....|+..++..... ....+...-..+..++|++.+..|+.+. ..+.|..+++......
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~~------~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~-------- 75 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGKE------NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV-------- 75 (619)
T ss_dssp CCEEEECSSBEEEECCC---------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C--------
T ss_pred ceEEEeccccEEEEeCCCCcc------eEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce--------
Confidence 355566677777777764310 1111222334578999999666666554 4578888887755311
Q ss_pred ccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEE
Q psy15549 173 DEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISG-SVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVAT 251 (621)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 251 (621)
...+...-.....+++.+.+..|+.+ ...+.|.+.++........+.........|+++|.+.+|+.
T Consensus 76 ------------~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~ 143 (619)
T 3s94_A 76 ------------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW 143 (619)
T ss_dssp ------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred ------------EEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEE
Confidence 12222233568899999866555554 45789999998654433333334455778999998766666
Q ss_pred EeC--CCcEEEEEccC
Q psy15549 252 LSS--DRSLRTYSIQS 265 (621)
Q Consensus 252 ~~~--dg~i~iwd~~~ 265 (621)
... .+.|...++..
T Consensus 144 tD~g~~~~I~r~~~dG 159 (619)
T 3s94_A 144 TDWGEVPKIERAGMDG 159 (619)
T ss_dssp EECSSSCEEEEEETTS
T ss_pred eccCCCCEEEEEECCC
Confidence 653 35566666643
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.33 E-value=0.13 Score=49.81 Aligned_cols=61 Identities=8% Similarity=0.209 Sum_probs=37.2
Q ss_pred CCcEEEEEEcCCcEEEEeCCCCceeEE--EecccccceEEEEEcCCCCeEEEEeCCCcEEEEEe
Q psy15549 380 PYRIVIAVATENNILLYDTQHASPFAF--IANIHYTKLTDITWSSDGKVLIASSTDGYCSIISF 441 (621)
Q Consensus 380 ~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~ 441 (621)
.+.++++....+.|...++..++.... +.......+..+++.|||.++++.. ++.=+||.+
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td-~~~g~I~ri 350 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTD-ESSGELLKV 350 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEEC-STTEEEEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEe-CCCCEEEEE
Confidence 455666555677888888776543322 2222235799999999998666543 222345554
No 310
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.32 E-value=0.051 Score=52.78 Aligned_cols=114 Identities=9% Similarity=0.049 Sum_probs=56.4
Q ss_pred CeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccC--
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN-- 92 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-- 92 (621)
.-+.|+|.|+|+ +|.++...|.|+ +++...... ..............+....|+|+|+
T Consensus 19 ~P~~i~~~pdG~-----~l~V~e~~G~i~--------------~~~~~g~~~-~~~~~~~~v~~~g~~g~~gia~~pdf~ 78 (353)
T 2g8s_A 19 HPWALAFLPDNH-----GMLITLRGGELR--------------HWQAGKGLS-APLSGVPDVWAHGQGGLLDVVLAPDFA 78 (353)
T ss_dssp SEEEEEECSTTC-----CEEEEETTTEEE--------------EEETTTEEC-CCCBSCCCCCCSTTCSEEEEEECTTHH
T ss_pred CcEEEEEcCCCC-----EEEEEeCCceEE--------------EEeCCCcee-eEecCCcccccCCCCCceeEEECCCCC
Confidence 468999999995 477777789888 554321110 0000000011223456789999996
Q ss_pred -CCEEEEE-cC--------CceEEEEeccCccccccceec-cccc---ccCCCeEEEEECCCCCEEEEEe
Q psy15549 93 -GELLASG-DD--------VGKEIWYLTERESGIANVEFA-SDLS---RHQKAVNVVRFSPNGELLASGD 148 (621)
Q Consensus 93 -g~~las~-~d--------~~v~iw~~~~~~~~~~~~~~~-~~~~---~h~~~V~~i~~sp~g~~l~s~s 148 (621)
+..|..+ .. ..|..|+...........+.+ ..+. ........++|.|+|.++++.+
T Consensus 79 ~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 79 QSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp HHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred CCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 4444433 21 234455554332111111111 1111 1111235799999996555543
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.28 E-value=0.021 Score=55.07 Aligned_cols=194 Identities=15% Similarity=0.206 Sum_probs=110.5
Q ss_pred cEEEEEEccCCCEEEEE-------------cCCceEEEEeccCccccccceeccc-ccccCCCeEEEEECC--CCC-EEE
Q psy15549 83 AVNVVRFSPNGELLASG-------------DDVGKEIWYLTERESGIANVEFASD-LSRHQKAVNVVRFSP--NGE-LLA 145 (621)
Q Consensus 83 ~V~~l~~spdg~~las~-------------~d~~v~iw~~~~~~~~~~~~~~~~~-~~~h~~~V~~i~~sp--~g~-~l~ 145 (621)
..-.++..|+|..++++ .++.|.+++..........+...-. +.........+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44566678888777776 3667888887643322222221110 222334666777755 454 444
Q ss_pred EE-eC--CCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecC-CCCCeEEEEECCCCCEEEEEeC---------
Q psy15549 146 SG-DD--ESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRG-HLEDVYDISWSPTSTHLISGSV--------- 212 (621)
Q Consensus 146 s~-s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~spd~~~l~s~~~--------- 212 (621)
.+ .. +.+|.+|+++....... ....+.+ .-...+.+.+.++|.+.++...
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~-----------------~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~ 193 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLL-----------------HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKS 193 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEE-----------------EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHH
T ss_pred EEECCCCCCeEEEEEEECCCCEEE-----------------EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccccc
Confidence 44 22 56788888776532211 1222332 2346789999999987776541
Q ss_pred --------CCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEEEeC-CCcEEEEEccC-ceeeeecccCCCCCCCc
Q psy15549 213 --------DNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSS-DRSLRTYSIQS-KKVISRACRSKLPVDSS 282 (621)
Q Consensus 213 --------dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~-dg~i~iwd~~~-~~~~~~~~~~~~~~~~~ 282 (621)
.|.|..+|. ++. ..+...-.....++|+||++.|+.+.. .+.|..|++.. +..... .
T Consensus 194 ~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~-~--------- 260 (355)
T 3sre_A 194 WEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL-R--------- 260 (355)
T ss_dssp HHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE-E---------
T ss_pred chhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecC-E---------
Confidence 244555554 332 222223344678999999998887764 67899999863 322110 0
Q ss_pred cccccccccccccCCcccceeeeeecC-CCCeEEecc
Q psy15549 283 HELFDKVVPLFHDDTMKSFFRRLTFSP-DGQLLIAPS 318 (621)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~i~~~~~sp-dg~~l~~~s 318 (621)
.+ ........+++.+ +|++.+++.
T Consensus 261 ---------~~---~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 261 ---------VL---SFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp ---------EE---ECSSEEEEEEECTTTCCEEEEEE
T ss_pred ---------EE---eCCCCCceEEEeCCCCcEEEEec
Confidence 01 0123457789999 588777543
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.23 E-value=0.026 Score=54.77 Aligned_cols=163 Identities=15% Similarity=0.141 Sum_probs=98.2
Q ss_pred EccCCCEEEEEcCCceEEEEeccCccccccceecccccc--cCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC
Q psy15549 89 FSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSR--HQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPE 166 (621)
Q Consensus 89 ~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~--h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~ 166 (621)
.+.+|..|+.+-++.++.-++.... .++.+. +.. --..|..+..+|+|++||..+. ..|.|-.+..+.....
T Consensus 28 ~~~n~t~i~~a~~n~iR~~~i~~~~----~Yk~L~-~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 28 SSQNGTRIVFIQDNIIRWYNVLTDS----LYHSLN-FSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVE 101 (452)
T ss_dssp EETTTTEEEEEETTEEEEEETTTCS----SCEEEE-CTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCC
T ss_pred EEcCCCEEEEEECCEEEEEECCCCC----cceEEe-cCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCc
Confidence 4567888888888888887777532 122221 111 1225778999999999999875 5799999884432210
Q ss_pred CCCCCcccccccccceeeeeeecCCCCCeEEEEECCC---CCEEEEEeCCCeEEEEECCCCc--EEEEec---------c
Q psy15549 167 FPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT---STHLISGSVDNTAIMWDVHKGK--NLGILT---------E 232 (621)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd---~~~l~s~~~dg~i~vwd~~~~~--~~~~~~---------~ 232 (621)
- ...........+.+..........|..+.|+|- +..|++-..|+.|++||+.... +. .++ .
T Consensus 102 ~---~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~ 177 (452)
T 3pbp_A 102 D---VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDA 177 (452)
T ss_dssp C---HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCS
T ss_pred c---cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCc
Confidence 0 000000011111111111113678999999994 5689999999999999997521 22 232 1
Q ss_pred CCcceEEEEEcCCCCEEEEEe--CCCcEEEE
Q psy15549 233 HKKFVQGVAWDPKNQYVATLS--SDRSLRTY 261 (621)
Q Consensus 233 ~~~~v~~l~~sp~~~~l~s~~--~dg~i~iw 261 (621)
....|.+++|.+++-.|...+ ..|.|+-.
T Consensus 178 ~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 178 RVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 225678899998776666655 66765543
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.20 E-value=0.19 Score=48.93 Aligned_cols=250 Identities=11% Similarity=0.122 Sum_probs=152.0
Q ss_pred EEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCC
Q psy15549 86 VVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLP 165 (621)
Q Consensus 86 ~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~ 165 (621)
+.-.+|..+.||.-....++|+++... ..+..+.- ...|.-=.|-.+. .|+..+ +..|.-|++......
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnle~K-------~klks~~~-~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P- 138 (494)
T 1bpo_A 70 SAIMNPASKVIALKAGKTLQIFNIEMK-------SKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQP- 138 (494)
T ss_dssp EEEECSSSSCEEEEETTEEEEEETTTT-------EEEEEEEC-SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCC-
T ss_pred eeeeCCCCcEEEEecCCeEEEEchHHh-------hhhcceec-CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCc-
Confidence 344788888888877888999999886 33333322 3456666776443 455554 357999999764321
Q ss_pred CCCCCCcccccccccceeeeeeecCC----CCCeEEEEECCCCCEEEEEeC-------CCeEEEEECCCCcEEEEeccCC
Q psy15549 166 EFPSSNLDEENVNKEHWIVTKILRGH----LEDVYDISWSPTSTHLISGSV-------DNTAIMWDVHKGKNLGILTEHK 234 (621)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~i~~spd~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~ 234 (621)
.+.+..| ...|..-..+++.++++..+- .|.+.+|..+.+ .-+.+.+|.
T Consensus 139 -------------------~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGha 198 (494)
T 1bpo_A 139 -------------------VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 198 (494)
T ss_dssp -------------------EEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSE
T ss_pred -------------------hhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeee
Confidence 2333332 356777888899998775432 478899998655 446778887
Q ss_pred cceEEEEEcCCC---CEEEEEeCC---CcEEEEEccCce-eeeecccCCCCCCCccccccccccccccCCcccceeeeee
Q psy15549 235 KFVQGVAWDPKN---QYVATLSSD---RSLRTYSIQSKK-VISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTF 307 (621)
Q Consensus 235 ~~v~~l~~sp~~---~~l~s~~~d---g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 307 (621)
+....+.+.-+. ..|+.+... +.++|.++.... ... ........+-|
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~--------------------------~f~kk~vdv~f 252 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ--------------------------PFPKKAVDVFF 252 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC--------------------------CCCCEEEECCC
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC--------------------------CccceeeeeeC
Confidence 666554443221 234444432 567777764320 000 00011123334
Q ss_pred cCCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEE
Q psy15549 308 SPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAV 387 (621)
Q Consensus 308 spdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (621)
.|+.. .| .-.++.. +..++.++..
T Consensus 253 ppe~~-----------~D-----------------------------FPvamqv----------------s~kygviyvi 276 (494)
T 1bpo_A 253 PPEAQ-----------ND-----------------------------FPVAMQI----------------SEKHDVVFLI 276 (494)
T ss_dssp CTTST-----------TC-----------------------------CEEEEEE----------------ETTTTEEEEE
T ss_pred Ccccc-----------cC-----------------------------ceeEEEe----------------cccCCEEEEE
Confidence 44311 00 0000111 1144677788
Q ss_pred EcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCcc
Q psy15549 388 ATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIP 449 (621)
Q Consensus 388 ~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~ 449 (621)
+.-|.|++||+.++.++..-. .....|...+-+....-++.....|.|.--.++...++.-
T Consensus 277 TK~G~i~lyDleTgt~i~~nr-Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivpy 337 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPY 337 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHHH
T ss_pred ecCceEEEEecccceeeeeec-ccCCceEEecccCCCCcEEEEccCceEEEEEEccccchhh
Confidence 889999999999999988764 4566777777766666677777999998888887665443
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.11 E-value=0.21 Score=47.80 Aligned_cols=111 Identities=19% Similarity=0.146 Sum_probs=64.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCC---CC
Q psy15549 129 QKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPT---ST 205 (621)
Q Consensus 129 ~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd---~~ 205 (621)
-...+.|+|.|+|.++++--..|.|++++...+... .+. .+.............|+++|+ +.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~--------------~~~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELG--------------EVPGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEE--------------ECTTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eec--------------ccCceeecCCCCceeeEeccccccCC
Confidence 345789999999997777665899999876544321 000 000111233556899999995 34
Q ss_pred EEEEE---eCCCeEEEEECCCC----------cEEE-Eec-cCCcceEEEEEcCCCCEEEEEeC
Q psy15549 206 HLISG---SVDNTAIMWDVHKG----------KNLG-ILT-EHKKFVQGVAWDPKNQYVATLSS 254 (621)
Q Consensus 206 ~l~s~---~~dg~i~vwd~~~~----------~~~~-~~~-~~~~~v~~l~~sp~~~~l~s~~~ 254 (621)
.|... ..++.|.-|.+..+ +.+. .+. ........|.|.|||.+.++.+.
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence 44433 23456666665541 1111 121 11223457999999987776543
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.10 E-value=0.044 Score=53.23 Aligned_cols=124 Identities=18% Similarity=0.174 Sum_probs=79.3
Q ss_pred cEEEEEEccCCCEEEEEcCCceEEEEeccCccccc------cceeccccc------ccCCCeEEEEECC---CCCEEEEE
Q psy15549 83 AVNVVRFSPNGELLASGDDVGKEIWYLTERESGIA------NVEFASDLS------RHQKAVNVVRFSP---NGELLASG 147 (621)
Q Consensus 83 ~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~------~~~~~~~~~------~h~~~V~~i~~sp---~g~~l~s~ 147 (621)
.|..+..||+|++||..++.+|.|..+..+..... .+. ...+. ....+|..+.|+| .+..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 57779999999999999999999999985432111 011 01111 1356799999999 45689999
Q ss_pred eCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe--CCCeEEE
Q psy15549 148 DDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS--VDNTAIM 218 (621)
Q Consensus 148 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~--~dg~i~v 218 (621)
..|+.|++||+........ ..+... ...........|.+++|.+++-.|...+ ..|.|+-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~---------~L~k~~--~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI---------VLNKPN--NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE---------EESCCC--SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred ecCCEEEEEEcccCCCCCc---------chhccc--cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 9999999999987332211 000000 0012233447788999998765555544 5565543
No 316
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.89 E-value=0.43 Score=47.89 Aligned_cols=110 Identities=9% Similarity=0.145 Sum_probs=61.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeee--cCCCCCeEEEEECCC---C
Q psy15549 130 KAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL--RGHLEDVYDISWSPT---S 204 (621)
Q Consensus 130 ~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~spd---~ 204 (621)
...+.|+|.|+|+++++-...+.|++++..++... .+. .+...+ .........|+|+|+ +
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~-~~~--------------~~~~~~~~~~g~~Gllgia~~Pdf~~~ 91 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK-TVF--------------QVPEIVNDADGQNGLLGFAFHPDFKNN 91 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEE--------------ECTTCCCCTTSSCSEEEEEECTTTTTS
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe-EEe--------------cCCccccccCCCCceeEEEECCCcCcC
Confidence 35679999999987776554457888875443311 000 000001 013466889999995 5
Q ss_pred CEEEEEeC-------------CCeEEEEECCCC-------cEEE-Eec-cCCcceEEEEEcCCCCEEEEEeC
Q psy15549 205 THLISGSV-------------DNTAIMWDVHKG-------KNLG-ILT-EHKKFVQGVAWDPKNQYVATLSS 254 (621)
Q Consensus 205 ~~l~s~~~-------------dg~i~vwd~~~~-------~~~~-~~~-~~~~~v~~l~~sp~~~~l~s~~~ 254 (621)
..|..+.. ...|.-|++..+ +.+. .+. ........|+|.|||.+.++.+.
T Consensus 92 g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 92 PYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 55554432 235655655332 1111 121 12234688999999987776554
No 317
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.88 E-value=0.33 Score=46.42 Aligned_cols=118 Identities=9% Similarity=0.029 Sum_probs=62.7
Q ss_pred eeecCCCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeec-cccccccCcEEE
Q psy15549 8 ISWHNRDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFA-SDLSRHQKAVNV 86 (621)
Q Consensus 8 ~~~~h~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~-~~~~~h~~~V~~ 86 (621)
+....-..-+.|+|.|||. ++++--..|.|+ +++...+... .+... ..+.........
T Consensus 26 ~va~gL~~P~~ia~~pdG~-----llVter~~G~I~--------------~v~~~~g~~~--~v~~~~~v~~~g~~GllG 84 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGD-----LLVSSRDEATIT--------------RVDAKTGRKT--ELGEVPGVSPSGEGGLLG 84 (347)
T ss_dssp EEECCCSSEEEEEECTTSC-----EEEEETTTCEEE--------------EECTTTCCEE--EEEECTTCCCBTTBSEEE
T ss_pred EeecCCCCceEEEEcCCCc-----EEEEEecCCEEE--------------EEECCCCcEe--eecccCceeecCCCCcee
Confidence 3333344678999999997 777776688888 5543322211 01101 112334567899
Q ss_pred EEEccC----CCEEEEE---cCCceEEEEeccCc---ccccccee-cccc---cccCCCeEEEEECCCCCEEEEEe
Q psy15549 87 VRFSPN----GELLASG---DDVGKEIWYLTERE---SGIANVEF-ASDL---SRHQKAVNVVRFSPNGELLASGD 148 (621)
Q Consensus 87 l~~spd----g~~las~---~d~~v~iw~~~~~~---~~~~~~~~-~~~~---~~h~~~V~~i~~sp~g~~l~s~s 148 (621)
|+|+|+ +.+.++- .++.|.-|...... ......+. +..+ ..| .-..|+|.|||.++++.+
T Consensus 85 ia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 85 IALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECB
T ss_pred eEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEEC
Confidence 999995 4444432 23444444444321 01111111 1111 224 345799999998777754
No 318
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.68 E-value=1.3 Score=50.22 Aligned_cols=60 Identities=10% Similarity=0.256 Sum_probs=36.6
Q ss_pred cEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecC
Q psy15549 382 RIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGD 443 (621)
Q Consensus 382 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~ 443 (621)
++++++ -...|++|++...+.+. ....+...|..+.....|.+++.|..-..|.++.++.
T Consensus 896 g~Lla~-ig~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 896 GKLLAS-INSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp TEEEEE-ETTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred CEEEEE-cCCEEEEEECCCCceEE-EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 344443 45789999998766444 2111222233333333578999998888888887763
No 319
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.64 E-value=0.039 Score=48.32 Aligned_cols=69 Identities=19% Similarity=0.098 Sum_probs=41.6
Q ss_pred EEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEE
Q psy15549 84 VNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIV 155 (621)
Q Consensus 84 V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~v 155 (621)
-.++.|.|+|.+.++ +|+.|.-++-.+.+.......-...-.+.-..+..|.|.|+|.+.+.. |+.+.-
T Consensus 90 F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 478899999999999 777665555433322111111011111122467999999999877776 777543
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.61 E-value=0.18 Score=47.51 Aligned_cols=64 Identities=9% Similarity=0.127 Sum_probs=37.0
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCc---EEEE--eccCCcceEEEEEcCCCCEEEEEeCC-----CcEEEEEccCce
Q psy15549 203 TSTHLISGSVD-----NTAIMWDVHKGK---NLGI--LTEHKKFVQGVAWDPKNQYVATLSSD-----RSLRTYSIQSKK 267 (621)
Q Consensus 203 d~~~l~s~~~d-----g~i~vwd~~~~~---~~~~--~~~~~~~v~~l~~sp~~~~l~s~~~d-----g~i~iwd~~~~~ 267 (621)
++.+++.|+.+ ..+.+||+.+.+ -... +.........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 56677777754 468999998765 2222 2111111222222 56677777654 358889987765
Q ss_pred e
Q psy15549 268 V 268 (621)
Q Consensus 268 ~ 268 (621)
-
T Consensus 140 W 140 (301)
T 2vpj_A 140 W 140 (301)
T ss_dssp E
T ss_pred E
Confidence 3
No 321
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.43 E-value=1.8 Score=49.00 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=45.9
Q ss_pred cCcEEEEEEccC------CCEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEEC--CCCCEEEEEeCC
Q psy15549 81 QKAVNVVRFSPN------GELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFS--PNGELLASGDDE 150 (621)
Q Consensus 81 ~~~V~~l~~spd------g~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s--p~g~~l~s~s~d 150 (621)
...|.|+++.|. +.++|.|. |+.++|+++...+. .....+.. .....++.+. ....+|..|-.|
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~-----~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~d 626 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL-----LHKEMLGG-EIIPRSILMTTFESSHYLLCALGD 626 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE-----EEEEECCS-SCCEEEEEEEEETTEEEEEEEETT
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe-----EEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCC
Confidence 457999999863 46888887 78899999975321 11112211 1223333332 233578889999
Q ss_pred CcEEEEEccC
Q psy15549 151 STIIVWKQKT 160 (621)
Q Consensus 151 g~i~vwd~~~ 160 (621)
|.+..+.++.
T Consensus 627 G~l~~~~~d~ 636 (1158)
T 3ei3_A 627 GALFYFGLNI 636 (1158)
T ss_dssp SEEEEEEECT
T ss_pred CeEEEEEEcC
Confidence 9887776543
No 322
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.30 E-value=0.34 Score=45.53 Aligned_cols=146 Identities=12% Similarity=0.196 Sum_probs=74.0
Q ss_pred CCCEEEEEc-C-----CceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCC-----CcEEEEEccC
Q psy15549 92 NGELLASGD-D-----VGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE-----STIIVWKQKT 160 (621)
Q Consensus 92 dg~~las~~-d-----~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~d-----g~i~vwd~~~ 160 (621)
++++++.|+ + ..+.+||...... ..+..+......-.++.+ ++++++.|+.+ ..+.+||+.+
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W-----~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQW-----SMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEE-----EEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeE-----EECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 567777765 2 2356677665532 222222111111222222 66777777654 3577777766
Q ss_pred CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcEEEEe--ccC
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVD-----NTAIMWDVHKGKNLGIL--TEH 233 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~d-----g~i~vwd~~~~~~~~~~--~~~ 233 (621)
.. |.....+........++.+ ++++++.|+.+ ..+.+||+.+.+-...- ...
T Consensus 185 ~~-------------------W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 185 GH-------------------WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp TE-------------------EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred Cc-------------------EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence 53 2222222211112223333 56677777764 46899999876543321 111
Q ss_pred CcceEEEEEcCCCCEEEEEeCC-----CcEEEEEccCce
Q psy15549 234 KKFVQGVAWDPKNQYVATLSSD-----RSLRTYSIQSKK 267 (621)
Q Consensus 234 ~~~v~~l~~sp~~~~l~s~~~d-----g~i~iwd~~~~~ 267 (621)
......+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 244 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 244 RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 111222222 56777777765 357888887654
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.29 E-value=0.76 Score=43.22 Aligned_cols=145 Identities=8% Similarity=-0.038 Sum_probs=73.1
Q ss_pred CEEEEEc---CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCC----CcEEEEEccCCCCCCC
Q psy15549 94 ELLASGD---DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE----STIIVWKQKTDQDLPE 166 (621)
Q Consensus 94 ~~las~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~d----g~i~vwd~~~~~~~~~ 166 (621)
.+++.|+ .+.+.+||...... ..+..+......-..+.+ ++.+++.|+.+ ..+.+||..+..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W-----~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~---- 81 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSW-----TDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDS---- 81 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEE-----EECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTE----
T ss_pred eEEEEeCCCCCceEEEecCCCCCE-----ecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCe----
Confidence 3445555 34577777776532 222222222222222222 56677777754 467778776653
Q ss_pred CCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCC------CeEEEEECCCCcEEEEe--ccCCcceE
Q psy15549 167 FPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVD------NTAIMWDVHKGKNLGIL--TEHKKFVQ 238 (621)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~d------g~i~vwd~~~~~~~~~~--~~~~~~v~ 238 (621)
|.....+........++.+ ++++++.|+.+ ..+.+||+.+.+-...- ........
T Consensus 82 ---------------W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 144 (306)
T 3ii7_A 82 ---------------WYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHG 144 (306)
T ss_dssp ---------------EEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred ---------------EEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeE
Confidence 2222222222222222333 56677777754 46889999876533221 11111112
Q ss_pred EEEEcCCCCEEEEEeC---------CCcEEEEEccCcee
Q psy15549 239 GVAWDPKNQYVATLSS---------DRSLRTYSIQSKKV 268 (621)
Q Consensus 239 ~l~~sp~~~~l~s~~~---------dg~i~iwd~~~~~~ 268 (621)
.+. -+++.++.|+. -..+.+||+.+.+-
T Consensus 145 ~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W 181 (306)
T 3ii7_A 145 MVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181 (306)
T ss_dssp EEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred EEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence 222 25666666654 34588999887654
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.25 E-value=0.48 Score=44.65 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=38.4
Q ss_pred CCCEEEEEeCC----CeEEEEECCCCcEEEE--eccCCcceEEEEEcCCCCEEEEEeCC------CcEEEEEccCcee
Q psy15549 203 TSTHLISGSVD----NTAIMWDVHKGKNLGI--LTEHKKFVQGVAWDPKNQYVATLSSD------RSLRTYSIQSKKV 268 (621)
Q Consensus 203 d~~~l~s~~~d----g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~~~d------g~i~iwd~~~~~~ 268 (621)
++.+++.|+.+ ..+.+||+.+.+-... +.........+.+ +++.++.|+.+ ..+.+||..+.+-
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 56677777754 6788999987653322 2111111222222 56777777765 4588999887654
No 325
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.24 E-value=0.072 Score=53.43 Aligned_cols=122 Identities=12% Similarity=0.092 Sum_probs=71.5
Q ss_pred ccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeecccccc----ccCcEE--EEEEc---cCC
Q psy15549 23 LKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSR----HQKAVN--VVRFS---PNG 93 (621)
Q Consensus 23 pd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~----h~~~V~--~l~~s---pdg 93 (621)
|-|+.|.++.+.+|+..|.|+||=+.+.+.+..|-+++......--..-+....|.. ..+... .+.+. .||
T Consensus 63 ~pG~~Deyy~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDG 142 (638)
T 3sbq_A 63 GPGELDDYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDG 142 (638)
T ss_dssp CTTCCCSEEEEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEE
T ss_pred CCCCcccEEEEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeee
Confidence 447778889999999999999999998888877777766532211000001111110 011122 22332 378
Q ss_pred CEEEEEc--CCceEEEEeccCccccccceecccccccCCCeEEEEEC--CCCCEEEEEeCC
Q psy15549 94 ELLASGD--DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFS--PNGELLASGDDE 150 (621)
Q Consensus 94 ~~las~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s--p~g~~l~s~s~d 150 (621)
++|..-. ...|...++..-+. ..+..+ .....+..++|- |+..|++.+++.
T Consensus 143 rylfiNdkan~RvAri~l~~~~~-----d~Ii~i-Pn~~~~Hg~~~~~~p~T~yv~~~~e~ 197 (638)
T 3sbq_A 143 KYLFINDKANSRVARIRLDIMKC-----DKMITV-PNVQAIHGLRLQKVPHTKYVFANAEF 197 (638)
T ss_dssp EEEEEEETTTTEEEEEETTTTEE-----EEEEEC-TTCSCEEEEEECCSSBCCEEEEEECS
T ss_pred EEEEEecCCCcceEEEECCcEee-----ceeEeC-CCCcCcccccccccCCccEEEeccee
Confidence 8999887 34455555554421 111111 234567888886 677888888754
No 326
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.23 E-value=0.76 Score=43.13 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=55.7
Q ss_pred CCCEEEEEeCCC-----cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q psy15549 140 NGELLASGDDES-----TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDN 214 (621)
Q Consensus 140 ~g~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg 214 (621)
++.+++.|+.++ .+.+||..+.+ |.....+........++.+ ++.+++.|+.++
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~-------------------W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 119 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQ-------------------WTSVANMRDRRSTLGAAVL--NGLLYAVGGFDG 119 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTE-------------------EEEECCCSSCCBSCEEEEE--TTEEEEEEEECS
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCc-------------------eeeCCCCCccccceEEEEE--CCEEEEEcCCCC
Confidence 566777777543 47777776553 2222222222222222333 566777777553
Q ss_pred -----eEEEEECCCCcEEEE--eccCCcceEEEEEcCCCCEEEEEeCC-------CcEEEEEccCceee
Q psy15549 215 -----TAIMWDVHKGKNLGI--LTEHKKFVQGVAWDPKNQYVATLSSD-------RSLRTYSIQSKKVI 269 (621)
Q Consensus 215 -----~i~vwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~~~d-------g~i~iwd~~~~~~~ 269 (621)
.+.+||+.+.+-... +.........+.+ +++.++.|+.+ ..+.+||+.+.+-.
T Consensus 120 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 120 STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp SCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 578889877653322 1111111122222 46666666543 35888998876543
No 327
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.20 E-value=0.34 Score=45.58 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=37.5
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEe--ccCCcceEEEEEcCCCCEEEEEeCCC-----cEEEEEccCcee
Q psy15549 203 TSTHLISGSVD-----NTAIMWDVHKGKNLGIL--TEHKKFVQGVAWDPKNQYVATLSSDR-----SLRTYSIQSKKV 268 (621)
Q Consensus 203 d~~~l~s~~~d-----g~i~vwd~~~~~~~~~~--~~~~~~v~~l~~sp~~~~l~s~~~dg-----~i~iwd~~~~~~ 268 (621)
++++++.|+.+ ..+.+||+.+.+-...- .........+. -+++.++.|+.++ .+.+||+.+.+-
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 56777777654 46899999876533221 11111111222 2567777777653 488999887653
No 328
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.18 E-value=0.85 Score=42.80 Aligned_cols=139 Identities=9% Similarity=0.084 Sum_probs=79.4
Q ss_pred EccCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCC--------------CcE
Q psy15549 89 FSPNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE--------------STI 153 (621)
Q Consensus 89 ~spdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~d--------------g~i 153 (621)
|+.+|.+|.... .+.-.||.+...+.. ...+... .+--++++|.+|+.+... ..|
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~------~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~I 90 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN------IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSL 90 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS------CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC------CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeE
Confidence 346777777664 223467777654432 2222211 133457889988877643 356
Q ss_pred EEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe--C--CCeEEEEECCCCcEEEE
Q psy15549 154 IVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS--V--DNTAIMWDVHKGKNLGI 229 (621)
Q Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~--~--dg~i~vwd~~~~~~~~~ 229 (621)
+..+++.... ..+.... +..|++++++|+-.. . ...|...++.... ...
T Consensus 91 y~i~~dg~~~----------------------~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~ 143 (302)
T 3s25_A 91 CRIKRNGHGS----------------------TVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKK 143 (302)
T ss_dssp EEEETTSCCC----------------------EEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEE
T ss_pred EEEeCCCCcc----------------------eEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEE
Confidence 6667666542 1122111 236777888888776 2 3456666665333 344
Q ss_pred eccCCcceEEEEEcCCCCEEEEEeC-CCcEEEEEccCcee
Q psy15549 230 LTEHKKFVQGVAWDPKNQYVATLSS-DRSLRTYSIQSKKV 268 (621)
Q Consensus 230 ~~~~~~~v~~l~~sp~~~~l~s~~~-dg~i~iwd~~~~~~ 268 (621)
+..+.. ..|+++++.|+..+. ...|...++..+..
T Consensus 144 lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~ 179 (302)
T 3s25_A 144 IKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE 179 (302)
T ss_dssp EESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE
T ss_pred EeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE
Confidence 433332 456788998887765 56777778766543
No 329
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.06 E-value=1 Score=50.93 Aligned_cols=250 Identities=11% Similarity=0.112 Sum_probs=142.0
Q ss_pred EEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC
Q psy15549 87 VRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPE 166 (621)
Q Consensus 87 l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~ 166 (621)
.-.+|..+.||.-....++|+++... ..+..+.- ...|.-=.|-.+. .|+..+ +..|.-|++......
T Consensus 71 AIMnP~~~iiALrag~~lQiFnl~~k-------~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P-- 138 (1630)
T 1xi4_A 71 AIMNPASKVIALKAGKTLQIFNIEMK-------SKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQP-- 138 (1630)
T ss_pred hccCCCcceEEEecCCeEEEeehHHh-------hhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCcc--
Confidence 34688888888877888999999876 22333222 3456666776544 344444 346999999753221
Q ss_pred CCCCCcccccccccceeeeeeecCC----CCCeEEEEECCCCCEEEEEe-------CCCeEEEEECCCCcEEEEeccCCc
Q psy15549 167 FPSSNLDEENVNKEHWIVTKILRGH----LEDVYDISWSPTSTHLISGS-------VDNTAIMWDVHKGKNLGILTEHKK 235 (621)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~i~~spd~~~l~s~~-------~dg~i~vwd~~~~~~~~~~~~~~~ 235 (621)
.+.+..| ...|..-..+++.++++..+ -.|.+.+|..+.+ .-+.+.+|.+
T Consensus 139 ------------------~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~ 199 (1630)
T 1xi4_A 139 ------------------VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 199 (1630)
T ss_pred ------------------HHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHh
Confidence 1222222 45677777888888877543 3588999998654 3355667766
Q ss_pred ceEEEEEcC---CCCEEEEEeC---CCcEEEEEccCc-eeeeecccCCCCCCCccccccccccccccCCcccceeeeeec
Q psy15549 236 FVQGVAWDP---KNQYVATLSS---DRSLRTYSIQSK-KVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFS 308 (621)
Q Consensus 236 ~v~~l~~sp---~~~~l~s~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 308 (621)
....+.... ....++.+.. .+.++|-++... .....+ ......+-|.
T Consensus 200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f--------------------------~kk~~~~~~~ 253 (1630)
T 1xi4_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF--------------------------PKKAVDVFFP 253 (1630)
T ss_pred hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC--------------------------ccccccccCC
Confidence 554444321 1223333322 256777766432 000000 0011223333
Q ss_pred CCCCeEEeccccccCCCCCCcceeeeeeeeecccCCCceecCCcccceeeeeccceeeecCCCCCCCCccCCCcEEEEEE
Q psy15549 309 PDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVA 388 (621)
Q Consensus 309 pdg~~l~~~s~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (621)
|+.. .|- -.++. .+...+.+...+
T Consensus 254 ~~~~-----------~Df-----------------------------pv~~~----------------vs~k~g~iy~it 277 (1630)
T 1xi4_A 254 PEAQ-----------NDF-----------------------------PVAMQ----------------ISEKHDVVFLIT 277 (1630)
T ss_pred cccc-----------cCc-----------------------------ceEEE----------------eccccCEEEEEe
Confidence 3310 000 00000 111346777888
Q ss_pred cCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecCCcCCccc
Q psy15549 389 TENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGDNEIGIPY 450 (621)
Q Consensus 389 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~ 450 (621)
.-|.|++||+.++.++..-. ....+|...+-+....-++.....|.|.--.++...++.-+
T Consensus 278 k~G~~~~~d~~t~~~i~~~r-is~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~yi 338 (1630)
T 1xi4_A 278 KYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYI 338 (1630)
T ss_pred cCceEEEEecccchhhhhcc-ccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhhhhH
Confidence 89999999999998877653 34556666665554444555568888888888776655433
No 330
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.04 E-value=0.11 Score=45.58 Aligned_cols=154 Identities=12% Similarity=0.067 Sum_probs=82.9
Q ss_pred cEEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccc--cCCCeEEEEECCCCCEEEEEeCCCcEEEEEccC
Q psy15549 83 AVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSR--HQKAVNVVRFSPNGELLASGDDESTIIVWKQKT 160 (621)
Q Consensus 83 ~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~--h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~ 160 (621)
.+..++|+|+|.+.++ .++. +|...........+--..+..+ .-..-.++.|.|+|.+.++ .||.|.-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~--Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDK--IYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTE--EEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE-eCCe--EEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 6779999999998777 5554 6665543211111000000000 0011468899999987777 569888776533
Q ss_pred CCCCCCCCCCCcccccccccceeee--eeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCc------EEEEe-c
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVT--KILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGK------NLGIL-T 231 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~------~~~~~-~ 231 (621)
.... .|.-. ..-..-=..+..|.|.|+|.+.++. |+.++-+...++. ....+ .
T Consensus 117 ~~~~----------------~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~ 178 (236)
T 1tl2_A 117 SDTD----------------NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQ 178 (236)
T ss_dssp STTC----------------CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEES
T ss_pred CCCC----------------ceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceecc
Confidence 2211 12111 1111122467999999999877766 7775433222111 01111 1
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy15549 232 EHKKFVQGVAWDPKNQYVATLSSDRSLRTYSI 263 (621)
Q Consensus 232 ~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~ 263 (621)
..-...+.+.|.+++...++. +| ++|-.
T Consensus 179 ~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 179 GGWDTFKFLFFSSVGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp SSGGGEEEEEECTTSCEEEEE--TT--EEEEE
T ss_pred CCcceEEEEEECCCCcEEEEe--CC--eEEec
Confidence 222334557788888877655 66 44443
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.99 E-value=1 Score=42.50 Aligned_cols=102 Identities=11% Similarity=0.107 Sum_probs=52.8
Q ss_pred EEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeC-----C----
Q psy15549 143 LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSV-----D---- 213 (621)
Q Consensus 143 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~-----d---- 213 (621)
+++.|+ ..+.+||..+++ |.. ..+..............++.+++.|+. .
T Consensus 7 l~~~GG--~~~~~yd~~~~~-------------------W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 64 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANE-------------------CYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDP 64 (315)
T ss_dssp EEEEET--TEEEEEETTTTE-------------------EEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSC
T ss_pred EEEEcC--CceEEECCCCCe-------------------Eec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccc
Confidence 344555 468889887765 222 122212122233333457778888873 1
Q ss_pred --CeEEEEECCCCcEEEE--eccCCcceEEEEEcCCCCEEEEEeCC--------CcEEEEEccCcee
Q psy15549 214 --NTAIMWDVHKGKNLGI--LTEHKKFVQGVAWDPKNQYVATLSSD--------RSLRTYSIQSKKV 268 (621)
Q Consensus 214 --g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~~~d--------g~i~iwd~~~~~~ 268 (621)
..+.+||..+.+-... +.........+.+ ++..++.|+.+ ..+.+||..+.+-
T Consensus 65 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W 129 (315)
T 4asc_A 65 MSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW 129 (315)
T ss_dssp EEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEE
T ss_pred cccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcE
Confidence 1277889877653221 1111111112222 46666666632 4588999887653
No 332
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.80 E-value=0.71 Score=43.53 Aligned_cols=147 Identities=14% Similarity=0.158 Sum_probs=75.1
Q ss_pred CCCEEEEEc-C-----CceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCC-----CcEEEEEccC
Q psy15549 92 NGELLASGD-D-----VGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE-----STIIVWKQKT 160 (621)
Q Consensus 92 dg~~las~~-d-----~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~d-----g~i~vwd~~~ 160 (621)
++++++.|+ + ..+.+||...... ..+..+......-.++.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-----~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEW-----HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEE-----EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeE-----eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence 667777765 2 3467777766532 222222221222222333 56677777654 3577788765
Q ss_pred CCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcEEEE--eccC
Q psy15549 161 DQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVD-----NTAIMWDVHKGKNLGI--LTEH 233 (621)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~d-----g~i~vwd~~~~~~~~~--~~~~ 233 (621)
.. |.....+........++.+ ++++++.|+.+ ..+.+||+.+.+-... +...
T Consensus 194 ~~-------------------W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 194 NE-------------------WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp TE-------------------EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred Ce-------------------EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC
Confidence 53 2222211111122223333 56677777654 5689999987653322 1111
Q ss_pred CcceEEEEEcCCCCEEEEEeCC-----CcEEEEEccCcee
Q psy15549 234 KKFVQGVAWDPKNQYVATLSSD-----RSLRTYSIQSKKV 268 (621)
Q Consensus 234 ~~~v~~l~~sp~~~~l~s~~~d-----g~i~iwd~~~~~~ 268 (621)
......+.+ +++.++.|+.+ ..+.+||+.+.+-
T Consensus 253 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 253 RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 111122222 56777777754 3578888877653
No 333
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.70 E-value=0.8 Score=42.99 Aligned_cols=140 Identities=7% Similarity=0.072 Sum_probs=78.6
Q ss_pred EEEccCCCEEEEEcC-C------------ceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEe--CCC
Q psy15549 87 VRFSPNGELLASGDD-V------------GKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGD--DES 151 (621)
Q Consensus 87 l~~spdg~~las~~d-~------------~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s--~dg 151 (621)
--++++|.+|+.+.. . .-.|+.+...+... .. +.. .. +..|++++++|+... .++
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~---~~---l~~--~~--~~~~s~~g~~Iy~~~~~~~~ 127 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS---TV---LDP--DP--CIYASLIGNYIYYLHYDTQT 127 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC---EE---EEC--SC--EEEEEEETTEEEEEEESSSS
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc---eE---eec--CC--ccEEEEeCCEEEEEeecCCC
Confidence 346889999988762 2 33555555443211 11 111 11 236778888888776 344
Q ss_pred --cEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCcEEE
Q psy15549 152 --TIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSV-DNTAIMWDVHKGKNLG 228 (621)
Q Consensus 152 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~ 228 (621)
.|...+++.... ..+..+.. ..|+++++.|+-.+. ...|.+.++..+....
T Consensus 128 ~~~Iy~~~~dGs~~----------------------~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~ 181 (302)
T 3s25_A 128 ATSLYRIRIDGEEK----------------------KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL 181 (302)
T ss_dssp CEEEEEEETTSCCC----------------------EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCe----------------------EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEE
Confidence 455555553331 22333322 346778888886665 5788888887665443
Q ss_pred EeccCCcceEEEEEcCCCCEEEEEeCCC--cEEEEEccCc
Q psy15549 229 ILTEHKKFVQGVAWDPKNQYVATLSSDR--SLRTYSIQSK 266 (621)
Q Consensus 229 ~~~~~~~~v~~l~~sp~~~~l~s~~~dg--~i~iwd~~~~ 266 (621)
.+.+ ... ..++|++.+|+.....+ .|..-++...
T Consensus 182 l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 182 FYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP 217 (302)
T ss_dssp EECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred EeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence 3332 222 23569999988766543 4555555443
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.48 E-value=0.63 Score=52.57 Aligned_cols=178 Identities=11% Similarity=0.114 Sum_probs=108.8
Q ss_pred eEEeccccccccceeeccccccccCcEEEEEEccCCCEEEEEcCCceEEEEeccCccccccceeccccccc----CCCeE
Q psy15549 58 IWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRH----QKAVN 133 (621)
Q Consensus 58 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h----~~~V~ 133 (621)
|+++.+...... +. ....|..-.|-. .+.|+..++..|.-|++.... .+...+..| ...|.
T Consensus 90 iFnl~~k~klks-------~~-~~e~VvfWkWis-~~~l~lVT~~aVyHW~~~~~s------~P~k~fdR~~~L~~~QIi 154 (1630)
T 1xi4_A 90 IFNIEMKSKMKA-------HT-MTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGES------QPVKMFDRHSSLAGCQII 154 (1630)
T ss_pred EeehHHhhhhcc-------cc-cCCCceEEEecC-CCeeEEEcCCeEEEeccCCCC------ccHHHHhcchhcccCeeE
Confidence 777776654322 11 123566656653 456777778899999997643 333333333 35677
Q ss_pred EEEECCCCCEEEEEe-------CCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECC---C
Q psy15549 134 VVRFSPNGELLASGD-------DESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSP---T 203 (621)
Q Consensus 134 ~i~~sp~g~~l~s~s-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp---d 203 (621)
.-..+++.++++..| -.|.+.+|.++.+.. +.+.||.+....+.... .
T Consensus 155 nY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s----------------------Q~iegha~~F~~~~~~~~~~~ 212 (1630)
T 1xi4_A 155 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----------------------QPIEGHAASFAQFKMEGNAEE 212 (1630)
T ss_pred EeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc----------------------hhhhHhHhhhheeccCCCCCC
Confidence 778888999877544 357888998876643 45566766554444421 1
Q ss_pred CCEEEEEeC---CCeEEEEECCCC---cEE------EEecc---CCcceEEEEEcCCCCEEEEEeCCCcEEEEEccCcee
Q psy15549 204 STHLISGSV---DNTAIMWDVHKG---KNL------GILTE---HKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKV 268 (621)
Q Consensus 204 ~~~l~s~~~---dg~i~vwd~~~~---~~~------~~~~~---~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 268 (621)
..+++.+.. .+.++|.++... ... ..+.. ...-..++..++.-..+...+.-|.|.+||+.++.+
T Consensus 213 ~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 213 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred ceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 223333322 368899888543 111 11111 122234677777777788889999999999999988
Q ss_pred eeec
Q psy15549 269 ISRA 272 (621)
Q Consensus 269 ~~~~ 272 (621)
+..-
T Consensus 293 i~~~ 296 (1630)
T 1xi4_A 293 IYMN 296 (1630)
T ss_pred hhhc
Confidence 7654
No 335
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.46 E-value=3.6 Score=44.46 Aligned_cols=199 Identities=10% Similarity=0.060 Sum_probs=107.8
Q ss_pred CCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCC
Q psy15549 14 DPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNG 93 (621)
Q Consensus 14 ~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 93 (621)
..|.++....++ .|..|+.+|. . .+|..+..-.. ........|.++.. .+|
T Consensus 63 ~~i~~i~~d~~g------~lWigT~~Gl-~--------------~yd~~~~~f~~-------~~~~~~~~i~~i~~-~~g 113 (758)
T 3ott_A 63 TRIYCGVIIDNT------YLYMGTDNGI-L--------------VYNYRADRYEQ-------PETDFPTDVRTMAL-QGD 113 (758)
T ss_dssp SCEEEEEEETTT------EEEEEETTEE-E--------------EEETTTTEECC-------CSCCCCSCEEEEEE-ETT
T ss_pred ceEEEEEEcCCC------cEEEEeCCCe-E--------------EEeCCCCEEEC-------cccCCCceEEEEEe-cCC
Confidence 358888777776 6666776764 4 45543321110 00111235777654 455
Q ss_pred CEEEEEcCCceEEEEeccCccccccceecccc--cccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCC
Q psy15549 94 ELLASGDDVGKEIWYLTERESGIANVEFASDL--SRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSN 171 (621)
Q Consensus 94 ~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~--~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 171 (621)
. |..++.+++..++...... ...... .-....|.++....+|.+.+ |+..| |..++..+.... .+..
T Consensus 114 ~-lWigt~~Gl~~~~~~~~~~-----~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~-~~~~-- 182 (758)
T 3ott_A 114 T-LWLGALNGLYTYQLQSRKL-----TSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFE-GIPL-- 182 (758)
T ss_dssp E-EEEEETTEEEEEETTTCCE-----EEECHHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEE-EECC--
T ss_pred c-EEEEcCCcceeEeCCCCeE-----EEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceE-EecC--
Confidence 4 4445555888888654321 111000 01234688888887887555 44444 777876654311 0000
Q ss_pred cccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEEcCCCCEEEE
Q psy15549 172 LDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVAT 251 (621)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 251 (621)
..........|.++...+++..|..|+. +-+..+|..+++...........|.++....+|.+.+
T Consensus 183 -------------~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi- 247 (758)
T 3ott_A 183 -------------PVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA- 247 (758)
T ss_dssp -------------CCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-
T ss_pred -------------CCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-
Confidence 0000011234888888777765555664 4588899877654322111234588888888887655
Q ss_pred EeCCCcEEEEEccCcee
Q psy15549 252 LSSDRSLRTYSIQSKKV 268 (621)
Q Consensus 252 ~~~dg~i~iwd~~~~~~ 268 (621)
|+.+ -+.+++..++..
T Consensus 248 gT~~-Gl~~~~~~~~~~ 263 (758)
T 3ott_A 248 GTDN-GLYVYHNDTTPL 263 (758)
T ss_dssp EETT-EEEEECCTTSCC
T ss_pred EeCC-ceeEEecCCCcE
Confidence 4544 477888766543
No 336
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.29 E-value=1.6 Score=41.14 Aligned_cols=147 Identities=10% Similarity=0.062 Sum_probs=73.2
Q ss_pred CCCEEEEEc-C--------CceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeC-C-----CcEEEE
Q psy15549 92 NGELLASGD-D--------VGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDD-E-----STIIVW 156 (621)
Q Consensus 92 dg~~las~~-d--------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~-d-----g~i~vw 156 (621)
++++++.|+ + +.+.+||...... ..+..+......-.++. -++++++.|+. + ..+.+|
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W-----~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~y 170 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW-----GESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVY 170 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEE-----EECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcE-----eECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEE
Confidence 566666665 2 2367777765532 22222222111222222 35667777765 2 357788
Q ss_pred EccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEECCCCcEEEEec
Q psy15549 157 KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDN-----TAIMWDVHKGKNLGILT 231 (621)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~ 231 (621)
|+.+.. |.....+........++.+ ++++++.|+.++ .+.+||+.+.+-...-.
T Consensus 171 d~~~~~-------------------W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 229 (315)
T 4asc_A 171 DPKKFE-------------------WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA 229 (315)
T ss_dssp ETTTTE-------------------EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred eCCCCe-------------------EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence 876653 2222211111111222333 567777777654 58899998764332211
Q ss_pred --cCCcceEEEEEcCCCCEEEEEeCCC--------------cEEEEEccCcee
Q psy15549 232 --EHKKFVQGVAWDPKNQYVATLSSDR--------------SLRTYSIQSKKV 268 (621)
Q Consensus 232 --~~~~~v~~l~~sp~~~~l~s~~~dg--------------~i~iwd~~~~~~ 268 (621)
........+.+ +++.++.|+.++ .+.+||+.+.+-
T Consensus 230 ~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 230 FPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred CCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence 11111222222 467777777532 367788877653
No 337
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.14 E-value=1.3 Score=44.36 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=31.4
Q ss_pred cEEEEEEcCCcEEEEeCCC-Ccee----EEEecccccceEEEEEcCCCC-eEEEEeCCCcE
Q psy15549 382 RIVIAVATENNILLYDTQH-ASPF----AFIANIHYTKLTDITWSSDGK-VLIASSTDGYC 436 (621)
Q Consensus 382 ~~l~~~~~dg~i~iwd~~~-~~~~----~~~~~~h~~~v~~~~~spdg~-~l~s~s~dg~i 436 (621)
..+++.-..+.|....+.. +... ..+.. ....+.+|++.|||. ++++.+..|.|
T Consensus 370 ~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~-~~~R~~dv~~gpDG~~Lyv~~d~~G~i 429 (454)
T 1cru_A 370 TLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFK-SNNRYRDVIASPDGNVLYVLTDTAGNV 429 (454)
T ss_dssp EEEEEBSSSCCEEEEEECTTSSSEEEEEEEESC-CSSCEEEEEECTTSSCEEEEECSSCCE
T ss_pred cEEEeecCCCEEEEEEECCCCCeeeeeeeeecc-cCCCceeEEECCCCCEEEEEECCCCCC
Confidence 3444433456777777664 3211 12222 235899999999997 66655555544
No 338
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.04 E-value=2.3 Score=39.89 Aligned_cols=147 Identities=15% Similarity=0.172 Sum_probs=74.3
Q ss_pred CCCEEEEEcC----------CceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCC-----CcEEEE
Q psy15549 92 NGELLASGDD----------VGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE-----STIIVW 156 (621)
Q Consensus 92 dg~~las~~d----------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~d-----g~i~vw 156 (621)
++.+++.|+. +.+.+||...... ..+..+.........+.+ ++++++.|+.+ ..+.+|
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W-----~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~y 142 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW-----SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERY 142 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEE-----EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeE-----eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEE
Confidence 5666666653 3466777665532 222222222222222333 56677777643 357778
Q ss_pred EccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcEEEE--
Q psy15549 157 KQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVD-----NTAIMWDVHKGKNLGI-- 229 (621)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~d-----g~i~vwd~~~~~~~~~-- 229 (621)
|+.+.+ |.....+........++.+ ++.+++.|+.+ ..+.+||+.+.+-...
T Consensus 143 d~~~~~-------------------W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 201 (308)
T 1zgk_A 143 EPERDE-------------------WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA 201 (308)
T ss_dssp ETTTTE-------------------EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC
T ss_pred CCCCCe-------------------EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC
Confidence 876653 2211111111112222333 56677777654 4688999877643221
Q ss_pred eccCCcceEEEEEcCCCCEEEEEeCC-----CcEEEEEccCcee
Q psy15549 230 LTEHKKFVQGVAWDPKNQYVATLSSD-----RSLRTYSIQSKKV 268 (621)
Q Consensus 230 ~~~~~~~v~~l~~sp~~~~l~s~~~d-----g~i~iwd~~~~~~ 268 (621)
+.........+.+ +++.++.|+.+ ..+.+||+.+.+-
T Consensus 202 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 202 MNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 1111111222233 56777777664 4688999887654
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.40 E-value=3.9 Score=43.58 Aligned_cols=153 Identities=14% Similarity=0.198 Sum_probs=80.0
Q ss_pred CCCEEEEEc-C------CceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCC--cEEEEEccCCC
Q psy15549 92 NGELLASGD-D------VGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDES--TIIVWKQKTDQ 162 (621)
Q Consensus 92 dg~~las~~-d------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg--~i~vwd~~~~~ 162 (621)
++++++.|+ + +.+.+||...... ..+..+......- +++...++.+++.|+.++ .+.+||..+..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W-----~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREW-----SMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEE-----EECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcE-----EECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence 777777776 2 2356777666532 2222222111111 233324788888887654 68888887754
Q ss_pred CCCCCCCCCcccccccccceeeeee---ecCCCCCeEEEEECCC-CCEEEEEeC--C-----CeEEEEECCCCcE-----
Q psy15549 163 DLPEFPSSNLDEENVNKEHWIVTKI---LRGHLEDVYDISWSPT-STHLISGSV--D-----NTAIMWDVHKGKN----- 226 (621)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~i~~spd-~~~l~s~~~--d-----g~i~vwd~~~~~~----- 226 (621)
|..... .........++.+..+ +++++.|+. + ..+.+||+.+..-
T Consensus 525 -------------------W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~ 585 (695)
T 2zwa_A 525 -------------------FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPIT 585 (695)
T ss_dssp -------------------EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEE
T ss_pred -------------------eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceE
Confidence 221111 1111122233455544 667777765 2 4688999987761
Q ss_pred EEEecc---CCcceEEEEEcCCCCEEEEEeCC--------CcEEEEEccCceee
Q psy15549 227 LGILTE---HKKFVQGVAWDPKNQYVATLSSD--------RSLRTYSIQSKKVI 269 (621)
Q Consensus 227 ~~~~~~---~~~~v~~l~~sp~~~~l~s~~~d--------g~i~iwd~~~~~~~ 269 (621)
-..+.. ....-.+++...+++.++.|+.+ ..|.+||+.+.+-.
T Consensus 586 W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 586 VIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 111111 11111123333336777777743 45899999887644
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.35 E-value=3.4 Score=38.91 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=35.0
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEE--eccCCcceEEEEEcCCCCEEEEEeCC--------------CcEEEE
Q psy15549 203 TSTHLISGSVD-----NTAIMWDVHKGKNLGI--LTEHKKFVQGVAWDPKNQYVATLSSD--------------RSLRTY 261 (621)
Q Consensus 203 d~~~l~s~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~~~d--------------g~i~iw 261 (621)
++++++.|+.+ ..+.+||+.+.+-... +.........+. -+++.++.|+.+ ..+.+|
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~y 283 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY 283 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEE
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEE
Confidence 56777777653 3577899877653322 111111112222 246667776653 357788
Q ss_pred EccCcee
Q psy15549 262 SIQSKKV 268 (621)
Q Consensus 262 d~~~~~~ 268 (621)
|+.+.+-
T Consensus 284 d~~~~~W 290 (318)
T 2woz_A 284 EDDKKEW 290 (318)
T ss_dssp ETTTTEE
T ss_pred eCCCCEe
Confidence 8877654
No 341
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.04 E-value=7.9 Score=41.72 Aligned_cols=224 Identities=14% Similarity=0.118 Sum_probs=124.1
Q ss_pred CCCeEEEeccccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccC
Q psy15549 13 RDPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPN 92 (621)
Q Consensus 13 ~~~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 92 (621)
...|.||.-..+| +|-.|..+|..+ | |-..-..... . -......|.++....+
T Consensus 21 ~n~V~~I~qD~~G------~lWigT~~GL~r-y--------------DG~~~~~~~~----~--~~~~~~~i~~i~~d~~ 73 (758)
T 3ott_A 21 ASVVSCFLQDSEG------LIWIGSNKGLFS-Y--------------DGYSTQQHFT----Y--GENNNTRIYCGVIIDN 73 (758)
T ss_dssp CCCEEEEEECTTS------CEEEEESSCEEE-E--------------CSSCEEECSC----T--TSTTSSCEEEEEEETT
T ss_pred cceEEEEEECCCC------CEEEEECCCccc-c--------------CCCceEEEEc----c--CCCCCceEEEEEEcCC
Confidence 4579999999888 677777888553 2 2110000000 0 0112356888877777
Q ss_pred CCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCc
Q psy15549 93 GELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNL 172 (621)
Q Consensus 93 g~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 172 (621)
|. |-.|+++++..|+..... ...........|.++.. .+| .|..++.+ -|..+|..+.+.. .+.
T Consensus 74 g~-lWigT~~Gl~~yd~~~~~-------f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~---- 137 (758)
T 3ott_A 74 TY-LYMGTDNGILVYNYRADR-------YEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFD---- 137 (758)
T ss_dssp TE-EEEEETTEEEEEETTTTE-------ECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EEC----
T ss_pred Cc-EEEEeCCCeEEEeCCCCE-------EECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-Eec----
Confidence 64 445556788888876541 11111112235776654 345 45556655 5788887654421 000
Q ss_pred ccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cc----CCcceEEEEEcCCCC
Q psy15549 173 DEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGIL-TE----HKKFVQGVAWDPKNQ 247 (621)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~----~~~~v~~l~~sp~~~ 247 (621)
..........|.++....++.+.+ |+.. -|..++..+++..... .. ....|.++...+++.
T Consensus 138 ------------~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~ 203 (758)
T 3ott_A 138 ------------TRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQ 203 (758)
T ss_dssp ------------HHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTT
T ss_pred ------------cCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCC
Confidence 000001234688888888887555 4544 4778887766533211 11 122478888887777
Q ss_pred EEEEEeCCCcEEEEEccCceeeeecccCCCCCCCccccccccccccccCCcccceeeeeecCCCCeEEec
Q psy15549 248 YVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIAP 317 (621)
Q Consensus 248 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 317 (621)
.|..|+. +-+..+|..+++...... .....|.++....+|.+.+..
T Consensus 204 ~lWigt~-~Gl~~~~~~~~~~~~~~~-----------------------l~~~~i~~i~~d~~g~lWigT 249 (758)
T 3ott_A 204 CVWIGTE-GYLFQYFPSTGQIKQTEA-----------------------FHNNSIKSLALDGNGDLLAGT 249 (758)
T ss_dssp EEEEEEE-EEEEEEETTTTEEEEEEE-----------------------EEEEEEEEEEECTTCCEEEEE
T ss_pred EEEEEEC-CCCeEEcCCCCeEEeccC-----------------------CCCCeEEEEEEcCCCCEEEEe
Confidence 5555654 457888887665322110 012246788888888776654
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.70 E-value=2.3 Score=40.90 Aligned_cols=59 Identities=8% Similarity=0.027 Sum_probs=29.5
Q ss_pred cEEEEeCCCCc--eeEEEecccccceEEEEEcCCCCeEEEEeCCC------cEEEEEecCCcCCcccCCC
Q psy15549 392 NILLYDTQHAS--PFAFIANIHYTKLTDITWSSDGKVLIASSTDG------YCSIISFGDNEIGIPYVPP 453 (621)
Q Consensus 392 ~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg------~i~iw~~~~~~~~~~~~~~ 453 (621)
.+.+||+.+.+ .+..+..... .-.+ ...+++.++.|+.++ .|.++++++++.......+
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~-~~~~--~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRA-YGVS--LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCB-SSEE--EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred eEEEEecCCCceeeCCCCCCCcc-ccee--EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 57789988764 2222221111 1122 234778888888543 3666788888776655443
No 343
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=92.61 E-value=6.8 Score=36.76 Aligned_cols=65 Identities=9% Similarity=0.046 Sum_probs=35.9
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCcEEEEeccCCc-ceEEEEEcCCCCEEEEEeC------CCcEEEEEccCcee
Q psy15549 203 TSTHLISGSVD-------NTAIMWDVHKGKNLGILTEHKK-FVQGVAWDPKNQYVATLSS------DRSLRTYSIQSKKV 268 (621)
Q Consensus 203 d~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~s~~~------dg~i~iwd~~~~~~ 268 (621)
++.+++.|+.+ ..+.+||+.+.+-...-..... .-.+++. .+++.++.|+. -..+.+||+.+.+-
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 56677777753 3578889877653322111111 0112222 35666666664 23588999887654
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.09 E-value=6.1 Score=37.48 Aligned_cols=120 Identities=11% Similarity=0.103 Sum_probs=57.9
Q ss_pred EEEEecCCceEEeeeccCccccccceeEEeccccccccceeecccccccc----CcEEEEEEccCCCEEEEEcCCceEEE
Q psy15549 32 RIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQ----KAVNVVRFSPNGELLASGDDVGKEIW 107 (621)
Q Consensus 32 ~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~----~~V~~l~~spdg~~las~~d~~v~iw 107 (621)
++++++.||.|.-+|..+.+. +|.+........ ....+.. +.+.-+.-..||++.+.....+...|
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~-----~W~~~~~~~~p~-----~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~ 81 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHI-----IWSIEPENFQPL-----IEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL 81 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEE-----EEEECGGGSCCS-----EECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcE-----EEEecCCccCCc-----EEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe
Confidence 888999999999777766554 788765510000 0011111 11111111235555544444444445
Q ss_pred EeccCccccccceecc--cccccCCCeE-EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q psy15549 108 YLTERESGIANVEFAS--DLSRHQKAVN-VVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFP 168 (621)
Q Consensus 108 ~~~~~~~~~~~~~~~~--~~~~h~~~V~-~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~ 168 (621)
..... ..+. .+.+...+|. ..--+..+..+++|+.+|.+...|+.+++.+..+.
T Consensus 82 ~~~~~-------~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 82 PLSIR-------QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp EEEHH-------HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred eeccc-------cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 44322 1110 0111111110 00000134578888888999888888887766554
No 345
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.53 E-value=12 Score=37.33 Aligned_cols=27 Identities=7% Similarity=-0.164 Sum_probs=19.1
Q ss_pred CeEEEeccccccCCcceEEEEecCCceEEee
Q psy15549 15 PVLSVDIQLKQEKDNCYRIVTGGADSHVFDY 45 (621)
Q Consensus 15 ~v~~l~~spd~~~~~~~~l~tg~~dg~v~~~ 45 (621)
.-+.|+|.||+. .+|+++...|.|+++
T Consensus 15 ~P~~~a~~pdG~----~rl~V~er~G~i~~~ 41 (463)
T 2wg3_C 15 QPVGALHSGDGS----QRLFILEKEGYVKIL 41 (463)
T ss_dssp SEEEEECCSSSS----CCEEEEETTTEEEEE
T ss_pred CceEEEECCCCC----eEEEEEeCCceEEEE
Confidence 457999999983 135566678988833
No 346
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=91.50 E-value=10 Score=36.27 Aligned_cols=29 Identities=7% Similarity=-0.012 Sum_probs=17.5
Q ss_pred CCcEEEEEEcCC------cEEEEeCCCCceeEEEe
Q psy15549 380 PYRIVIAVATEN------NILLYDTQHASPFAFIA 408 (621)
Q Consensus 380 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~ 408 (621)
++..++.|+.++ .|.++++.+++.+....
T Consensus 316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 457777777542 46667888877665543
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.42 E-value=16 Score=38.81 Aligned_cols=65 Identities=11% Similarity=0.148 Sum_probs=39.5
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCcEEEE--eccCCcceEEEEEcCCCCEEEEEeCCC--cEEEEEccCcee
Q psy15549 203 TSTHLISGSVD------NTAIMWDVHKGKNLGI--LTEHKKFVQGVAWDPKNQYVATLSSDR--SLRTYSIQSKKV 268 (621)
Q Consensus 203 d~~~l~s~~~d------g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~~~dg--~i~iwd~~~~~~ 268 (621)
++++++.|+.+ ..+.+||+.+.+-... +...... .+++...++..++.|+.++ .+.+||..+.+-
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W 525 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF 525 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCce
Confidence 67777777753 3578999887543221 1111111 2233324788888888754 689999887654
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.36 E-value=2 Score=43.36 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=52.7
Q ss_pred CCeEEEEECCCCCEEEEEeC-CCeEEEEECCCC------cE-------EEEeccCCcceEEEEEcCCCCEEEEEeCCCcE
Q psy15549 193 EDVYDISWSPTSTHLISGSV-DNTAIMWDVHKG------KN-------LGILTEHKKFVQGVAWDPKNQYVATLSSDRSL 258 (621)
Q Consensus 193 ~~v~~i~~spd~~~l~s~~~-dg~i~vwd~~~~------~~-------~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i 258 (621)
.....+.++|||++++.++. +.++.++|++.. +. ...... .-.....+|.++|+...+.--|..|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceE
Confidence 44567899999999888765 789999998742 11 223332 3345678999999555566679999
Q ss_pred EEEEccCc
Q psy15549 259 RTYSIQSK 266 (621)
Q Consensus 259 ~iwd~~~~ 266 (621)
.-|++...
T Consensus 402 vkWni~~a 409 (638)
T 3sbq_A 402 VKWNMEEA 409 (638)
T ss_dssp EEEEHHHH
T ss_pred EEEeccHH
Confidence 99999653
No 349
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=87.94 E-value=1.7 Score=41.37 Aligned_cols=65 Identities=9% Similarity=0.021 Sum_probs=42.9
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEeccC-CcceEEEEE--cCCCCEEEEE--eCCCcEEEEEccCceee
Q psy15549 205 THLISGSVDNTAIMWDVHKGKNLGILTEH-KKFVQGVAW--DPKNQYVATL--SSDRSLRTYSIQSKKVI 269 (621)
Q Consensus 205 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~--sp~~~~l~s~--~~dg~i~iwd~~~~~~~ 269 (621)
.+++.++.||.|.-+|..+|+....+... ..++....- .+.+..++.+ +.||.|..++..+|...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence 47888999999999999999999888654 122222110 0112234433 57999999998877443
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.53 E-value=24 Score=35.12 Aligned_cols=58 Identities=12% Similarity=0.005 Sum_probs=33.9
Q ss_pred CcEEEEEEccCCC--EEEEEcCCceEEEEeccCccccccceecc-ccc-----ccCCCeEEEEECCC
Q psy15549 82 KAVNVVRFSPNGE--LLASGDDVGKEIWYLTERESGIANVEFAS-DLS-----RHQKAVNVVRFSPN 140 (621)
Q Consensus 82 ~~V~~l~~spdg~--~las~~d~~v~iw~~~~~~~~~~~~~~~~-~~~-----~h~~~V~~i~~sp~ 140 (621)
..-..|+|.|||. +|++-..+.|++++...... ...+.-+. .+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3567899999985 77776688787775332110 00111111 111 12467889999996
No 351
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=81.21 E-value=40 Score=32.41 Aligned_cols=99 Identities=11% Similarity=0.105 Sum_probs=56.2
Q ss_pred eEEEEECCCC--cEEEEecc------CCcceEEEEEc---CC----CCEEEEEe-CCCcEEEEEccCceeeeecccCCCC
Q psy15549 215 TAIMWDVHKG--KNLGILTE------HKKFVQGVAWD---PK----NQYVATLS-SDRSLRTYSIQSKKVISRACRSKLP 278 (621)
Q Consensus 215 ~i~vwd~~~~--~~~~~~~~------~~~~v~~l~~s---p~----~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 278 (621)
.|.+||+.+. +.++++.- ....+..+.+. |+ +.+++.+. ..+.|.+||+.+++.-+.+...-.+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5777888887 77766532 23457778877 32 33444443 3678999999998877655322111
Q ss_pred CCCccccccccccccccCCcccceeeeeecCC----CCeEEecc
Q psy15549 279 VDSSHELFDKVVPLFHDDTMKSFFRRLTFSPD----GQLLIAPS 318 (621)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd----g~~l~~~s 318 (621)
.....-..... .+ .....+..++++|+ ++.|+...
T Consensus 204 d~~~~~~i~G~--~~---~~~~Gi~gIaLsp~~~~~~~~LYf~p 242 (381)
T 3q6k_A 204 ERPTKFDYGGK--EY---EFKAGIFGITLGDRDSEGNRPAYYLA 242 (381)
T ss_dssp CSCEEEEETTE--EE---EECCCEEEEEECCCCTTSCCEEEEEE
T ss_pred ccCcceEECCE--Ee---EeccCceEEEecCCcCCCCeEEEEEE
Confidence 10000000000 00 12346789999998 77777655
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=81.20 E-value=33 Score=31.42 Aligned_cols=144 Identities=13% Similarity=0.049 Sum_probs=73.0
Q ss_pred cEEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q psy15549 83 AVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQ 162 (621)
Q Consensus 83 ~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~ 162 (621)
.|..++..... .++.. ++.+..|-......- .... .....|..++...+. .++. . ||.|..|-.....
T Consensus 25 ~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gql----g~p~---~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~G 92 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLALK-GGKVLGWGANLNGQL----TMPA---ATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDG 92 (282)
T ss_dssp SCCEEEECSSE-EEEEE-TTEEEEEECCSSSTT----SCCG---GGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTS
T ss_pred CCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCC----CCCc---cCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCC
Confidence 46666654432 33333 777777765543211 1110 112356677765443 3333 4 8999999766544
Q ss_pred CCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEE
Q psy15549 163 DLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAW 242 (621)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~ 242 (621)
.+..- ..-...|..++...+ +.+.-. +|.|+.|-....-.+.........|..++.
T Consensus 93 qlg~P---------------------~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~ 148 (282)
T 3qhy_B 93 QTTVP---------------------AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDG 148 (282)
T ss_dssp TTCCC---------------------GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEE
T ss_pred CCCCC---------------------cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEc
Confidence 33110 001235777766543 444445 899999976542211111122344666655
Q ss_pred cCCCCEEEEEeCCCcEEEEEccC
Q psy15549 243 DPKNQYVATLSSDRSLRTYSIQS 265 (621)
Q Consensus 243 sp~~~~l~s~~~dg~i~iwd~~~ 265 (621)
.. .+.+... ||.|..|-...
T Consensus 149 G~--~~~~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 149 GV--YTALAVK-NGGVIAWGDNY 168 (282)
T ss_dssp CS--SEEEEEE-TTEEEEEECCT
T ss_pred cc--CEEEEEE-CCEEEEecCCC
Confidence 43 2333334 78888886543
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=80.01 E-value=36 Score=31.15 Aligned_cols=144 Identities=15% Similarity=0.090 Sum_probs=71.2
Q ss_pred cEEEEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q psy15549 83 AVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQ 162 (621)
Q Consensus 83 ~V~~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~ 162 (621)
.|..++...+..+++ . ++.+..|-......- ... ......|..++...+..++ -. ||.|..|-.....
T Consensus 103 ~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gql----g~~---~~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 103 GVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQT----TVP---AEAQSGVTALDGGVYTALA--VK-NGGVIAWGDNYFG 170 (282)
T ss_dssp SEEEEEEETTEEEEE-E-TTEEEEEECCTTSTT----SCC---GGGGSSEEEEEECSSEEEE--EE-TTEEEEEECCTTS
T ss_pred CeEEEECcCCEEEEE-e-CCeEEEecCCCCCcC----CCC---ccCCCCeEEEEcccCEEEE--EE-CCEEEEecCCCCC
Confidence 566666554433333 3 777777765543210 000 0112346666654332222 23 6888888765543
Q ss_pred CCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCcceEEEEE
Q psy15549 163 DLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAW 242 (621)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~ 242 (621)
.+..- ......|..++.-.+. .++. .+|.|+.|-......+..-......|..++.
T Consensus 171 qlg~p---------------------~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~ 226 (282)
T 3qhy_B 171 QTTVP---------------------AEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIAS 226 (282)
T ss_dssp TTSCC---------------------GGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEE
T ss_pred CCCCc---------------------eecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEc
Confidence 33100 0112456666654332 2333 5899999976542222111112234667765
Q ss_pred cCCCCEEEEEeCCCcEEEEEccC
Q psy15549 243 DPKNQYVATLSSDRSLRTYSIQS 265 (621)
Q Consensus 243 sp~~~~l~s~~~dg~i~iwd~~~ 265 (621)
.... .++ .. ||.|..|=...
T Consensus 227 G~~h-~~a-l~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 227 GEWY-SLA-LK-NGKVIAWGSSR 246 (282)
T ss_dssp CSSC-EEE-EE-TTEEEEESTTC
T ss_pred CCCE-EEE-EE-CCEEEEecCCC
Confidence 5432 233 33 99999986544
No 354
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=73.90 E-value=59 Score=30.49 Aligned_cols=177 Identities=10% Similarity=-0.039 Sum_probs=87.9
Q ss_pred CCCeEEEeccc---cccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEE
Q psy15549 13 RDPVLSVDIQL---KQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRF 89 (621)
Q Consensus 13 ~~~v~~l~~sp---d~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 89 (621)
.+.|.++..-+ +.. ++++.+.+|.|+ --.+..-......-.....+... +.+..+..
T Consensus 94 ~e~i~~~~~~~~~~~e~-----~~v~~T~~G~iK--------------r~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~ 153 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAP-----YLVLATRNGLVK--------------KSKLTDFDSNRSGGIVAVNLRDN-DELVGAVL 153 (327)
T ss_dssp TCCEEEEEEESSTTSSS-----EEEEEETTSEEE--------------EEEGGGGCCCCSSCEESCBCCTT-CCEEEEEE
T ss_pred CCEEEEEEEeccCCCCC-----EEEEEcCCCEEE--------------EeEHHHhhccccCceEEEEECCC-CEEEEEEE
Confidence 34565554333 344 999999999998 44443322111111112224443 33444444
Q ss_pred -ccCCCEEEEEcCCceEEEEec--cC---ccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCCC
Q psy15549 90 -SPNGELLASGDDVGKEIWYLT--ER---ESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQD 163 (621)
Q Consensus 90 -spdg~~las~~d~~v~iw~~~--~~---~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~ 163 (621)
+.+..+++....+.+..+... .- +... .-.....+. ....|.++...+++.+|+..+..|.++.-.+..-..
T Consensus 154 ~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a-~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~ 231 (327)
T 3uc1_A 154 CSAGDDLLLVSANGQSIRFSATDEALRPMGRAT-SGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPV 231 (327)
T ss_dssp ECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS-BCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCB
T ss_pred ecCCCEEEEEECCCeEEEEECcccccCcCCcCC-CCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccc
Confidence 444444444556666555554 21 1000 001112232 245577777666677899999999999887655432
Q ss_pred CCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC
Q psy15549 164 LPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHK 223 (621)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~ 223 (621)
...-. ... ....+......+..+....+...++..+.+|.+..++...
T Consensus 232 ~~R~~-----------~G~-~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 232 QGRGG-----------KGV-LTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp CCTTS-----------CCE-ESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred cCcCC-----------CcE-EEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 21100 000 0011111123344444444445666777788887777643
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=72.06 E-value=72 Score=30.67 Aligned_cols=156 Identities=10% Similarity=0.071 Sum_probs=75.9
Q ss_pred cCcEEEEEEcc--CCCEEEEEcCC--ceEEEEeccCccccccceecccccc--------cCCCeEEEEECC-C-CCEEEE
Q psy15549 81 QKAVNVVRFSP--NGELLASGDDV--GKEIWYLTERESGIANVEFASDLSR--------HQKAVNVVRFSP-N-GELLAS 146 (621)
Q Consensus 81 ~~~V~~l~~sp--dg~~las~~d~--~v~iw~~~~~~~~~~~~~~~~~~~~--------h~~~V~~i~~sp-~-g~~l~s 146 (621)
...|.+|++.| .+.+.+.+..+ +..||....++.....+.....+.. +...|.++++.| + ...|..
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 35699999998 56666665544 2245555544332211111000111 123578899987 2 445555
Q ss_pred EeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeee----------------cCCCCCeEEEEECCC-CCEEEE
Q psy15549 147 GDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL----------------RGHLEDVYDISWSPT-STHLIS 209 (621)
Q Consensus 147 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~v~~i~~spd-~~~l~s 209 (621)
+...+.|... ..+... |...... ......+.+|.+.|. ...|..
T Consensus 134 g~~~ggl~~S--~DgG~t-----------------W~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 134 GTSPQGLFRS--TDHGAS-----------------WEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEETTEEEEE--SSTTSB-----------------CEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred EecCCcEEEE--cCCCCC-----------------eEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 5555544433 222211 1111100 012346889999883 445555
Q ss_pred EeCCCeEEEEECCCCcEEEEecc-----C--------CcceEEEEEcCC-CCEEEEEeCCC
Q psy15549 210 GSVDNTAIMWDVHKGKNLGILTE-----H--------KKFVQGVAWDPK-NQYVATLSSDR 256 (621)
Q Consensus 210 ~~~dg~i~vwd~~~~~~~~~~~~-----~--------~~~v~~l~~sp~-~~~l~s~~~dg 256 (621)
+..++.|...+ ..++.-..+.. + ...+.++.++|. ...|+.+...+
T Consensus 195 g~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 195 GMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred EECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 55455444432 22332222211 0 134889999986 35666666544
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.15 E-value=57 Score=36.06 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=33.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeeccc
Q psy15549 236 FVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACR 274 (621)
Q Consensus 236 ~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 274 (621)
.+.+++..++..++++.+.|+++|+|++.+++++.+...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 456777888889999999999999999999999887653
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.44 E-value=38 Score=37.46 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=33.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q psy15549 193 EDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGIL 230 (621)
Q Consensus 193 ~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~ 230 (621)
..+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45778888888899999999999999999999988765
No 358
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=60.27 E-value=1.1e+02 Score=28.42 Aligned_cols=110 Identities=11% Similarity=0.035 Sum_probs=67.0
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy15549 140 NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMW 219 (621)
Q Consensus 140 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vw 219 (621)
+..+|+..+..|.++...+..-...... .. ....+.. ...+..+........++..+.+|.+..+
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~-------------G~-~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~ 177 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSR-------------GV-IVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIF 177 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC-----------------CE-ECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCC-------------cE-EEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence 4668889999999998887654321100 00 0112222 4556655555555678888999999999
Q ss_pred ECCCC---------cEEEEeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy15549 220 DVHKG---------KNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQS 265 (621)
Q Consensus 220 d~~~~---------~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~ 265 (621)
.+..- .....+. ....|.++..-.++..+++.+..|..+...+..
T Consensus 178 ~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 178 NSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 87531 1122222 234555665555566788888999888888754
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=58.86 E-value=1.3e+02 Score=28.83 Aligned_cols=58 Identities=9% Similarity=0.012 Sum_probs=31.2
Q ss_pred CeEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEecc--CC---cceEEEEEcCC-CCEEEEEe
Q psy15549 194 DVYDISWSPT-STHLISGSVDNTAIMWDVHKGKNLGILTE--HK---KFVQGVAWDPK-NQYVATLS 253 (621)
Q Consensus 194 ~v~~i~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~---~~v~~l~~sp~-~~~l~s~~ 253 (621)
.+.++.+.|+ ...|..+...+ |...+ ..++.-..+.. .. ..+.+++++|. ...|+.+.
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEe
Confidence 5889999985 45676666544 44443 23433333321 11 23567888763 34444443
No 360
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=55.94 E-value=1.3e+02 Score=28.03 Aligned_cols=204 Identities=12% Similarity=0.078 Sum_probs=0.0
Q ss_pred ccccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEEccCCCEEEEEcCC
Q psy15549 23 LKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDV 102 (621)
Q Consensus 23 pd~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~d~ 102 (621)
|+.. ++++.+.+|.|+ --.+..-..... ....+..+..-+..+.-+....+|+..+.+
T Consensus 3 ~~e~-----~~v~lT~~G~IK--------------r~~~~~~~~~~~---~~~~lke~D~l~~~~~~~t~d~ll~fT~~G 60 (323)
T 1wp5_A 3 ASED-----VIVTVTKDGYVK--------------RTSLRSYAASNG---QDFAMKDTDRLLAMLEMNTKDVLLLFTNKG 60 (323)
T ss_dssp SCCE-----EEEEEETTCEEE--------------EEEHHHHHHTTT---CCCCCCTTCCEEEEEEEETTSEEEEEETTS
T ss_pred cCCc-----EEEEEeCCCEEE--------------EeEHHHhhhcCc---cccccCCCCEEEEEEEECCCCEEEEEECCC
Q ss_pred ce---EEEEeccCc--cccccceecccccccCCCeEEEEECC--CCCEEEEEeCCCcEEEEEccCCCCCC--CCCCCCcc
Q psy15549 103 GK---EIWYLTERE--SGIANVEFASDLSRHQKAVNVVRFSP--NGELLASGDDESTIIVWKQKTDQDLP--EFPSSNLD 173 (621)
Q Consensus 103 ~v---~iw~~~~~~--~~~~~~~~~~~~~~h~~~V~~i~~sp--~g~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~ 173 (621)
.+ .++++.... ..-..+.....+.....-+..+.... ++.+|+.++..|.++...+..-.... .-
T Consensus 61 r~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G------ 134 (323)
T 1wp5_A 61 NYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKP------ 134 (323)
T ss_dssp EEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSC------
T ss_pred EEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCc------
Q ss_pred cccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC---------CCcEEEEeccCCcceEEEEEcC
Q psy15549 174 EENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVH---------KGKNLGILTEHKKFVQGVAWDP 244 (621)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~---------~~~~~~~~~~~~~~v~~l~~sp 244 (621)
....-......+..+........++..+.+|.+..+... .|.....+.....-+....+.+
T Consensus 135 ----------~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~ 204 (323)
T 1wp5_A 135 ----------LTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITS 204 (323)
T ss_dssp ----------EECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECC
T ss_pred ----------eEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcC
Q ss_pred CCCEEEEEeCCCcEEEEEcc
Q psy15549 245 KNQYVATLSSDRSLRTYSIQ 264 (621)
Q Consensus 245 ~~~~l~s~~~dg~i~iwd~~ 264 (621)
+...|++.+..|..+..++.
T Consensus 205 ~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 205 KDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp TTCEEEEEETTSEEEEEEGG
T ss_pred CCcEEEEEECCCceEEEEHH
No 361
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=55.63 E-value=1.3e+02 Score=28.03 Aligned_cols=170 Identities=9% Similarity=0.023 Sum_probs=90.4
Q ss_pred CcEEEE-EEcc--CCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q psy15549 82 KAVNVV-RFSP--NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWK 157 (621)
Q Consensus 82 ~~V~~l-~~sp--dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd 157 (621)
..|.++ .+.. +..+++..+ .+.++...+..-......-.....+... +.+..+........|+..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 344444 4442 466777766 6667777665422111111122233333 3455554444556788888899888887
Q ss_pred cc--CCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCc-------EEE
Q psy15549 158 QK--TDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGK-------NLG 228 (621)
Q Consensus 158 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~-------~~~ 228 (621)
.. .-.....-... . ....+ .....|.++...+++..|+..+..|.++.-.+.... -+.
T Consensus 174 ~~~~eip~~gr~a~G--------v----~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~ 240 (327)
T 3uc1_A 174 ATDEALRPMGRATSG--------V----QGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL 240 (327)
T ss_dssp CCTTTSCCCCTTSBC--------E----ESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred CcccccCcCCcCCCC--------e----eeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE
Confidence 76 22211110000 0 00112 234557777666666789999999999988764322 122
Q ss_pred Eec--cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy15549 229 ILT--EHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQS 265 (621)
Q Consensus 229 ~~~--~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~ 265 (621)
.++ ...+.+..+....+...++..+.+|.+..++...
T Consensus 241 ~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 241 TVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 222 2133444444444455666677788777776644
No 362
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=54.60 E-value=40 Score=34.70 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=42.2
Q ss_pred CeEEEEECCCCCEEEEEeCC------------CeEEEEECCCCcEEEEeccC-CcceEEEEEcCCCCEEEEE
Q psy15549 194 DVYDISWSPTSTHLISGSVD------------NTAIMWDVHKGKNLGILTEH-KKFVQGVAWDPKNQYVATL 252 (621)
Q Consensus 194 ~v~~i~~spd~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~ 252 (621)
..-.|+|+|.|++++.-..+ ..+.+.+..+++....+... ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45678999999866654432 24566677777766555543 5689999999999988765
No 363
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=48.81 E-value=81 Score=32.14 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=43.4
Q ss_pred CCeEEEEECCCCCEEEEEeC------------CCeEEEEECCCCcEEEEeccC-CcceEEEEEcCCCCEEEEEe
Q psy15549 193 EDVYDISWSPTSTHLISGSV------------DNTAIMWDVHKGKNLGILTEH-KKFVQGVAWDPKNQYVATLS 253 (621)
Q Consensus 193 ~~v~~i~~spd~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~~ 253 (621)
.....|.|.++|.+.+.... ...|..++..+++....+... ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999987774332 125677777778765555432 45789999999999988764
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=48.79 E-value=56 Score=37.01 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeeccc
Q psy15549 237 VQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACR 274 (621)
Q Consensus 237 v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 274 (621)
+.+++..++..++++.+.|+++|||++.+++++.+...
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 44566677889999999999999999999999887653
No 365
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.90 E-value=30 Score=39.26 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=31.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q psy15549 194 DVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGIL 230 (621)
Q Consensus 194 ~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~ 230 (621)
.+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4555666778889999999999999999999988765
No 366
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=44.40 E-value=53 Score=33.45 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=28.5
Q ss_pred cEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEE
Q psy15549 392 NILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIAS 430 (621)
Q Consensus 392 ~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~ 430 (621)
.++.++..+++....+.......++.++|+||++.|+++
T Consensus 510 ~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 510 QMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 567777777776555533334678999999999988776
No 367
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=43.30 E-value=54 Score=33.73 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=29.5
Q ss_pred cEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEE
Q psy15549 392 NILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIAS 430 (621)
Q Consensus 392 ~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~ 430 (621)
.+.+.+..+++..+.+.......++.++|+||++.|+..
T Consensus 510 ~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 510 QMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 456667777776666654556789999999999987765
No 368
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=42.24 E-value=1.1e+02 Score=32.08 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=29.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Q psy15549 194 DVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILT 231 (621)
Q Consensus 194 ~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 231 (621)
.|.++.+ +..++++-+.|.++|+|++.+++++....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4666555 36799999999999999999999877653
No 369
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=41.21 E-value=2.5e+02 Score=26.91 Aligned_cols=154 Identities=12% Similarity=0.123 Sum_probs=81.2
Q ss_pred cceeEEeccc--cccccceeeccccccccCcEEEEEEc---cC----CCEEEEEc--CCceEEEEeccCcccccc---ce
Q psy15549 55 TGKIWYLTER--ESGIANVEFASDLSRHQKAVNVVRFS---PN----GELLASGD--DVGKEIWYLTERESGIAN---VE 120 (621)
Q Consensus 55 ~~~iw~~~~~--~~~~~~~~~~~~~~~h~~~V~~l~~s---pd----g~~las~~--d~~v~iw~~~~~~~~~~~---~~ 120 (621)
.+-+||+.+. +..+ .+.+-.........+..+++. |+ +.++..+. ..++.|+|+..+..-... +.
T Consensus 124 kLv~~DL~t~~~~li~-~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVV-RYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEE-EEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred eEEEEECCCCCceeEE-EEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 3447888877 4332 233322222234678888887 22 33444443 677999998876421100 00
Q ss_pred e----ccccccc----CCCeEEEEECCC----CCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeee
Q psy15549 121 F----ASDLSRH----QKAVNVVRFSPN----GELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188 (621)
Q Consensus 121 ~----~~~~~~h----~~~V~~i~~sp~----g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (621)
. ...+.+. ...|..|+++|+ ++.|..+...+ -++|.+.+......- . ... .+.+
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~----~------~~~---v~~~ 268 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKG----G------KLN---PELL 268 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTT----C------CCC---CEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcc----h------hhc---eEEe
Confidence 0 0011111 247889999997 77777766554 344544432111000 0 000 0111
Q ss_pred --cCCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEECCC
Q psy15549 189 --RGHLEDVYDISWS-PTSTHLISGSVDNTAIMWDVHK 223 (621)
Q Consensus 189 --~~~~~~v~~i~~s-pd~~~l~s~~~dg~i~vwd~~~ 223 (621)
.+....-..+++. .+|.++++--....|..|+..+
T Consensus 269 G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 269 GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 1222445566775 5777777777788999999865
No 370
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=41.12 E-value=2.4e+02 Score=26.86 Aligned_cols=121 Identities=10% Similarity=-0.012 Sum_probs=63.8
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEe
Q psy15549 132 VNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGS 211 (621)
Q Consensus 132 V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~ 211 (621)
|..++. -....+.-..||.|..|-......+..-.. .....+..........+..++++.-..+.+.-.
T Consensus 55 i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~---------~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~ 123 (389)
T 3kci_A 55 PVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGT---------ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALS 123 (389)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSS---------CCEEEEEECGGGTTSCEEEEEECTTCSEEEEEE
T ss_pred eEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCc---------CCccCCEEcccccCCceeEEEECcCCCeEEEEc
Confidence 444443 234555567789999997544332211000 000001111112233456667776667777788
Q ss_pred CCCeEEEEECCCC-----------cEEEEecc-CCcceEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy15549 212 VDNTAIMWDVHKG-----------KNLGILTE-HKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQS 265 (621)
Q Consensus 212 ~dg~i~vwd~~~~-----------~~~~~~~~-~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~ 265 (621)
.+|.|+.|-.... .....+.. ....|..++.. ..+.+....+|.|..|-...
T Consensus 124 ~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~ 187 (389)
T 3kci_A 124 SEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGR 187 (389)
T ss_dssp TTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCG
T ss_pred CCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCC
Confidence 8999999965321 11112221 12246555554 45666677899999997543
No 371
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=39.71 E-value=3.8e+02 Score=28.66 Aligned_cols=26 Identities=4% Similarity=-0.111 Sum_probs=17.3
Q ss_pred CCCeEEEeccccccCCcceEEEEecCCceE
Q psy15549 13 RDPVLSVDIQLKQEKDNCYRIVTGGADSHV 42 (621)
Q Consensus 13 ~~~v~~l~~spd~~~~~~~~l~tg~~dg~v 42 (621)
.+.|.+|+++|... ..++++...+.|
T Consensus 14 ~g~i~~i~~~p~~~----~~~~a~~~~ggv 39 (789)
T 1sqj_A 14 GGYITGIVAHPKTK----DLLYARTDIGGA 39 (789)
T ss_dssp CSCEEEEEECSSST----TCEEEEESSSCE
T ss_pred CCcEEEEEECCCCC----CEEEEEecCCCE
Confidence 45899999999753 255555555543
No 372
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=36.06 E-value=4.1e+02 Score=27.99 Aligned_cols=95 Identities=7% Similarity=0.031 Sum_probs=48.4
Q ss_pred cCCcEEEEeCCCC-------ceeEE-EecccccceEEEEEcCCCCeEEEEeCCCc--EEEEEecCCc-CCcc-cCCC-CC
Q psy15549 389 TENNILLYDTQHA-------SPFAF-IANIHYTKLTDITWSSDGKVLIASSTDGY--CSIISFGDNE-IGIP-YVPP-SG 455 (621)
Q Consensus 389 ~dg~i~iwd~~~~-------~~~~~-~~~~h~~~v~~~~~spdg~~l~s~s~dg~--i~iw~~~~~~-~~~~-~~~~-~~ 455 (621)
..+.|...|+.++ ..... +.......+..+.|..+ .++++...++. |.++++.++. .... +..+ .+
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~ 396 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN 396 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe
Confidence 3466777776653 12222 32223456888999876 56667777765 5666666664 2233 3333 22
Q ss_pred cccccCCCCCCCCcc----cCCCcccHHHhccc
Q psy15549 456 EESKENDPTKGEPVR----SEDKPRSAEQAKGE 484 (621)
Q Consensus 456 ~~~~~~~~~~~~~~~----s~~~~~~~~~w~~~ 484 (621)
.+......+++..++ +...+..+...+..
T Consensus 397 ~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 397 AIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp CEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 333333344444322 22445555555443
No 373
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=35.80 E-value=49 Score=34.76 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=30.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEccCceeeeeccc
Q psy15549 236 FVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACR 274 (621)
Q Consensus 236 ~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 274 (621)
.|.++.+ +..++++.+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555544 378999999999999999999998887654
No 374
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=32.09 E-value=1.6e+02 Score=22.15 Aligned_cols=61 Identities=7% Similarity=-0.008 Sum_probs=33.9
Q ss_pred CcEEEEEEcCCcEEEEeCCCCceeEEEecccccceEEEEEcCCCCeEEEEeCCCcEEEEEecC
Q psy15549 381 YRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSIISFGD 443 (621)
Q Consensus 381 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~s~dg~i~iw~~~~ 443 (621)
+.+.+....||.+.+|+...+..+-.........-..+.+..+|.+++.. .++.+ +|.-.+
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d-~~~~~-iW~S~t 84 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITD-DRLNT-VFVSNT 84 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEEC-TTSCE-EEECSC
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEEC-CCCCE-EEECCC
Confidence 35555566778888877643333332211111223467788888876654 34554 788654
No 375
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=31.94 E-value=4.8e+02 Score=27.49 Aligned_cols=29 Identities=14% Similarity=-0.098 Sum_probs=20.0
Q ss_pred EEEEE-EccCCCEEEEEc-CC-----ceEEEEeccC
Q psy15549 84 VNVVR-FSPNGELLASGD-DV-----GKEIWYLTER 112 (621)
Q Consensus 84 V~~l~-~spdg~~las~~-d~-----~v~iw~~~~~ 112 (621)
...+. ++|++++++.+- .+ .++++|+.++
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~ 166 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKK 166 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTT
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcC
Confidence 34455 899999887642 22 3688998877
No 376
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=31.20 E-value=3.1e+02 Score=25.15 Aligned_cols=170 Identities=11% Similarity=0.031 Sum_probs=86.7
Q ss_pred CcEEEEEE-c--cCCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q psy15549 82 KAVNVVRF-S--PNGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWK 157 (621)
Q Consensus 82 ~~V~~l~~-s--pdg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd 157 (621)
..|.++.. . .++.+++..+ .|.++...+..-............+..+ +.+..+........|+..+.+|.+..+.
T Consensus 95 e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~ 173 (307)
T 1zi0_A 95 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFK 173 (307)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEE
Confidence 34555433 2 3455555555 7777777664321111111122223334 4555555544555777888889888887
Q ss_pred ccCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCc---------EEE
Q psy15549 158 QKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGK---------NLG 228 (621)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~~---------~~~ 228 (621)
...-.....-.... ....+ .....|.++....++..|++.+..|.++-.++.... ...
T Consensus 174 ~~~v~~~gr~a~Gv------------~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~ 240 (307)
T 1zi0_A 174 ESSVRAMGCNTTGV------------RGIRL-GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISI 240 (307)
T ss_dssp GGGSCBCCTTCCCE------------ECCCC-CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESS
T ss_pred HHHcCccCCCCCCe------------EeEEe-CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEee
Confidence 65433221110000 00111 233456666655556678888999999888774211 111
Q ss_pred EeccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy15549 229 ILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQS 265 (621)
Q Consensus 229 ~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~iwd~~~ 265 (621)
.+....+.+..+....+...++..+.+|.+.-+.+..
T Consensus 241 ~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 241 KVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp CCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 2222234454444433445566677777766666544
No 377
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=30.98 E-value=3e+02 Score=24.83 Aligned_cols=169 Identities=8% Similarity=-0.099 Sum_probs=90.0
Q ss_pred cCcEEEEEEcc-CCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q psy15549 81 QKAVNVVRFSP-NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQ 158 (621)
Q Consensus 81 ~~~V~~l~~sp-dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~ 158 (621)
...|..+.... +..+++..+ ++.++...+..-. ....-.....+.. .+.+..+........|+..+..|.+..+..
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence 34555554321 456777766 6667777665431 1001111222332 245555555555668888889999888876
Q ss_pred cCCCCCCCCCCCCcccccccccceeeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC-------cEEEEec
Q psy15549 159 KTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKG-------KNLGILT 231 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~ 231 (621)
..-.....-... . ....+. ....|..+...+++..++..+..|.++...+... +-+..+
T Consensus 145 ~eip~~gR~a~G-----------v-~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i- 210 (276)
T 3no0_A 145 REVPPSTPGARG-----------V-QGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS- 210 (276)
T ss_dssp GGSCBCCTTCCC-----------E-ECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-
T ss_pred hhCCCcCCCCCC-----------E-EEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-
Confidence 543322110000 0 001122 2345666555555678889999999998887532 222333
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCcEEE--EEccC
Q psy15549 232 EHKKFVQGVAWDPKNQYVATLSSDRSLRT--YSIQS 265 (621)
Q Consensus 232 ~~~~~v~~l~~sp~~~~l~s~~~dg~i~i--wd~~~ 265 (621)
...+.+..+....+...++..+.+|.+.. ++...
T Consensus 211 ~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 211 GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 23344444433333445666777887777 77644
No 378
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=27.14 E-value=3.5e+02 Score=24.37 Aligned_cols=128 Identities=12% Similarity=-0.030 Sum_probs=65.4
Q ss_pred CCCCeEEEeccc--cccCCcceEEEEecCCceEEeeeccCccccccceeEEeccccccccceeeccccccccCcEEEEEE
Q psy15549 12 NRDPVLSVDIQL--KQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRF 89 (621)
Q Consensus 12 h~~~v~~l~~sp--d~~~~~~~~l~tg~~dg~v~~~d~~~~~~~~~~~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 89 (621)
..+.|.++.. + +.. +++..+.+|.++ -..+..-. ....-.....+... +.+..+..
T Consensus 66 ~~e~i~~v~~-~~~~~~-----~~v~~T~~G~iK--------------r~~l~~~~-~~~~G~~~i~lkeg-D~l~~~~~ 123 (276)
T 3no0_A 66 REEKIVGAFI-REKFGN-----RLLLATKKGYVK--------------KIPLAEFE-YKAQGMPIIKLTEG-DEVVSIAS 123 (276)
T ss_dssp TTCCEEEEEE-GGGSCS-----EEEEEETTSEEE--------------EEEGGGTT-TCSTTEECSCCCTT-CCEEEEEE
T ss_pred CCCEEEEEEC-CcCCCC-----EEEEEeCCCEEE--------------EEEHHHhh-hhcCCeEEEecCCC-CEEEEEEE
Confidence 3456666643 3 344 899999999998 44443321 11000011123332 34555544
Q ss_pred ccCCCEEEEEc-CCceEEEEeccCcccc--ccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q psy15549 90 SPNGELLASGD-DVGKEIWYLTERESGI--ANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWKQKTDQ 162 (621)
Q Consensus 90 spdg~~las~~-d~~v~iw~~~~~~~~~--~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd~~~~~ 162 (621)
..+...|+..+ .+.+..+....-.... ..-.....+.. ...|.++...+++.+|+..+..|.++...+..-.
T Consensus 124 ~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~ 198 (276)
T 3no0_A 124 SVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIP 198 (276)
T ss_dssp CCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSC
T ss_pred eCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcc
Confidence 44444555544 5555555543211000 00011112322 2456666555566788899999999988876543
No 379
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=25.94 E-value=4.3e+02 Score=25.06 Aligned_cols=80 Identities=13% Similarity=0.050 Sum_probs=42.0
Q ss_pred CcEEEEE-Ecc--CCCEEEEEc-CCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q psy15549 82 KAVNVVR-FSP--NGELLASGD-DVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDESTIIVWK 157 (621)
Q Consensus 82 ~~V~~l~-~sp--dg~~las~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~s~dg~i~vwd 157 (621)
..|.++. +.. ++.+|+.++ .|.++...+..-......-.....+.. .+.+..+........|+..+..|.+..+.
T Consensus 99 e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~ 177 (370)
T 3l6v_A 99 ERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFG 177 (370)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEE
Confidence 3455443 322 345666666 666777765432211111122223333 34455555545556788888889888887
Q ss_pred ccCCC
Q psy15549 158 QKTDQ 162 (621)
Q Consensus 158 ~~~~~ 162 (621)
...-.
T Consensus 178 ~~~v~ 182 (370)
T 3l6v_A 178 ESTVR 182 (370)
T ss_dssp GGGSC
T ss_pred ccccC
Confidence 65433
No 380
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=22.57 E-value=2.4e+02 Score=20.87 Aligned_cols=46 Identities=9% Similarity=0.287 Sum_probs=28.2
Q ss_pred EEEEccCCCEEEEEcCCceEEEEeccCccccccceecccccccCCCeEEEEECCCCCEEEEE
Q psy15549 86 VVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASG 147 (621)
Q Consensus 86 ~l~~spdg~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~g~~l~s~ 147 (621)
.+.+..||.+++...++. .+|...... ......+....+|++++.+
T Consensus 54 ~L~l~~dGnLvL~d~~~~-~vWss~t~~---------------~~~~~~l~L~ddGNlVly~ 99 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDSSGR-SLWASHSTR---------------GSGNYILILQDDGNVIIYG 99 (105)
T ss_dssp EEEECTTSCEEEECTTCC-EEEECCCCC---------------CSSCEEEEECTTSCEEEEE
T ss_pred EEEEeCCccEEEECCCcE-EEEEecCCC---------------CCCCEEEEEeCCCeEEEEC
Confidence 477889999888765544 578765321 0112235566777777664
No 381
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=21.69 E-value=7.5e+02 Score=26.33 Aligned_cols=64 Identities=13% Similarity=0.208 Sum_probs=32.6
Q ss_pred cEEEEEEccC-CCEEEEEcCCceEEEEeccCccccccceeccccc---ccCCCeEEEEECC-CCCEEEEEeCC
Q psy15549 83 AVNVVRFSPN-GELLASGDDVGKEIWYLTERESGIANVEFASDLS---RHQKAVNVVRFSP-NGELLASGDDE 150 (621)
Q Consensus 83 ~V~~l~~spd-g~~las~~d~~v~iw~~~~~~~~~~~~~~~~~~~---~h~~~V~~i~~sp-~g~~l~s~s~d 150 (621)
.+..++++|. ...+..+... -.||....++... +.+..+. .....+..+.+.| ++..++.+..+
T Consensus 122 ~~~~iav~p~~~~~v~~g~~~-~gl~~S~DgG~TW---~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 122 NGERLAVNPFNSNEVWMGTRT-EGIWKSSDRAKTW---TNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp SCCCEEEETTEEEEEEEECSS-SCEEEESSTTSSC---EEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred ceeEEEEcCCCCCEEEEEecc-CCEEEECCCCccc---CCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 3566788774 3455555422 2356655554322 2222111 1124578899988 44456555544
Done!