RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15549
(621 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 121 bits (306), Expect = 9e-31
Identities = 92/360 (25%), Positives = 141/360 (39%), Gaps = 83/360 (23%)
Query: 77 LSRHQKAVNVVRFSPNGELLASG--DDVGKEIWYLTERESGIANVEFASDLSRHQKAVNV 134
L H V V FSP+G+LLA+G D K +W L E H V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIK-VWDLETGELLRTLKG-------HTGPVRD 56
Query: 135 VRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLED 194
V S +G LASG + TI +W +T + + L GH
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGE---------------------CVRTLTGHTSY 95
Query: 195 VYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSS 254
V +++SP L S S D T +WDV GK L L H +V VA+ P +VA+ S
Sbjct: 96 VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ 155
Query: 255 DRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLL 314
D +++ + +++ K + L H + S + FSPDG+ L
Sbjct: 156 DGTIKLWDLRTGKCV-------------ATL------TGHTGEVNS----VAFSPDGEKL 192
Query: 315 IAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPVLFELKPSDDK 374
++ S SD T I + + T CL +L+ + V S D
Sbjct: 193 LSSS-----SDGT---IKLWDLSTGKCLG-------TLRGHENGVNSV------AFSPDG 231
Query: 375 PLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDG 434
++ + + + I ++D + ++ H +T + WS DGK L + S DG
Sbjct: 232 -------YLLASGSEDGTIRVWDLRTGECVQTLSG-HTNSVTSLAWSPDGKRLASGSADG 283
Score = 114 bits (288), Expect = 3e-28
Identities = 66/251 (26%), Positives = 98/251 (39%), Gaps = 57/251 (22%)
Query: 14 DPVLSVDIQLKQEKDNCYRIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEF 73
V SV + + + D KT K+W + +
Sbjct: 94 SYVSSVAF-----SPDGRILSSSSRD--------------KTIKVW-------DVETGKC 127
Query: 74 ASDLSRHQKAVNVVRFSPNGELLASG--DDVGKEIWYLTERESGIANVEFASDLSRHQKA 131
+ L H VN V FSP+G +AS D K +W L +A L+ H
Sbjct: 128 LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK-LWDLRT-GKCVAT------LTGHTGE 179
Query: 132 VNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGH 191
VN V FSP+GE L S + TI +W T + LRGH
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK---------------------CLGTLRGH 218
Query: 192 LEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVAT 251
V +++SP L SGS D T +WD+ G+ + L+ H V +AW P + +A+
Sbjct: 219 ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278
Query: 252 LSSDRSLRTYS 262
S+D ++R +
Sbjct: 279 GSADGTIRIWD 289
Score = 112 bits (283), Expect = 1e-27
Identities = 70/286 (24%), Positives = 112/286 (39%), Gaps = 73/286 (25%)
Query: 32 RIVTGGADSHVFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP 91
+ +G +D KT ++W L E L+ H V+ V FSP
Sbjct: 65 YLASGSSD--------------KTIRLWDLE-------TGECVRTLTGHTSYVSSVAFSP 103
Query: 92 NGELLASGDDVGK-EIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELLASGDDE 150
+G +L+S ++W + + + L H VN V FSP+G +AS +
Sbjct: 104 DGRILSSSSRDKTIKVW-------DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156
Query: 151 STIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLEDVYDISWSPTSTHLISG 210
TI +W +L L GH +V +++SP L+S
Sbjct: 157 GTIKLW--------------DLRTGKCVAT-------LTGHTGEVNSVAFSPDGEKLLSS 195
Query: 211 SVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVIS 270
S D T +WD+ GK LG L H+ V VA+ P +A+ S D ++R + +++ +
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE--- 252
Query: 271 RACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRRLTFSPDGQLLIA 316
C L S H + L +SPDG+ L +
Sbjct: 253 --CVQTL---SGHT---------------NSVTSLAWSPDGKRLAS 278
Score = 92.0 bits (229), Expect = 1e-20
Identities = 62/250 (24%), Positives = 106/250 (42%), Gaps = 52/250 (20%)
Query: 185 TKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDP 244
+ L+GH V +++SP L +GS D T +WD+ G+ L L H V+ VA
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61
Query: 245 KNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDDTMKSFFRR 304
Y+A+ SSD+++R + +++ + + L H + S
Sbjct: 62 DGTYLASGSSDKTIRLWDLETGECV-------------RTLTG------HTSYVSS---- 98
Query: 305 LTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCLPSLQYYSVAVKCCPV 364
+ FSPDG++L + S D T I V V T CL +L+ ++ V
Sbjct: 99 VAFSPDGRILSSSS-----RDKT---IKVWDVETG-------KCLTTLRGHTDWVNSVAF 143
Query: 365 LFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIANIHYTKLTDITWSSDG 424
S D V + + + I L+D + A + H ++ + +S DG
Sbjct: 144 ------SPDG-------TFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDG 189
Query: 425 KVLIASSTDG 434
+ L++SS+DG
Sbjct: 190 EKLLSSSSDG 199
Score = 30.8 bits (70), Expect = 2.2
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 384 VIAVATENN-ILLYDTQHASPFAFIANIHYTKLTDITWSSDGKVLIASSTDGYCSI 438
++A + + I ++D + + H + D+ S+DG L + S+D +
Sbjct: 23 LLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRL 77
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 82.4 bits (202), Expect = 1e-16
Identities = 93/389 (23%), Positives = 151/389 (38%), Gaps = 76/389 (19%)
Query: 75 SDLSRHQKAVNVVRFSPNGELLASGDDVGK-EIWYLTERESGIANVEFASDLSRHQKAVN 133
L H+ ++ + FSP+GELL SG G ++W L E I ++E D S
Sbjct: 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSS----VSK 114
Query: 134 VVRFSPNGE--LLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGH 191
+ SP+G LLAS + T+ +W T + + L GH
Sbjct: 115 LALSSPDGNSILLASSSLDGTVKLWDLSTP--------------------GKLIRTLEGH 154
Query: 192 LEDVYDISWSPTSTHLISGS-VDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQ-YV 249
E V +++SP L SGS +D T +WD+ GK L L H V +A+ P +
Sbjct: 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214
Query: 250 ATLSSDRSLRTYSIQSKKVISRACRSKLPV-----------------DSSHELFD---KV 289
A+ SSD ++R + + + K++ D + L+D
Sbjct: 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSS 274
Query: 290 VPLFHDDTMKSFFRRLTFSPDGQLLIAPSGCLENSDSTRKPISVTHVFTRACLNKPAVCL 349
L S + FSPDG+LL + S SD T V +
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGS-----SDGT--------VRLWDLETGKLLSS 321
Query: 350 PSLQYYSVAVKCCPVLFELKPSDDKPLFKLPYRIVIAVATENNILLYDTQHASPFAFIAN 409
+L+ + V L S D +V + + I L+D + P +
Sbjct: 322 LTLKGHEGPVSS------LSFSPD------GSLLVSGGSDDGTIRLWDLRTGKPLKTL-- 367
Query: 410 IHYTKLTDITWSSDGKVLIASSTDGYCSI 438
++ + +++S DG+V+ + STDG +
Sbjct: 368 EGHSNVLSVSFSPDGRVVSSGSTDGTVRL 396
Score = 71.3 bits (173), Expect = 5e-13
Identities = 61/235 (25%), Positives = 95/235 (40%), Gaps = 31/235 (13%)
Query: 72 EFASDLSRHQKAVNVVRFSPNGELLASGDDVGK-EIWYLTERESGIANVEFASDLSRHQK 130
S LS H +V V FSP+G LLASG G +W L S + LS H
Sbjct: 233 LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT------LSGHSS 285
Query: 131 AVNVVRFSPNGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVN-----KEHWIVT 185
+V V FSP+G+LLASG + T+ +W +T + L + + +V+
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345
Query: 186 ------------------KILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWDVHKGKNL 227
+V +S+SP + SGS D T +WD+ G L
Sbjct: 346 GGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405
Query: 228 GILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSS 282
L H V + + P + +A+ SSD ++R + +++ + S
Sbjct: 406 RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASK 460
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 47.3 bits (113), Expect = 2e-07
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 182 WIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWD 220
+ + L+GH V +++SP L SGS D T +WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 40.8 bits (96), Expect = 3e-05
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 125 LSRHQKAVNVVRFSPNGELLASGDDESTIIVWK 157
L H V V FSP+G LLASG D+ T+ VW
Sbjct: 7 LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 37.3 bits (87), Expect = 5e-04
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 224 GKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLR 259
GK L L H V VA+ P +A+ S D ++R
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVR 36
Score = 31.9 bits (73), Expect = 0.049
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 77 LSRHQKAVNVVRFSPNGELLASGDD 101
L H V V FSP+G LLASG D
Sbjct: 7 LKGHTGPVTSVAFSPDGNLLASGSD 31
Score = 29.2 bits (66), Expect = 0.46
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 411 HYTKLTDITWSSDGKVLIASSTDGYCSI 438
H +T + +S DG +L + S DG +
Sbjct: 10 HTGPVTSVAFSPDGNLLASGSDDGTVRV 37
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 46.9 bits (112), Expect = 2e-07
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 182 WIVTKILRGHLEDVYDISWSPTSTHLISGSVDNTAIMWD 220
+ K L+GH V +++SP +L SGS D T +WD
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 41.9 bits (99), Expect = 1e-05
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 125 LSRHQKAVNVVRFSPNGELLASGDDESTIIVWK 157
L H V V FSP+G+ LASG D+ TI +W
Sbjct: 8 LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 37.3 bits (87), Expect = 8e-04
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 223 KGKNLGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTYS 262
G+ L L H V VA+ P +Y+A+ S D +++ +
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 33.1 bits (76), Expect = 0.023
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 77 LSRHQKAVNVVRFSPNGELLASGDD 101
L H V V FSP+G+ LASG D
Sbjct: 8 LKGHTGPVTSVAFSPDGKYLASGSD 32
Score = 28.4 bits (64), Expect = 0.80
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 411 HYTKLTDITWSSDGKVLIASSTDGYCSI 438
H +T + +S DGK L + S DG +
Sbjct: 11 HTGPVTSVAFSPDGKYLASGSDDGTIKL 38
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 44.1 bits (104), Expect = 2e-04
Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 135 VRFSP-NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKILRGHLE 193
V F+P + + L + ++ TI+ W + L + S + L+GH +
Sbjct: 81 VAFNPFDPQKLFTASEDGTIMGWGIPEE-GLTQNISDPIVH-------------LQGHTK 126
Query: 194 DVYDISWSPTSTH-LISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVATL 252
V +S+ P++ + L S D +WDV +GK + ++ H + + W+ + T
Sbjct: 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTT 186
Query: 253 SSDRSLRTYSIQSKKVIS 270
S D+ L + ++S
Sbjct: 187 SKDKKLNIIDPRDGTIVS 204
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 42.2 bits (99), Expect = 8e-04
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 188 LRGHLEDVYDISWSPT-STHLISGSVDNTAIMWDV-HKGKN-------LGILTEHKKFVQ 238
L+GH + D+ ++P S L SGS D T +W++ H ++ IL HKK +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 239 GVAWDPKNQYVATLSS-DRSLRTYSIQSKK 267
+ W+P N Y+ S D + + I+++K
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEK 159
Score = 36.9 bits (85), Expect = 0.033
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 125 LSRHQKAVNVVRFSP-NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLDEENVNKEHWI 183
L H ++ ++F+P E+LASG ++ TI VW E P ++E+V KE
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVW---------EIPH---NDESV-KEIKD 116
Query: 184 VTKILRGHLEDVYDISWSPTSTHLI-SGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAW 242
IL+GH + + I W+P + +++ S D+ +WD+ K + KK + + W
Sbjct: 117 PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKK-LSSLKW 175
Query: 243 DPK 245
+ K
Sbjct: 176 NIK 178
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 36.0 bits (83), Expect = 0.062
Identities = 42/234 (17%), Positives = 71/234 (30%), Gaps = 42/234 (17%)
Query: 87 VRFSPNGELLASGDDVGKEIW--YLTERESGIANVEFASDLSRHQKAVNVVRFSPNGELL 144
+R+SP+G +LA G + YL + I F V+ R+SP+G+ +
Sbjct: 65 LRWSPDGSVLAFVSTDGGRVAQLYLVDVGGLITKTAF---------GVSDARWSPDGDRI 115
Query: 145 ASGDDESTIIVWKQKTDQDLPEFPSSNLDEEN-----------VNKEHWIVTKILRGHLE 193
A E K D F + V+ E ++ L
Sbjct: 116 AFLTAEGA-----SKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGN--L 168
Query: 194 DVYDISWSPTSTHLISGSVDNTA-------IMWDVHKGKNLGILTEHKKFVQGVAWDPKN 246
DV + + S +D+ A + G L LT + + +A+D
Sbjct: 169 DVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-ELESLTPGEGSISKLAFDADG 227
Query: 247 QYVATLSSDRSLRTYSIQSKKVI----SRACRSKLPVDSSHELFDKVVPLFHDD 296
+ +A L S R + ++ L V D
Sbjct: 228 KSIALL-GTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGD 280
Score = 29.0 bits (65), Expect = 9.2
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 15/79 (18%)
Query: 365 LFELKPSDDKPLFKLPYRIVIAVATE---------NNILLYDTQHASPFAFIANIHYTKL 415
L L D P P + + T +++ + D + F +
Sbjct: 9 LLALARVSD-PRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKTVRLLTFGGGVS---- 63
Query: 416 TDITWSSDGKVLIASSTDG 434
++ WS DG VL STDG
Sbjct: 64 -ELRWSPDGSVLAFVSTDG 81
>gnl|CDD|218251 pfam04762, IKI3, IKI3 family. Members of this family are
components of the elongator multi-subunit component of a
novel RNA polymerase II holoenzyme for transcriptional
elongation. This region contains WD40 like repeats.
Length = 903
Score = 35.0 bits (81), Expect = 0.13
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 237 VQGVAWDPKNQYVATLSSDRSLRTYSIQSKKVISRACRSKLPVDSSHELFDKVVPLFHDD 296
+ VA+ N VA L+SD + Y + KK + P +S DKV +
Sbjct: 414 INDVAFSKSNSCVAVLTSDGDISIYELSLKKRKPGSP----PKLTSKFSLDKVENSDSEV 469
Query: 297 TMKSFFRRLTFSPDGQLLIAPSG------CLENSDSTRKPISVTHVFTRACLNKPAVCLP 350
+ S R+L F D +LL+ L + D T P+SV+ + + + L
Sbjct: 470 ALGS-LRQLAFLNDSELLVLSDSDNITEIVLVDVDDTENPLSVSVITE---IEGIVLILS 525
Query: 351 SLQYYSVAV 359
S Y V +
Sbjct: 526 SNDYKHVYI 534
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 33.5 bits (76), Expect = 0.40
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 30/175 (17%)
Query: 116 IANVEFASDLSRHQKAVNVVRFSP-NGELLASGDDESTIIVW-----------KQKTDQD 163
+A + +++ H+K V + +S + LLASG D+ ++ +W K K +
Sbjct: 562 VARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANIC 621
Query: 164 LPEFPS-SNLDEENVNKEHWIVTKILR----------GHLEDVYDISWSPTSTHLISGSV 212
+FPS S + +H + LR GH + V + + +ST L+S S
Sbjct: 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSST-LVSSST 680
Query: 213 DNTAIMWDVH---KGKN---LGILTEHKKFVQGVAWDPKNQYVATLSSDRSLRTY 261
DNT +WD+ G N L H V + Y+AT S + Y
Sbjct: 681 DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVY 735
Score = 32.4 bits (73), Expect = 0.80
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 80 HQKAVNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSP 139
H K V+ VRF + L++S D ++W L+ SGI S H N V S
Sbjct: 660 HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHS-FMGHTNVKNFVGLSV 718
Query: 140 NGELLASGDDESTIIVWKQKTDQDLPEFPSSNLD 173
+ +A+G + + + V+ + + + +D
Sbjct: 719 SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTID 752
>gnl|CDD|219653 pfam07942, N2227, N2227-like protein. This family features
sequences that are similar to a region of hypothetical
yeast gene product N2227. This is thought to be
expressed during meiosis and may be involved in the
defence response to stressful conditions.
Length = 268
Score = 32.7 bits (75), Expect = 0.46
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 30 CYRIVTGGADSHVFDYLLKIPHRLKTGKIW-------YLTERESGIANVEFASD 76
C+ I T +V +Y+ I LK G W Y E ++E + +
Sbjct: 171 CFFIDTA---HNVLEYIDTIEKILKPGGHWINLGPLLYHFEPLPDEMSIELSLE 221
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 32.7 bits (74), Expect = 0.61
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Query: 463 PTKGEPVRSEDKPRSAEQAKGEGKVLGEKQTGNKVSPTDKSSEDTQKISVKNEKGSNSQV 522
P + V+ E++ R ++ + + K +K+ K S T+ +E + +Q+
Sbjct: 76 PMSDQYVKLEEERRHRQRLEKD-KREKKKREKEKRGRRRHHSLGTES----DEDIAPAQM 130
Query: 523 VEAVTSDIKES--------KDNNTPAEAMEVDPVPPETNAECPSTPKTHGGTPNKGGTPS 574
V+ VT ++ E+ KD N P A+++D P ++E K ++ S
Sbjct: 131 VDIVTEEMPENALPSDEDDKDPNDPYRALDIDLDKPLADSEKLPVQK------HRNAETS 184
Query: 575 KTPRRVQLITLSSPNRKRKQDEEKIRETIKENDAKKACLDEKEGGK 620
K+P + + + ++K K+ E+K +E ++ D KK E EG K
Sbjct: 185 KSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKK----EVEGFK 226
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 33.0 bits (75), Expect = 0.61
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 496 KVSPTDKSSEDTQKISVKNEKGSNSQVVEAVTSDIKESKDNNTPAEAMEVDPVPPETNAE 555
K++ D S+++ +S K S+ E + +D TP+ AME P PP A+
Sbjct: 61 KLASRDLSNDEMMMVSSDPPKSSSEMEGEMLAPQATVGRDEATPSIAMENTPSPPRRTAK 120
Query: 556 -CPSTPKTHGGTPNKGGTPSKTPRRVQLITLSSPNR 590
P+TPK N T + T RV+ T ++P+R
Sbjct: 121 ITPTTPKN-----NYSPTAAGT-ERVKEDTPATPSR 150
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 31.8 bits (72), Expect = 1.3
Identities = 16/98 (16%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 456 EESKENDPTKGEPVRSEDKPRSAEQAKGEGKVLGEKQTGNKVSPTDKSSEDTQKISVKNE 515
EE ++ ++ E +D+P EQ E+Q + + S+ + + +
Sbjct: 201 EEMGDDTESEDEEDGDDDQPTENEQ---------EEQGEGEGEGQEGSAPQESEATDRES 251
Query: 516 KGSNSQVVEAVTSDIKESKDNNTPAEAMEVDPVPPETN 553
+ ++V++ D+ + D+++ P P T+
Sbjct: 252 ESGEEEMVQSDQDDLPDESDDDSETPGEGARPARPFTS 289
>gnl|CDD|235158 PRK03761, PRK03761, LPS assembly outer membrane complex protein
LptD; Provisional.
Length = 778
Score = 31.4 bits (72), Expect = 1.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 409 NIHYTKLTDITWSSDGKVLIASSTDGY 435
N+ YTK++D + +D SSTDGY
Sbjct: 325 NVDYTKVSDPRYFTDFDSKYGSSTDGY 351
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 30.8 bits (70), Expect = 2.4
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 490 EKQTGNKVSPTDKSSED-TQKISVKNEKGSNSQVVEAVTSDIKESKDNNTPAEAMEVDPV 548
+K +S + +++I + N + D KE K+N + ++ +
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKK--- 73
Query: 549 PPETNAECPSTPKTHGGTPNKGGTPSKTPRRVQLITLSSPNRKRKQDEEKIRE 601
+ + PK+ G T TP K+ + + PN KI E
Sbjct: 74 --KKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAE 124
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 30.5 bits (68), Expect = 3.1
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 8/118 (6%)
Query: 485 GKVLGEKQTGNKVSPTDK------SSEDTQKISVKNEKGSNSQVVEAVTSDIKESKDNNT 538
G+ L KQT N +P + ++E VK +N+ E + ++
Sbjct: 238 GQKLAIKQTANTATPKAEVKTEAPAAEKQAAPVVKENTNTNTATTEKKETTTQQQTAPKA 297
Query: 539 PAEAMEVDPVP-PETNAECPSTPKTHGGTPNKGGTPSK-TPRRVQLITLSSPNRKRKQ 594
P EA + P P TNA +T TPSK T T ++ N Q
Sbjct: 298 PTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQ 355
>gnl|CDD|240323 PTZ00233, PTZ00233, variable surface protein Vir18; Provisional.
Length = 509
Score = 29.9 bits (67), Expect = 4.1
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 478 AEQAKGEGKVLGEKQTGNKVSPTDKSSEDTQKISVKNEKGSNSQVVEAVTSDIKESKDNN 537
A+++ E VL + Q+ + SP+ +ED + S+ N + S + E T + + +
Sbjct: 167 AQESNKESVVL-QPQSDSMPSPSSIGTEDKEPQSIVNHHSTTSGMGETQTQQL----NAS 221
Query: 538 TPAEAMEVDPVPPETNAECPSTPKTHGGTPNKGGT 572
+ E+D + +EC S G + T
Sbjct: 222 GDSPIRELDSSAGDPPSECVS-----GKESDLTCT 251
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 29.9 bits (67), Expect = 4.1
Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 7/120 (5%)
Query: 451 VPPSGEESKENDPTKGEPVRSEDKPRSAEQAKGEGKVLGEKQTGNKVSPTDKSSEDTQKI 510
V P G +P + + V +E + E Q ++ + + E+T +
Sbjct: 315 VGPVGP----GEPNQPDDV-AEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEA 369
Query: 511 SVKNEKGSNSQVVEAVTSDIKESKDNNTPAEAMEVDPVPPETNAECPSTPKTHGGTPNKG 570
++ E+ + + + P E + + P P+ P+
Sbjct: 370 DIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHD--ETEPEVPEKAAPIPDPA 427
Score = 29.6 bits (66), Expect = 5.6
Identities = 13/101 (12%), Positives = 34/101 (33%), Gaps = 3/101 (2%)
Query: 454 SGEESKENDPTKGEPV-RSEDKPRSAEQAKGEGKVLGEKQTGNKVSPTDKSSEDTQKISV 512
+ E + GE E+ + + + G + G+ ++V S+ + ++
Sbjct: 345 AAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAAL 404
Query: 513 KNEKGSNSQVVEAVTSDIKE--SKDNNTPAEAMEVDPVPPE 551
+E ++ + +K + DP P+
Sbjct: 405 ASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEPD 445
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 30.3 bits (68), Expect = 4.3
Identities = 35/161 (21%), Positives = 53/161 (32%), Gaps = 12/161 (7%)
Query: 466 GEPVRSEDKPRSAEQAKGEGKVLGEKQTGNKVSPTDKSSEDTQKISVKNEKGSNSQVVEA 525
GE + + R++E A G++ G+ V P E Q S+ E E
Sbjct: 496 GEEPEEDAERRNSEMAGISRMSEGQQPRGSSVQPESPQEEPLQPESMDAESVGEESDEEL 555
Query: 526 VTSDIKESKDNNTPAEAMEVDPV--------PPETNAECPSTPKTHGGTPNKGGTPSKTP 577
+ + S A V+ PP + + T T G TP
Sbjct: 556 LAEESPLSSHTELEGVATPVETKISSSRKLPPPPVSTSLENDSATVTSTTRNGNVSPHTP 615
Query: 578 RRVQLITLSSPNRKRKQDEEKIRETIKENDAKKACLDEKEG 618
+ Q RKRK+ EE E + + EK+G
Sbjct: 616 QDEQ----PPSGRKRKRKEEVESEPLGNQYLRHHNGSEKDG 652
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 29.8 bits (68), Expect = 4.7
Identities = 21/163 (12%), Positives = 46/163 (28%), Gaps = 7/163 (4%)
Query: 455 GEESKENDPTKGEPVRSEDKPRSAEQAKGEGKVLGEKQTGNKVSPTDKSSEDTQKISVKN 514
G E K + T E +++ + + + + + + +++
Sbjct: 28 GIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAE 87
Query: 515 EKGSNSQVVEAVTSDIKESKDNNTPAEAMEVDPVPPETNAECPSTPKTHGGTPNKGGTPS 574
+ + + + + PK K G
Sbjct: 88 AAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGG 147
Query: 575 KTPRRVQLITLSSPNRKRKQDEEK------IRETIKEND-AKK 610
K RR + +K+++ EK I ETI + A+K
Sbjct: 148 KGRRRRRGRRRRRKKKKKQKPTEKIPREVVIPETITVAELAEK 190
>gnl|CDD|234679 PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.
Length = 548
Score = 29.8 bits (68), Expect = 4.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 230 LTEHKKFVQGVAWD 243
L EHK FVQGV W
Sbjct: 487 LYEHKVFVQGVIWG 500
>gnl|CDD|202693 pfam03583, LIP, Secretory lipase. These lipases are expressed and
secreted during the infection cycle of these pathogens.
In particular, C. albicans has a large number of
different lipases, possibly reflecting broad lipolytic
activity, which may contribute to the persistence and
virulence of C. albicans in human tissue.
Length = 291
Score = 29.7 bits (67), Expect = 4.9
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 42 VFDYLLKIPHRLKTGKIWYLTERESGIANVEFASDLS 78
D ++ I K W GIA+VEFA DLS
Sbjct: 229 THDEIVPIADIDALYKNW----CAWGIASVEFAEDLS 261
>gnl|CDD|213844 TIGR03657, IsdB, heme uptake protein IsdB. Isd proteins are
iron-regulated surface proteins found in Bacillus,
Staphylococcus and Listeria species and are responsible
for heme scavenging from hemoproteins. The IsdB protein
is only observed in Staphylococcus and consists of an
N-terminal hydrophobic signal sequence, a pair of tandem
NEAT (NEAr Transporter, pfam05031) domains which confers
the ability to bind heme and a C-terminal sortase
processing signal which targets the protein to the cell
wall. IsdB is believed to make a direct contact with
methemoglobin facilitating transfer of heme to IsdB. The
heme is then transferred to other cell wall-bound NEAT
domain proteins such as IsdA and IsdC.
Length = 644
Score = 29.9 bits (66), Expect = 4.9
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 471 SEDKPRSAEQAKGEGKVLGEKQTGNKVSPTDKSSEDTQKISVKNEKGSNSQVVEAVTSDI 530
S + ++AE+ G + +T SPT + + + V N +++ VEA TS+
Sbjct: 34 SNGEAQAAEETGGT-NTEAQPKTEAVASPTTTTEKAPEAKPVANAVSVSNKEVEAPTSET 92
Query: 531 KESK---DNNTPAEAMEVDPVPPETNAECP 557
KE+K + P E EV P N P
Sbjct: 93 KEAKEVKEVKAPKETKEVKPAAKADNNTYP 122
>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD)
repeat [General function prediction only].
Length = 561
Score = 29.8 bits (67), Expect = 5.2
Identities = 44/211 (20%), Positives = 66/211 (31%), Gaps = 53/211 (25%)
Query: 84 VNVVRFSPNGELLASGDDVGKEIWYLTERESGIANVEFASDLSRHQKAVNVVRFSPNGEL 143
V V SP G L S G E W S V F RH V + FSPN +
Sbjct: 35 VAYVSESPLGTYLFSEHAAGVECWG---GPSKAKLVRF-----RHPD-VKYLDFSPNEKY 85
Query: 144 LASGDDESTII---------------VWKQKTDQDLPEFPSSNLDEENVNKEHWIVTKIL 188
L + E I VW + + F + W +L
Sbjct: 86 LVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ-----PYLGW---PVL 137
Query: 189 RGHLEDVY--DISWSPTSTHLISGSVDNTAIMWDVHKGKNLGILT-------EHKKFVQG 239
+ ++D Y + S H I+ +++ + +GIL H +
Sbjct: 138 KFSIDDKYVARVVGSSLYIHEITDNIEEH----PFKNLRPVGILDFSISPEGNHDEL--- 190
Query: 240 VAWDPKNQYVATLSSDRSLRTYSIQSKKVIS 270
W P+ L+ +R SI V+
Sbjct: 191 AYWTPE-----KLNKPAMVRILSIPKNSVLV 216
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 29.8 bits (66), Expect = 5.4
Identities = 28/146 (19%), Positives = 39/146 (26%), Gaps = 9/146 (6%)
Query: 452 PPSGEESKENDPTKGEPVRSEDKPRSAEQAKGEGKVLGEKQTGNKVSPTDKSSEDTQKIS 511
P S + T + P + T K S T ++ T +
Sbjct: 474 PTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVI 533
Query: 512 VKNEKGSNSQVVEAVTSDIKESKDNNTPAEAMEVDPVPPETNAECPSTPK--THGGTPNK 569
G + T S N T + E PV S P T T +
Sbjct: 534 -----GVTTTATSPPTG--TTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQ 586
Query: 570 GGTPSKTPRRVQLITLSSPNRKRKQD 595
GT S + I SS + R
Sbjct: 587 HGTGSSPTSQQPGIPSSSHSTPRSNS 612
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase.
Length = 603
Score = 29.5 bits (66), Expect = 6.1
Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 11/149 (7%)
Query: 415 LTDITWSSDGKVLIASSTDGY-----CSIISFGDNEIGIPYVPPSGEESKENDPTKGEPV 469
L+ I + +D L A + ++ + D + S +++ ++ ++ +
Sbjct: 46 LSTIRYRTDDLRLSAIEQEEGEGLKGPKLVIYQDGDFNSVVSYNSSDKNNDSLESEVDG- 104
Query: 470 RSEDKPRSAEQAKGEGKVLGEKQTGNKVSPTDKS---SEDTQKISVKNEKGSNSQVVEAV 526
+ KP+ EQA+ K ++S D +VK+EK + Q A
Sbjct: 105 GNNHKPKE-EQAQVSQKTTVSSSEEVQISARDIQLNHKTQFNPPTVKHEKNTRVQPRRAT 163
Query: 527 TSDIKESKDNNTPAEAMEVDPVPPETNAE 555
+KE +D A+A ++ PP +N++
Sbjct: 164 DEKVKEIRDKIIQAKAY-LNLAPPGSNSQ 191
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 29.2 bits (65), Expect = 6.4
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 443 DNEIGIPYVPPSGEESKENDPTKGEPVRSEDKPRSAEQAKGEGKVLGEKQTGNKVSPTDK 502
DN+ P P E +E ED+ + GEG ++ + +D
Sbjct: 163 DNDEAPPAQPDVDNEEEERLEESDGREEEEDE-EVGSDSYGEGNRELNEEEEEEAEGSDD 221
Query: 503 SSE--DTQKISVKNEKGSNSQVVEAVTSDIKESKDNNTPAEA 542
+ D + + ++G ++ E V + + + +P+E
Sbjct: 222 GEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEE 263
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 29.1 bits (65), Expect = 6.5
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 554 AECPSTP-KTHGGTPNKGGTPSKTPRRVQLITLSSPNRKRKQDEEKIRETIKENDAKKAC 612
EC + K K K RRV+ +R++KQ+E+ + ND K
Sbjct: 145 KECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEK------RRNDEDKRP 198
Query: 613 LDEKEGGKK 621
Sbjct: 199 GGGGGSSGG 207
>gnl|CDD|219106 pfam06614, Neuromodulin, Neuromodulin. This family consists of
several neuromodulin (Axonal membrane protein GAP-43)
sequences and is found in conjunction with pfam00612.
GAP-43 is a neuronal calmodulin-binding phosphoprotein
that is concentrated in growth cones and pre-synaptic
terminals.
Length = 174
Score = 28.7 bits (63), Expect = 7.1
Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 8/146 (5%)
Query: 456 EESKENDPTKGEPVRSEDKPRSAEQAKGEGKVLGEKQTGNKVSPTDKSSEDTQKISVKNE 515
E K ++PTK +E+K K + + + ++ +E K S N
Sbjct: 29 ETPKTDEPTKDGSSPAEEKKGEGSSDKPQEQPAPQAPASSEEKQASAETESATKASTDNS 88
Query: 516 KGSNSQVVEAVTSDIKESKDNNTPAEAMEVDPVPPETNAECPSTPKTHGGTPNKGGTPSK 575
S + V +ESK + PA P +A + P+ + S+
Sbjct: 89 PSSKADVAPLK----EESKKADVPAVTAAAATTPAAEDATAKAAPQ----PEQETAESSQ 140
Query: 576 TPRRVQLITLSSPNRKRKQDEEKIRE 601
+ + + P+ +Q+E K E
Sbjct: 141 EEEKKDAVEETKPSESAQQEEAKEEE 166
>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A.
This is a family of eukaryotic translation initiation
factors.
Length = 194
Score = 28.8 bits (65), Expect = 7.3
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 194 DVYDISWSPTSTH--LISGSVDNTAIMWDVHKGKNLGILTEHKKFVQGVAWDPKNQYVA 250
++D +WSP +I G + +D KG + L E + + W P + V
Sbjct: 61 PIHDFAWSPNGKEFAVIYGYMPAKITFFD-LKGNVIHSLGEQPR--NTIFWSPFGRLVL 116
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 28.9 bits (65), Expect = 8.1
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 502 KSSEDTQ-KISV----KNEKGSNSQVVEAVTSDIKESKDNNTPAEAMEVDPVPPETNAEC 556
K S +SV + + V T + + P P ++
Sbjct: 273 KQSSLLDVSLSVVLLNADSSVEANGVEPEPTGSVSD-----RPRHLSSDSSPSPPDTSDS 327
Query: 557 PSTPKTHGGTPNKGGTPSKTPRRVQLITLSSPNRKRKQDEEKIRETIK 604
+ +T P+ R + L SP RKR+ D+++ ++ K
Sbjct: 328 DPSTETPPPASLSHSPPAAFERPLAL----SPKRKREGDKKQKKKKSK 371
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.130 0.383
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,836,843
Number of extensions: 2956953
Number of successful extensions: 2018
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1946
Number of HSP's successfully gapped: 73
Length of query: 621
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 518
Effective length of database: 6,369,140
Effective search space: 3299214520
Effective search space used: 3299214520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (27.7 bits)