BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1555
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82649|RT22_BOVIN 28S ribosomal protein S22, mitochondrial OS=Bos taurus GN=MRPS22
PE=1 SV=2
Length = 359
Score = 185 bits (469), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 149/248 (60%), Gaps = 3/248 (1%)
Query: 14 FFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQ 73
F EVQ +L+K+T +DL K+F+ QE KPP YK +T ++E+ +A A +++
Sbjct: 69 FMDEEVQSILIKMTGLDLLKIFKPAV--QETKPPTYKLMTQAQLEEATRQAIEAAKVRLK 126
Query: 74 MPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANT 133
MPP++ R +VL+ DK L G + KYVFTDI++ I +R IVVREP G LR+A+
Sbjct: 127 MPPVLEERTPIN-DVLAEDKILEGTETGKYVFTDISYSIPHRERFIVVREPSGTLRKASW 185
Query: 134 NERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNIL 193
ER RM IYF + G P +F EENL+ + + +V +L+ Q+EPD Y +
Sbjct: 186 EERDRMIQIYFPKEGRRVLTPVIFREENLQTMYSQDRHVDVLNLCVAQFEPDSADYIKVH 245
Query: 194 NTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIKVYQI 253
+ T+ I + +D LRSTRHFG + ++ N ID LL+ + ++++DA L+++Y I
Sbjct: 246 HQTYEDIDKYGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDAASLVQLYHI 305
Query: 254 VNPESKCA 261
++P+ + A
Sbjct: 306 LHPDGQSA 313
>sp|P82650|RT22_HUMAN 28S ribosomal protein S22, mitochondrial OS=Homo sapiens GN=MRPS22
PE=1 SV=1
Length = 360
Score = 184 bits (467), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 151/252 (59%), Gaps = 11/252 (4%)
Query: 14 FFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQ 73
F EVQ +L K+T ++L K F+ QELKPP YK +T ++E+ +A A +++
Sbjct: 70 FMDEEVQSILTKMTGLNLQKTFKPAI--QELKPPTYKLMTQAQLEEATRQAVEAAKVRLK 127
Query: 74 MPPI----VPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLR 129
MPP+ VP D VL+ DK L G + KYVFTDI++ I +R IVVREP G LR
Sbjct: 128 MPPVLEERVPIND-----VLAEDKILEGTETTKYVFTDISYSIPHRERFIVVREPSGTLR 182
Query: 130 EANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLY 189
+A+ ER RM +YF + G P +F+EENL+ + + +V +L+ Q+EPD Y
Sbjct: 183 KASWEERDRMIQVYFPKEGRKILTPIIFKEENLRTMYSQDRHVDVLNLCFAQFEPDSTEY 242
Query: 190 HNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIK 249
+ + T+ I + +D LRSTR+FG +V++ NN ID LL+ + ++I+DA L++
Sbjct: 243 IKVHHKTYEDIDKRGKYDLLRSTRYFGGMVWYFVNNKKIDGLLIDQIQRDLIDDATNLVQ 302
Query: 250 VYQIVNPESKCA 261
+Y +++P+ + A
Sbjct: 303 LYHVLHPDGQSA 314
>sp|Q9CXW2|RT22_MOUSE 28S ribosomal protein S22, mitochondrial OS=Mus musculus GN=Mrps22
PE=2 SV=1
Length = 359
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 146/248 (58%), Gaps = 3/248 (1%)
Query: 14 FFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQ 73
F EVQ +L K+T +DL K FR Q LKPP YK +T ++E+ A A +++
Sbjct: 69 FMDEEVQRILTKITGLDLQKTFRPAI--QPLKPPTYKLMTQAQLEEATRLAVEAAKVRLK 126
Query: 74 MPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANT 133
MPP++ R +VL+ DK L G + KYVFTDI++ I +R IVVREP G LR+A+
Sbjct: 127 MPPVLEERKPIN-DVLAEDKILEGTETNKYVFTDISYNIPHRERFIVVREPSGTLRKASW 185
Query: 134 NERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNIL 193
ER R+ IYF + G P +F++ENLK + + + +L+ Q+EPD Y +
Sbjct: 186 EERDRVIQIYFPKEGRRVLPPVIFKDENLKTMYSQDRHADVLNLCVAQFEPDSAEYIKVH 245
Query: 194 NTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIKVYQI 253
+ T+ I + ++ LRSTRHFG + ++ N ID LL+ + ++++DA L+++Y +
Sbjct: 246 HQTYEDIDRHGKYELLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDATSLVQLYHM 305
Query: 254 VNPESKCA 261
++P+ + A
Sbjct: 306 LHPDGQSA 313
>sp|B3QSH0|DNLJ_CHLT3 DNA ligase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78)
GN=ligA PE=3 SV=1
Length = 684
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 4 KTITKSTSALFFKPEVQELLLKLTRIDL 31
+TI KS + F KP+VQELL KL R L
Sbjct: 565 ETIAKSVALFFTKPQVQELLGKLERAGL 592
>sp|Q0W932|ARGC_UNCMA N-acetyl-gamma-glutamyl-phosphate reductase OS=Uncultured
methanogenic archaeon RC-I GN=argC PE=3 SV=1
Length = 334
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 22/94 (23%)
Query: 52 LTTEEVEKLKEEAY-NRAIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITF 110
LTT++V+ + +E Y N+ ++Q P + R + F DI F
Sbjct: 246 LTTDQVQTIYDEFYKNKPFVRLQKPSLANVRGSN--------------------FCDIAF 285
Query: 111 GI-SDAKRIIVVREPDGLLREANTNERHRMNNIY 143
+ D+ RI+VV D +++ A+ MN +Y
Sbjct: 286 EVEKDSDRIVVVSAIDNMVKGASGQAIQNMNLMY 319
>sp|P49051|SLAP1_BACAN S-layer protein sap OS=Bacillus anthracis GN=sap PE=1 SV=1
Length = 814
Score = 31.2 bits (69), Expect = 8.9, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 26/163 (15%)
Query: 4 KTITKSTSALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEE 63
KT+TK+ +A F ++ + +++ +K QK E KF ++ VEKL +E
Sbjct: 189 KTVTKAEAAQFIAKTDKQFGTEAAKVESAKAVTTQKV-------EVKF--SKAVEKLTKE 239
Query: 64 ---AYNRAIKKMQMPPIVPARDDSK---LEVLSN--DKELLGHDVCKYVFTDITFGISDA 115
N+A + V +D K +E+ SN K+ DV K T++ G +A
Sbjct: 240 DIKVTNKANNDKVLVKEVTLSEDKKSATVELYSNLAAKQTYTVDVNKVGKTEVAVGSLEA 299
Query: 116 KRI------IVVREPDGL---LREANTNERHRMNNIYFSRPGA 149
K I +V EP L +++ N E I F P A
Sbjct: 300 KTIEMADQTVVADEPTALQFTVKDENGTEVVSPEGIEFVTPAA 342
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,788,189
Number of Sequences: 539616
Number of extensions: 4433050
Number of successful extensions: 10670
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 10658
Number of HSP's gapped (non-prelim): 16
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)