Query psy1555
Match_columns 271
No_of_seqs 70 out of 72
Neff 3.9
Searched_HMMs 29240
Date Sat Aug 17 00:10:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3itf_A Periplasmic adaptor pro 27.5 22 0.00075 29.5 1.4 59 11-74 82-141 (145)
2 3v2l_A AGAP005208-PA; odorant 24.3 51 0.0018 24.4 2.9 46 52-99 1-46 (120)
3 1wj6_A KIAA0049 protein, RSGI 21.6 86 0.0029 24.9 3.7 57 13-75 35-91 (101)
4 3fyr_A Sporulation inhibitor S 21.2 64 0.0022 22.5 2.6 18 49-66 3-20 (48)
5 2yxy_A Hypothetical conserved 20.1 68 0.0023 26.1 2.9 30 46-75 8-37 (115)
6 3oeo_A Spheroplast protein Y; 19.3 14 0.00047 30.1 -1.4 56 11-71 70-126 (138)
7 1sf9_A YFHH hypothetical prote 18.6 67 0.0023 26.6 2.6 29 47-75 27-55 (128)
8 2bkf_A Zinc-finger protein NBR 16.9 99 0.0034 23.9 3.0 56 13-74 27-82 (87)
9 2xha_A NUSG, transcription ant 15.2 1.4E+02 0.0047 26.0 3.9 36 85-127 93-128 (193)
10 1nb0_A Hypothetical protein FL 15.2 75 0.0026 26.2 2.1 32 46-77 103-134 (147)
No 1
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=27.54 E-value=22 Score=29.46 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=43.9
Q ss_pred CCCCCcHHHHHHHHHhhCCCchh-hccccccCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcCC
Q psy1555 11 SALFFKPEVQELLLKLTRIDLSK-VFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQM 74 (271)
Q Consensus 11 ~p~F~~~~VQ~LL~~lTgldl~K-VFr~r~~g~~~~~p~yklMTdeql~~~~~~~~~~A~~~LqM 74 (271)
++.|....|+.++.++..+.-+. |-+-+ . .--.|.+||+||-++..+...++..++-|+
T Consensus 82 ad~fDeaa~ral~~~~~~~~~e~~v~r~k-~----~~qiy~vLTPEQk~ql~e~~~~r~~~~~~~ 141 (145)
T 3itf_A 82 AENFDENAVRAQAEKMANEQIARQVEMAK-V----RNQMYRLLTPEQQAVLNEKHQQRMEQLRDV 141 (145)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHTTSCHHHHHHHHHHHHHHHHHTTCG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 57788999999999998887763 33333 1 234689999999999888888777766443
No 2
>3v2l_A AGAP005208-PA; odorant binding olfaction, general odorant binding protein, transport, secreted, odorant-binding protein; HET: PG4; 1.80A {Anopheles gambiae} PDB: 4f7f_A* 3vb1_A
Probab=24.32 E-value=51 Score=24.39 Aligned_cols=46 Identities=17% Similarity=0.055 Sum_probs=30.0
Q ss_pred cCHHHHHHHHHHHHHHHHhhcCCCCcccccCCccccccccCccccCCC
Q psy1555 52 LTTEEVEKLKEEAYNRAIKKMQMPPIVPARDDSKLEVLSNDKELLGHD 99 (271)
Q Consensus 52 MTdeql~~~~~~~~~~A~~~LqMPPVl~~R~~~~~~Vls~D~~L~g~d 99 (271)
||.||+++..+.......+.+.+++=.-.+-- ...+..|+.++.|-
T Consensus 1 mT~eq~~~~~~~~~~~C~~e~gv~~e~i~~~~--~~~~p~d~~~kC~~ 46 (120)
T 3v2l_A 1 MTVEQMMKSGEMIRSVCLGKTKVAEELVNGLR--ESKFADVKELKCYV 46 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHTT--TTCCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhhhCcCHHHHHHHH--cCCCCCCcccchHH
Confidence 89999999999998889888887763221111 11234566555443
No 3
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.59 E-value=86 Score=24.92 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=40.5
Q ss_pred CCCcHHHHHHHHHhhCCCchhhccccccCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcCCC
Q psy1555 13 LFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQMP 75 (271)
Q Consensus 13 ~F~~~~VQ~LL~~lTgldl~KVFr~r~~g~~~~~p~yklMTdeql~~~~~~~~~~A~~~LqMP 75 (271)
.++=++|+..++...|++ . | +.|+ -.-.--.....|+++++||++-|...... |||-
T Consensus 35 ~~tweel~~mvk~~f~L~-~--~-~IkY-~DEenD~V~i~Sq~E~eEAlkva~k~~n~-L~m~ 91 (101)
T 1wj6_A 35 NTTWADIEAMVKVSFDLN-T--I-QIKY-LDEENEEVSINSQGEYEEALKMAVKQGNQ-LQMQ 91 (101)
T ss_dssp TSCHHHHHHHHHHHHCCS-S--B-CCEE-ECTTSCEECCCSHHHHHHHHHHHHHHTSE-EEEE
T ss_pred CCCHHHHHHHHHHHcCCC-c--e-EEEE-ecCCCCEEEEecHHHHHHHHHHhccCCCE-EEEE
Confidence 466689999999999986 2 2 3334 33455567889999999999966555544 7773
No 4
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=21.24 E-value=64 Score=22.49 Aligned_cols=18 Identities=17% Similarity=0.008 Sum_probs=14.6
Q ss_pred ccccCHHHHHHHHHHHHH
Q psy1555 49 YKFLTTEEVEKLKEEAYN 66 (271)
Q Consensus 49 yklMTdeql~~~~~~~~~ 66 (271)
-+.|||++|-+++.+|++
T Consensus 3 M~~LSDe~LiesY~~A~e 20 (48)
T 3fyr_A 3 MRKLSDELLIESYFKATE 20 (48)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred hhhhcHHHHHHHHHHHHH
Confidence 367999999888887765
No 5
>2yxy_A Hypothetical conserved protein, GK0453; alpha and beta proteins (A+B) class, structural GENO unknown function, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=20.12 E-value=68 Score=26.11 Aligned_cols=30 Identities=27% Similarity=0.235 Sum_probs=25.2
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhhcCCC
Q psy1555 46 PPEYKFLTTEEVEKLKEEAYNRAIKKMQMP 75 (271)
Q Consensus 46 ~p~yklMTdeql~~~~~~~~~~A~~~LqMP 75 (271)
...|--||.+||+.+++.-.++|++-=||=
T Consensus 8 ekrySeMS~~EL~~EI~~L~ekarKAEq~G 37 (115)
T 2yxy_A 8 QKRYSEMTKEELQQEIAMLTEKARKAEQMG 37 (115)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHhhcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 345899999999999999999999875553
No 6
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=19.31 E-value=14 Score=30.07 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=31.3
Q ss_pred CCCCCcHHHHHHHHHhhCCCch-hhccccccCCCCCCCcccccCHHHHHHHHHHHHHHHHhh
Q psy1555 11 SALFFKPEVQELLLKLTRIDLS-KVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKK 71 (271)
Q Consensus 11 ~p~F~~~~VQ~LL~~lTgldl~-KVFr~r~~g~~~~~p~yklMTdeql~~~~~~~~~~A~~~ 71 (271)
++.|....|+.++..+..+.-+ -|-+-+ ..---|.+||+||-++..+...++-.++
T Consensus 70 a~~fDeaav~al~~~~~~~~~e~~~~~~~-----~~~~~~~vLTPEQr~q~~~~~~kr~~~~ 126 (138)
T 3oeo_A 70 SDTFDKVKAEAQIAKMEEQRKANMLAHME-----TQNKIYNILTPEQKKQFNANFEKRLTER 126 (138)
T ss_dssp CSSCCHHHHHHHHGGGSHHHHHHHHHHHH-----HHHHHHTTSCHHHHHHHHHHTC------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 3556667777777776665443 111111 1234689999999988777655554443
No 7
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=18.64 E-value=67 Score=26.59 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=25.0
Q ss_pred CcccccCHHHHHHHHHHHHHHHHhhcCCC
Q psy1555 47 PEYKFLTTEEVEKLKEEAYNRAIKKMQMP 75 (271)
Q Consensus 47 p~yklMTdeql~~~~~~~~~~A~~~LqMP 75 (271)
..|--||.+||+.+++.-.++|++-=||=
T Consensus 27 krySeMS~~EL~~EI~~L~EKaRKAEq~G 55 (128)
T 1sf9_A 27 KRYSQMTPHELNTEIALLSEKARKAEQHG 55 (128)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 35888999999999999999999876664
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=16.89 E-value=99 Score=23.91 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=39.2
Q ss_pred CCCcHHHHHHHHHhhCCCchhhccccccCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcCC
Q psy1555 13 LFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQM 74 (271)
Q Consensus 13 ~F~~~~VQ~LL~~lTgldl~KVFr~r~~g~~~~~p~yklMTdeql~~~~~~~~~~A~~~LqM 74 (271)
.++=++|+..++...|++ .. +.|+ -.-.--.....|+++++||++-|...... |||
T Consensus 27 ~~tweel~~mvk~~f~L~-~~---~ikY-~DEenD~v~i~Sq~E~eEAlkva~k~~n~-L~m 82 (87)
T 2bkf_A 27 NTTWADIEAMVKVSFDLN-TI---QIKY-LDEENEEVSINSQGEYEEALKMAVKQGNQ-LQM 82 (87)
T ss_dssp GCCHHHHHHHHHHHHTCS-SE---EEEE-ECTTSCEEEECSHHHHHHHHHHHHHTTTE-EEE
T ss_pred CCCHHHHHHHHHHHcCCC-ce---EEEE-EcCCCCEEEEecHHHHHHHHHHhccCCCE-EEE
Confidence 456688999999999986 22 3334 33455567889999999999966554444 555
No 9
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=15.24 E-value=1.4e+02 Score=26.00 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=29.5
Q ss_pred cccccccCccccCCCccceEEEeccCCCCCCeeeEEEECCCCc
Q psy1555 85 KLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGL 127 (271)
Q Consensus 85 ~~~Vls~D~~L~g~d~sk~VFTDIs~g~~~~eR~IVVREpdGt 127 (271)
..+|||+|+++-.=-+-.-.|.. ..|.|+|+..+|.
T Consensus 93 ~GdvLAKd~AIiaEIdG~V~fgk-------gkrrivI~~~~Ge 128 (193)
T 2xha_A 93 QGLPLSKNEEYICELDGKIVEIE-------RMKKVVVQTPDGE 128 (193)
T ss_dssp TTSBSSTTSCSBCCSSEEEEEEE-------EEEEEEEECTTSC
T ss_pred CCCEEecCCeEEEccceEEEECC-------CeEEEEEECCCCC
Confidence 36799999998776677777777 8899999988994
No 10
>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP; 1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A* 1q9s_A*
Probab=15.20 E-value=75 Score=26.19 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=27.9
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhhcCCCCc
Q psy1555 46 PPEYKFLTTEEVEKLKEEAYNRAIKKMQMPPI 77 (271)
Q Consensus 46 ~p~yklMTdeql~~~~~~~~~~A~~~LqMPPV 77 (271)
+|+-||=+-++|.+.+.+-++.|++.|.-|+-
T Consensus 103 R~E~kF~sle~L~~qI~~D~~~ar~~l~~~~~ 134 (147)
T 1nb0_A 103 RPEKNFDSLESLISAIQGDIEEAKKRLELPEY 134 (147)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHHHHHHTTSHHH
T ss_pred cCCcCCCCHHHHHHHHHHHHHHHHHHHhCcch
Confidence 57779999999999999999999999865543
Done!