Query psy1555
Match_columns 271
No_of_seqs 70 out of 72
Neff 3.9
Searched_HMMs 13730
Date Sat Aug 17 00:10:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1555.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1555hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nb9a_ b.43.5.1 (A:) Riboflav 62.4 1.5 0.00011 34.7 1.8 38 46-83 103-140 (147)
2 d1n08a_ b.43.5.1 (A:) Riboflav 27.0 12 0.00087 29.4 1.7 38 46-83 113-150 (154)
3 d2aala1 d.80.1.6 (A:1-129) Mal 21.2 66 0.0048 23.5 5.0 56 52-109 11-71 (129)
4 d1z3ea1 c.47.1.12 (A:1-114) Re 20.7 24 0.0017 25.3 2.2 73 14-103 37-110 (114)
5 d2g17a2 d.81.1.1 (A:154-308) N 18.3 29 0.0021 26.7 2.4 54 51-121 97-150 (155)
6 d1jifa_ d.32.1.2 (A:) Bleomyci 17.8 27 0.0019 23.5 1.8 13 116-128 103-115 (122)
7 d1sf9a_ b.34.15.1 (A:) Hypothe 17.8 34 0.0025 26.0 2.6 29 48-76 18-46 (118)
8 d1vkna2 d.81.1.1 (A:145-307) N 17.6 1.8E+02 0.013 21.9 7.1 87 17-121 64-158 (163)
9 d2c21a1 d.32.1.1 (A:3-141) Gly 16.8 32 0.0023 22.8 2.1 17 115-131 103-119 (139)
10 d1ecsa_ d.32.1.2 (A:) Bleomyci 16.3 30 0.0022 23.4 1.8 13 116-128 100-112 (120)
No 1
>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.45 E-value=1.5 Score=34.71 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=34.7
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhhcCCCCcccccCC
Q psy1555 46 PPEYKFLTTEEVEKLKEEAYNRAIKKMQMPPIVPARDD 83 (271)
Q Consensus 46 ~p~yklMTdeql~~~~~~~~~~A~~~LqMPPVl~~R~~ 83 (271)
+|+-||=|-++|.+.+.+-++.|++.|++|.-++.+++
T Consensus 103 R~e~KF~s~~~L~~qI~~Di~~ar~~l~~~~~~~~~~~ 140 (147)
T d1nb9a_ 103 RPEKNFDSLESLISAIQGDIEEAKKRLELPEYLKIKED 140 (147)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHHHHHHTTSHHHHGGGGC
T ss_pred cCCcCcCCHHHHHHHHHHHHHHHHHHHCChhhhhhccC
Confidence 56778999999999999999999999999999888775
No 2
>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=27.01 E-value=12 Score=29.39 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=32.9
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhhcCCCCcccccCC
Q psy1555 46 PPEYKFLTTEEVEKLKEEAYNRAIKKMQMPPIVPARDD 83 (271)
Q Consensus 46 ~p~yklMTdeql~~~~~~~~~~A~~~LqMPPVl~~R~~ 83 (271)
+++-||=+-++|.+.+.+-++.|++.|+.|+--.-|++
T Consensus 113 R~e~kF~s~e~L~~qI~~D~~~ar~~L~~~~~~~~~~~ 150 (154)
T d1n08a_ 113 RPELNYAGLDKLIEDIHTDIRVALNSMDRPSYSSYKKD 150 (154)
T ss_dssp ECCCCCCCHHHHHHHHHHHHHHHHHHHTSHHHHGGGGC
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHcChhHHhhccC
Confidence 56779999999999999999999999999876655543
No 3
>d2aala1 d.80.1.6 (A:1-129) Malonate semialdehyde decarboxylase, MSAD {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=21.18 E-value=66 Score=23.51 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=35.0
Q ss_pred cCHHHHHHHHHHHHHHHHhhcCCCC-----cccccCCccccccccCccccCCCccceEEEecc
Q psy1555 52 LTTEEVEKLKEEAYNRAIKKMQMPP-----IVPARDDSKLEVLSNDKELLGHDVCKYVFTDIT 109 (271)
Q Consensus 52 MTdeql~~~~~~~~~~A~~~LqMPP-----Vl~~R~~~~~~Vls~D~~L~g~d~sk~VFTDIs 109 (271)
.|+||.+.-.+...+...+-|.+|| ++.+.+| .+....+..|-+-.+..||+..|+
T Consensus 11 ~s~e~~~~l~~~i~~al~e~l~vP~dd~f~ii~e~~p--~~~~~~~~~l~~~rs~~~v~I~I~ 71 (129)
T d2aala1 11 RTDAQIKSLLDAAHGAMVDAFGVPANDRYQTVSQHRP--GEMVLEDTGLGYGRSSAVVLLTVI 71 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECT--TSEEECCTTSCCCCCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCcCceEEEEEEeCh--HHeEEcccccCcCCCCceEEEEEE
Confidence 5788877776666666777889998 4455554 233333444423336668888875
No 4
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=20.71 E-value=24 Score=25.31 Aligned_cols=73 Identities=14% Similarity=0.233 Sum_probs=43.5
Q ss_pred CCcHHHHHHHHHhhCCCchhhccccccC-CCCCCCcccccCHHHHHHHHHHHHHHHHhhcCCCCcccccCCccccccccC
Q psy1555 14 FFKPEVQELLLKLTRIDLSKVFRKQKYG-QELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQMPPIVPARDDSKLEVLSND 92 (271)
Q Consensus 14 F~~~~VQ~LL~~lTgldl~KVFr~r~~g-~~~~~p~yklMTdeql~~~~~~~~~~A~~~LqMPPVl~~R~~~~~~Vls~D 92 (271)
++.++++.+| +.+|.+.+.+|+++.+- .+++ ...+-||++++-+.+.+ = |.+=.|. + |+..+
T Consensus 37 ~s~~eL~~ll-~~~~~~~~~lin~~~~~~k~l~-~~~~~ls~~~~i~ll~~----~-------P~LikRP--I--~~~~~ 99 (114)
T d1z3ea1 37 LSIDEIKQIL-RMTEDGTDEIISTRSKVFQKLN-VNVESMPLQDLYRLINE----H-------PGLLRRP--I--IIDEK 99 (114)
T ss_dssp CCHHHHHHHH-HTCSSCGGGTBCTTSHHHHHHC-CCGGGSBHHHHHHHHHH----C-------GGGBCSC--E--EECSS
T ss_pred CCHHHHHHHH-HHhccCHHHHHHhcCchhhhcc-cchhhhhhHHHHHHHHh----C-------hhheeCC--E--EEECC
Confidence 5677888888 56788999999877210 0111 23467888887555442 1 4444443 2 23456
Q ss_pred ccccCCCccce
Q psy1555 93 KELLGHDVCKY 103 (271)
Q Consensus 93 ~~L~g~d~sk~ 103 (271)
.++-||+..++
T Consensus 100 ~~~iG~~~e~~ 110 (114)
T d1z3ea1 100 RLQVGYNEDEI 110 (114)
T ss_dssp CEEESCCTTGG
T ss_pred EEEEcCCHHHH
Confidence 67777776543
No 5
>d2g17a2 d.81.1.1 (A:154-308) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}
Probab=18.35 E-value=29 Score=26.73 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=35.3
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcCCCCcccccCCccccccccCccccCCCccceEEEeccCCCCCCeeeEEE
Q psy1555 51 FLTTEEVEKLKEEAYNRAIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVV 121 (271)
Q Consensus 51 lMTdeql~~~~~~~~~~A~~~LqMPPVl~~R~~~~~~Vls~D~~L~g~d~sk~VFTDIs~g~~~~eR~IVV 121 (271)
-+|.+++.+.++++++.. |.+....++ =|.++..-.++++ ||++.. +.+|.||+
T Consensus 97 ~~s~~~i~~~~~~~Y~~e-------~FV~v~~~~-------~p~~~~v~gtN~~--~i~~~~-~~~~lvi~ 150 (155)
T d2g17a2 97 GVTHAQVADVLQKAYGDK-------PLVRLYDKG-------VPALKNVVGLPFC--DIGFAV-QGEHLIVV 150 (155)
T ss_dssp TCCHHHHHHHHHHHHTTC-------TTEEECSSS-------CCCGGGTTTSCCE--EEEEEE-ETTEEEEE
T ss_pred hhhhHHHHHHHHHHHhhh-------hheEECCCC-------CCcHhhcCCCCcE--EEEEEE-eCCEEEEE
Confidence 578899999998887543 334333221 1677777788877 555544 56677765
No 6
>d1jifa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptomyces verticillus [TaxId: 29309]}
Probab=17.83 E-value=27 Score=23.45 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=11.2
Q ss_pred eeeEEEECCCCcc
Q psy1555 116 KRIIVVREPDGLL 128 (271)
Q Consensus 116 eR~IVVREpdGtL 128 (271)
-|.+.|++|||.+
T Consensus 103 ~~~~~~~DPdGn~ 115 (122)
T d1jifa_ 103 GREFAVRDPAGNC 115 (122)
T ss_dssp EEEEEEECTTCCE
T ss_pred eEEEEEECCCCCE
Confidence 4789999999976
No 7
>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus subtilis [TaxId: 1423]}
Probab=17.79 E-value=34 Score=26.04 Aligned_cols=29 Identities=21% Similarity=0.102 Sum_probs=25.0
Q ss_pred cccccCHHHHHHHHHHHHHHHHhhcCCCC
Q psy1555 48 EYKFLTTEEVEKLKEEAYNRAIKKMQMPP 76 (271)
Q Consensus 48 ~yklMTdeql~~~~~~~~~~A~~~LqMPP 76 (271)
.|--||..||+.++..-.++|++-=||==
T Consensus 18 rySeMs~~EL~~EIa~L~EKaRKAEq~Gi 46 (118)
T d1sf9a_ 18 RYSQMTPHELNTEIALLSEKARKAEQHGI 46 (118)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHccC
Confidence 47789999999999999999999877643
No 8
>d1vkna2 d.81.1.1 (A:145-307) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}
Probab=17.60 E-value=1.8e+02 Score=21.91 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhCCCchhhccccccCCCCCC----Ccc--cccCHHHHHHHHHHHHHHHHhhcCCCCcccccCCccccccc
Q psy1555 17 PEVQELLLKLTRIDLSKVFRKQKYGQELKP----PEY--KFLTTEEVEKLKEEAYNRAIKKMQMPPIVPARDDSKLEVLS 90 (271)
Q Consensus 17 ~~VQ~LL~~lTgldl~KVFr~r~~g~~~~~----p~y--klMTdeql~~~~~~~~~~A~~~LqMPPVl~~R~~~~~~Vls 90 (271)
||++.-|.+++|.+..=+|-|. . .+..+ ..| .-.|.+++.+.++++++.. | -.+|+.
T Consensus 64 pEi~q~l~~~~~~~~~~~F~Ph-l-~p~~RGil~ti~~~~~~s~~~i~~~~~~~Y~~~-------~--------fV~V~~ 126 (163)
T d1vkna2 64 PEMEQELGKISGKKVNVVFTPH-L-VPMTRGILSTIYVKTDKSLEEIHEAYLEFYKNE-------P--------FVHVLP 126 (163)
T ss_dssp HHHHHHHHHHHTSCCEEEEEEE-E-ESSSSCEEEEEEEECSSCHHHHHHHHHHHHTTC-------T--------TEEECC
T ss_pred HHHHHHHHhhcCCcccEEEEEe-e-ccccceeeeeeeecccccchHHHHHHHHHHhhc-------C--------cEEEcc
Confidence 7888888999999988888766 3 23211 111 1236677777777666432 2 233333
Q ss_pred cC--ccccCCCccceEEEeccCCCCCCeeeEEE
Q psy1555 91 ND--KELLGHDVCKYVFTDITFGISDAKRIIVV 121 (271)
Q Consensus 91 ~D--~~L~g~d~sk~VFTDIs~g~~~~eR~IVV 121 (271)
.+ |.++....++++...+..+ .+.+|.|||
T Consensus 127 ~~~~p~~~~V~gTN~~~I~v~~~-~~~~~~vi~ 158 (163)
T d1vkna2 127 MGIYPSTKWCYGSNHVFIGMQME-ERTNTLILM 158 (163)
T ss_dssp TTCCCCGGGGTTSSCEEEEEEEE-TTTTEEEEE
T ss_pred ccCCCCHhHccCCCcEEEEEEEc-CCCCEEEEE
Confidence 32 5666677788875444433 344566655
No 9
>d2c21a1 d.32.1.1 (A:3-141) Glyoxalase I (lactoylglutathione lyase) {Leishmania major [TaxId: 5664]}
Probab=16.82 E-value=32 Score=22.76 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=13.2
Q ss_pred CeeeEEEECCCCccccC
Q psy1555 115 AKRIIVVREPDGLLREA 131 (271)
Q Consensus 115 ~eR~IVVREpdGtLR~A 131 (271)
..+.+.+|+|||.+=+.
T Consensus 103 g~~~~~~~DPdGn~iEl 119 (139)
T d2c21a1 103 SGFMAFVVDPDGYYIEL 119 (139)
T ss_dssp SSSEEEEECTTSCEEEE
T ss_pred CcEEEEEECCCCCEEEE
Confidence 45778899999986554
No 10
>d1ecsa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Klebsiella pneumoniae [TaxId: 573]}
Probab=16.29 E-value=30 Score=23.42 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=10.9
Q ss_pred eeeEEEECCCCcc
Q psy1555 116 KRIIVVREPDGLL 128 (271)
Q Consensus 116 eR~IVVREpdGtL 128 (271)
.|.+.+|+|||.+
T Consensus 100 ~r~~~~~DPDGn~ 112 (120)
T d1ecsa_ 100 GTMAALVDPDGTL 112 (120)
T ss_dssp SEEEEEECTTSCE
T ss_pred cEEEEEECCCCCE
Confidence 3778999999976
Done!