BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15550
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IU1|A Chain A, Crystal Structure Of Eif5 C-Terminal Domain
Length = 208
Score = 115 bits (287), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 70/84 (83%)
Query: 6 RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
RF H + KAQRYLL+G+E V+A+H+ +L+S +P ILK YD D+LEE+V++ W+EK SKK
Sbjct: 71 RFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKK 130
Query: 66 YVSKELSAEIRSRAEPFIKWLREA 89
YVSKEL+ EIR +AEPFIKWL+EA
Sbjct: 131 YVSKELAKEIRVKAEPFIKWLKEA 154
>pdb|2FUL|A Chain A, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|B Chain B, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|C Chain C, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|D Chain D, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|E Chain E, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|F Chain F, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
Length = 177
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%)
Query: 15 QRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAE 74
++ + GIE+ + L + L+ ++P IL Y+ DI+ E+ ++ + K+SKK+V KE+S +
Sbjct: 86 EKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKK 145
Query: 75 IRSRAEPFIKWLREA 89
+R A+PFI WL A
Sbjct: 146 VRRAAKPFITWLETA 160
>pdb|3D3M|A Chain A, The Crystal Structure Of The C-Terminal Region Of Death
Associated Protein 5(Dap5)
pdb|3D3M|B Chain B, The Crystal Structure Of The C-Terminal Region Of Death
Associated Protein 5(Dap5)
Length = 168
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEK 61
P +F H+ + Q L + QV + M+ FYD +I+EE+ L W E
Sbjct: 85 PVMQKFLHDHVDLQVSALYAL-QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKED 143
Query: 62 TSKKYVSKELSAEIRSRAEPFIKWLREA 89
++++ K + + ++ WL A
Sbjct: 144 ITQEFPGK---GKALFQVNQWLTWLETA 168
>pdb|3L6A|A Chain A, Crystal Structure Of The C-Terminal Region Of Human P97
Length = 364
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEK 61
P +F H+ + Q L + QV + M+ FYD +I+EE+ L W E
Sbjct: 281 PVMQKFLHDHVDLQVSALYAL-QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKED 339
Query: 62 TSKKYVSK 69
++++ K
Sbjct: 340 ITQEFPGK 347
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 26 IALHKEKLLSMVPGILKLFYDYDILEEKVLLE 57
I+ ++E L ++V G+ +LF DY I + V+L+
Sbjct: 1432 ISANEEDLKALVEGVDQLFTDYQIKDGHVILQ 1463
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 26 IALHKEKLLSMVPGILKLFYDYDILEEKVLLE 57
I+ ++E L ++V G+ +LF DY I + V+L+
Sbjct: 1432 ISANEEDLKALVEGVDQLFTDYQIKDGHVILQ 1463
>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
Length = 1580
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 26 IALHKEKLLSMVPGILKLFYDYDILEEKVLLE 57
I+ ++E L ++V G+ +LF DY I + V+L+
Sbjct: 1336 ISANEEDLKALVEGVDQLFTDYQIKDGHVILQ 1367
>pdb|1PAQ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Eukaryotic
Initiation Factor 2b Epsilon
Length = 189
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 44 FYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREA 89
YD DI+EE V+ +W + S + E++ +++WL+ A
Sbjct: 139 LYDNDIIEEDVIYKWWDNVS----TDPRYDEVKKLTVKWVEWLQNA 180
>pdb|2E9H|A Chain A, Solution Structure Of The Eif-5_eif-2b Domain From Human
Eukaryotic Translation Initiation Factor 5
Length = 157
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 8 THEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLF 44
T D+K RY++NG + KL M+ G +K F
Sbjct: 72 TQFDVKNDRYIVNGSHEA-----NKLQDMLDGFIKKF 103
>pdb|2G2K|A Chain A, Nmr Structure Of An N-Terminal Fragment Of The
Eukaryotic Initiation Factor 5 (Eif5)
Length = 170
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 8 THEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLF 44
T D+K RY++NG + KL M+ G +K F
Sbjct: 65 TQFDVKNDRYIVNGSHEA-----NKLQDMLDGFIKKF 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,268,265
Number of Sequences: 62578
Number of extensions: 105229
Number of successful extensions: 256
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 11
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)