Query psy15550
Match_columns 125
No_of_seqs 108 out of 549
Neff 6.4
Searched_HMMs 46136
Date Sat Aug 17 00:11:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02020 W2: eIF4-gamma/eIF5/e 99.9 2.3E-27 5E-32 158.2 8.7 83 12-96 1-83 (84)
2 smart00515 eIF5C Domain at the 99.9 2.4E-24 5.2E-29 143.1 7.7 82 2-89 2-83 (83)
3 KOG2767|consensus 99.8 5.1E-21 1.1E-25 155.0 7.6 93 2-94 302-394 (400)
4 KOG2297|consensus 99.8 5.6E-20 1.2E-24 148.2 7.1 87 2-94 326-412 (412)
5 KOG1461|consensus 99.7 2.3E-17 5E-22 141.8 7.1 90 2-96 583-672 (673)
6 PF09090 MIF4G_like_2: MIF4G l 76.1 5.1 0.00011 31.3 4.4 53 4-61 82-135 (253)
7 PF09026 CENP-B_dimeris: Centr 70.1 1.3 2.8E-05 30.5 -0.2 7 107-113 40-46 (101)
8 PF00123 Hormone_2: Peptide ho 65.4 5.8 0.00013 21.1 1.8 12 76-87 16-27 (28)
9 PF09851 SHOCT: Short C-termin 63.8 9.5 0.00021 20.4 2.5 19 38-56 5-23 (31)
10 smart00070 GLUCA Glucagon like 58.8 8.3 0.00018 20.3 1.6 12 76-87 16-27 (27)
11 KOG2023|consensus 39.7 52 0.0011 30.3 4.5 94 9-103 265-364 (885)
12 PF02899 Phage_int_SAM_1: Phag 35.6 86 0.0019 19.1 4.0 39 50-88 44-82 (84)
13 PF08064 UME: UME (NUC010) dom 34.9 1.4E+02 0.0031 20.1 5.9 51 11-61 28-81 (107)
14 cd08327 CARD_RAIDD Caspase act 33.4 82 0.0018 21.2 3.8 26 39-64 25-50 (94)
15 cd08324 CARD_NOD1_CARD4 Caspas 32.2 1.3E+02 0.0027 20.2 4.4 29 35-63 15-43 (85)
16 PF04871 Uso1_p115_C: Uso1 / p 29.8 45 0.00097 23.9 2.1 9 73-81 101-109 (136)
17 KOG3214|consensus 29.8 24 0.00051 24.6 0.6 16 87-102 92-107 (109)
18 cd08330 CARD_ASC_NALP1 Caspase 28.9 1.7E+02 0.0036 18.9 5.6 50 36-89 16-73 (82)
19 PF15039 DUF4530: Domain of un 28.2 57 0.0012 22.6 2.3 22 78-99 82-103 (111)
20 cd08323 CARD_APAF1 Caspase act 26.6 1.7E+02 0.0037 19.3 4.4 48 37-88 16-71 (86)
21 cd06932 NR_LBD_PPAR The ligand 26.5 82 0.0018 24.7 3.3 35 13-47 191-225 (259)
22 smart00544 MA3 Domain in DAP-5 26.3 1.8E+02 0.004 19.1 4.6 31 31-61 50-80 (113)
23 cd06951 NR_LBD_Dax1_like The l 26.3 1.5E+02 0.0033 22.5 4.7 49 13-61 160-208 (222)
24 COG5587 Uncharacterized conser 25.0 43 0.00093 25.9 1.4 19 73-91 207-225 (228)
25 KOG1104|consensus 24.3 98 0.0021 28.5 3.6 56 3-62 567-622 (759)
26 KOG4493|consensus 24.3 79 0.0017 24.7 2.7 21 70-90 71-91 (219)
27 KOG3130|consensus 24.3 36 0.00079 29.3 0.9 17 39-55 163-179 (514)
28 cd08326 CARD_CASP9 Caspase act 23.9 1.9E+02 0.0042 18.8 4.2 25 38-62 19-43 (84)
29 KOG1991|consensus 23.4 3.6E+02 0.0079 25.8 7.1 72 13-88 518-600 (1010)
30 PF15387 DUF4611: Domain of un 23.2 1.3E+02 0.0029 20.5 3.3 19 72-90 35-53 (96)
31 PTZ00429 beta-adaptin; Provisi 23.0 1.4E+02 0.003 27.4 4.4 54 4-58 484-541 (746)
32 PF03202 Lipoprotein_10: Putat 22.7 72 0.0016 23.0 2.1 20 76-95 18-37 (135)
33 PF10446 DUF2457: Protein of u 22.6 35 0.00075 29.5 0.5 6 75-80 38-43 (458)
34 cd07350 NR_LBD_Dax1 The ligand 21.5 2.4E+02 0.0052 21.7 5.0 48 13-60 170-217 (232)
35 PF09733 VEFS-Box: VEFS-Box of 21.5 3.2E+02 0.0069 19.7 5.7 26 31-56 109-134 (140)
36 cd06950 NR_LBD_Tlx_PNR_like Th 21.4 2E+02 0.0043 21.5 4.4 39 17-55 157-195 (206)
37 PF11942 Spt5_N: Spt5 transcri 20.8 36 0.00078 22.8 0.2 13 82-94 1-13 (97)
38 cd06935 NR_LBD_TR The ligand b 20.1 1.3E+02 0.0028 23.3 3.2 9 14-22 153-161 (243)
No 1
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []. The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.
Probab=99.95 E-value=2.3e-27 Score=158.22 Aligned_cols=83 Identities=45% Similarity=0.722 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHccccc
Q psy15550 12 IKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAEE 91 (125)
Q Consensus 12 ~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~Fv~WLeeaeE 91 (125)
+++|+++|.|+|.+| .+++.+++.|++||+.||+.|||+|++|++||++ +++..+....+++|++++|||+||++|+|
T Consensus 1 ~~~Q~~~L~ale~~~-~~~~~~~~~~~~il~~LYd~Dil~Eeail~W~~~-~~~~~~~~~~~~~r~~~~~fi~WL~eaee 78 (84)
T PF02020_consen 1 EDDQVDLLNALEEFC-AENPNLMPLFPKILQQLYDEDILEEEAILEWYED-SKPAVDGEGRAKVRKQAQPFIEWLEEAEE 78 (84)
T ss_dssp HHHHHHHHHHHHHHH-HHTCGHGGHHHHHHHHHHHTTSS-HHHHHHHHHC--SSSSCHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHH-HhCccHHHHHHHHHHHHhhhhhccHHHHHHHHHc-CCccccchhHHHHHHHHHHHHHHHhccCc
Confidence 478999999999999 6789999999999999999999999999999988 43333455578899999999999999998
Q ss_pred ccCCC
Q psy15550 92 EDSDS 96 (125)
Q Consensus 92 Esdd~ 96 (125)
||+++
T Consensus 79 E~~ee 83 (84)
T PF02020_consen 79 ESDEE 83 (84)
T ss_dssp -----
T ss_pred cCCCC
Confidence 87754
No 2
>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5.
Probab=99.91 E-value=2.4e-24 Score=143.08 Aligned_cols=82 Identities=40% Similarity=0.694 Sum_probs=72.6
Q ss_pred CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550 2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP 81 (125)
Q Consensus 2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~ 81 (125)
|+|++|+++. ++|+++|.++|.+|. +++...+.|++||+.||++|||+|++|++||+++++ .+...+++++++|
T Consensus 2 ~ll~~~~~~~-~~q~~~L~ale~~~~-~~~~~~~~~~~il~~LYd~dileEe~il~W~~~~~~----~~~~~~~~~~~~~ 75 (83)
T smart00515 2 PLLKFLAKDE-EEQIDLLYAIEEFCV-ELEKLIKLLPKILKSLYDADILEEEAILKWYEKAVS----AEGKKKVRKNAKP 75 (83)
T ss_pred hHHHHHHCCh-HHHHHHHHHHHHHHH-HcchHHHHHHHHHHHHhhhccccHHHHHHHHHcCCC----hHHHHHHHHHHhH
Confidence 7899999975 999999999999995 445578999999999999999999999999988753 2356889999999
Q ss_pred HHHHHccc
Q psy15550 82 FIKWLREA 89 (125)
Q Consensus 82 Fv~WLeea 89 (125)
||+||++|
T Consensus 76 fv~WL~eA 83 (83)
T smart00515 76 FVTWLQEA 83 (83)
T ss_pred HHHHHHcC
Confidence 99999986
No 3
>KOG2767|consensus
Probab=99.84 E-value=5.1e-21 Score=155.02 Aligned_cols=93 Identities=55% Similarity=0.890 Sum_probs=85.1
Q ss_pred CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550 2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP 81 (125)
Q Consensus 2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~ 81 (125)
++|.+|+++++..|..+|..+|++|..++..+++..+.||+.||++||++|+.|++|+.+++.++++.+..+++++.++|
T Consensus 302 ~~l~k~~~~~~k~qr~LLggiE~~~~~~~~el~~kva~ilk~lYd~DI~~e~vi~~w~~K~skk~vsk~~sk~i~e~a~P 381 (400)
T KOG2767|consen 302 ALLLKFCTNNEKAQRYLLGGIERFVEKHEAELISKVAGILKELYDEDILEEEVIIKWGEKPSKKYVSKEKSKKIRENAKP 381 (400)
T ss_pred HHHHHHHhccHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccccccchhhhhhhHhhhhH
Confidence 47889999877999999999999997777788999999999999999999999999999999999888889999999999
Q ss_pred HHHHHcccccccC
Q psy15550 82 FIKWLREAEEEDS 94 (125)
Q Consensus 82 Fv~WLeeaeEEsd 94 (125)
||+||++||+|++
T Consensus 382 fi~WL~~AESe~e 394 (400)
T KOG2767|consen 382 FIEWLKNAESEDE 394 (400)
T ss_pred HHHHHHhcccccc
Confidence 9999999955444
No 4
>KOG2297|consensus
Probab=99.80 E-value=5.6e-20 Score=148.20 Aligned_cols=87 Identities=24% Similarity=0.473 Sum_probs=80.1
Q ss_pred CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550 2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP 81 (125)
Q Consensus 2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~ 81 (125)
|||..|++++ .+.+.+|+.+|.+| +++..+|+.|+.|+..||..||++|+.|++||++++.. + +...+.++++|
T Consensus 326 PLL~af~s~g-~sEL~Ll~KvQe~C-Yen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~---K-Gk~~Fleqmkk 399 (412)
T KOG2297|consen 326 PLLAAFCSQG-QSELELLLKVQEYC-YENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVA---K-GKSVFLEQMKK 399 (412)
T ss_pred HHHHHHhcCC-hHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccc---c-cHHHHHHHHHH
Confidence 8999999987 99999999999998 89999999999999999999999999999999998753 3 25778999999
Q ss_pred HHHHHcccccccC
Q psy15550 82 FIKWLREAEEEDS 94 (125)
Q Consensus 82 Fv~WLeeaeEEsd 94 (125)
||+||++|||||+
T Consensus 400 FVeWL~~AEEEsE 412 (412)
T KOG2297|consen 400 FVEWLQNAEEESE 412 (412)
T ss_pred HHHHHHhhhhccC
Confidence 9999999998864
No 5
>KOG1461|consensus
Probab=99.70 E-value=2.3e-17 Score=141.79 Aligned_cols=90 Identities=28% Similarity=0.515 Sum_probs=78.2
Q ss_pred CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550 2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP 81 (125)
Q Consensus 2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~ 81 (125)
|++++|+++ ++.|+++|.+||.+| ..+..+.+.+.++++.||+.||++|++|++|+...+ ++.+..++.++++++
T Consensus 583 ~l~~~y~ks-~deqid~l~~led~~-~e~~~~~~~~~~~v~~lY~~dil~EdaI~~W~~~~~---~~~~~~~~~~~~~k~ 657 (673)
T KOG1461|consen 583 PLLGNYIKS-EDEQIDLLLALEDKC-VESEELGPKAAKLVHYLYDYDILQEDAILSWSSQKA---GDDEEDAVYNQQLKK 657 (673)
T ss_pred HHhhhhhhh-HHHHHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHhHhhHHHHHHhhhccc---cchHHHHHHHHHHHH
Confidence 789999998 499999999999999 466777889999999999999999999999998733 244556778999999
Q ss_pred HHHHHcccccccCCC
Q psy15550 82 FIKWLREAEEEDSDS 96 (125)
Q Consensus 82 Fv~WLeeaeEEsdd~ 96 (125)
||+||++|+|||+++
T Consensus 658 fv~WL~easeE~~~e 672 (673)
T KOG1461|consen 658 FVDWLKEASEEEESE 672 (673)
T ss_pred HHHHHhhcccccccC
Confidence 999999999887754
No 6
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=76.13 E-value=5.1 Score=31.31 Aligned_cols=53 Identities=13% Similarity=0.282 Sum_probs=40.8
Q ss_pred cccc-ccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhh
Q psy15550 4 CPRF-THEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEK 61 (125)
Q Consensus 4 l~~f-~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~ 61 (125)
|+.+ ..+ +..|..+|.++-++- .++|.+. .-|+..|-+.+||+-.+|++|.=+
T Consensus 82 Lk~l~~~~-~~~q~~il~~v~~~W-~~~~q~~---~li~dkll~~~ii~~~~Vv~w~f~ 135 (253)
T PF09090_consen 82 LKELEAES-EEAQFWILDAVFRFW-KNNPQMG---FLIIDKLLNYGIISPSAVVNWVFS 135 (253)
T ss_dssp HHHH-TSS-HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHTTSS-HHHHHHHHTS
T ss_pred HHHhccCC-hHHHHHHHHHHHHHH-hcCCcee---hHHHHHHHhcCCCCHHHHHHHHcC
Confidence 4455 444 589999999998887 4677744 688999999999999999999643
No 7
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=70.12 E-value=1.3 Score=30.49 Aligned_cols=7 Identities=0% Similarity=-0.515 Sum_probs=0.4
Q ss_pred cccccCc
Q psy15550 107 GALTFGK 113 (125)
Q Consensus 107 ~~~~~~~ 113 (125)
+++-+++
T Consensus 40 e~p~p~f 46 (101)
T PF09026_consen 40 EVPVPEF 46 (101)
T ss_dssp ------H
T ss_pred cccchhH
Confidence 4444443
No 8
>PF00123 Hormone_2: Peptide hormone; InterPro: IPR000532 A number of polypeptidic hormones, mainly expressed in the intestine or the pancreas, belong to a group of structurally related peptides [, ]. Once such hormone, glucagon is widely distributed and produced in the alpha-cells of pancreatic islets []. It affects glucose metabolism in the liver [] by inhibiting glycogen synthesis, stimulating glycogenolysis and enchancing gluconeogenesis. It also increases mobilisation of glucose, free fatty acids and ketone bodies, which are metabolites produced in excess in diabetes mellitus. Glucagon is produced, like other peptide hormones, as part of a larger precursor (preproglucagon), which is cleaved to produce glucagon, glucagon-like protein I and glucagon-like protein II []. The structure of glucagon itself is fully conserved in all known mammalian species []. Other members of the structurally similar group include glicentin precursor, secretin, gastric inhibitory protein, vasoactive intestinal peptide (VIP), prealbumin, peptide HI-27 and growth hormone releasing factor.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1T5Q_A 2OBU_A 2QKH_B 2L70_A 2L71_A 2B4N_A 1GCN_A 1D0R_A 3IOL_B 2RRI_A ....
Probab=65.44 E-value=5.8 Score=21.13 Aligned_cols=12 Identities=33% Similarity=0.822 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHc
Q psy15550 76 RSRAEPFIKWLR 87 (125)
Q Consensus 76 r~~~~~Fv~WLe 87 (125)
...++.||+||.
T Consensus 16 ~~aak~fl~~L~ 27 (28)
T PF00123_consen 16 QLAAKKFLQWLM 27 (28)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 356889999995
No 9
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=63.81 E-value=9.5 Score=20.43 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=16.6
Q ss_pred HHHHHHHhhhcccchhHHH
Q psy15550 38 PGILKLFYDYDILEEKVLL 56 (125)
Q Consensus 38 ~~IL~~LYd~DIleEeaIl 56 (125)
...|+.||+.++|+++.+.
T Consensus 5 L~~L~~l~~~G~IseeEy~ 23 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYE 23 (31)
T ss_pred HHHHHHHHHcCCCCHHHHH
Confidence 4678999999999999875
No 10
>smart00070 GLUCA Glucagon like hormones.
Probab=58.82 E-value=8.3 Score=20.34 Aligned_cols=12 Identities=33% Similarity=0.822 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHc
Q psy15550 76 RSRAEPFIKWLR 87 (125)
Q Consensus 76 r~~~~~Fv~WLe 87 (125)
...++.||+||.
T Consensus 16 ~~~ar~fl~~L~ 27 (27)
T smart00070 16 QLAAKKFLQWLM 27 (27)
T ss_pred HHHHHHHHHHhC
Confidence 356889999983
No 11
>KOG2023|consensus
Probab=39.67 E-value=52 Score=30.27 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred cCchHHHHHHHHHHHHHHHhh-----HHHHHhhHHHHHHHHhhhcccchhHHHHHH-hhcccccccHHHHHHHHHHHHHH
Q psy15550 9 HEDIKAQRYLLNGIEQVIALH-----KEKLLSMVPGILKLFYDYDILEEKVLLEWA-EKTSKKYVSKELSAEIRSRAEPF 82 (125)
Q Consensus 9 ~~~~~~q~~~L~ale~~~~~~-----~~~~~~~f~~IL~~LYd~DIleEeaIl~W~-~~~~~~~~~~e~~~~~r~~~~~F 82 (125)
+.+ .++--.|.|-|-..+.. ...+.+.+++++-.|-..=+-+|+.|+--. ......-++.+..-+=|-.-.+-
T Consensus 265 tqd-~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~ 343 (885)
T KOG2023|consen 265 TQD-VDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKE 343 (885)
T ss_pred ccC-cchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchh
Q ss_pred HHHHcccccccCCCCCCCCCc
Q psy15550 83 IKWLREAEEEDSDSEESDDDL 103 (125)
Q Consensus 83 v~WLeeaeEEsdd~eeddd~~ 103 (125)
..=...+++|+++++|+||||
T Consensus 344 ~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 344 HGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred ccCcccccccccccccccccc
No 12
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=35.63 E-value=86 Score=19.10 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=21.7
Q ss_pred cchhHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHcc
Q psy15550 50 LEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLRE 88 (125)
Q Consensus 50 leEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~Fv~WLee 88 (125)
|+...|..|.........++..........+.|..||..
T Consensus 44 i~~~~v~~f~~~~~~~~~s~~T~~~~~~alr~f~~~l~~ 82 (84)
T PF02899_consen 44 ITEEDVRDFLEYLAKEGLSPSTINRRLSALRAFFRFLYR 82 (84)
T ss_dssp --HHHHHHHHHHHHCTT--HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455666666654332211223345567788899999964
No 13
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=34.86 E-value=1.4e+02 Score=20.08 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHHHHHhhHHHHH---hhHHHHHHHHhhhcccchhHHHHHHhh
Q psy15550 11 DIKAQRYLLNGIEQVIALHKEKLL---SMVPGILKLFYDYDILEEKVLLEWAEK 61 (125)
Q Consensus 11 ~~~~q~~~L~ale~~~~~~~~~~~---~~f~~IL~~LYd~DIleEeaIl~W~~~ 61 (125)
+...+..+|.+++.++....+.+. |++..+|+.--+.+=+.+.++--|..=
T Consensus 28 ~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~f 81 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCF 81 (107)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 347788899999999864444443 444445555556777888999999753
No 14
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=33.43 E-value=82 Score=21.19 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=20.0
Q ss_pred HHHHHHhhhcccchhHHHHHHhhccc
Q psy15550 39 GILKLFYDYDILEEKVLLEWAEKTSK 64 (125)
Q Consensus 39 ~IL~~LYd~DIleEeaIl~W~~~~~~ 64 (125)
.|+..||+.+|+.++.+-.=...+++
T Consensus 25 ~v~~~L~~~gIlT~~~~e~I~a~~T~ 50 (94)
T cd08327 25 LVIQYLYQEGILTESHVEEIESQTTS 50 (94)
T ss_pred HHHHHHHhCCCCCHHHHHHHHccCCh
Confidence 38888999999999988665554443
No 15
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=32.24 E-value=1.3e+02 Score=20.23 Aligned_cols=29 Identities=3% Similarity=-0.078 Sum_probs=21.8
Q ss_pred hhHHHHHHHHhhhcccchhHHHHHHhhcc
Q psy15550 35 SMVPGILKLFYDYDILEEKVLLEWAEKTS 63 (125)
Q Consensus 35 ~~f~~IL~~LYd~DIleEeaIl~W~~~~~ 63 (125)
....-+|-.||+++++..|..-.=-..++
T Consensus 15 ~~v~plLD~Ll~n~~it~E~y~~V~a~~T 43 (85)
T cd08324 15 RNTQCLVDNLLKNDYFSTEDAEIVCACPT 43 (85)
T ss_pred HhhHHHHHHHhccCCccHHHHHHHHhCCC
Confidence 34567899999999999998754444444
No 16
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=29.79 E-value=45 Score=23.88 Aligned_cols=9 Identities=11% Similarity=0.268 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q psy15550 73 AEIRSRAEP 81 (125)
Q Consensus 73 ~~~r~~~~~ 81 (125)
.+.|+..+.
T Consensus 101 ~kyk~rLk~ 109 (136)
T PF04871_consen 101 KKYKERLKE 109 (136)
T ss_pred HHHHHHHHH
Confidence 344444333
No 17
>KOG3214|consensus
Probab=29.78 E-value=24 Score=24.57 Aligned_cols=16 Identities=50% Similarity=0.821 Sum_probs=7.6
Q ss_pred cccccccCCCCCCCCC
Q psy15550 87 REAEEEDSDSEESDDD 102 (125)
Q Consensus 87 eeaeEEsdd~eeddd~ 102 (125)
+..+|++++++++|+|
T Consensus 92 ~nd~e~~s~eee~ded 107 (109)
T KOG3214|consen 92 ENDEEEESEEEEDDED 107 (109)
T ss_pred hccccccCchhhcccc
Confidence 3444444444555544
No 18
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=28.89 E-value=1.7e+02 Score=18.93 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=32.1
Q ss_pred hHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHH--------HHHHHHHHHHHccc
Q psy15550 36 MVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEI--------RSRAEPFIKWLREA 89 (125)
Q Consensus 36 ~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~--------r~~~~~Fv~WLeea 89 (125)
....|+-.||..+|++++..-.=...++++ +++.++ ......|+..|++-
T Consensus 16 ~v~~ilD~L~~~~Vit~e~~~~I~a~~T~~----~kar~Lld~l~~kG~~A~~~F~~~L~e~ 73 (82)
T cd08330 16 NVDPILDKLHGKKVITQEQYSEVRAEKTNQ----EKMRKLFSFVRSWGASCKDIFYQILREE 73 (82)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHcCCCcH----HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 456899999999999999876555544432 222222 12334688888743
No 19
>PF15039 DUF4530: Domain of unknown function (DUF4530)
Probab=28.19 E-value=57 Score=22.56 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=12.9
Q ss_pred HHHHHHHHHcccccccCCCCCC
Q psy15550 78 RAEPFIKWLREAEEEDSDSEES 99 (125)
Q Consensus 78 ~~~~Fv~WLeeaeEEsdd~eed 99 (125)
.-+..++-|++.+++|++++++
T Consensus 82 lreElvt~lEEEee~s~e~ee~ 103 (111)
T PF15039_consen 82 LREELVTILEEEEEESEEEEED 103 (111)
T ss_pred HHHHHHHHhHHhhccccchhhh
Confidence 3345777888766655544333
No 20
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=26.59 E-value=1.7e+02 Score=19.26 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHH--------HHHHHHHHHHHcc
Q psy15550 37 VPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEI--------RSRAEPFIKWLRE 88 (125)
Q Consensus 37 f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~--------r~~~~~Fv~WLee 88 (125)
...|+..||..+|++++.+-.=...++.+ ++...+ ..+-..|..+|++
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~t~~----~qa~~Lld~L~trG~~Af~~F~~aL~~ 71 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKATQK----EKAVMLINMILTKDNHAYVSFYNALLH 71 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCCChH----HHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 35799999999999999886655554432 111111 1234468888874
No 21
>cd06932 NR_LBD_PPAR The ligand binding domain of peroxisome proliferator-activated receptors. The ligand binding domain (LBD) of peroxisome proliferator-activated receptors (PPAR): Peroxisome proliferator-activated receptors (PPARs) are members of the nuclear receptor superfamily of ligand-activated transcription factors. PPARs play important roles in regulating cellular differentiation, development and lipid metabolism. Activated PPAR forms a heterodimer with the retinoid X receptor (RXR) that binds to the hormone response element located upstream of the peroxisome proliferator responsive genes and interacts with co-activators. There are three subtypes of peroxisome proliferator activated receptors, alpha, beta (or delta), and gamma, each with a distinct tissue distribution. Several essential fatty acids, oxidized lipids and prostaglandin J derivatives can bind and activate PPAR. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, P
Probab=26.46 E-value=82 Score=24.71 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhh
Q psy15550 13 KAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDY 47 (125)
Q Consensus 13 ~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~ 47 (125)
..|-.++.||+.+|...+|.-...|+++|..|=+.
T Consensus 191 ~lQe~~~~aL~~~i~~~~p~~~~rf~kLLl~L~~L 225 (259)
T cd06932 191 RIQEHVLQALELQLKKNHPDSPQLFAKLLQKMVDL 225 (259)
T ss_pred HHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHH
Confidence 34555566666665433444444555555555443
No 22
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=26.29 E-value=1.8e+02 Score=19.05 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=25.4
Q ss_pred HHHHhhHHHHHHHHhhhcccchhHHHHHHhh
Q psy15550 31 EKLLSMVPGILKLFYDYDILEEKVLLEWAEK 61 (125)
Q Consensus 31 ~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~ 61 (125)
+...+.+..+++.|++.++++.+.|..=+..
T Consensus 50 ~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~ 80 (113)
T smart00544 50 RTYREMYSVLLSRLCQANVISTKQFEKGFWR 80 (113)
T ss_pred ccHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 4567888999999999999999988765543
No 23
>cd06951 NR_LBD_Dax1_like The ligand binding domain of DAX1 protein, a nuclear receptor lacking DNA binding domain. The ligand binding domain of DAX1-like proteins: This orphan nuclear receptor family includes DAX1 (dosage-sensitive sex reversal adrenal hypoplasia congenita critical region on chromosome X gene 1) and the Small Heterodimer Partner (SHP). Both receptors have a typical ligand binding domain, but lack the DNA binding domain, typical to almost all of the nuclear receptors. They function as a transcriptional coregulator by directly interacting with other nuclear receptors. DAX1 and SHP can form heterodimers with each other, as well as with many other nuclear receptors. In addition, DAX1 can also form homodimers. DAX1 plays an important role in the normal development of several hormone-producing tissues. SHP has shown to regulate a variety of target genes.
Probab=26.28 E-value=1.5e+02 Score=22.51 Aligned_cols=49 Identities=6% Similarity=-0.023 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhh
Q psy15550 13 KAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEK 61 (125)
Q Consensus 13 ~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~ 61 (125)
.-|-.++.|+++|+...+|.-...|+++|..|=..=-++...|-.++-.
T Consensus 160 ~lQe~~~~aL~~yi~~~~p~~~~Rf~kLLl~Lp~LRsl~~~~~e~lff~ 208 (222)
T cd06951 160 ALQKEAQQALNEHTMMTRPLEQLRSARLLLMLSLLRGIKTEPVTELFFR 208 (222)
T ss_pred HHHHHHHHHHHHHHHhhCCCcccHHHHHHHHhHHhhcCCHHHHHHHhCc
Confidence 5566777888888754455555677888888777777777777777643
No 24
>COG5587 Uncharacterized conserved protein [Function unknown]
Probab=25.00 E-value=43 Score=25.87 Aligned_cols=19 Identities=47% Similarity=0.950 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHccccc
Q psy15550 73 AEIRSRAEPFIKWLREAEE 91 (125)
Q Consensus 73 ~~~r~~~~~Fv~WLeeaeE 91 (125)
..+...++|||+|+..+++
T Consensus 207 vdf~~ra~PliDw~ra~e~ 225 (228)
T COG5587 207 VDFLHRAAPLIDWLRAAED 225 (228)
T ss_pred HHHHHHhhhHHHHHHHHhc
Confidence 4456779999999998874
No 25
>KOG1104|consensus
Probab=24.35 E-value=98 Score=28.50 Aligned_cols=56 Identities=9% Similarity=0.164 Sum_probs=42.8
Q ss_pred cccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhc
Q psy15550 3 QCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKT 62 (125)
Q Consensus 3 ll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~ 62 (125)
+|++++.+++..|..+|.++=.+- ..+|... ..++-.|-...||+-.+|..|.=+.
T Consensus 567 vfk~l~~~~e~~q~~vl~~vft~W-k~n~Qm~---~v~~Dkml~~~ii~~~aVv~WiF~~ 622 (759)
T KOG1104|consen 567 VFKKLCEDSETKQIIVLEAVFTFW-KANPQMG---FVLTDKMLKYQIIDCSAVVRWIFSE 622 (759)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHH-hcCchhh---HHHHHHHhccccccHHHHHHHhcCH
Confidence 577788877566999999986665 4566643 4667778889999999999996443
No 26
>KOG4493|consensus
Probab=24.30 E-value=79 Score=24.66 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHcccc
Q psy15550 70 ELSAEIRSRAEPFIKWLREAE 90 (125)
Q Consensus 70 e~~~~~r~~~~~Fv~WLeeae 90 (125)
+-..++++.++.|++||+++.
T Consensus 71 EL~~kl~~~i~qF~~~ir~~~ 91 (219)
T KOG4493|consen 71 ELNEKLDEKIAQFIDTIRNEA 91 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 445788999999999999765
No 27
>KOG3130|consensus
Probab=24.27 E-value=36 Score=29.28 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=10.7
Q ss_pred HHHHHHhhhcccchhHH
Q psy15550 39 GILKLFYDYDILEEKVL 55 (125)
Q Consensus 39 ~IL~~LYd~DIleEeaI 55 (125)
-|+..+-.+|+-+++.+
T Consensus 163 iI~~~~~~~d~~~~dvl 179 (514)
T KOG3130|consen 163 IIFEADIANDVKSKDVL 179 (514)
T ss_pred HHHHHHhhcchhhhhcc
Confidence 36677776666666644
No 28
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=23.85 E-value=1.9e+02 Score=18.84 Aligned_cols=25 Identities=4% Similarity=0.050 Sum_probs=19.0
Q ss_pred HHHHHHHhhhcccchhHHHHHHhhc
Q psy15550 38 PGILKLFYDYDILEEKVLLEWAEKT 62 (125)
Q Consensus 38 ~~IL~~LYd~DIleEeaIl~W~~~~ 62 (125)
..|+..||..+|+..+.+-.=...+
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~~ 43 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAAG 43 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCC
Confidence 5799999999999998765444333
No 29
>KOG1991|consensus
Probab=23.39 E-value=3.6e+02 Score=25.82 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhh---HHHHHhhHHHHHHHH------hhhcccch--hHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550 13 KAQRYLLNGIEQVIALH---KEKLLSMVPGILKLF------YDYDILEE--KVLLEWAEKTSKKYVSKELSAEIRSRAEP 81 (125)
Q Consensus 13 ~~q~~~L~ale~~~~~~---~~~~~~~f~~IL~~L------Yd~DIleE--eaIl~W~~~~~~~~~~~e~~~~~r~~~~~ 81 (125)
.-+++.-.|+|.++... ++.+.+.+|.+++.| |++|.++. +.|..-|...-++. ...-+...++.
T Consensus 518 PV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPf----A~eL~q~La~~ 593 (1010)
T KOG1991|consen 518 PVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPF----AVELCQNLAET 593 (1010)
T ss_pred chhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchh----HHHHHHHHHHH
Confidence 34566677888887421 133555566665555 45566554 45555554433332 23445677888
Q ss_pred HHHHHcc
Q psy15550 82 FIKWLRE 88 (125)
Q Consensus 82 Fv~WLee 88 (125)
|..-|++
T Consensus 594 F~k~l~~ 600 (1010)
T KOG1991|consen 594 FLKVLQT 600 (1010)
T ss_pred HHHHHhc
Confidence 9999997
No 30
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=23.18 E-value=1.3e+02 Score=20.53 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHcccc
Q psy15550 72 SAEIRSRAEPFIKWLREAE 90 (125)
Q Consensus 72 ~~~~r~~~~~Fv~WLeeae 90 (125)
.+.+|+.+..|+.=|-+.+
T Consensus 35 vaqm~e~vsel~~~lVqqe 53 (96)
T PF15387_consen 35 VAQMRELVSELFGPLVQQE 53 (96)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3666777777776665544
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=23.02 E-value=1.4e+02 Score=27.41 Aligned_cols=54 Identities=9% Similarity=0.198 Sum_probs=33.8
Q ss_pred ccccccCchHHHHHHHHHHHHHHHhhHH-HHHhhHHHHHHHH--hhhc-ccchhHHHHH
Q psy15550 4 CPRFTHEDIKAQRYLLNGIEQVIALHKE-KLLSMVPGILKLF--YDYD-ILEEKVLLEW 58 (125)
Q Consensus 4 l~~f~~~~~~~q~~~L~ale~~~~~~~~-~~~~~f~~IL~~L--Yd~D-IleEeaIl~W 58 (125)
+.+|...+..-|+++|.+.-.++. ..| ...+.+.++|+.+ |+.+ =|-..+..-|
T Consensus 484 i~~f~~E~~~VqlqlLta~vKlfl-~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 484 IDTIMEHEQRVQLAILSAAVKMFL-RDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAYW 541 (746)
T ss_pred HhhhccCCHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 344555455778889999877764 444 4456677777654 4444 4556677666
No 32
>PF03202 Lipoprotein_10: Putative mycoplasma lipoprotein, C-terminal region; InterPro: IPR004890 This domain is found along with a central domain (IPR004984 from INTERPRO) in a group of Mycoplasma lipoproteins of unknown function.
Probab=22.68 E-value=72 Score=23.01 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcccccccCC
Q psy15550 76 RSRAEPFIKWLREAEEEDSD 95 (125)
Q Consensus 76 r~~~~~Fv~WLeeaeEEsdd 95 (125)
-+.++.||.||-+..++...
T Consensus 18 D~aTkkFv~Wll~~~~~~~~ 37 (135)
T PF03202_consen 18 DKATKKFVNWLLNSKETWKY 37 (135)
T ss_pred cHHHHHHHHHHHcCcccccc
Confidence 36788999999988765443
No 33
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=22.56 E-value=35 Score=29.50 Aligned_cols=6 Identities=50% Similarity=0.595 Sum_probs=2.6
Q ss_pred HHHHHH
Q psy15550 75 IRSRAE 80 (125)
Q Consensus 75 ~r~~~~ 80 (125)
+|+.++
T Consensus 38 IRkLge 43 (458)
T PF10446_consen 38 IRKLGE 43 (458)
T ss_pred HhhhhH
Confidence 444443
No 34
>cd07350 NR_LBD_Dax1 The ligand binding domain of DAX1 protein, a nuclear receptor lacking DNA binding domain. The ligand binding domain of the DAX1 protein: DAX1 (dosage-sensitive sex reversal adrenal hypoplasia congenita critical region on chromosome X gene 1) is a nuclear receptor with a typical ligand binding domain, but lacks the DNA binding domain. DAX1 plays an important role in the normal development of several hormone-producing tissues. Duplications of the region of the X chromosome containing DAX1 cause dosage sensitive sex reversal. DAX1 acts as a global repressor of many nuclear receptors, including SF-1, LRH-1, ERR, ER, AR and PR. DAX1 can form homodimer and heterodimerizes with its alternatively spliced isoform DAX1A and other nuclear receptors such as SHP, ERalpha and SF-1.
Probab=21.50 E-value=2.4e+02 Score=21.75 Aligned_cols=48 Identities=6% Similarity=-0.055 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHh
Q psy15550 13 KAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAE 60 (125)
Q Consensus 13 ~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~ 60 (125)
.-|-.++.+++.||...+|.-...|+++|..|=..=-++...|-.++-
T Consensus 170 ~lQe~~~~aL~~yi~~~~p~~~~rf~kLLl~Lp~LRsi~~~~iE~lff 217 (232)
T cd07350 170 GLQWEAQQALNEHVRMIHRGDQARFAKLNIALSLLRAINANVIAELFF 217 (232)
T ss_pred HHHHHHHHHHHHHHHhhCCChhhHHHHHHHHhHHHHccCHHHHHHHhc
Confidence 455566677777775444444446777777776666676667666653
No 35
>PF09733 VEFS-Box: VEFS-Box of polycomb protein; InterPro: IPR019135 The VEFS-Box is found in the the C-terminal region of the VRN2, EMF2, FIS2, and Su(z)12 polycomb proteins. This domain is characterised by an acidic cluster and a tryptophan/methionine-rich sequence, the acidic-W/M domain []. In some proteins the VEFS-Box is associated with a zinc-finger domain located roughly 100 residues towards the N terminus. These proteins are part of the polycomb cluster of proteins which control HOX gene transcription as it functions in heterochromatin-mediated repression [].
Probab=21.47 E-value=3.2e+02 Score=19.66 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=21.9
Q ss_pred HHHHhhHHHHHHHHhhhcccchhHHH
Q psy15550 31 EKLLSMVPGILKLFYDYDILEEKVLL 56 (125)
Q Consensus 31 ~~~~~~f~~IL~~LYd~DIleEeaIl 56 (125)
|.+..-|..-+-.||+.++|+..+|.
T Consensus 109 ~~l~~~f~lHl~~L~d~glLd~~~i~ 134 (140)
T PF09733_consen 109 PNLRREFLLHLINLWDFGLLDARTID 134 (140)
T ss_pred hhHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 56667788888999999999999885
No 36
>cd06950 NR_LBD_Tlx_PNR_like The ligand binding domain of Tailless-like proteins, orphan nuclear receptors. The ligand binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like family: This family includes photoreceptor cell-specific nuclear receptor (PNR), Tailless (TLX), and related receptors. TLX is an orphan receptor that is expressed by neural stem/progenitor cells in the adult brain of the subventricular zone (SVZ) and the dentate gyrus (DG). It plays a key role in neural development by promoting cell cycle progression and preventing apoptosis in the developing brain. PNR is expressed only in the outer layer of retinal photoreceptor cells. It may be involved in the signaling pathway regulating photoreceptor differentiation and/or maintenance. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, TLX and PNR have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge
Probab=21.36 E-value=2e+02 Score=21.50 Aligned_cols=39 Identities=8% Similarity=0.004 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHH
Q psy15550 17 YLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVL 55 (125)
Q Consensus 17 ~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaI 55 (125)
.++.||++||...+|.....|+++|..|=..--++...+
T Consensus 157 ~~~~aL~~y~~~~~~~~~~Rf~kLLl~Lp~lr~ls~~~~ 195 (206)
T cd06950 157 QAQLMLNKHIRTRYPTQPARFGKLLLLLPSLRFISSSTI 195 (206)
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhhHHHH
Confidence 344555555432223222344444444433333333333
No 37
>PF11942 Spt5_N: Spt5 transcription elongation factor, acidic N-terminal; InterPro: IPR022581 This is the very acidic N-terminal domain of the early transcription elongation factor Spt5 []. The Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The actual function of this N-terminal domain is not known although it is dispensable for binding to Spt4 [], nor is it essential for RNA polymerase II binding [].
Probab=20.82 E-value=36 Score=22.83 Aligned_cols=13 Identities=23% Similarity=0.453 Sum_probs=5.8
Q ss_pred HHHHHcccccccC
Q psy15550 82 FIKWLREAEEEDS 94 (125)
Q Consensus 82 Fv~WLeeaeEEsd 94 (125)
||.+=.+.+++++
T Consensus 1 Fid~EAeVDddeE 13 (97)
T PF11942_consen 1 FIDDEAEVDDDEE 13 (97)
T ss_pred CchhhcccCCccc
Confidence 4444444444433
No 38
>cd06935 NR_LBD_TR The ligand binding domain of thyroid hormone receptor, a members of a superfamily of nuclear receptors. The ligand binding domain (LBD) of thyroid hormone receptors: Thyroid hormone receptors are members of a superfamily of nuclear receptors. Thyroid hormone receptors (TR) mediate the actions of thyroid hormones, which play critical roles in growth, development, and homeostasis in mammals. They regulate overall metabolic rate, cholesterol and triglyceride levels, and heart rate, and affect mood. TRs are expressed from two separate genes (alpha and beta) in human and each gene generates two isoforms of the receptor through differential promoter usage or splicing. TRalpha functions in the heart to regulate heart rate and rhythm and TRbeta is active in the liver and other tissues. The unliganded TRs function as transcription repressors, by binding to thyroid hormone response elements (TRE) predominantly as homodimers, or as heterodimers with retinoid X-receptors (RXR), a
Probab=20.10 E-value=1.3e+02 Score=23.28 Aligned_cols=9 Identities=22% Similarity=0.386 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q psy15550 14 AQRYLLNGI 22 (125)
Q Consensus 14 ~q~~~L~al 22 (125)
....||.|+
T Consensus 153 ~E~alLkAi 161 (243)
T cd06935 153 TEVALLQAV 161 (243)
T ss_pred HHHHHHHHH
Confidence 344444444
Done!