Query psy15550
Match_columns 125
No_of_seqs 108 out of 549
Neff 6.4
Searched_HMMs 29240
Date Sat Aug 17 00:11:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iu1_A EIF5, eukaryotic transl 100.0 6.5E-30 2.2E-34 194.9 10.3 106 2-108 67-172 (208)
2 2ful_A EIF-5, eukaryotic trans 100.0 1.3E-29 4.6E-34 188.9 7.2 97 2-99 74-170 (177)
3 1paq_A Translation initiation 99.9 1.1E-26 3.7E-31 174.2 8.4 90 2-96 97-187 (189)
4 3jui_A Translation initiation 99.9 4.9E-27 1.7E-31 175.4 5.4 90 2-95 91-180 (182)
5 3d3m_A Eukaryotic translation 99.9 7.9E-23 2.7E-27 150.5 6.0 84 2-89 85-168 (168)
6 3l6a_A Eukaryotic translation 99.8 6.9E-19 2.4E-23 143.1 6.1 84 2-89 281-364 (364)
7 1ug3_A EIF4GI, eukaryotic prot 99.2 2.7E-12 9.1E-17 102.8 3.1 58 2-61 277-334 (339)
8 3c5t_B Exendin-4, exenatide; l 84.3 0.48 1.6E-05 25.2 1.5 13 77-89 9-21 (31)
9 1ayz_A UBC2, ubiquitin-conjuga 82.4 2.6 8.9E-05 30.1 5.4 11 48-58 120-130 (169)
10 2g49_C Glucagon preproprotein; 75.4 1.6 5.4E-05 22.8 1.7 13 76-88 16-28 (29)
11 2b4n_A Gastric inhibitory poly 74.9 2.7 9.2E-05 23.8 2.7 16 76-91 16-31 (42)
12 2l63_A GLP-2, glucagon-like pe 71.7 2.1 7.3E-05 23.0 1.7 14 76-89 16-29 (33)
13 1jrj_A Exendin-4; Trp-CAGE, GL 71.0 2.2 7.5E-05 23.8 1.7 15 76-90 16-30 (39)
14 1t5q_A Gastric inhibitory poly 69.4 2.7 9.3E-05 22.0 1.8 13 76-88 16-28 (30)
15 3iol_B Glucagon; receptor-liga 68.3 2.9 0.0001 22.0 1.8 13 76-88 16-28 (31)
16 1h2v_C 80 kDa nuclear CAP bind 58.5 9.6 0.00033 33.5 4.2 54 3-61 553-606 (771)
17 2rrh_A VIP peptides; peptide h 54.0 7.6 0.00026 20.0 1.8 13 76-88 16-28 (29)
18 1wlx_A Alpha-actinin 4; three- 47.8 7.2 0.00025 27.0 1.4 22 71-92 13-34 (129)
19 3qml_C Protein SLS1, nucleotid 41.9 18 0.00061 28.7 3.0 74 11-91 173-268 (315)
20 2d2p_A Pituitary adenylate cyc 30.3 29 0.00098 19.1 1.8 12 77-88 17-28 (39)
21 2ld7_B Paired amphipathic heli 25.2 1.2E+02 0.0042 18.5 5.2 42 13-57 9-50 (75)
22 2csf_A DNA-binding protein SAT 21.2 52 0.0018 21.8 2.0 36 48-91 50-85 (101)
23 3iz5_v 60S acidic ribosomal pr 20.3 21 0.00074 24.0 0.0 6 97-102 101-106 (113)
No 1
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=99.96 E-value=6.5e-30 Score=194.88 Aligned_cols=106 Identities=58% Similarity=0.937 Sum_probs=89.5
Q ss_pred CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550 2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP 81 (125)
Q Consensus 2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~ 81 (125)
|+|++|++++...|+.+|.++|.+|+..+|.+++.|++||+.||+.|||+|++|++||+++++++++++.++++|++++|
T Consensus 67 ~lL~~~~~~~~~~Q~~lL~alE~~~~~~~~~~~~~~~~IL~~LYD~DIleEEaIl~W~~~~s~~~~~~e~~k~v~~~~~p 146 (208)
T 2iu1_A 67 RHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEP 146 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHHHHTTSSCHHHHHHHHHSCCCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 78999998556999999999999987778899999999999999999999999999999887666556556689999999
Q ss_pred HHHHHcccccccCCCCCCCCCcccccc
Q psy15550 82 FIKWLREAEEEDSDSEESDDDLPNLGA 108 (125)
Q Consensus 82 Fv~WLeeaeEEsdd~eeddd~~~~~~~ 108 (125)
||+||++|+|||++++|+|+ ++|.++
T Consensus 147 FI~WL~EAEEEs~eeeeeee-d~~~e~ 172 (208)
T 2iu1_A 147 FIKWLKEAEEESSGGEEEDE-DENIEV 172 (208)
T ss_dssp HHHHHHCSSCCCCCCCCCCC-SCHHHH
T ss_pred HHHHHHcccccccccccccc-ccccce
Confidence 99999999998876544433 344443
No 2
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-29 Score=188.92 Aligned_cols=97 Identities=31% Similarity=0.654 Sum_probs=79.8
Q ss_pred CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550 2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP 81 (125)
Q Consensus 2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~ 81 (125)
|+|++|+++ .+.|+++|.+||.+|+++++.+++.|++||+.||+.|||+|++|++||+++++++++++..+++|++++|
T Consensus 74 ~lL~~~~~~-~~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~LYd~DIleEeaIl~W~~~~skk~v~~e~~~~v~~~~~p 152 (177)
T 2ful_A 74 AFFTKILVT-PEYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKP 152 (177)
T ss_dssp HHHHHHCCS-HHHHHHHHHHHHHHHHTTCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHHCCCSSSSCHHHHHHHHHTTHH
T ss_pred HHHHHHcCC-cHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccCChHHHHHHHHHHHH
Confidence 789999976 5999999999999996678899999999999999999999999999999877555555667889999999
Q ss_pred HHHHHcccccccCCCCCC
Q psy15550 82 FIKWLREAEEEDSDSEES 99 (125)
Q Consensus 82 Fv~WLeeaeEEsdd~eed 99 (125)
||+||++|||||++++|+
T Consensus 153 FI~WL~eAEEEseeeeee 170 (177)
T 2ful_A 153 FITWLETAESDDDEEDDE 170 (177)
T ss_dssp HHHHHHHCC---------
T ss_pred HHHHHHcccccccccccc
Confidence 999999999987765443
No 3
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=99.93 E-value=1.1e-26 Score=174.24 Aligned_cols=90 Identities=26% Similarity=0.367 Sum_probs=75.2
Q ss_pred CcccccccCchHHHHHHHHHHHHHHH-hhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHH
Q psy15550 2 PQCPRFTHEDIKAQRYLLNGIEQVIA-LHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAE 80 (125)
Q Consensus 2 pll~~f~~~~~~~q~~~L~ale~~~~-~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~ 80 (125)
|+|++|+++ .+.|+++|.++|.+|. .++|.+++.|++||+.||+.|||+|++|++||++++.. + ..+++|++++
T Consensus 97 ~ll~~~~~~-~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~~~~~~~--~--~~~~v~~~~~ 171 (189)
T 1paq_A 97 LLFKRQAFD-EEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTD--P--RYDEVKKLTV 171 (189)
T ss_dssp GGGGGTCCS-HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCC--G--GGHHHHHHHH
T ss_pred HHHHHHHcC-cHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHHhCCCch--H--HHHHHHHHHH
Confidence 899999986 5999999999999985 37888899999999999999999999999999887632 2 3458999999
Q ss_pred HHHHHHcccccccCCC
Q psy15550 81 PFIKWLREAEEEDSDS 96 (125)
Q Consensus 81 ~Fv~WLeeaeEEsdd~ 96 (125)
|||+||++||||||++
T Consensus 172 ~Fi~WL~eAEeEs~~e 187 (189)
T 1paq_A 172 KWVEWLQNADEESSSE 187 (189)
T ss_dssp HHHHHHHHTC------
T ss_pred HHHHHHhccCcccccc
Confidence 9999999999887653
No 4
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=99.93 E-value=4.9e-27 Score=175.41 Aligned_cols=90 Identities=28% Similarity=0.487 Sum_probs=76.1
Q ss_pred CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550 2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP 81 (125)
Q Consensus 2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~ 81 (125)
|+|.+|+++ ++.|+++|.++|.+| ..++.+++.|+.||+.||+.|||+|++|++||+++++. +++..+++|++++|
T Consensus 91 ~ll~~~~~~-~~~q~~lL~ale~~~-~~~~~~~~~~~~il~~LYd~DileEe~Il~W~~~~~~~--~~~~~~~vr~~~~~ 166 (182)
T 3jui_A 91 PVFRNYIKR-AADHLEALAAIEDFF-LEHEALGISMAKVLMAFYQLEILAGETILSWFSQRDTT--DKGQQLRKNQQLQR 166 (182)
T ss_dssp HHHHHHCCS-HHHHHHHHHHHHHHH-HHCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHTCCC----CHHHHHTTCHHHHH
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHHH-HhCchHHHHHHHHHHHHhhcchhchHHHHHHHHcCCcc--ccchHHHHHHHHHH
Confidence 789999997 599999999999998 57888899999999999999999999999999887653 23445678999999
Q ss_pred HHHHHcccccccCC
Q psy15550 82 FIKWLREAEEEDSD 95 (125)
Q Consensus 82 Fv~WLeeaeEEsdd 95 (125)
||+||++|||||||
T Consensus 167 Fi~WL~eAEEEs~e 180 (182)
T 3jui_A 167 FIQWLKEAEEESSE 180 (182)
T ss_dssp HHHHHHHHHC----
T ss_pred HHHHHhccCcccCC
Confidence 99999999988764
No 5
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=99.87 E-value=7.9e-23 Score=150.54 Aligned_cols=84 Identities=21% Similarity=0.409 Sum_probs=74.0
Q ss_pred CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550 2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP 81 (125)
Q Consensus 2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~ 81 (125)
|+|.+|++++.+.|+++|+++|.+|. .++.+++.|+.||+.||+.|||+||+|++||++++.. .+...+++++++|
T Consensus 85 ~ll~~~~~~~~~~q~~lL~alq~~~~-~~~~~~~~~~~il~~LYd~DvleEe~il~W~~~~~~~---~~~~~~~~~~~~~ 160 (168)
T 3d3m_A 85 PVMQKFLHDHVDLQVSALYALQVHCY-NSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQE---FPGKGKALFQVNQ 160 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCSCC---CTTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHhhcchhhHHHHHHHHhCCcch---hhHHHHHHHHHHH
Confidence 78999998656999999999999985 6778889999999999999999999999999886533 2236789999999
Q ss_pred HHHHHccc
Q psy15550 82 FIKWLREA 89 (125)
Q Consensus 82 Fv~WLeea 89 (125)
||+||++|
T Consensus 161 Fi~WL~eA 168 (168)
T 3d3m_A 161 WLTWLETA 168 (168)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcC
Confidence 99999987
No 6
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.75 E-value=6.9e-19 Score=143.11 Aligned_cols=84 Identities=21% Similarity=0.442 Sum_probs=68.9
Q ss_pred CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550 2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP 81 (125)
Q Consensus 2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~ 81 (125)
|+|++|++++.+.|+++|+|+|.+|. ......+.++.|++.||+.|||+||+|++||++.++.+ . ...++|++++|
T Consensus 281 ~ll~~~~~~~~~~q~~~L~alq~~~~-~~~~~~~~l~~il~~LYd~DileEe~il~W~~~~~~~~--~-~k~~~~~~~~~ 356 (364)
T 3l6a_A 281 PVMQKFLHDHVDLQVSALYALQVHCY-NSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEF--P-GKGKALFQVNQ 356 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCCCSS--T-THHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCccc--c-hHHHHHHHHHH
Confidence 78999999864569999999999985 33222367799999999999999999999998865432 2 24578999999
Q ss_pred HHHHHccc
Q psy15550 82 FIKWLREA 89 (125)
Q Consensus 82 Fv~WLeea 89 (125)
||+||++|
T Consensus 357 Fi~WL~eA 364 (364)
T 3l6a_A 357 WLTWLETA 364 (364)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99999987
No 7
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.23 E-value=2.7e-12 Score=102.80 Aligned_cols=58 Identities=12% Similarity=0.335 Sum_probs=52.2
Q ss_pred CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhh
Q psy15550 2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEK 61 (125)
Q Consensus 2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~ 61 (125)
|+|++|+++ .+.|+++|+|+|.+| +++....+.|..|++.||+.|||+||+|++||++
T Consensus 277 pll~~~~~~-~~~ql~~L~alQ~~~-~~~~~~~~~l~~~~~~LYd~dVi~Eeail~W~~~ 334 (339)
T 1ug3_A 277 KLLQKYLCD-EQKELQALYALQALV-VTLEQPPNLLRMFFDALYDEDVVKEDAFYSWESS 334 (339)
T ss_dssp HHHHHHCCS-HHHHHHHHHHHHHHH-HHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHTC-
T ss_pred HHHHHHcCC-cHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHhCcchhhHHHHHHHHhc
Confidence 789999976 599999999999998 5666667899999999999999999999999976
No 8
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=84.32 E-value=0.48 Score=25.24 Aligned_cols=13 Identities=31% Similarity=0.828 Sum_probs=10.9
Q ss_pred HHHHHHHHHHccc
Q psy15550 77 SRAEPFIKWLREA 89 (125)
Q Consensus 77 ~~~~~Fv~WLeea 89 (125)
++++.||+||.+.
T Consensus 9 ~aakdFv~WL~ng 21 (31)
T 3c5t_B 9 EAVRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 5788999999864
No 9
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=82.37 E-value=2.6 Score=30.08 Aligned_cols=11 Identities=0% Similarity=-0.139 Sum_probs=4.8
Q ss_pred cccchhHHHHH
Q psy15550 48 DILEEKVLLEW 58 (125)
Q Consensus 48 DIleEeaIl~W 58 (125)
+-+..++--.|
T Consensus 120 ~P~n~~aa~~~ 130 (169)
T 1ayz_A 120 SPANVEAATLF 130 (169)
T ss_dssp SCSSHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 34444544333
No 10
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=75.35 E-value=1.6 Score=22.83 Aligned_cols=13 Identities=38% Similarity=0.940 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHcc
Q psy15550 76 RSRAEPFIKWLRE 88 (125)
Q Consensus 76 r~~~~~Fv~WLee 88 (125)
..+++.||+||.+
T Consensus 16 ~~aak~fv~wL~~ 28 (29)
T 2g49_C 16 SRRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHHhc
Confidence 3568899999974
No 11
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=74.93 E-value=2.7 Score=23.78 Aligned_cols=16 Identities=19% Similarity=0.613 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHccccc
Q psy15550 76 RSRAEPFIKWLREAEE 91 (125)
Q Consensus 76 r~~~~~Fv~WLeeaeE 91 (125)
...++.||+||...-.
T Consensus 16 ~~~akdFv~WL~~~k~ 31 (42)
T 2b4n_A 16 KIHQQDFVNWLLAQKG 31 (42)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 3578899999997663
No 12
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=71.75 E-value=2.1 Score=22.97 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHccc
Q psy15550 76 RSRAEPFIKWLREA 89 (125)
Q Consensus 76 r~~~~~Fv~WLeea 89 (125)
..+++.||+||...
T Consensus 16 ~~aak~fl~wL~~~ 29 (33)
T 2l63_A 16 NLAARDFINWLIQT 29 (33)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 45688999999864
No 13
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=70.98 E-value=2.2 Score=23.77 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHcccc
Q psy15550 76 RSRAEPFIKWLREAE 90 (125)
Q Consensus 76 r~~~~~Fv~WLeeae 90 (125)
..+++.||+||.+.-
T Consensus 16 ~~aak~fv~wL~~~k 30 (39)
T 1jrj_A 16 EEAVRLFIEWLKNGG 30 (39)
T ss_dssp HHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHcCC
Confidence 356889999998643
No 14
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=69.36 E-value=2.7 Score=22.05 Aligned_cols=13 Identities=23% Similarity=0.749 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHcc
Q psy15550 76 RSRAEPFIKWLRE 88 (125)
Q Consensus 76 r~~~~~Fv~WLee 88 (125)
...++.||+||.+
T Consensus 16 ~~~ak~fv~wLl~ 28 (30)
T 1t5q_A 16 KIHQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 4568899999964
No 15
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=68.29 E-value=2.9 Score=21.98 Aligned_cols=13 Identities=38% Similarity=0.761 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHcc
Q psy15550 76 RSRAEPFIKWLRE 88 (125)
Q Consensus 76 r~~~~~Fv~WLee 88 (125)
.+.++.||+||..
T Consensus 16 ~~~ak~Fv~wL~~ 28 (31)
T 3iol_B 16 GQAAKEFIAWLVK 28 (31)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc
Confidence 4678899999964
No 16
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=58.45 E-value=9.6 Score=33.45 Aligned_cols=54 Identities=7% Similarity=0.137 Sum_probs=43.6
Q ss_pred cccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhh
Q psy15550 3 QCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEK 61 (125)
Q Consensus 3 ll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~ 61 (125)
+|+.++.+ +..|..+|.++-++- .++|.+. ..|+..|-+.+||+-.+|.+|.=+
T Consensus 553 ~lk~l~~~-~~~q~~il~~v~~~W-~~~~q~~---~ividkll~~~iv~p~~Vv~w~f~ 606 (771)
T 1h2v_C 553 VFKTLAES-DEGKLHVLRVMFEVW-RNHPQMI---AVLVDKMIRTQIVDCAAVANWIFS 606 (771)
T ss_dssp HHHHHTSS-HHHHHHHHHHHHHHH-TTCHHHH---HHHHHHHHHTTSSCHHHHHHHHTS
T ss_pred HHHHHcCC-HHHHHHHHHHHHHHH-hcCCceE---ehHHHHHHhcCCCCHHHHHHHHcC
Confidence 45666675 488999999998887 5677744 678888889999999999999733
No 17
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=54.01 E-value=7.6 Score=20.03 Aligned_cols=13 Identities=0% Similarity=0.184 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHcc
Q psy15550 76 RSRAEPFIKWLRE 88 (125)
Q Consensus 76 r~~~~~Fv~WLee 88 (125)
...++.||+||.+
T Consensus 16 ~~~ak~fl~~l~~ 28 (29)
T 2rrh_A 16 QMAVKKYLNSILN 28 (29)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3568899999964
No 18
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=47.83 E-value=7.2 Score=26.99 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHcccccc
Q psy15550 71 LSAEIRSRAEPFIKWLREAEEE 92 (125)
Q Consensus 71 ~~~~~r~~~~~Fv~WLeeaeEE 92 (125)
-...|.++|.||=.|++.|+|+
T Consensus 13 L~leFAKrAa~fNnW~e~A~Ed 34 (129)
T 1wlx_A 13 LHLEYAKRAAPFNNWMESAMED 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHhHHHH
Confidence 3577889999999999999964
No 19
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=41.91 E-value=18 Score=28.67 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=46.1
Q ss_pred chHHHHHHHHHHHHHHHhhH-------------------HHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHH
Q psy15550 11 DIKAQRYLLNGIEQVIALHK-------------------EKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKEL 71 (125)
Q Consensus 11 ~~~~q~~~L~ale~~~~~~~-------------------~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~ 71 (125)
+...|.-++.-++....... |. ...+...++.++....++|.-+.+.|..-.. .
T Consensus 173 d~~~k~Kvl~li~d~f~~~~~~~~~~~~~~~kR~~e~~~~~-~q~w~~~~q~~iq~k~~dE~~~r~fF~~L~~------i 245 (315)
T 3qml_C 173 DKQLQIKVLELISKILKADMYENDDTNLILFKRNAENWSSN-LQEWANEFQEMVQNKSIDELHTRTFFDTLYN------L 245 (315)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTC--------------------CHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH------H
T ss_pred CHHHHHHHHHHHHHHcccccccccccccchhhhcccccCch-HHHHHHHHHHHHhccccCHHHHHHHHHHHHH------H
Confidence 35677777777777663110 11 1225677788888899999999888876332 1
Q ss_pred HHHHH---HHHHHHHHHHccccc
Q psy15550 72 SAEIR---SRAEPFIKWLREAEE 91 (125)
Q Consensus 72 ~~~~r---~~~~~Fv~WLeeaeE 91 (125)
.+..+ +....|++||.+.-|
T Consensus 246 k~~~~~~lK~~~~FLnWLa~E~e 268 (315)
T 3qml_C 246 KKIFKSDITINKGFLNWLAQQCK 268 (315)
T ss_dssp HHHHGGGSCCCHHHHHHHHHHHH
T ss_pred HHhcccccCCCHHHHHHHHHHHH
Confidence 22222 334579999986554
No 20
>2d2p_A Pituitary adenylate cyclase activating polypeptide-38; hormone/growth factor complex; NMR {Homo sapiens} PDB: 2jod_B
Probab=30.30 E-value=29 Score=19.06 Aligned_cols=12 Identities=0% Similarity=0.041 Sum_probs=9.6
Q ss_pred HHHHHHHHHHcc
Q psy15550 77 SRAEPFIKWLRE 88 (125)
Q Consensus 77 ~~~~~Fv~WLee 88 (125)
..++.||.||..
T Consensus 17 ~~ak~fl~~l~~ 28 (39)
T 2d2p_A 17 MAVKKYLAAVLG 28 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 468899999963
No 21
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=25.23 E-value=1.2e+02 Score=18.49 Aligned_cols=42 Identities=5% Similarity=0.281 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHH
Q psy15550 13 KAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLE 57 (125)
Q Consensus 13 ~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~ 57 (125)
.+.+..+..+-..+ .++....-|.++| .+|.+++|+-..++.
T Consensus 9 ~de~~Ff~kVK~~l--~~~~~Y~eFLk~l-nlf~q~~Id~~eLv~ 50 (75)
T 2ld7_B 9 GTESLFFDKVRKAL--RSAEAYENFLRCL-VIFNQEVISRAELVQ 50 (75)
T ss_dssp SHHHHHHHHHHHHH--CSHHHHHHHHHHH-HHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHH-HHhhhcCcCHHHHHH
Confidence 56777888887765 4566667777776 479999999998873
No 22
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=21.24 E-value=52 Score=21.75 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=25.1
Q ss_pred cccchhHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHccccc
Q psy15550 48 DILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAEE 91 (125)
Q Consensus 48 DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~Fv~WLeeaeE 91 (125)
+.+++ |++|.+++.+. ...+....+.+-.||+-.++
T Consensus 50 GtLSe--lLR~~enPkP~------~~~lW~~Lk~m~nWL~Lpe~ 85 (101)
T 2csf_A 50 GWLCE--LLRWKENPSPE------NRTLWENLCTIRRFLNLPQH 85 (101)
T ss_dssp HHHHH--HHHHCCCCCTT------CHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHH--HHhcccCCCcc------hhhHHHHHHHHHHHHcCCHH
Confidence 45555 88999887642 34555666689999997774
No 23
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=20.35 E-value=21 Score=23.98 Aligned_cols=6 Identities=100% Similarity=1.304 Sum_probs=0.0
Q ss_pred CCCCCC
Q psy15550 97 EESDDD 102 (125)
Q Consensus 97 eeddd~ 102 (125)
||+|||
T Consensus 101 EEsDdD 106 (113)
T 3iz5_v 101 EESDDD 106 (113)
T ss_dssp ------
T ss_pred cccccc
Confidence 334444
Done!