RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15550
         (125 letters)



>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b
           epsilon {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 161

 Score = 59.9 bits (145), Expect = 5e-13
 Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           R   ++ +    +   +E+++    +K   ++   L   YD DI+EE V+ +W +  S  
Sbjct: 81  RQAFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVS-- 138

Query: 66  YVSKELSAEIRSRAEPFIKWLREAE 90
             +     E++     +++WL+ A+
Sbjct: 139 --TDPRYDEVKKLTVKWVEWLQNAD 161


>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 40.3 bits (94), Expect = 7e-06
 Identities = 8/57 (14%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 2   PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEW 58
               ++  ++ + +   L  + Q + +  E+  +++       YD D+++E     W
Sbjct: 73  KLLQKYLCDE-QKELQALYAL-QALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSW 127


>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 135

 Score = 23.9 bits (51), Expect = 6.2
 Identities = 2/21 (9%), Positives = 6/21 (28%)

Query: 32  KLLSMVPGILKLFYDYDILEE 52
             +  +     L    + L +
Sbjct: 113 LAVRRIAERPGLTVGLEPLLD 133


>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 164

 Score = 23.6 bits (51), Expect = 8.0
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 12/53 (22%)

Query: 40  ILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAEEE 92
           ++  F DY        L +  K SK Y    +   +R++   F+K L  A  +
Sbjct: 123 LIHTFRDY--------LHYHIKCSKAY----IHTRMRAKTSDFLKVLNRARPD 163


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 476,665
Number of extensions: 21076
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 10
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.4 bits)