BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15551
         (640 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
           Resolution
 pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
           Domain At 3.0 Angstrom Resolution
          Length = 575

 Score = 28.9 bits (63), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)

Query: 304 LSAHEIFNNKNKFDS--------RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKL 355
           +  HE++  + K D+        + R+    ++ +  KLQ +I  +++   +  + Q++L
Sbjct: 285 MGNHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRL 344

Query: 356 KQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELE 394
           +Q   E+E   A+L E  D  L  EE ++QL   K ELE
Sbjct: 345 RQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELE 383


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.351 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,588,699
Number of Sequences: 62578
Number of extensions: 612587
Number of successful extensions: 2275
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2180
Number of HSP's gapped (non-prelim): 109
length of query: 640
length of database: 14,973,337
effective HSP length: 105
effective length of query: 535
effective length of database: 8,402,647
effective search space: 4495416145
effective search space used: 4495416145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)